Citrus Sinensis ID: 017187

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDANSGF
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccEEEEEcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHccccEEEEEEcHHcccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHccHHHccccEEEcccccccccccEEEEEcccccEEEEccccccccccccHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccEEEcccccccccc
Coil and Loop (DISEMBL)
MGLKRIIKKglglgemgftkgggninwfpgHMAAATRAIKHRLKISDLVIEVrdsriplssahpglqpqlSAKRRVIALNkkdlanpniLNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVgvpnvgksALINSIHQIAlsrfpvqektkratvgplpgvtqdiagfkiahrpsiyvldtpgvlvpsipdiETGLKLALSgsikdsvvGEERIAQYLLAVLNTrgtplhwrhlnnrtevsqsetenkheynlkdlrpkrrkppnasdvtyIEDLVTGVQRALHVSLsefdgnvedendLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLfrtgklgpfilddvpdansgf
Flexible Loop (DISEMBL)
MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSriplssahpglqpqlsAKRRVIALNkkdlanpnilNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKevisreptllVMVVGVPNVGKSALINSIHQIalsrfpvqektkratvgplpgvTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTrgtplhwrhlnnrtevsqsetenkheynlkdlrpkrrkppnasdVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRtgklgpfilddvpdansgf
Low Complexity Region (SEG)
MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSvqkllelvelklkevISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDANSGF
Disordered region (IsUnstruct)
*****************************************RLKISDLVIEVR********************RRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN*********************************VTYIEDLVTGVQRALHVSLSEFDGNVED*NDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDD********
Disordered Region (DISOPRED)
************LGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIA***************GPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFE*****************MVSKKFLTLFRTGKLGPFILD**PD*****
Disordered Region (DISEMBL)
MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT***********EYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDANSGF
Disordered Region (DISPRO)
****RIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDANSGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
Q8R2R6	326	Mitochondrial GTPase 1 OS	yes	no	0.746	0.858	0.347	2e-38
Q9BT17	334	Mitochondrial GTPase 1 OS	yes	no	0.549	0.616	0.402	1e-36
Q4PS77	332	Mitochondrial GTPase 1 OS	yes	no	0.546	0.617	0.387	4e-36
B7GGD6	284	Ribosome biogenesis GTPas	yes	no	0.546	0.721	0.358	6e-35
A9JTX2	311	Mitochondrial GTPase 1 OS	yes	no	0.658	0.794	0.349	3e-34
E3TDS3	320	Mitochondrial GTPase 1 OS	N/A	no	0.546	0.640	0.402	7e-34
C5D8U8	283	Ribosome biogenesis GTPas	yes	no	0.546	0.724	0.340	4e-33
Q17EJ1	316	Mitochondrial GTPase 1 OS	N/A	no	0.546	0.648	0.364	1e-32
A8FD69	282	Ribosome biogenesis GTPas	yes	no	0.546	0.726	0.351	5e-32
Q819W8	296	Ribosome biogenesis GTPas	yes	no	0.536	0.679	0.352	1e-31

>sp|Q8R2R6|MTG1_MOUSE Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 170/351 (48%), Gaps = 71/351 (20%)

Query: 27  WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
           WFPGHMA   + ++  LK  D VIEV D+RIP S  +P  Q  L  K  ++ LNK DLA+
Sbjct: 29  WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLAD 88

Query: 87  PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
                K V+           F +C +D      + +  V K++EL+    +   +  P  
Sbjct: 89  LTEQQKIVQRLEEKGLSNVLFTNCVKD-----ENIKQIVPKVMELIRCSYRYHRAETPEY 143

Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
            +MVVGVPNVGKS+LINS+ +  L         K A VG  PG+T+ +    ++  RP +
Sbjct: 144 CIMVVGVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAVTSRIQVCERPLV 197

Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
           ++LDTPGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN  G   + +H   
Sbjct: 198 FLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYAL 257

Query: 256 RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
            +   Q       E+ LK++  K RK       T    ++TG             GNV  
Sbjct: 258 ASACDQI------EWVLKNVAIKLRK-------TRKVKVLTGT------------GNV-- 290

Query: 316 ENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
                        V+Q     P  A     M ++ FL  FR+G LG  +LD
Sbjct: 291 ------------NVIQ-----PDYA-----MAARDFLRTFRSGLLGQVMLD 319

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.
Mus musculus (taxid: 10090)

>sp|Q9BT17|MTG1_HUMAN Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 20/226 (8%)

Query: 27  WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
           WFPGHMA   + ++  LK+ D +IEV D+RIPLS  +P  Q  L  K  ++ LNK DLA+
Sbjct: 30  WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89

Query: 87  PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
                K ++H +    ++ I  N     +V++++ +V     E+I R             
Sbjct: 90  LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMV----TELIGRSHRYHRKENLEYC 145

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
           +MV+GVPNVGKS+LINS+ +  L       K K   VG  PG+T+ + +  +++ RP ++
Sbjct: 146 IMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMF 199

Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
           +LDTPGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN
Sbjct: 200 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q4PS77|MTG1_BOVIN Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 SV=2

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 128/227 (56%), Gaps = 22/227 (9%)

Query: 27  WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
           WFPGHMA   + ++  L++ D +IEV D++IPLS  +P  Q  L  K  ++ LNK DLA+
Sbjct: 30  WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89

Query: 87  PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
                K ++H          F +C +D      + +  +  + ELV    +         
Sbjct: 90  LKEQQKIIQHLEREGIKHVVFTNCVKD-----ENVKQVIPTVTELVGSSYRYHRGEHVEY 144

Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
            +MV+GVPNVGKS+LINS+ +  L       K K   VG  PG+T+ +    ++  RP +
Sbjct: 145 CIMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCERPLM 198

Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
           ++LDTPGVL P IP +ETGLKLAL G++ D +VGEE +A +LL  LN
Sbjct: 199 FLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Bos taurus (taxid: 9913)

>sp|B7GGD6|RBGA_ANOFW Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rbgA PE=3 SV=1

 Score =  148 bits (374), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 21/226 (9%)

Query: 24  NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
            I WFPGHMA A R +  +LK+ D+V E+ D+RIP+SS +P +   ++ K R+I LNK D
Sbjct: 5   TIQWFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKPRIILLNKAD 64

Query: 84  LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK--------EVISREPT 135
           +A+P++  +WV  F + + D IAI++ S + V++++ + + KL+        + + R   
Sbjct: 65  MADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRPRA 124

Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
           +  ++VG+PNVGKS LIN +    +++            G  PGVT+     K+     +
Sbjct: 125 MRALIVGIPNVGKSTLINRLAGKHIAK-----------TGDTPGVTKAQQWIKVGK--EL 171

Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
            +LDTPG+L P   D E G KLA +G+IKD+++  + +A Y L  L
Sbjct: 172 ELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFL 217

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)

>sp|A9JTX2|MTG1_XENTR Mitochondrial GTPase 1 OS=Xenopus tropicalis GN=mtg1 PE=2 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 143/275 (52%), Gaps = 28/275 (10%)

Query: 1   MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
           M L  +++K    GE          +WFPGHMA   + +K +LK  D ++EV D+RIPLS
Sbjct: 1   MRLSWLLRKSFDFGEREVA------HWFPGHMAKGLKQMKTKLKNLDCIVEVHDARIPLS 54

Query: 61  SAHPGLQPQLSAKRRVIALNKKDLAN----PNILNKWVRH------FDSCKQDYIAINAH 110
             +P  Q  L  K  ++ LNK DLA+      IL +  +       F  C +D      +
Sbjct: 55  GRNPIFQDSLGMKPHLLILNKMDLADLTQKKRILAQLKQQGVGNVIFTDCVKD-----QN 109

Query: 111 SRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK 170
            +  V  + ELV    +          +MV+GVPNVGKS+LIN++ ++ L       K K
Sbjct: 110 IKHVVPVISELVGCSQRFHREENTETCIMVIGVPNVGKSSLINALRRMHL------RKGK 163

Query: 171 RATVGPLPGVTQDI-AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG 229
            + VG  PG+T+ +    +++  P I++ DTPGVL P I  +ETG+KLAL G+I D +VG
Sbjct: 164 ASRVGAEPGITRSVLTKIQVSESPLIFLFDTPGVLSPRIESVETGMKLALCGTILDHLVG 223

Query: 230 EERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSET 264
           E+ +A YLL +LN +    +  H       +  ET
Sbjct: 224 EDIMADYLLYILNQQMQHRYVEHYGLEKPCADIET 258

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Xenopus tropicalis (taxid: 8364)

>sp|E3TDS3|MTG1_ICTPU Mitochondrial GTPase 1 OS=Ictalurus punctatus GN=mtg1 PE=2 SV=1

 Score =  145 bits (365), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 134/231 (58%), Gaps = 26/231 (11%)

Query: 26  NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
           +WFPGHMA   + ++   +  D VIE+ D+RIP S  +P  Q  L  +  ++ LNK DLA
Sbjct: 27  HWFPGHMAKGLKQMRASPRKVDCVIEIHDARIPFSGRNPLFQENLDVRPHLLILNKMDLA 86

Query: 86  NPN----ILNKWVRHFDSCKQDYIAINAHSR-SSVQKLLELVELKLKEVISREP------ 134
           + +    IL +  R  D  K   +      R +SV+K++ LV     ++I   P      
Sbjct: 87  DTSDKMSILKQLER--DGVKNVLLTDCLKQRDTSVKKIIPLVT----DLIENAPRFHREE 140

Query: 135 --TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAH 191
             +  +MV+GVPNVGKS+LIN+I +  L      +K K + VG  PG+T+ +    ++  
Sbjct: 141 NRSYCLMVIGVPNVGKSSLINAIRRTNL------KKGKASRVGGEPGITKAVLTKIQVCE 194

Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
           RP I++LDTPGVL P I +IETG+KLAL G+I D +VGE+ IA YLL  LN
Sbjct: 195 RPVIHLLDTPGVLPPKIENIETGMKLALCGTILDHLVGEDIIADYLLFSLN 245

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Ictalurus punctatus (taxid: 7998)

>sp|C5D8U8|RBGA_GEOSW Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) GN=rbgA PE=3 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 21/226 (9%)

Query: 24  NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
            I WFPGHMA A R ++ +LK+ D+V E+ D+RIPLSS +P +   L  K R++ LNK D
Sbjct: 4   TIQWFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKAD 63

Query: 84  LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------- 135
           +A+  +  +W+ +F+  +   +AI+A + + +++++   +  LK+  ++           
Sbjct: 64  MADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRP 123

Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
           +  ++VG+PNVGKS LIN +    +++            G  PGVT+     K+     +
Sbjct: 124 MRALIVGIPNVGKSTLINRLAGRNIAK-----------TGDKPGVTKAQQWIKVGK--EM 170

Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
            +LDTPG+L P   D E GLKLA +G+IKD+++  + +A Y L  L
Sbjct: 171 ELLDTPGILWPKFEDEEVGLKLATTGAIKDTILNLQDVAVYALNFL 216

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Geobacillus sp. (strain WCH70) (taxid: 471223)

>sp|Q17EJ1|MTG1_AEDAE Mitochondrial GTPase 1 OS=Aedes aegypti GN=AAEL003813 PE=3 SV=1

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 39/244 (15%)

Query: 25  INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
           +NWFPGHM    + ++ +LK  D VIEV D+RIPLS  +   +  +S  K  ++ LNKKD
Sbjct: 17  LNWFPGHMGKGMKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHILVLNKKD 76

Query: 84  LANPNILNKWV----------RH--FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI- 130
             +  +  + V          RH  F +CK         S + ++K++ L +    ++I 
Sbjct: 77  KIDRRLQGRVVDRLQQEDSEARHILFTNCKD-------QSCNGIRKVMPLAQ----DLIL 125

Query: 131 -------SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
                  + +    +M++GVPNVGKS+LIN +    L+      K   + VG + G+T+ 
Sbjct: 126 SSNRFNRADQKEYCIMIIGVPNVGKSSLINVLRNRHLN------KKGASQVGAVAGITRS 179

Query: 184 IAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
           +    KI+  P +Y+LDTPG+L P+I D ETGL+LAL   ++D +VGEE IA YLL +LN
Sbjct: 180 VLNKIKISEDPLVYLLDTPGILKPNIADTETGLRLALVSCLQDHLVGEELIADYLLYLLN 239

Query: 243 TRGT 246
            RG 
Sbjct: 240 KRGN 243

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Aedes aegypti (taxid: 7159)

>sp|A8FD69|RBGA_BACP2 Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain SAFR-032) GN=rbgA PE=3 SV=1

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 20/225 (8%)

Query: 24  NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
            I WFPGHMA A R +  +LK+ D+V E+ D+RIP+SS +P ++  L  K +++ LNK D
Sbjct: 2   TIQWFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKAD 61

Query: 84  LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
            A+P +  +W  HF+      +AIN+     + +++   +  LKE   R      +P  +
Sbjct: 62  KADPRVTKEWQAHFEQQGVRSLAINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAI 121

Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
             +++G+PNVGKS LIN +            K   A  G  PG+T      K+     + 
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--EME 168

Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           +LDTPG+L P   D + GL+LA++G+IKDS++  + +A Y L  L
Sbjct: 169 LLDTPGILWPKFEDEKVGLRLAVTGAIKDSIINLQDVAVYGLRFL 213

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

>sp|Q819W8|RBGA_BACCR Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rbgA PE=3 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)

Query: 25  INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
           I WFPGHMA A R +  +LK+ D+VIE+ D+R+PLSS +P +   ++ K R++ LNK D+
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query: 85  ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
           A+  +  +W+ +F       I+INA +   ++++    ++ +KE          R   + 
Sbjct: 63  ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
            ++VG+PNVGKS LIN +            K   A  G  PGVT      K+     + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169

Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
           LDTPG+L P   D   GL+LA +G+IKDS++  + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
224086974	376	predicted protein [Populus trichocarpa]	0.986	0.984	0.809	1e-174
356504771	377	PREDICTED: mitochondrial GTPase 1-like [	0.984	0.978	0.8	1e-173
225441866	376	PREDICTED: mitochondrial GTPase 1 isofor	0.981	0.978	0.838	1e-171
225441868	377	PREDICTED: mitochondrial GTPase 1 isofor	0.978	0.973	0.840	1e-171
356572022	377	PREDICTED: mitochondrial GTPase 1-like [	0.984	0.978	0.794	1e-171
297739639	362	unnamed protein product [Vitis vinifera]	0.949	0.983	0.851	1e-168
297824129	386	GTP-binding family protein [Arabidopsis	0.992	0.963	0.775	1e-168
30688739	386	P-loop containing nucleoside triphosphat	0.992	0.963	0.775	1e-167
2618702	391	unknown protein [Arabidopsis thaliana]	0.992	0.951	0.765	1e-165
449463330	375	PREDICTED: mitochondrial GTPase 1-like [	0.976	0.976	0.781	1e-164

>gi|224086974|ref|XP_002308022.1| predicted protein [Populus trichocarpa] gi|222853998|gb|EEE91545.1| predicted protein [Populus trichocarpa]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 302/373 (80%), Positives = 340/373 (91%), Gaps = 3/373 (0%)

Query: 2   GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
           GLK I+KKG+G  EMGF  GGG INWFPGHMAAATRAI+ RLK++DLVIEVRDSRIPLSS
Sbjct: 4   GLKGIVKKGIG--EMGFNAGGGAINWFPGHMAAATRAIRDRLKLADLVIEVRDSRIPLSS 61

Query: 62  AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
            +  LQPQL+AKRRVIALNKKDLANPNI++KW+R+FDSCKQD I I+AHS+SSVQKLLE+
Sbjct: 62  TNEDLQPQLAAKRRVIALNKKDLANPNIMHKWIRYFDSCKQDCIPISAHSKSSVQKLLEV 121

Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
           VE KLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRF VQ K KRATVGPLPGVT
Sbjct: 122 VEFKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFAVQGKKKRATVGPLPGVT 181

Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           QDIAG+KIAH+PSIYVLDTPGVLVPSIPDIETGLKL+L+GS+KDSVVGEERIA+YLLAVL
Sbjct: 182 QDIAGYKIAHKPSIYVLDTPGVLVPSIPDIETGLKLSLAGSVKDSVVGEERIARYLLAVL 241

Query: 242 NTRGTPLHWRHLNNR-TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
           NTRGTPLHW+H NNR  +  + E+E KH+Y+ KDLRP  RKPP+ SDV Y+E+LVT VQ 
Sbjct: 242 NTRGTPLHWKHWNNRKMDGIRYESEEKHKYDPKDLRPNMRKPPSVSDVVYVENLVTEVQC 301

Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
           A++ +L+EF+GNVEDENDLE+LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTLFRTGKL
Sbjct: 302 AMYKTLAEFNGNVEDENDLENLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGKL 361

Query: 361 GPFILDDVPDANS 373
           G FILDDVP+ N+
Sbjct: 362 GCFILDDVPETNT 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504771|ref|XP_003521168.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/370 (80%), Positives = 332/370 (89%), Gaps = 1/370 (0%)

Query: 2   GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
           GLK ++KKGLGLG+M F  GGG I WFPGHMAAATRAI+HRLK++DLVIEVRD+RIPLSS
Sbjct: 3   GLKELLKKGLGLGDMAFNAGGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPLSS 62

Query: 62  AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
           A+  LQP LSAKRRV+ALNKKDLANPNI++KW  +F++C Q+ +AINAHS+SSV+KLLE+
Sbjct: 63  ANADLQPHLSAKRRVVALNKKDLANPNIMHKWTHYFETCNQNCVAINAHSKSSVKKLLEV 122

Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
           VE KLKEVI +EPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRA VGPLPGVT
Sbjct: 123 VEFKLKEVICKEPTLLVMVVGVPNVGKSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVT 182

Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           QDIAGFKIAH+PSIYVLDTPGVLVPSI DIETGLKLAL+GS+KDSVVGEERI QYLLAVL
Sbjct: 183 QDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIVQYLLAVL 242

Query: 242 NTRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
           NTRGTPLHW+HLNN R +  + E E  HEY+LK+L+PKRR  PN SD+ Y+EDLV  VQR
Sbjct: 243 NTRGTPLHWKHLNNRRIDGIEYEAEENHEYSLKNLKPKRRNLPNRSDLVYVEDLVMQVQR 302

Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
           AL+ SLSEF+GNVEDE+DLESLI+ QF  LQ+ALKIPHKASEARLMVSKKFLTLFRTGKL
Sbjct: 303 ALYSSLSEFNGNVEDESDLESLIDLQFSALQKALKIPHKASEARLMVSKKFLTLFRTGKL 362

Query: 361 GPFILDDVPD 370
           GPFILDDVPD
Sbjct: 363 GPFILDDVPD 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441866|ref|XP_002284228.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/371 (83%), Positives = 341/371 (91%), Gaps = 3/371 (0%)

Query: 2   GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
           G++ ++KKGLG  EMGF KGGG INWFPGHMAAATRAI+HRLK+SDLVIEVRD+R+PLSS
Sbjct: 3   GVRSMVKKGLG--EMGFNKGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSS 60

Query: 62  AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
           A+  LQP LS KRRVIALNKKDLANPNI++KW  +FDSCKQD I+INAHSRSSV+KLLEL
Sbjct: 61  ANEDLQPSLSGKRRVIALNKKDLANPNIMHKWTHYFDSCKQDCISINAHSRSSVKKLLEL 120

Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
           VELKL+EVISREPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRATVGPLPGVT
Sbjct: 121 VELKLREVISREPTLLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVT 180

Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           QDIAGFKIAH+PSIYVLDTPGVLVPSIPDIETGLKLAL+GS+KDSVVGEERIAQYLLAVL
Sbjct: 181 QDIAGFKIAHQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVL 240

Query: 242 NTRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
           NTR TPLHWRHLNN R E  ++E E+KH+YNLKDL P +RK PN SDV YIEDLVT VQ 
Sbjct: 241 NTRSTPLHWRHLNNRRIEELRNEYEDKHDYNLKDLLPNKRKLPNRSDVKYIEDLVTEVQC 300

Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
           ALHV+LSEF+GN+E+ENDLESLIEQQFE LQ+A+KIPHKASEAR MVSKK LTLFRTGKL
Sbjct: 301 ALHVTLSEFNGNLEEENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKLLTLFRTGKL 360

Query: 361 GPFILDDVPDA 371
           GPFILDDVPD+
Sbjct: 361 GPFILDDVPDS 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441868|ref|XP_002284232.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/370 (84%), Positives = 340/370 (91%), Gaps = 3/370 (0%)

Query: 3   LKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA 62
           L+ ++KKGLG  EMGF KGGG INWFPGHMAAATRAI+HRLK+SDLVIEVRD+R+PLSSA
Sbjct: 5   LRSMVKKGLG--EMGFNKGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSSA 62

Query: 63  HPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV 122
           +  LQP LS KRRVIALNKKDLANPNI++KW  +FDSCKQD I+INAHSRSSV+KLLELV
Sbjct: 63  NEDLQPSLSGKRRVIALNKKDLANPNIMHKWTHYFDSCKQDCISINAHSRSSVKKLLELV 122

Query: 123 ELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQ 182
           ELKL+EVISREPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRATVGPLPGVTQ
Sbjct: 123 ELKLREVISREPTLLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQ 182

Query: 183 DIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
           DIAGFKIAH+PSIYVLDTPGVLVPSIPDIETGLKLAL+GS+KDSVVGEERIAQYLLAVLN
Sbjct: 183 DIAGFKIAHQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLN 242

Query: 243 TRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRA 301
           TR TPLHWRHLNN R E  ++E E+KH+YNLKDL P +RK PN SDV YIEDLVT VQ A
Sbjct: 243 TRSTPLHWRHLNNRRIEELRNEYEDKHDYNLKDLLPNKRKLPNRSDVKYIEDLVTEVQCA 302

Query: 302 LHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLG 361
           LHV+LSEF+GN+E+ENDLESLIEQQFE LQ+A+KIPHKASEAR MVSKK LTLFRTGKLG
Sbjct: 303 LHVTLSEFNGNLEEENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKLLTLFRTGKLG 362

Query: 362 PFILDDVPDA 371
           PFILDDVPD+
Sbjct: 363 PFILDDVPDS 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572022|ref|XP_003554169.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/370 (79%), Positives = 329/370 (88%), Gaps = 1/370 (0%)

Query: 2   GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
           GLK ++KKGLGLG+M F  GGG I WFPGHMAAATRAI+HRLK++DLVIEVRD+RIP SS
Sbjct: 3   GLKELLKKGLGLGDMAFNAGGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPFSS 62

Query: 62  AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
           A+  LQP LSAKRRV+ALNKKDLANPNI++KW  +F+SC Q+ +AINAHS SSV+KLLE+
Sbjct: 63  ANADLQPHLSAKRRVVALNKKDLANPNIMHKWTHYFESCNQNCVAINAHSMSSVKKLLEV 122

Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
           VE KLKEVI REPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRA VGPLPGVT
Sbjct: 123 VEFKLKEVICREPTLLVMVVGVPNVGKSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVT 182

Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           QDIAGFKIAH+PSIYVLDTPGVLVPSI DIETGLKLAL+ S+KDSVVGEERIAQYLLAVL
Sbjct: 183 QDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAESVKDSVVGEERIAQYLLAVL 242

Query: 242 NTRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
           +TRGTPLHW HLNN R +  + E E   EY+LK+L+PKRR  PN SD+ Y+EDLV GVQR
Sbjct: 243 DTRGTPLHWNHLNNRRIDGIEYEAEENPEYSLKNLKPKRRNLPNRSDLVYVEDLVMGVQR 302

Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
           AL+ +L+EFDGNVEDE+DLESLI+ QF  LQ+ALKIPHKASEARLMVSKKFLTLFRTGKL
Sbjct: 303 ALYSTLTEFDGNVEDESDLESLIDLQFSALQKALKIPHKASEARLMVSKKFLTLFRTGKL 362

Query: 361 GPFILDDVPD 370
           GPFILDDVP+
Sbjct: 363 GPFILDDVPN 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739639|emb|CBI29821.3| unnamed protein product [Vitis vinifera]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 304/357 (85%), Positives = 330/357 (92%), Gaps = 1/357 (0%)

Query: 16  MGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
           MGF KGGG INWFPGHMAAATRAI+HRLK+SDLVIEVRD+R+PLSSA+  LQP LS KRR
Sbjct: 1   MGFNKGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSSANEDLQPSLSGKRR 60

Query: 76  VIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT 135
           VIALNKKDLANPNI++KW  +FDSCKQD I+INAHSRSSV+KLLELVELKL+EVISREPT
Sbjct: 61  VIALNKKDLANPNIMHKWTHYFDSCKQDCISINAHSRSSVKKLLELVELKLREVISREPT 120

Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
           LLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRATVGPLPGVTQDIAGFKIAH+PSI
Sbjct: 121 LLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQDIAGFKIAHQPSI 180

Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
           YVLDTPGVLVPSIPDIETGLKLAL+GS+KDSVVGEERIAQYLLAVLNTR TPLHWRHLNN
Sbjct: 181 YVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRSTPLHWRHLNN 240

Query: 256 -RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVE 314
            R E  ++E E+KH+YNLKDL P +RK PN SDV YIEDLVT VQ ALHV+LSEF+GN+E
Sbjct: 241 RRIEELRNEYEDKHDYNLKDLLPNKRKLPNRSDVKYIEDLVTEVQCALHVTLSEFNGNLE 300

Query: 315 DENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDA 371
           +ENDLESLIEQQFE LQ+A+KIPHKASEAR MVSKK LTLFRTGKLGPFILDDVPD+
Sbjct: 301 EENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKLLTLFRTGKLGPFILDDVPDS 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824129|ref|XP_002879947.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297325786|gb|EFH56206.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/374 (77%), Positives = 332/374 (88%), Gaps = 2/374 (0%)

Query: 1   MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
           M LK+ +KKGL +G M F K  G INWFPGHMAAATRAI++RLK+SDLVIEVRD+RIPLS
Sbjct: 3   MMLKKTVKKGL-IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLS 61

Query: 61  SAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE 120
           SA+  LQ Q+SAKRR+IALNKKDLANPN+LNKW RHF+S KQD IAINAHSRSSV KLL+
Sbjct: 62  SANEDLQSQMSAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLD 121

Query: 121 LVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180
           LVELKLKEVI+REPTLLVMVVGVPNVGKSALINS+HQIA +RFPVQE+ KRATVGPLPGV
Sbjct: 122 LVELKLKEVIAREPTLLVMVVGVPNVGKSALINSVHQIAAARFPVQERLKRATVGPLPGV 181

Query: 181 TQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAV 240
           TQDIAGFKIAHRPSIYVLD+PGVLVPSIPDIETGLKLALSGS+KDSVVGEERIAQY LA+
Sbjct: 182 TQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAI 241

Query: 241 LNTRGTPLHWRHL-NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
           LN RGTPLHW++L   R E   ++  +K  YNLKDLR +R K P++S + Y+ D+++ VQ
Sbjct: 242 LNIRGTPLHWKYLVEGRNEGPHADCIDKPSYNLKDLRHQRTKQPDSSALHYVGDMISEVQ 301

Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGK 359
           R+L+++LSEFDG+ EDENDLE LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTLFRTG+
Sbjct: 302 RSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGR 361

Query: 360 LGPFILDDVPDANS 373
           LGPFILDDVP+  +
Sbjct: 362 LGPFILDDVPETET 375

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688739|ref|NP_850353.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|20466544|gb|AAM20589.1| unknown protein [Arabidopsis thaliana] gi|23198342|gb|AAN15698.1| unknown protein [Arabidopsis thaliana] gi|32396052|gb|AAP41843.1| short integuments 2 [Arabidopsis thaliana] gi|330254920|gb|AEC10014.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/374 (77%), Positives = 331/374 (88%), Gaps = 2/374 (0%)

Query: 1   MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
           M LK+ +KKGL +G M F K  G INWFPGHMAAATRAI++RLK+SDLVIEVRD+RIPLS
Sbjct: 3   MMLKKTVKKGL-IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLS 61

Query: 61  SAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE 120
           SA+  LQ Q+SAKRR+IALNKKDLANPN+LNKW RHF+S KQD IAINAHSRSSV KLL+
Sbjct: 62  SANEDLQSQMSAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLD 121

Query: 121 LVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180
           LVELKLKEVI+REPTLLVMVVGVPNVGKSALINSIHQIA +RFPVQE+ KRATVGPLPGV
Sbjct: 122 LVELKLKEVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGV 181

Query: 181 TQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAV 240
           TQDIAGFKIAHRPSIYVLD+PGVLVPSIPDIETGLKLALSGS+KDSVVGEERIAQY LA+
Sbjct: 182 TQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAI 241

Query: 241 LNTRGTPLHWRHL-NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
           LN RGTPLHW++L     E   ++  +K  YNLKDLR +R K P++S + Y+ D+++ VQ
Sbjct: 242 LNIRGTPLHWKYLVEGINEGPHADCIDKPSYNLKDLRHQRTKQPDSSALHYVGDMISEVQ 301

Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGK 359
           R+L+++LSEFDG+ EDENDLE LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTLFRTG+
Sbjct: 302 RSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGR 361

Query: 360 LGPFILDDVPDANS 373
           LGPFILDDVP+  +
Sbjct: 362 LGPFILDDVPETET 375

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2618702|gb|AAB84349.1| unknown protein [Arabidopsis thaliana]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/379 (76%), Positives = 331/379 (87%), Gaps = 7/379 (1%)

Query: 1   MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
           M LK+ +KKGL +G M F K  G INWFPGHMAAATRAI++RLK+SDLVIEVRD+RIPLS
Sbjct: 3   MMLKKTVKKGL-IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLS 61

Query: 61  SAHPGLQPQLSAKRRVIALNKKDLANPNILN-----KWVRHFDSCKQDYIAINAHSRSSV 115
           SA+  LQ Q+SAKRR+IALNKKDLANPN+LN     KW RHF+S KQD IAINAHSRSSV
Sbjct: 62  SANEDLQSQMSAKRRIIALNKKDLANPNVLNVIRFFKWTRHFESSKQDCIAINAHSRSSV 121

Query: 116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVG 175
            KLL+LVELKLKEVI+REPTLLVMVVGVPNVGKSALINSIHQIA +RFPVQE+ KRATVG
Sbjct: 122 MKLLDLVELKLKEVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFPVQERLKRATVG 181

Query: 176 PLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQ 235
           PLPGVTQDIAGFKIAHRPSIYVLD+PGVLVPSIPDIETGLKLALSGS+KDSVVGEERIAQ
Sbjct: 182 PLPGVTQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQ 241

Query: 236 YLLAVLNTRGTPLHWRHL-NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDL 294
           Y LA+LN RGTPLHW++L     E   ++  +K  YNLKDLR +R K P++S + Y+ D+
Sbjct: 242 YFLAILNIRGTPLHWKYLVEGINEGPHADCIDKPSYNLKDLRHQRTKQPDSSALHYVGDM 301

Query: 295 VTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTL 354
           ++ VQR+L+++LSEFDG+ EDENDLE LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTL
Sbjct: 302 ISEVQRSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFLTL 361

Query: 355 FRTGKLGPFILDDVPDANS 373
           FRTG+LGPFILDDVP+  +
Sbjct: 362 FRTGRLGPFILDDVPETET 380

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463330|ref|XP_004149387.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus] gi|449503786|ref|XP_004162176.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/370 (78%), Positives = 322/370 (87%), Gaps = 4/370 (1%)

Query: 2   GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
           G+  ++KK LG  +M FT GGG INWFPGHMAAATRAI+HRLK++D+VIEVRDSRIPLSS
Sbjct: 3   GITGVVKKALG--DMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 60

Query: 62  AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
           A+  LQP L++KRRVIALNKKDLANPNI+NKWV  FDSC QD + INAHS+SSV+KLLEL
Sbjct: 61  ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 120

Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
           VE KLKE ISREPTLLVMVVGVPNVGKSALINSIHQIA  RFPVQEK KRATVGPLPGVT
Sbjct: 121 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEKRKRATVGPLPGVT 180

Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           QDIAG+KIAH+PSIYVLDTPGVLVPSI DIETGLKLAL+GS+KD+VVGEERIAQYLLAVL
Sbjct: 181 QDIAGYKIAHQPSIYVLDTPGVLVPSIQDIETGLKLALAGSVKDAVVGEERIAQYLLAVL 240

Query: 242 NTRGTPLHW-RHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
           N+R TP HW RHLNN R E  + E E +H++NL DL+PKRR PPN SDV Y+EDLVT VQ
Sbjct: 241 NSRRTPFHWRRHLNNRRVEGIRYEPEERHKFNLNDLQPKRRAPPNKSDVVYVEDLVTEVQ 300

Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGK 359
             L+ +LSEFDGNVEDEN LESLIE QFE LQ+A+K+ HKA+EARL VSKK LTLFR GK
Sbjct: 301 CTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLLTLFRAGK 360

Query: 360 LGPFILDDVP 369
           LG FILDDVP
Sbjct: 361 LGQFILDDVP 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2062657	386	AT2G41670 "AT2G41670" [Arabido	0.992	0.963	0.740	2.6e-143
UNIPROTKB|Q53KJ1	370	Os11g0447300 "Short integument	0.978	0.991	0.631	1.7e-121
UNIPROTKB|Q8S7M9	370	OSJNBa0095C07.33 "Expressed pr	0.896	0.908	0.412	1.6e-61
TAIR|locus:2139197	377	AT4G10650 "AT4G10650" [Arabido	0.893	0.888	0.388	3.7e-55
RGD|6497155	326	LOC100910751 "mitochondrial GT	0.568	0.653	0.4	5.7e-38
UNIPROTKB|Q4PS77	332	MTG1 "Mitochondrial GTPase 1"	0.56	0.632	0.369	6.4e-37
UNIPROTKB|E1C7T7	332	MTG1 "Mitochondrial GTPase 1"	0.562	0.635	0.389	1e-36
UNIPROTKB|Q9BT17	334	MTG1 "Mitochondrial GTPase 1"	0.56	0.628	0.396	1.3e-36
MGI|MGI:2685015	326	Mtg1 "mitochondrial GTPase 1 h	0.568	0.653	0.386	2.2e-36
UNIPROTKB|I3LR29	336	LOC100153322 "Mitochondrial GT	0.584	0.651	0.377	3.5e-36

TAIR|locus:2062657 AT2G41670 "AT2G41670" [Arabidopsis thaliana (taxid:3702)]

 Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
 Identities = 277/374 (74%), Positives = 317/374 (84%)

Query:     1 MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
             M LK+ +KKGL +G M F K  G INWFPGHMAAATRAI++RLK+SDLVIEVRD+RIPLS
Sbjct:     3 MMLKKTVKKGL-IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLS 61

Query:    61 SAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXX 120
             SA+  LQ Q+SAKRR+IALNKKDLANPN+LNKW RHF+S KQD IAINAHSRSS      
Sbjct:    62 SANEDLQSQMSAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLD 121

Query:   121 XXXXXXXXXISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180
                      I+REPTLLVMVVGVPNVGKSALINSIHQIA +RFPVQE+ KRATVGPLPGV
Sbjct:   122 LVELKLKEVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGV 181

Query:   181 TQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAV 240
             TQDIAGFKIAHRPSIYVLD+PGVLVPSIPDIETGLKLALSGS+KDSVVGEERIAQY LA+
Sbjct:   182 TQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAI 241

Query:   241 LNTRGTPLHWRHL-NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
             LN RGTPLHW++L     E   ++  +K  YNLKDLR +R K P++S + Y+ D+++ VQ
Sbjct:   242 LNIRGTPLHWKYLVEGINEGPHADCIDKPSYNLKDLRHQRTKQPDSSALHYVGDMISEVQ 301

Query:   300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGK 359
             R+L+++LSEFDG+ EDENDLE LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTLFRTG+
Sbjct:   302 RSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGR 361

Query:   360 LGPFILDDVPDANS 373
             LGPFILDDVP+  +
Sbjct:   362 LGPFILDDVPETET 375

GO:0005525 "GTP binding" evidence=ISS;IBA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q53KJ1 Os11g0447300 "Short integuments 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 233/369 (63%), Positives = 285/369 (77%)

Query:     3 LKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA 62
             ++ + + G    EM F  GGG +NWFPGHMAAA+RAI+ RLK++DLV+EVRD+RIPLSSA
Sbjct:     1 MRGLARAGKRASEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSSA 60

Query:    63 HPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXXXX 122
             +  LQP L++KRR++ALNKKDLANPNI+N+W+ HF+SCKQD I+INAHS SS        
Sbjct:    61 NEDLQPVLASKRRILALNKKDLANPNIMNRWLHHFESCKQDCISINAHSTSSVSQLLGLV 120

Query:   123 XXXXXXXISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQ 182
                    IS+EPTLLVMVVGVPNVGKSALINSIH+I  SRFPVQ+K KRATVGPLPGVTQ
Sbjct:   121 EFKLKEAISKEPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQ 180

Query:   183 DIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
             DIAG+KI+ +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++LN
Sbjct:   181 DIAGYKISSQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLN 240

Query:   243 TRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRAL 302
              R TPLHW  L  R E    +  N +E + +D  P+RR+ PN SD  Y++D+V  VQR L
Sbjct:   241 IRKTPLHWERLVYRREQFNEDAFNSNEKDYRD-SPRRRRRPNNSDALYVQDMVMEVQRTL 299

Query:   303 HVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTGKLG 361
               +  +F  N EDEN+LESLI+ Q   L++  +IPHK   E     SKK LTLFR+GKLG
Sbjct:   300 CSTFMDFADNTEDENELESLIDSQLVALRKVFRIPHKPFDETHGPASKKLLTLFRSGKLG 359

Query:   362 PFILDDVPD 370
             PFILDD+PD
Sbjct:   360 PFILDDLPD 368

GO:0003924 "GTPase activity" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q8S7M9 OSJNBa0095C07.33 "Expressed protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 610 (219.8 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 144/349 (41%), Positives = 208/349 (59%)

Query:    27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNKKDL 84
             W+  HMAAA RAI+ RL + DLV+EVRD+R+P +SA   L+ +     +RR++ LNK DL
Sbjct:    23 WYGRHMAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADL 82

Query:    85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXXXXXXXXXXXISREP--TLLVMVVG 142
             A+P+   KW+ +        +A+N+HSR                    E   T  V++VG
Sbjct:    83 ADPSQTEKWMAYMKQTSCSCVALNSHSREGIKELLNAVRAKIREIKLGESDCTGTVLLVG 142

Query:   143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPG 202
             +PNVGKSA++N++H+I       + K K A V   PG T+DI+G+K+A  P+IYVLDTPG
Sbjct:   143 IPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPNIYVLDTPG 202

Query:   203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQS 262
             VL P   + E+G  LAL+G+IKDS++ E  IAQ+LLA+LN+R T   W ++N   ++   
Sbjct:   203 VLSPVFFNDESGPLLALTGAIKDSMMQEFEIAQFLLAILNSRETYKKWENMNQAGDMPSF 262

Query:   263 ETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESL 322
                  H  +      KR+    ASD T  + +V  V++ L  S+S F G +E+EN+L+SL
Sbjct:   263 S----HAMSSSSHHNKRQY---ASDHTQ-DFVVKAVRQVLFDSISSFKGYLENENELKSL 314

Query:   323 IEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDVPD 370
             IE QF  LQ A ++    SE  R +V+ K L L+RTG+LG + LD  PD
Sbjct:   315 IECQFIALQEAFRVSADLSEDVRKLVAMKLLNLYRTGRLGRYTLDCAPD 363

GO:0003924 "GTPase activity" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

TAIR|locus:2139197 AT4G10650 "AT4G10650" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 137/353 (38%), Positives = 208/353 (58%)

Query:    24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP--QLSAKRRVIALNK 81
             N  W+  HMAAA RAI  R+ + D V+E+RD+RIPLSS +  L+    L +KR +I LNK
Sbjct:    25 NRRWYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELLRKFSPLPSKR-IIVLNK 83

Query:    82 KDLANPNILNKWVRHFDSCKQDYI--AINAHSRSSXXXXXXXXXXXXXXXISREP---TL 136
              +LA+P  L K + +F+  +++Y+  A+N+H++                         T 
Sbjct:    84 MELADPLELKKCIDYFE--ERNYLSYAVNSHNKDCVKQLLNFLQSQVRELHKAGHSGHTT 141

Query:   137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
              +M++G+PNVGKSAL NS+H I       + K K  TV   PG T+DI   KI   P++Y
Sbjct:   142 TMMLLGIPNVGKSALSNSLHHIGRISAAEKGKLKHTTVSSQPGDTKDIMSLKIGSHPNVY 201

Query:   197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
             VLDTPG+  P++ D E   KLAL+G+I D +VGE ++A+  L +LN+      W  L   
Sbjct:   202 VLDTPGIFPPNLYDAEICAKLALTGAIPDDIVGELKLARLFLTILNSSHEYKKWAKLCKS 261

Query:   257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDE 316
              ++++S ++   E +  D + KR+    A+D T  + +V  V+R L+ ++S FDGN+EDE
Sbjct:   262 QDLTESLSD---ESSKSDAKHKRQY---ATDHTQ-DFIVYDVRRVLYETISAFDGNLEDE 314

Query:   317 NDLESLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDV 368
               + +LIE QF  L+  L++P +ASE A L V+ K L L+RTG+LG + L+ V
Sbjct:   315 ISMGNLIETQFAALRSVLRVPEEASEFADLRVASKILNLYRTGRLGHYTLEHV 367

GO:0005525 "GTP binding" evidence=ISS;IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|6497155 LOC100910751 "mitochondrial GTPase 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 90/225 (40%), Positives = 123/225 (54%)

Query:    27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
             WFPGHMA   + ++  LK+ D VIEV D+RIP S  +P  Q  L  K  ++ LNK DLA+
Sbjct:    29 WFPGHMAKGLKKMQSSLKLVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLAD 88

Query:    87 PNILNKWVRHFDSCK-QDYIAINA----HSRSSXXXXXXXXXXXXXXXISREPTLLVMVV 141
                  K V+H +    ++ I  N     + +                  +  P   +MVV
Sbjct:    89 LTEQQKIVQHLEEKGLRNVIFTNCIKDENIKQIIPKVTELIGCSYRYHRAENPEYCIMVV 148

Query:   142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDT 200
             GVPNVGKS+LINS+ +  L         K A VG  PG+T+ +    ++  RP +++LDT
Sbjct:   149 GVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAVTSRIQVCERPLMFLLDT 202

Query:   201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
             PGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN  G
Sbjct:   203 PGVLAPRIQSVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHG 247

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q4PS77 MTG1 "Mitochondrial GTPase 1" [Bos taurus (taxid:9913)]

 Score = 360 (131.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 82/222 (36%), Positives = 121/222 (54%)

Query:    27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
             WFPGHMA   + ++  L++ D +IEV D++IPLS  +P  Q  L  K  ++ LNK DLA+
Sbjct:    30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89

Query:    87 PNILNKWVRHFDSCKQDYIAI-----NAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVV 141
                  K ++H +     ++       + + +                         +MV+
Sbjct:    90 LKEQQKIIQHLEREGIKHVVFTNCVKDENVKQVIPTVTELVGSSYRYHRGEHVEYCIMVI 149

Query:   142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDT 200
             GVPNVGKS+LINS+ +  L       K K   VG  PG+T+ +    ++  RP +++LDT
Sbjct:   150 GVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDT 203

Query:   201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
             PGVL P IP +ETGLKLAL G++ D +VGEE +A +LL  LN
Sbjct:   204 PGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E1C7T7 MTG1 "Mitochondrial GTPase 1" [Gallus gallus (taxid:9031)]

 Score = 366 (133.9 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 88/226 (38%), Positives = 127/226 (56%)

Query:    26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSR---IPLSSAHPGLQPQLSAKRRVIALNKK 82
             +WFPGHMA   R ++  L+ +D ++EV D+R   IPLS  +P LQ  L  +  ++ LNK 
Sbjct:    38 SWFPGHMAKGLRQMRASLRRADCLVEVHDARQPHIPLSGRNPVLQEVLGIRPHLLVLNKM 97

Query:    83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXXXXXXXXXXXISR----EPT-LL 137
             DLA+P   ++ +         Y+      R S                 R    E T   
Sbjct:    98 DLADPRQQSRVLEQLRQQGCSYVVFTDCQRDSNVKKIVPLVAKLVNSSPRYHRAESTEYS 157

Query:   138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
             +MV+GVPNVGKS+LINS+ ++ L      +K K   VG  PGVT+ +    ++   P +Y
Sbjct:   158 IMVIGVPNVGKSSLINSLRRLHL------KKEKPQPVGGEPGVTKAVLTRIQVCETPLVY 211

Query:   197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
             ++DTPGVL P + D+ETG+KLAL G+I+D +VGE+ +A YLL VLN
Sbjct:   212 LVDTPGVLPPKLADVETGMKLALCGAIRDHLVGEDIMADYLLYVLN 257

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9BT17 MTG1 "Mitochondrial GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 88/222 (39%), Positives = 124/222 (55%)

Query:    27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
             WFPGHMA   + ++  LK+ D +IEV D+RIPLS  +P  Q  L  K  ++ LNK DLA+
Sbjct:    30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89

Query:    87 PNILNKWVRHFDS-CKQDYIAINAHSRSSXXXXX--XXXXXXXXXXISREPTL--LVMVV 141
                  K ++H +    ++ I  N     +                   R+  L   +MV+
Sbjct:    90 LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLEYCIMVI 149

Query:   142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDT 200
             GVPNVGKS+LINS+ +  L       K K   VG  PG+T+ +    +++ RP +++LDT
Sbjct:   150 GVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDT 203

Query:   201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
             PGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN
Sbjct:   204 PGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:2685015 Mtg1 "mitochondrial GTPase 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
 Identities = 87/225 (38%), Positives = 119/225 (52%)

Query:    27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
             WFPGHMA   + ++  LK  D VIEV D+RIP S  +P  Q  L  K  ++ LNK DLA+
Sbjct:    29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLAD 88

Query:    87 PNILNKWVRHFDSCKQDYIAI-----NAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVV 141
                  K V+  +      +       + + +                  +  P   +MVV
Sbjct:    89 LTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRYHRAETPEYCIMVV 148

Query:   142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDT 200
             GVPNVGKS+LINS+ +  L         K A VG  PG+T+ +    ++  RP +++LDT
Sbjct:   149 GVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDT 202

Query:   201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
             PGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN  G
Sbjct:   203 PGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHG 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|I3LR29 LOC100153322 "Mitochondrial GTPase 1" [Sus scrofa (taxid:9823)]

 Score = 352 (129.0 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 89/236 (37%), Positives = 129/236 (54%)

Query:    18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRI----PLSSAHPGLQPQLSA 72
             F  GG ++  WFPGHMA   R ++  LK+ D ++EV D+RI    PLS  +P  Q  L  
Sbjct:    20 FPVGGRDVARWFPGHMAKGLRKMQSSLKLVDCILEVHDARISFGIPLSGRNPLFQETLGL 79

Query:    73 KRRVIALNKKDLANPNILNKWVRHFD-SCKQDYIAINAHSRSSXXXXXXXXXXXXXXXIS 131
             K  ++ LNK DLA+     K ++H +    ++ I  N     +                 
Sbjct:    80 KPHLLVLNKMDLADLKEQQKIMQHLEREGLKNVIFTNCVKDENIKQIIPKVTELVGSSCR 139

Query:   132 --REPTL--LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG- 186
               R  ++   +MV+GVPNVGKS+LIN++ +  L       K K   VG  PG+T+ +   
Sbjct:   140 YHRGESVEYCIMVIGVPNVGKSSLINALRRQHL------RKGKATKVGGEPGITRAVMSR 193

Query:   187 FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
              ++  RP +++LDTPGVL P I ++ETGLKLAL G++ D +VGEE +A YLL  LN
Sbjct:   194 VQVCERPLMFLLDTPGVLAPRIQNVETGLKLALCGTVLDHLVGEETLADYLLYTLN 249

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	375
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	4e-65
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	2e-64
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	2e-58
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	1e-49
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	2e-22
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	3e-17
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	7e-16
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	3e-12
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-10
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	8e-10
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	1e-09
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	5e-09
cd00880	161	cd00880, Era_like, E	3e-06
PRK13796	365	PRK13796, PRK13796, GTPase YqeH; Provisional	1e-05
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	3e-05
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	1e-04
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	1e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	3e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	5e-04
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	5e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	5e-04
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	6e-04
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	7e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	8e-04
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	0.001
COG1159	298	COG1159, Era, GTPase [General function prediction	0.001
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	0.001
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	0.002
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.002
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	0.002
TIGR00437	591	TIGR00437, feoB, ferrous iron transporter FeoB	0.003
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	0.004

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score =  204 bits (521), Expect = 4e-65
 Identities = 83/184 (45%), Positives = 107/184 (58%), Gaps = 19/184 (10%)

Query: 27  WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
           WFPGHMA A R IK +LK+ D+VIEVRD+RIPLSS +P L   L  K R+I LNK DLA+
Sbjct: 1   WFPGHMAKALRQIKEKLKLVDVVIEVRDARIPLSSRNPDLDKILGNKPRLIVLNKADLAD 60

Query: 87  PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EPTLLVMV 140
           P    KW+++F S  +  + +NA +   V+KLL+  +  LKE             L  MV
Sbjct: 61  PAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLRAMV 120

Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
           VG+PNVGKS LIN +              K A VG  PGVT+     +I   P+I +LDT
Sbjct: 121 VGIPNVGKSTLINRLR-----------GKKVAKVGNKPGVTRGQQWIRIG--PNIELLDT 167

Query: 201 PGVL 204
           PG+L
Sbjct: 168 PGIL 171

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score =  206 bits (526), Expect = 2e-64
 Identities = 92/227 (40%), Positives = 128/227 (56%), Gaps = 20/227 (8%)

Query: 25  INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
           I WFPGHMA A R IK +LK+ D+VIEV D+RIPLSS +P +      K R+I LNK DL
Sbjct: 1   IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADL 60

Query: 85  ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
           A+P +  +W+++F+      +AINA     V+K+++  +  LKE   +          + 
Sbjct: 61  ADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLLNRPIR 120

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
            M+VG+PNVGKS LIN +              K A VG  PGVT+     K++    + +
Sbjct: 121 AMIVGIPNVGKSTLINRL-----------AGKKVAKVGNRPGVTKGQQWIKLS--DGLEL 167

Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
           LDTPG+L P   D E GLKLA +G+IKD  +  E +A +LL  L   
Sbjct: 168 LDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEH 214

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score =  190 bits (486), Expect = 2e-58
 Identities = 114/355 (32%), Positives = 159/355 (44%), Gaps = 80/355 (22%)

Query: 25  INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
           I WFPGHMA A R IK  LK+ D+VIEV D+RIPLSS +P +   +  K R++ LNK DL
Sbjct: 4   IQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDL 63

Query: 85  ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
           A+P +  KW+ +F+      +AINA     V+K+L+  +  LKE   R          + 
Sbjct: 64  ADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIR 123

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
            M++G+PNVGKS LIN +      +       K A  G  PGVT+     K+     + +
Sbjct: 124 AMIIGIPNVGKSTLINRL----AGK-------KIAKTGNRPGVTKAQQWIKL--GKGLEL 170

Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
           LDTPG+L P + D E GLKLAL+G+IKD  +  E +A + L  L+        +H   R 
Sbjct: 171 LDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLS--------KHYPERL 222

Query: 258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDEN 317
                    K  Y L +L            +  +E +    +R       E D       
Sbjct: 223 ---------KERYKLDEL--------PEDILELLEAI--ARKRGALRKGGEID------- 256

Query: 318 DLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDAN 372
                        +RA              S+  L  FR GKLG   L+    A 
Sbjct: 257 ------------YERA--------------SELLLNEFRNGKLGKITLETPEMAE 285

Length = 287

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score =  169 bits (429), Expect = 1e-49
 Identities = 83/223 (37%), Positives = 116/223 (52%), Gaps = 22/223 (9%)

Query: 25  INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
           I WFPGHM  A R +K  LK  D+V+EV D+R PL + +P L+  +  K +++ LNK DL
Sbjct: 14  IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADL 73

Query: 85  ANPNILNKWVRHFDSCKQDY-IAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
           A   +  KW ++F   +    I ++A SR   +K+ + +E   +E I R          +
Sbjct: 74  APKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKI 133

Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
            V VVG PNVGKS LIN +              K A     PG T+ I   K+     IY
Sbjct: 134 RVGVVGYPNVGKSTLINRLLGK-----------KVAKTSNRPGTTKGIQWIKLDDG--IY 180

Query: 197 VLDTPGVLVPSIPDIE-TGLKLALSGSIKDSVVGEERIAQYLL 238
           +LDTPG++ P   D E   LKLA  G IKD V+  + +A+ LL
Sbjct: 181 LLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLL 223

Length = 322

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 22/166 (13%)

Query: 43  LKISDLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNKKDLANPNILNKWVRHFDSC 100
           +K +D+V+EV D+R P  +    L+       K+ +I LNK DL    +L KW   F+S 
Sbjct: 9   IKEADVVLEVVDARDPELTRSRKLERMALELGKKLIIVLNKADLVPREVLEKWKEVFESE 68

Query: 101 KQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIAL 160
               + ++A  R   + L       +KE+      ++V VVG P VGKS++IN     AL
Sbjct: 69  GLPVVYVSARERLGTRILRR----TIKELAIDGKPVIVGVVGYPKVGKSSIIN-----AL 119

Query: 161 SRFPVQEKTKRATVGPLPGV---TQDIAGFKIAHRPSIYVLDTPGV 203
                      A+  P+PG    T+ I   +I  +  IY++DTPGV
Sbjct: 120 KG------RHSASTSPIPGSPGYTKGIQLVRIDSK--IYLIDTPGV 157

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 64  PGLQPQLSAKRRVIALNKKDL----ANPNILNKWVR----HFDSCKQDYIAINAHSRSSV 115
           PGL   + AK  ++  NK DL      PN L +WV+          +D I ++A     V
Sbjct: 52  PGLAELIGAKPVILVGNKIDLLPKDVKPNRLKQWVKKRLKIGGLKIKDVILVSAKKGWGV 111

Query: 116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVG 175
           ++L+E ++   K          V VVG  NVGKS LIN++ +    +   Q   +R TV 
Sbjct: 112 EELIEEIKKLAK------YRGDVYVVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVS 165

Query: 176 PLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
           P+PG T  +    +     +Y  DTPG+
Sbjct: 166 PIPGTTLGLIKIPLGEGKKLY--DTPGI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 73.6 bits (181), Expect = 7e-16
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 21/162 (12%)

Query: 47  DLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNKKDLANPNILNKWVRHFDSCKQDY 104
           D+V+EV D+R PLSS +P ++  ++   K+ ++ LNK DL    +L KWV       + Y
Sbjct: 1   DVVVEVVDARDPLSSRNPDIEVLINEKNKKLIMVLNKADLVPKEVLRKWVAEL---SELY 57

Query: 105 IAINAH-SRSSVQKLLELVELKLKEVISREPT--LLVMVVGVPNVGKSALINSIHQIALS 161
                  S ++ Q +L+L     K+ +  +    + V VVG+PNVGKS+ IN++      
Sbjct: 58  GTKTFFISATNGQGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINAL------ 111

Query: 162 RFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
                    +  VG +PG T+     K+     IY+ DTPG+
Sbjct: 112 -----LNKFKLKVGSIPGTTKLQQDVKLDKE--IYLYDTPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 40/184 (21%)

Query: 47  DLVIEVRDSRIPLSSAHPGLQPQLSA----KRRVIALNKKDLANPNILNKWVRH------ 96
           D+++EV D+R PL    P ++  +      K+ V+ LNK DL     + KW+++      
Sbjct: 1   DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNEFP 60

Query: 97  ---FDSCKQDYIAINAHSRSSVQKLLELVE----------LKLKEVISREP----TLLVM 139
              F +  Q      +     V+   +L+           LKL +  +R      ++ V 
Sbjct: 61  TVAFKASTQQQKKNLSRKSKKVKASDDLLSSSACLGADALLKLLKNYARNKGIKTSITVG 120

Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
           VVG PNVGKS++INS     L R      ++   VG  PGVT+ +    +     + +LD
Sbjct: 121 VVGYPNVGKSSVINS-----LKR------SRACNVGATPGVTKSMQEVHL--DKHVKLLD 167

Query: 200 TPGV 203
           +PGV
Sbjct: 168 SPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
           V +VG PNVGKS LIN++              K A V   PG T+D     +     I +
Sbjct: 2   VALVGRPNVGKSTLINALT-----------GAKVAIVSDYPGTTRDPILGVLGLGRQIIL 50

Query: 198 LDTPGVLVPSIPD 210
           +DTPG++  +   
Sbjct: 51  VDTPGLIEGASEG 63

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 35/171 (20%)

Query: 46  SDLVIEVRDSRIPLSSAHPGLQPQLSAKRR----VIALNKKDLANPNILNKWVRHFDSCK 101
           SD++I+V D+R P+ +    ++  L  ++     +  LNK DL    +  +WV+      
Sbjct: 9   SDVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRWVKVL---S 65

Query: 102 QDYIAINAHSRSSVQK------LLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSI 155
           ++Y  +  H+  S+        L+ L+  +  ++ S +  + V  +G PNVGKS++IN++
Sbjct: 66  KEYPTLAFHA--SITNPFGKGALINLLR-QFAKLHSDKKQISVGFIGYPNVGKSSVINTL 122

Query: 156 HQIALSRFPVQEKTKRATVGPLPGVT---QDIAGFKIAHRPSIYVLDTPGV 203
                         K   V P+PG T   Q I   K      IY++D PGV
Sbjct: 123 -----------RSKKVCKVAPIPGETKVWQYITLMK-----RIYLIDCPGV 157

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 40/165 (24%)

Query: 46  SDLVIEVRDSRIPLSSAHPGL----QPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCK 101
           SD+V+++ D+R PL    P L    +    +K  V+ LNK DL        W R+F    
Sbjct: 12  SDVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLVTEEQRKAWARYFKK-- 69

Query: 102 QDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALS 161
                           L E                 + +VG PNVGKS+LIN++      
Sbjct: 70  ------EGIVVLFFSALNEAT---------------IGLVGYPNVGKSSLINALV----- 103

Query: 162 RFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP 206
                  +K+ +V   PG T+      +   P I + D PG++ P
Sbjct: 104 ------GSKKVSVSSTPGKTKHFQTIFLE--PGITLCDCPGLVFP 140

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 27/151 (17%)

Query: 64  PGLQPQLSAKRRVIALNKKDL----ANPNILNKWVRHFDSCK------QDYIAINAHSRS 113
           P L+  +     ++  NK DL     N + + +W++     K       D I ++A   +
Sbjct: 82  PELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMK--KRAKELGLKPVDIILVSAKKGN 139

Query: 114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT 173
            + +LL+ ++ K +          V VVGV NVGKS+LIN + +               T
Sbjct: 140 GIDELLDKIK-KARNKKD------VYVVGVTNVGKSSLINKLLKQN------NGDKDVIT 186

Query: 174 VGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204
             P PG T D+   +I       + DTPG++
Sbjct: 187 TSPFPGTTLDL--IEIPLDDGHSLYDTPGII 215

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 13/67 (19%)

Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP--SIYV 197
           + G PNVGKS+L+N++                  V P+PG T+D    +    P   + +
Sbjct: 2   IFGRPNVGKSSLLNALL-----------GQNVGIVSPIPGTTRDPVRKEWELLPLGPVVL 50

Query: 198 LDTPGVL 204
           +DTPG+ 
Sbjct: 51  IDTPGLD 57

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 27/119 (22%)

Query: 64  PGLQPQLSAKRRVIALNKKDL----ANPNILNKWVRHFDSCKQ------DYIAINAHSRS 113
           PGL   +     ++  NK DL       N +  W+R     K+      D + I+A    
Sbjct: 88  PGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQ--EAKELGLRPVDVVLISAQKGH 145

Query: 114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ--------IALSRFP 164
            + +LLE +E K +E   R+    V VVGV NVGKS LIN I +        I  SRFP
Sbjct: 146 GIDELLEAIE-KYRE--GRD----VYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFP 197

Length = 365

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 76  VIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT 135
           VI LNK DL +   L + +  ++      +A++A +   + +L EL    LK   S    
Sbjct: 37  VIVLNKADLVDDEELEELLEIYEKLGYPVLAVSAKTGEGLDELREL----LKGKTS---- 88

Query: 136 LLVMVVGVPNVGKSALINSI 155
              ++VG   VGKS L+N++
Sbjct: 89  ---VLVGQSGVGKSTLLNAL 105

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI--AGFKIAHRPSIYVL 198
           VG PNVGKS L N +              + A V   PGVT+D      +   R  I ++
Sbjct: 3   VGRPNVGKSTLFNRL-----------TGRRDAIVSDTPGVTRDRKYGEAEWGGREFI-LI 50

Query: 199 DTPGV 203
           DT G+
Sbjct: 51  DTGGI 55

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 68  PQLSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLELVELKL 126
           P+L+ K R++ LNK DL +   L + ++   ++  +    I+A +   + +LL  +   L
Sbjct: 269 PELAEKPRIVVLNKIDLLDEEELEELLKELKEALGKPVFPISALTGEGLDELLYALAELL 328

Query: 127 K 127
           +
Sbjct: 329 E 329

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 42.4 bits (101), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 15/85 (17%)

Query: 103 DYIAINAHSRSSVQKLLELVELKLKEVISREPT----LLVMVVGVPNVGKSALINSIHQI 158
           + I I+A     +  LL+ +   L E    E      + + ++G PNVGKS L+N++   
Sbjct: 136 EPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNAL--- 192

Query: 159 ALSRFPVQEKTKRATVGPLPGVTQD 183
                 + E  +R  V  + G T+D
Sbjct: 193 ------LGE--ERVIVSDIAGTTRD 209

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 19/81 (23%)

Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD--IAGFKIAHRPS 194
           +V +VG PNVGKS L N +              + A V   PGVT+D      +   R  
Sbjct: 1   VVAIVGRPNVGKSTLFNRL-----------TGKRDAIVSDTPGVTRDRKYGDAEWGGREF 49

Query: 195 IYVLDTPGVLVPSIPDIETGL 215
           I ++DT G     I + + GL
Sbjct: 50  I-LIDTGG-----IEEDDDGL 64

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 12/66 (18%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD-IAGFKIAHRPSIY 196
           V ++G PNVGKS L+N +H             K +   P    T++ I+G        I 
Sbjct: 3   VAILGRPNVGKSTLLNQLH-----------GQKISITSPKAQTTRNRISGIHTTGASQII 51

Query: 197 VLDTPG 202
            +DTPG
Sbjct: 52  FIDTPG 57

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVL 198
           +VG PNVGK+ L N     AL+         R  VG  PGVT +   G        I ++
Sbjct: 2   LVGNPNVGKTTLFN-----ALTG-------ARQKVGNWPGVTVEKKEGEFKLGGKEIEIV 49

Query: 199 DTPGV--LVPSIPD 210
           D PG   L P   D
Sbjct: 50  DLPGTYSLTPYSED 63

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIY 196
           V +VG PNVGK+ L N     AL+            VG  PGVT +   G        I 
Sbjct: 6   VALVGNPNVGKTTLFN-----ALTG-------ANQKVGNWPGVTVEKKEGKLKYKGHEIE 53

Query: 197 VLDTPGVLVPSIPDIE 212
           ++D PG    +    +
Sbjct: 54  IVDLPGTYSLTAYSED 69

Length = 653

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 11/65 (16%)

Query: 119 LELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLP 178
           L+  +L   E     P  +V VVG PNVGKS L+N I    L R       + A V  +P
Sbjct: 22  LDDEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRI----LGR-------REAVVEDVP 70

Query: 179 GVTQD 183
           GVT+D
Sbjct: 71  GVTRD 75

Length = 472

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 24/76 (31%)

Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD-------IAGF 187
           T +V +VG PNVGKS L N      L+        + A V   PGVT+D         G 
Sbjct: 3   TPVVAIVGRPNVGKSTLFN-----RLTG------RRIAIVSDTPGVTRDRIYGDAEWLGR 51

Query: 188 KIAHRPSIYVLDTPGV 203
           +        ++DT G+
Sbjct: 52  EFI------LIDTGGL 61

Length = 444

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPS 194
           + + +VG PNVGK+ L N     AL+         R  VG  PGVT +   G        
Sbjct: 1   ITIALVGNPNVGKTTLFN-----ALTG-------ARQHVGNWPGVTVEKKEGTFKYKGYE 48

Query: 195 IYVLDTPGV 203
           I ++D PG 
Sbjct: 49  IEIVDLPGT 57

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 12/67 (17%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD-IAGFKIAHRPSIY 196
           V ++G PNVGKS L+N++              K + V P P  T++ I G        I 
Sbjct: 9   VAIIGRPNVGKSTLLNALV-----------GQKISIVSPKPQTTRNRIRGIVTTDNAQII 57

Query: 197 VLDTPGV 203
            +DTPG+
Sbjct: 58  FVDTPGI 64

Length = 298

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 11/53 (20%)

Query: 131 SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
             +   +V +VG PNVGKS L+N I    L R       + A V   PGVT+D
Sbjct: 271 GPKAVGVVAIVGRPNVGKSTLVNRI----LGR-------REAVVEDTPGVTRD 312

Length = 712

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 39.6 bits (94), Expect = 0.002
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 103 DYIAINAHSRSSVQKLLELVELKL---KEVISREPTLLVMVVGVPNVGKSALINSIHQIA 159
           +   I+A     +  LL+ +  +L   +E    +  + + ++G PNVGKS+LIN++    
Sbjct: 138 EPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINAL---- 193

Query: 160 LSRFPVQEKTKRATVGPLPGVTQD 183
                + E  +R  V  + G T+D
Sbjct: 194 -----LGE--ERVIVSDIAGTTRD 210

Length = 435

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQ 166
           I       + +L EL+    +  I RE   +V ++G PNVGKS+L+N     AL      
Sbjct: 190 IREKLEELIAELDELLATAKQGKILREGLKVV-IIGRPNVGKSSLLN-----ALLG---- 239

Query: 167 EKTKRATVGPLPGVTQDI--AGFKIAHRPSIYVLDTPG 202
               RA V  + G T+D+      +   P + ++DT G
Sbjct: 240 --RDRAIVTDIAGTTRDVIEEDINLNGIP-VRLVDTAG 274

Length = 454

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 38.2 bits (90), Expect = 0.002
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 11/44 (25%)

Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
           ++G PNVGKS+L+N++         + E  +R  V  + G T+D
Sbjct: 7   IIGRPNVGKSSLLNAL---------LGE--ERVIVSDIAGTTRD 39

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 13/63 (20%)

Query: 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS-IYVLDT 200
           G PNVGKS L N     AL+           TVG  PGVT +    K+  +   I ++D 
Sbjct: 1   GNPNVGKSTLFN-----ALTG-------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDL 48

Query: 201 PGV 203
           PG+
Sbjct: 49  PGI 51

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 16/86 (18%)

Query: 103 DYIAINAHSRSSVQKLLELVELKLKEVISREP-----TLLVMVVGVPNVGKSALINSIHQ 157
           + + I+A     +  LL+ V   L      E       + + ++G PNVGKS+LIN+I  
Sbjct: 141 EPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILG 200

Query: 158 IALSRFPVQEKTKRATVGPLPGVTQD 183
                   +E   R  V  + G T+D
Sbjct: 201 --------EE---RVIVSDIAGTTRD 215

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	100.0
PRK09563	287	rbgA GTPase YlqF; Reviewed	100.0
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	100.0
COG1161	322	Predicted GTPases [General function prediction onl	100.0
KOG2484	435	consensus GTPase [General function prediction only	100.0
KOG2423	572	consensus Nucleolar GTPase [General function predi	100.0
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	100.0
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	100.0
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.96
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.95
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.94
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.93
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.92
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.92
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.92
PRK12289	352	GTPase RsgA; Reviewed	99.92
PRK12288	347	GTPase RsgA; Reviewed	99.91
COG1160	444	Predicted GTPases [General function prediction onl	99.9
PRK13796	365	GTPase YqeH; Provisional	99.9
PRK00098	298	GTPase RsgA; Reviewed	99.89
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.89
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.88
COG1162	301	Predicted GTPases [General function prediction onl	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.8
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
PRK00093	435	GTP-binding protein Der; Reviewed	99.78
PRK01889	356	GTPase RsgA; Reviewed	99.77
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.76
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.69
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.43
COG1159	298	Era GTPase [General function prediction only]	99.43
COG0486	454	ThdF Predicted GTPase [General function prediction	99.42
COG1084	346	Predicted GTPase [General function prediction only	99.38
COG0218	200	Predicted GTPase [General function prediction only	99.27
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.24
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.21
COG1160	444	Predicted GTPases [General function prediction onl	99.2
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.09
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.05
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.0
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.99
PRK12298	390	obgE GTPase CgtA; Reviewed	98.98
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.92
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.92
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.92
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.9
PTZ00258	390	GTP-binding protein; Provisional	98.88
PRK00089	292	era GTPase Era; Reviewed	98.88
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.87
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.87
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.87
PRK09601	364	GTP-binding protein YchF; Reviewed	98.86
PRK15494	339	era GTPase Era; Provisional	98.84
PRK12299	335	obgE GTPase CgtA; Reviewed	98.84
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.83
COG1159	298	Era GTPase [General function prediction only]	98.83
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.83
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.81
PRK04213	201	GTP-binding protein; Provisional	98.78
COG2262	411	HflX GTPases [General function prediction only]	98.78
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.78
COG1163	365	DRG Predicted GTPase [General function prediction	98.77
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.75
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.75
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.75
PRK12297	424	obgE GTPase CgtA; Reviewed	98.75
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.75
PRK11058	426	GTPase HflX; Provisional	98.74
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.73
PRK12296	500	obgE GTPase CgtA; Reviewed	98.72
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.71
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.7
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.7
COG3596	296	Predicted GTPase [General function prediction only	98.7
COG0486	454	ThdF Predicted GTPase [General function prediction	98.69
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.69
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.69
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.68
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.68
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.66
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.66
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.65
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.65
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.64
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.63
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.63
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.62
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.62
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.62
KOG1249	572	consensus Predicted GTPases [General function pred	98.62
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.61
PRK03003	472	GTP-binding protein Der; Reviewed	98.6
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.6
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.59
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.59
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.59
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.56
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.55
PRK09866	741	hypothetical protein; Provisional	98.54
PRK09602	396	translation-associated GTPase; Reviewed	98.54
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.53
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.52
cd00881	189	GTP_translation_factor GTP translation factor fami	98.52
PRK15494	339	era GTPase Era; Provisional	98.51
PRK00089	292	era GTPase Era; Reviewed	98.51
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.49
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.49
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.48
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.48
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.46
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.46
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.46
PRK12296	500	obgE GTPase CgtA; Reviewed	98.45
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.45
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.45
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.45
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.45
COG0536	369	Obg Predicted GTPase [General function prediction	98.44
PRK11058	426	GTPase HflX; Provisional	98.41
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.41
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.39
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.39
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.39
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.38
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.38
PRK12299	335	obgE GTPase CgtA; Reviewed	98.38
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.38
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.37
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.35
PRK00093	435	GTP-binding protein Der; Reviewed	98.33
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.33
PRK12736	394	elongation factor Tu; Reviewed	98.33
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.33
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.31
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.31
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.31
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.3
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.3
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.29
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.29
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.29
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.29
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.27
PRK05433	600	GTP-binding protein LepA; Provisional	98.27
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.27
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.27
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.26
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.25
COG2262	411	HflX GTPases [General function prediction only]	98.25
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.25
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.24
CHL00071	409	tufA elongation factor Tu	98.24
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.24
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.23
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.23
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.23
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.23
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.23
PLN03118	211	Rab family protein; Provisional	98.23
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.23
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.22
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.22
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.22
PRK12298	390	obgE GTPase CgtA; Reviewed	98.22
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.22
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.21
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.2
PLN00223	181	ADP-ribosylation factor; Provisional	98.2
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.2
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.19
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.19
PRK12735	396	elongation factor Tu; Reviewed	98.18
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.17
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.17
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.17
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.17
PRK13768	253	GTPase; Provisional	98.17
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.17
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.17
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.16
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.16
PLN03127	447	Elongation factor Tu; Provisional	98.15
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.15
PRK12297	424	obgE GTPase CgtA; Reviewed	98.15
PRK00049	396	elongation factor Tu; Reviewed	98.15
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.14
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.14
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.13
PRK12317	425	elongation factor 1-alpha; Reviewed	98.13
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.13
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.13
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.13
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.13
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.12
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.12
cd00881	189	GTP_translation_factor GTP translation factor fami	98.12
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.12
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.12
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.12
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.12
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.11
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.11
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.1
KOG2486	320	consensus Predicted GTPase [General function predi	98.1
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.1
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.1
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.1
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.1
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.1
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.09
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.09
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.09
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.09
PTZ00099	176	rab6; Provisional	98.09
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.09
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.09
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.08
PLN00043	447	elongation factor 1-alpha; Provisional	98.08
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.08
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.08
PRK12317	425	elongation factor 1-alpha; Reviewed	98.07
KOG0460	449	consensus Mitochondrial translation elongation fac	98.07
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.07
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.07
PTZ00133	182	ADP-ribosylation factor; Provisional	98.06
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.06
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.05
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.05
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.05
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.05
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.04
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.04
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.04
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.04
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.03
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.03
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.03
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.03
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.03
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.02
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.02
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.02
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.02
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.02
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.02
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.02
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.02
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.02
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.02
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.01
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.01
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.01
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.01
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.01
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.0
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.99
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.99
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.99
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.99
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	97.99
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.99
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	97.99
PRK04213	201	GTP-binding protein; Provisional	97.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.98
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	97.98
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.98
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.98
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.98
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.98
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	97.98
PTZ00141	446	elongation factor 1- alpha; Provisional	97.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.96
PTZ00369	189	Ras-like protein; Provisional	97.95
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	97.95
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.95
PRK10218	607	GTP-binding protein; Provisional	97.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	97.95
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	97.94
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.94
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	97.94
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.94
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.93
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	97.93
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.93
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.93
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.93
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.93
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.92
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.92
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.92
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	97.91
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.91
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.9
CHL00071	409	tufA elongation factor Tu	97.89
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.89
PLN03126	478	Elongation factor Tu; Provisional	97.89
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	97.89
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	97.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.89
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.88
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.88
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	97.88
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.88
COG2229	187	Predicted GTPase [General function prediction only	97.88
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	97.87
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	97.87
PTZ00133	182	ADP-ribosylation factor; Provisional	97.87
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	97.87
PLN03118	211	Rab family protein; Provisional	97.87
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.87
CHL00189	742	infB translation initiation factor 2; Provisional	97.86
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.86
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.86
COG0218	200	Predicted GTPase [General function prediction only	97.86
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.85
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.84
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.84
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.84
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.84
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.84
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.84
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.84
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.83
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.83
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	97.82
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.82
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.81
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.81
PRK05306	787	infB translation initiation factor IF-2; Validated	97.81
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.81
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.81
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	97.81
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.8
PLN03108	210	Rab family protein; Provisional	97.8
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.79
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.79
KOG1145	683	consensus Mitochondrial translation initiation fac	97.78
PLN03110	216	Rab GTPase; Provisional	97.77
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.76
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.75
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.75
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.75
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.75
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.75
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.74
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.74
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.73
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.73
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.73
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.73
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.72
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.72
PLN03108	210	Rab family protein; Provisional	97.72
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.72
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.7
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.7
COG0536	369	Obg Predicted GTPase [General function prediction	97.7
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.7
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.7
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.69
PRK12735	396	elongation factor Tu; Reviewed	97.69
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.69
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	97.69
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	97.68
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.68
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.68
PTZ00369	189	Ras-like protein; Provisional	97.68
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.67
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.67
CHL00189	742	infB translation initiation factor 2; Provisional	97.67
PRK05306	787	infB translation initiation factor IF-2; Validated	97.66
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.66
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.64
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.64
PLN03127	447	Elongation factor Tu; Provisional	97.64
PRK14845	1049	translation initiation factor IF-2; Provisional	97.62
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.61
PLN00223	181	ADP-ribosylation factor; Provisional	97.61
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.61
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.61
PRK00049	396	elongation factor Tu; Reviewed	97.61
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.6
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.59
PRK04004	586	translation initiation factor IF-2; Validated	97.59
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.58
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.58
PLN03110	216	Rab GTPase; Provisional	97.57
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.56
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	97.56
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.56
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.56
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.55
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.55
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.55
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.55
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.55
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.54
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.53
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.53
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.52
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.51
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.51
KOG0410	410	consensus Predicted GTP binding protein [General f	97.51
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.5
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.5
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.49
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.49
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.48
PRK12736	394	elongation factor Tu; Reviewed	97.47
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.47
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.46
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.45
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.45
PRK04004	586	translation initiation factor IF-2; Validated	97.44
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.44
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.44
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.43
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.42
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.42
COG1100	219	GTPase SAR1 and related small G proteins [General	97.41
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.39
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.38
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.38
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.38
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.36
PRK12739	691	elongation factor G; Reviewed	97.36
PRK00007	693	elongation factor G; Reviewed	97.35
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.35
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.34
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.33
PRK12739	691	elongation factor G; Reviewed	97.33
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.32
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.31
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.31
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.3
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.3
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.29
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.29
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.26
PLN03126	478	Elongation factor Tu; Provisional	97.24
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.23
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.22
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	97.21
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.21
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.2
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.2
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.18
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.18
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.15
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.14
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	97.13
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.12
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.1
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.09
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.09
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.08
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.08
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.06
PRK12740	668	elongation factor G; Reviewed	97.06
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.06
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	97.05
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.05
PRK09866	741	hypothetical protein; Provisional	97.04
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.03
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.01
PRK00007	693	elongation factor G; Reviewed	97.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	96.97
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	96.94
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	96.91
PRK00741	526	prfC peptide chain release factor 3; Provisional	96.88
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	96.87
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	96.86
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	96.83
PRK13351	687	elongation factor G; Reviewed	96.81
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	96.8
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	96.78
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	96.76
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	96.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	96.74
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	96.73
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	96.73
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	96.68
KOG0410	410	consensus Predicted GTP binding protein [General f	96.68
TIGR00503	527	prfC peptide chain release factor 3. This translat	96.68
COG1084	346	Predicted GTPase [General function prediction only	96.67
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	96.66
PLN00023	334	GTP-binding protein; Provisional	96.65
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.65
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.65
PRK10218	607	GTP-binding protein; Provisional	96.61
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	96.61
cd04105	203	SR_beta Signal recognition particle receptor, beta	96.59
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	96.59

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=100.00  E-value=3.2e-55  Score=408.22  Aligned_cols=313  Identities=42%  Similarity=0.633  Sum_probs=257.2

Q ss_pred             CchHHHHHhcccccceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEE
Q 017187            1 MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALN   80 (375)
Q Consensus         1 ~~~~~~~~~~~~~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlN   80 (375)
                      |..+|.+++++| +...+.....+++||||||++|++++++.++.+|+||||+|||+|++++|+.+.++...+|.|+|+|
T Consensus         3 ~~~~~s~~~~~~-~~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlN   81 (335)
T KOG2485|consen    3 TRKTWSIAREAG-DAVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLN   81 (335)
T ss_pred             hhHHHHHHHHhh-hcccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEe
Confidence            457899999996 5555555567799999999999999999999999999999999999999999999988999999999


Q ss_pred             cCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccC--HHHHHHHHHHHHhhh----hccCCceEEEEEcCCCCChHHHHH
Q 017187           81 KKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSS--VQKLLELVELKLKEV----ISREPTLLVMVVGVPNVGKSALIN  153 (375)
Q Consensus        81 K~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~g--vk~Ll~~L~~~l~~~----~~~~~~~~v~vvG~pnvGKSsliN  153 (375)
                      |+||+++...+..+++++..+. .++..+|....+  +..++..+.....++    +......++||+|.||||||||||
T Consensus        82 K~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLIN  161 (335)
T KOG2485|consen   82 KMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLIN  161 (335)
T ss_pred             cccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHH
Confidence            9999998777888888874443 445556554332  555555444333332    335678999999999999999999


Q ss_pred             HHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHH
Q 017187          154 SIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEER  232 (375)
Q Consensus       154 ~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~  232 (375)
                      +++..      +.++.+.++||+.||+|+.++. +++...+.+|++||||+..|++.+.|.+++||+||+++++.++++.
T Consensus       162 a~r~~------~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~  235 (335)
T KOG2485|consen  162 ALRNV------HLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEET  235 (335)
T ss_pred             HHHHH------HhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHH
Confidence            99872      1234588999999999999986 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCchhhhhhcccccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCC
Q 017187          233 IAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGN  312 (375)
Q Consensus       233 ~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (375)
                      +|||+++++|.+..+.++..+...                        +.|+|+..+.+  ...++|+.+.++++.|+|+
T Consensus       236 ~adylL~~lN~~~~~~y~~~l~~~------------------------~~~~dd~~~nl--~~l~v~~~~~~k~s~fdg~  289 (335)
T KOG2485|consen  236 IADYLLYLLNSHSDFSYVKDLKPG------------------------STPADDIEQNL--AVLAVRRTKNEKVSAFDGN  289 (335)
T ss_pred             HHHHHHHHHhccCcchhHHHhccC------------------------CCccccHHHHH--HHHHHHHHhcceeeEecCC
Confidence            999999999999999877544332                        12666665555  4789999999999999988


Q ss_pred             --cCChhhHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecccCCC
Q 017187          313 --VEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPD  370 (375)
Q Consensus       313 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~~~  370 (375)
                        ++..                   .|     .+..+|+.+++.||+|.+|.+.++..+.
T Consensus       290 ~~~ei~-------------------~~-----~~ln~~e~~l~~~rsg~l~~~~ln~~~~  325 (335)
T KOG2485|consen  290 NKLEIE-------------------QP-----NLLNLARFFLATFRSGLLGPEELNYVIL  325 (335)
T ss_pred             ceeEEe-------------------ch-----HHHHHHHHHHHHHHhccccceeecchhh
Confidence              4431                   11     2678999999999999999887776543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=100.00  E-value=2e-53  Score=407.26  Aligned_cols=276  Identities=38%  Similarity=0.564  Sum_probs=234.0

Q ss_pred             cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCc
Q 017187           24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQD  103 (375)
Q Consensus        24 ~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~  103 (375)
                      +++||||||+++++++++.++++|+||+|+|+|.|.+++++.+.+...++|+++|+||+||+++...+.|.+++++.+..
T Consensus         3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~   82 (287)
T PRK09563          3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK   82 (287)
T ss_pred             cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence            38999999999999999999999999999999999999998888876689999999999998776677899888655677


Q ss_pred             EEEEecCCccCHHHHHHHHHHHHhhhhc-------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCC
Q 017187          104 YIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP  176 (375)
Q Consensus       104 vi~iSa~~~~gvk~Ll~~L~~~l~~~~~-------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~  176 (375)
                      ++++|++++.|+++|++.+...+++...       ....++++++|.||||||||||+|.+           .+.+.+++
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~-----------~~~~~~~~  151 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG-----------KKIAKTGN  151 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhc-----------CCccccCC
Confidence            8999999999999999998887765311       24568999999999999999999997           46678999


Q ss_pred             CCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcc
Q 017187          177 LPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR  256 (375)
Q Consensus       177 ~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~  256 (375)
                      .||+|++.+.+.+.  .+++++||||+..|...+.+.+.++|++|+|+++.++.+++++|++++++.+.+.....     
T Consensus       152 ~~g~T~~~~~~~~~--~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~-----  224 (287)
T PRK09563        152 RPGVTKAQQWIKLG--KGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKE-----  224 (287)
T ss_pred             CCCeEEEEEEEEeC--CcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHHH-----
Confidence            99999999987665  35999999999999999999999999999999999999999999999998754322111     


Q ss_pred             cccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCC
Q 017187          257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKI  336 (375)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  336 (375)
                      .+.+                      |                           ....+..+|++.+++++|+++++| .
T Consensus       225 ~y~~----------------------~---------------------------~~~~~~~~~l~~~a~~~g~~~k~g-~  254 (287)
T PRK09563        225 RYKL----------------------D---------------------------ELPEDILELLEAIARKRGALRKGG-E  254 (287)
T ss_pred             HhCC----------------------C---------------------------CCCCCHHHHHHHHHHHhCccccCC-c
Confidence            1111                      0                           001256789999999999999876 4


Q ss_pred             CCcchHHHHHHHHHHHHHhhCCCCCCeecccCCCCCC
Q 017187          337 PHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDANS  373 (375)
Q Consensus       337 ~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~~~~~~  373 (375)
                      ||     +++||+.||++||+|+||+|+||.+ +.+|
T Consensus       255 ~D-----~~~aa~~~l~d~~~Gklg~~~ld~~-~~~~  285 (287)
T PRK09563        255 ID-----YERASELLLNEFRNGKLGKITLETP-EMAE  285 (287)
T ss_pred             cC-----HHHHHHHHHHHHHcCCCCcEEccCC-cccc
Confidence            75     8999999999999999999999975 4443

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=100.00  E-value=1.2e-52  Score=399.72  Aligned_cols=269  Identities=39%  Similarity=0.565  Sum_probs=230.0

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcE
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDY  104 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~v  104 (375)
                      ++||||||+++++++++.++++|+||+|+|||.|.+++++.+.+...++|+|+|+||+||+++.....|.+++++.+..+
T Consensus         1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v   80 (276)
T TIGR03596         1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA   80 (276)
T ss_pred             CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence            58999999999999999999999999999999999999988888777899999999999988766778888886556678


Q ss_pred             EEEecCCccCHHHHHHHHHHHHhhhhc-------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187          105 IAINAHSRSSVQKLLELVELKLKEVIS-------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL  177 (375)
Q Consensus       105 i~iSa~~~~gvk~Ll~~L~~~l~~~~~-------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~  177 (375)
                      +++|++++.|+++|++.+.+.+++...       ....++++++|.||||||||||+|.+           .+.+.+++.
T Consensus        81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~-----------~~~~~~~~~  149 (276)
T TIGR03596        81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAG-----------KKVAKVGNR  149 (276)
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhC-----------CCccccCCC
Confidence            999999999999999999887765311       13568999999999999999999997           456788999


Q ss_pred             CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccc
Q 017187          178 PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT  257 (375)
Q Consensus       178 pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~  257 (375)
                      ||+|+..+.+.+..  .++++||||+..|...+.+.+.++|++|+++++.++.+++++|++++++.+.+..     ....
T Consensus       150 ~g~T~~~~~~~~~~--~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~-----l~~~  222 (276)
T TIGR03596       150 PGVTKGQQWIKLSD--GLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPER-----LKER  222 (276)
T ss_pred             CCeecceEEEEeCC--CEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHH-----HHHH
Confidence            99999999877753  5999999999999999999999999999999999999999999999998754311     1111


Q ss_pred             ccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCC
Q 017187          258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIP  337 (375)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  337 (375)
                      +.+                      |                           ....+..+|++.+++++|+++++| .|
T Consensus       223 y~i----------------------~---------------------------~~~~~~~~~l~~~a~~~g~~~k~g-~~  252 (276)
T TIGR03596       223 YKL----------------------D---------------------------ELPEDIVELLEAIAKKRGCLLKGG-EL  252 (276)
T ss_pred             hCc----------------------C---------------------------CCCCCHHHHHHHHHHHhCccccCC-cc
Confidence            121                      1                           111256789999999999999966 47


Q ss_pred             CcchHHHHHHHHHHHHHhhCCCCCCeecc
Q 017187          338 HKASEARLMVSKKFLTLFRTGKLGPFILD  366 (375)
Q Consensus       338 ~~~~~~~~~aa~~~l~~~r~G~lg~~~ld  366 (375)
                      |     +++||+.||++||+|+||+||||
T Consensus       253 D-----~~~aa~~~l~d~~~Gklg~~~ld  276 (276)
T TIGR03596       253 D-----LDRAAEILLNDFRKGKLGRITLE  276 (276)
T ss_pred             C-----HHHHHHHHHHHHHcCCCCceecC
Confidence            6     89999999999999999999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1161 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=5.3e-44  Score=346.50  Aligned_cols=278  Identities=35%  Similarity=0.481  Sum_probs=227.0

Q ss_pred             CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-C
Q 017187           23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSC-K  101 (375)
Q Consensus        23 ~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-g  101 (375)
                      ..++||||||.++.+++.+.++.+|+|++|+|||+|.+++++.+.++..+++.++|+||+||++...+++|.+++.+. +
T Consensus        12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~   91 (322)
T COG1161          12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG   91 (322)
T ss_pred             ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence            568999999999999999999999999999999999999999999998888999999999999999999999999765 6


Q ss_pred             CcEEEEecCCccCHHHHHHHHHHHH----hhh---hccCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccccc
Q 017187          102 QDYIAINAHSRSSVQKLLELVELKL----KEV---ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATV  174 (375)
Q Consensus       102 ~~vi~iSa~~~~gvk~Ll~~L~~~l----~~~---~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v  174 (375)
                      ..+++++++++.+...+...+....    ...   .......+++|||+||||||||||+|.+           .+.++|
T Consensus        92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~-----------k~~~~~  160 (322)
T COG1161          92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLG-----------KKVAKT  160 (322)
T ss_pred             CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhc-----------ccceee
Confidence            6788999999888887775444332    211   2234568999999999999999999998           466999


Q ss_pred             CCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC-hhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhh
Q 017187          175 GPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD-IETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL  253 (375)
Q Consensus       175 ~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~-~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~  253 (375)
                      |+.||+|++.+++++...  ++|+|||||.+|...+ ...+.+++.++++++...+...++.+++..+..  .+.+.+.+
T Consensus       161 s~~PG~Tk~~q~i~~~~~--i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~--~~~~~~~~  236 (322)
T COG1161         161 SNRPGTTKGIQWIKLDDG--IYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLLI--DEHYGEKL  236 (322)
T ss_pred             CCCCceecceEEEEcCCC--eEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhhhh--hhhhhHhh
Confidence            999999999999888755  9999999999999888 888899999999999999999888888766531  11111111


Q ss_pred             hcccccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHH-HHHH
Q 017187          254 NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFE-VLQR  332 (375)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  332 (375)
                      ....+..                     .|                           ..-.++.+++++++.++| .+++
T Consensus       237 ~~~~y~~---------------------~~---------------------------~~~~~~~~~l~~~a~~rg~~l~~  268 (322)
T COG1161         237 NITRYES---------------------NP---------------------------IHRTDPEEFLELIAKKRGWLLLK  268 (322)
T ss_pred             CCccccc---------------------cc---------------------------ccccCHHHHHHHHHHHhhhhhcC
Confidence            1100110                     00                           012357789999999999 6666


Q ss_pred             hhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecccCC
Q 017187          333 ALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVP  369 (375)
Q Consensus       333 ~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~~  369 (375)
                      +| .+|     +.+||..+++||+.|+||+|+++..+
T Consensus       269 ~g-~~d-----~~~~~~~~~~d~~~gklg~~~~~~~~  299 (322)
T COG1161         269 GG-EPD-----LERAAETILKDIRNGKLGWFSLEEPE  299 (322)
T ss_pred             CC-Ccc-----HHHHHHHHHHHHHhCCcceeecCCcc
Confidence            55 454     89999999999999999999999753

>KOG2484 consensus GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-39  Score=310.92  Aligned_cols=263  Identities=24%  Similarity=0.389  Sum_probs=204.8

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhC
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSC  100 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~  100 (375)
                      ..|.++|-....+.+++.++.+|+||+|+|||+|++++++..++..    ++|..|+|+||+||+|.+.+++|+.||+..
T Consensus       126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~  205 (435)
T KOG2484|consen  126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE  205 (435)
T ss_pred             hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence            5789999888999999999999999999999999999999998883    559999999999999999999999999866


Q ss_pred             CCcEEEEecCCcc-------------CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccc
Q 017187          101 KQDYIAINAHSRS-------------SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQE  167 (375)
Q Consensus       101 g~~vi~iSa~~~~-------------gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~  167 (375)
                      +..+.+.++....             |.+.++..+..+... ..-...++++|+|+|||||||+||+|..          
T Consensus       206 ~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~-~~lk~sIrvGViG~PNVGKSSvINsL~~----------  274 (435)
T KOG2484|consen  206 GPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRK-GELKTSIRVGIIGYPNVGKSSVINSLKR----------  274 (435)
T ss_pred             CCcceeecccccccccccccccchhhhHHHHHHHhcCcccc-cccCcceEeeeecCCCCChhHHHHHHHH----------
Confidence            6555554432211             333333333332221 1225679999999999999999999997          


Q ss_pred             cccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhccccc-ccCHHHHHHHHHHHHhcCCC
Q 017187          168 KTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDS-VVGEERIAQYLLAVLNTRGT  246 (375)
Q Consensus       168 k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~-~~~~~~~a~~ll~~l~~~~~  246 (375)
                       .+...||+.||+|+..++..++.  ++.|+|+||+..+...+.+   .++|..++..+ ..++...+.+++..++...-
T Consensus       275 -~k~C~vg~~pGvT~smqeV~Ldk--~i~llDsPgiv~~~~~~~~---~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e~~  348 (435)
T KOG2484|consen  275 -RKACNVGNVPGVTRSMQEVKLDK--KIRLLDSPGIVPPSIDEKD---ALALRNCIPIGKVADPVTPVSCILKRCSKESR  348 (435)
T ss_pred             -hccccCCCCccchhhhhheeccC--CceeccCCceeecCCCccc---hhhhhcccccccccCccchHHHHHHHhhHHHH
Confidence             57789999999999999877764  5999999999998777654   67888888876 44455556666655544111


Q ss_pred             CchhhhhhcccccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHH
Q 017187          247 PLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQ  326 (375)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (375)
                      ...|                                                      .++    .+....+|+..++++
T Consensus       349 ~~~Y------------------------------------------------------~~~----~~~~~~~Fl~~~ar~  370 (435)
T KOG2484|consen  349 SVLY------------------------------------------------------NIP----SIRATDDFLEKFARR  370 (435)
T ss_pred             HHHh------------------------------------------------------cCC----CcchHHHHHHHHHHH
Confidence            1111                                                      111    223566899999999


Q ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecccC
Q 017187          327 FEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDV  368 (375)
Q Consensus       327 ~~~l~~~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~  368 (375)
                      +|.+.+|| +||     .+.||..+|+|||+||++|||+++.
T Consensus       371 ~G~~~kGG-~pd-----~~~AA~~vl~Dw~~Gki~y~~~pp~  406 (435)
T KOG2484|consen  371 RGLLLKGG-IPD-----VNAAAFAVLNDWRTGKIGYYTLPPT  406 (435)
T ss_pred             HhhhhcCC-CCc-----HHHHHHHHHHhhccCceeeeeCCCh
Confidence            99999976 686     8999999999999999999999853

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=272.00  Aligned_cols=256  Identities=27%  Similarity=0.379  Sum_probs=198.1

Q ss_pred             hhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEE
Q 017187           30 GHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYI  105 (375)
Q Consensus        30 gHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi  105 (375)
                      |.-.+.+..+..++..+|+||.|+|||+|+.+++..+++++    ..|..|+|+|||||++-.....|+..+. ..++++
T Consensus       198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lS-keyPTi  276 (572)
T KOG2423|consen  198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLS-KEYPTI  276 (572)
T ss_pred             cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHh-hhCcce
Confidence            55556777888999999999999999999999999999883    4577899999999999999999999984 445555


Q ss_pred             EE--ecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeee
Q 017187          106 AI--NAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD  183 (375)
Q Consensus       106 ~i--Sa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~  183 (375)
                      .+  |-.+..|--.|++.+++.... ......+.|.+||+|||||||+||+|+.           ++++.|.++||.|+-
T Consensus       277 AfHAsi~nsfGKgalI~llRQf~kL-h~dkkqISVGfiGYPNvGKSSiINTLR~-----------KkVCkvAPIpGETKV  344 (572)
T KOG2423|consen  277 AFHASINNSFGKGALIQLLRQFAKL-HSDKKQISVGFIGYPNVGKSSIINTLRK-----------KKVCKVAPIPGETKV  344 (572)
T ss_pred             eeehhhcCccchhHHHHHHHHHHhh-ccCccceeeeeecCCCCchHHHHHHHhh-----------cccccccCCCCcchH
Confidence            44  444556777888877765443 4456789999999999999999999997           688999999999999


Q ss_pred             eEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccC-HHHHHHHHHHHHhcCCCCchhhhhhcccccccc
Q 017187          184 IAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG-EERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQS  262 (375)
Q Consensus       184 ~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~-~~~~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~  262 (375)
                      +|-+.+.  ..|+|||+||+..|.-...   -...+.|.++...+. +++   |+-.+|....+     .+....|+|  
T Consensus       345 WQYItLm--krIfLIDcPGvVyps~dse---t~ivLkGvVRVenv~~pe~---yi~~vl~R~k~-----ehl~rtYkI--  409 (572)
T KOG2423|consen  345 WQYITLM--KRIFLIDCPGVVYPSSDSE---TDIVLKGVVRVENVKNPED---YIDGVLERCKP-----EHLSRTYKI--  409 (572)
T ss_pred             HHHHHHH--hceeEecCCCccCCCCCch---HHHHhhceeeeeecCCHHH---HHHHHHHhhhH-----HHHHhhhCC--
Confidence            8854444  4599999999999876443   356788888866554 443   43333332111     011111222  


Q ss_pred             cccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCCCcchH
Q 017187          263 ETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASE  342 (375)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  342 (375)
                                                                      ....|..+|++.+|.+.|.|.|||. ||    
T Consensus       410 ------------------------------------------------~~w~d~~dfle~La~k~GkLlKGGE-Pd----  436 (572)
T KOG2423|consen  410 ------------------------------------------------SGWNDSTDFLEKLAIKQGKLLKGGE-PD----  436 (572)
T ss_pred             ------------------------------------------------CccccHHHHHHHHHHHhCccccCCC-Cc----
Confidence                                                            1456788999999999999999875 76    


Q ss_pred             HHHHHHHHHHHHhhCCCCCCeeccc
Q 017187          343 ARLMVSKKFLTLFRTGKLGPFILDD  367 (375)
Q Consensus       343 ~~~~aa~~~l~~~r~G~lg~~~ld~  367 (375)
                       ..-+|+++||||..||+.+|..++
T Consensus       437 -~~~vsKmvLnDwqRGkiP~FVpPp  460 (572)
T KOG2423|consen  437 -LVVVSKMVLNDWQRGKIPFFVPPP  460 (572)
T ss_pred             -hhHHHHHHhhHhhcCCCceecCCC
Confidence             789999999999999999998753

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=100.00  E-value=3.5e-32  Score=267.50  Aligned_cols=266  Identities=23%  Similarity=0.335  Sum_probs=187.6

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCc
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCKQD  103 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~  103 (375)
                      |... -+.+|++|++++.+|+||.|||||.|+..+++.|+++.    ..|..++++||+||++++....|.+||.+.+++
T Consensus       158 FErN-LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~  236 (562)
T KOG1424|consen  158 FERN-LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIP  236 (562)
T ss_pred             hhhC-HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCce
Confidence            4433 57899999999999999999999999999999999982    347789999999999999999999999888899


Q ss_pred             EEEEecCCc----------------cCHHHHHH---------HHHHH---------Hhhh-----------h-ccCCceE
Q 017187          104 YIAINAHSR----------------SSVQKLLE---------LVELK---------LKEV-----------I-SREPTLL  137 (375)
Q Consensus       104 vi~iSa~~~----------------~gvk~Ll~---------~L~~~---------l~~~-----------~-~~~~~~~  137 (375)
                      ++++||...                .++.....         .+.+.         +...           . .....++
T Consensus       237 ~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vt  316 (562)
T KOG1424|consen  237 VVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVT  316 (562)
T ss_pred             EEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeE
Confidence            999998651                11111111         00000         0000           0 0122489


Q ss_pred             EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHH
Q 017187          138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKL  217 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~l  217 (375)
                      |++||+|||||||+||+|.+           .+++.|+.+||.|+++|++.+..  .+.|+||||+.+|++.....  .+
T Consensus       317 VG~VGYPNVGKSSTINaLvG-----------~KkVsVS~TPGkTKHFQTi~ls~--~v~LCDCPGLVfPSf~~~r~--em  381 (562)
T KOG1424|consen  317 VGFVGYPNVGKSSTINALVG-----------RKKVSVSSTPGKTKHFQTIFLSP--SVCLCDCPGLVFPSFSPTRA--EM  381 (562)
T ss_pred             EEeecCCCCchhHHHHHHhc-----------CceeeeecCCCCcceeEEEEcCC--CceecCCCCccccCCCchHH--HH
Confidence            99999999999999999998           58899999999999999977764  59999999999999876322  23


Q ss_pred             HHhhcccccccCHHHHHHHHH--HHHhcCCCCchhhhhhcccccccccccccccccccccCCCCCCCCCCchhhHHHHHH
Q 017187          218 ALSGSIKDSVVGEERIAQYLL--AVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLV  295 (375)
Q Consensus       218 al~~~i~~~~~~~~~~a~~ll--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  295 (375)
                      .+.|.++     .+++.++.-  .++..+.+......+-..                     ..+.+|.           
T Consensus       382 vl~GiLP-----IDQmrd~~~~~~llaerIP~~~Le~~Y~~---------------------k~~e~~~-----------  424 (562)
T KOG1424|consen  382 VLNGILP-----IDQLRDHYGAVGLLAERIPRHVLERLYGH---------------------KPREDPE-----------  424 (562)
T ss_pred             HHhcCcc-----HHHhhcccchHHHHHHhcCHHHHHHHhCC---------------------CcccccC-----------
Confidence            3444433     444443321  112211111111000000                     0011121           


Q ss_pred             HHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecc
Q 017187          296 TGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD  366 (375)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld  366 (375)
                                    ++..+...+++.+.+..+|++...+. ||     .-|||+.+|+||-+|||-++.-+
T Consensus       425 --------------~~~pp~A~ell~a~a~~RGfmts~~~-~D-----~~RAAr~ILKDyv~GKL~~~~~P  475 (562)
T KOG1424|consen  425 --------------DSRPPSAAELLNAYAYKRGFMTSKGL-PD-----EYRAARYILKDYVSGKLLYCFPP  475 (562)
T ss_pred             --------------CCCCchHHHHHHHHHHhcchhhhccC-Cc-----chHHHHHHHHHHhCCeeeeeeCC
Confidence                          24566778999999999999999775 66     56999999999999998777543

>cd01856 YlqF YlqF

Probab=100.00  E-value=6.1e-32  Score=239.68  Aligned_cols=165  Identities=52%  Similarity=0.808  Sum_probs=138.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEE
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIA  106 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~  106 (375)
                      ||||||.++++++++.++++|+|++|+|++.|....+..+.+...++|+++|+||+||.+++....|.++++..+..+++
T Consensus         1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~   80 (171)
T cd01856           1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF   80 (171)
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence            99999999999999999999999999999998887666665555678999999999998766566787877655667899


Q ss_pred             EecCCccCHHHHHHHHHHHHhhh------hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCe
Q 017187          107 INAHSRSSVQKLLELVELKLKEV------ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV  180 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l~~~------~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~  180 (375)
                      +|++++.|+++|.+.+...++..      ......++++++|.||||||||+|+|.+           .....+++.||+
T Consensus        81 iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~~~  149 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRG-----------KKVAKVGNKPGV  149 (171)
T ss_pred             EECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCE
Confidence            99999999999999998875421      1123457899999999999999999997           344578899999


Q ss_pred             eeeeEEEEEccCCcEEEEEcCCCC
Q 017187          181 TQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       181 T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      |+..+.+.+.  ..++++||||++
T Consensus       150 T~~~~~~~~~--~~~~~iDtpG~~  171 (171)
T cd01856         150 TKGIQWIKIS--PGIYLLDTPGIL  171 (171)
T ss_pred             EeeeEEEEec--CCEEEEECCCCC
Confidence            9999887665  459999999985

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=99.96  E-value=6.6e-29  Score=217.06  Aligned_cols=151  Identities=28%  Similarity=0.428  Sum_probs=124.6

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCC-CcEEEEecCCcc
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCK-QDYIAINAHSRS  113 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g-~~vi~iSa~~~~  113 (375)
                      +++.++++|+|++|+|++.|....+..+.++.    .++|+|+|+||+||.+++....|.+++++.. ..++++|++++.
T Consensus         2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence            57889999999999999999888777777663    2489999999999998877778888886432 235778999999


Q ss_pred             CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC
Q 017187          114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP  193 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~  193 (375)
                      ++++|++.+...... .......+++++|.||||||||||+|.+           .+.+.+++.||+|++.+.+.+.  .
T Consensus        82 ~~~~L~~~l~~~~~~-~~~~~~~~v~~~G~~nvGKStliN~l~~-----------~~~~~~~~~~g~T~~~~~~~~~--~  147 (157)
T cd01858          82 GKGSLIQLLRQFSKL-HSDKKQISVGFIGYPNVGKSSIINTLRS-----------KKVCKVAPIPGETKVWQYITLM--K  147 (157)
T ss_pred             cHHHHHHHHHHHHhh-hccccceEEEEEeCCCCChHHHHHHHhc-----------CCceeeCCCCCeeEeEEEEEcC--C
Confidence            999999999876542 1123467899999999999999999997           4678999999999998876654  4


Q ss_pred             cEEEEEcCCC
Q 017187          194 SIYVLDTPGV  203 (375)
Q Consensus       194 ~~~liDTPGi  203 (375)
                      +++++||||+
T Consensus       148 ~~~liDtPGi  157 (157)
T cd01858         148 RIYLIDCPGV  157 (157)
T ss_pred             CEEEEECcCC
Confidence            5999999997

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.95  E-value=1.1e-26  Score=199.48  Aligned_cols=136  Identities=29%  Similarity=0.481  Sum_probs=117.1

Q ss_pred             HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCC
Q 017187           36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ++++++.++++|+|++|+|++.|.+..+..+.++.    .++|+++|+||+||.+++....|.+++++.+.+++++|+.+
T Consensus         2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~   81 (141)
T cd01857           2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK   81 (141)
T ss_pred             HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence            46778999999999999999999988877777763    37899999999999887777788888877778899999987


Q ss_pred             ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc
Q 017187          112 RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH  191 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~  191 (375)
                      +.+                      +++++|.||||||||+|+|.+           .+...++..||+|++.+.+.+..
T Consensus        82 ~~~----------------------~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~  128 (141)
T cd01857          82 ENA----------------------TIGLVGYPNVGKSSLINALVG-----------KKKVSVSATPGKTKHFQTIFLTP  128 (141)
T ss_pred             CCc----------------------EEEEECCCCCCHHHHHHHHhC-----------CCceeeCCCCCcccceEEEEeCC
Confidence            654                      589999999999999999997           34457888999999998877754


Q ss_pred             CCcEEEEEcCCCCCC
Q 017187          192 RPSIYVLDTPGVLVP  206 (375)
Q Consensus       192 ~~~~~liDTPGi~~~  206 (375)
                        +++++||||+..|
T Consensus       129 --~~~i~DtpG~~~p  141 (141)
T cd01857         129 --TITLCDCPGLVFP  141 (141)
T ss_pred             --CEEEEECCCcCCC
Confidence              5999999999876

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.94  E-value=3.3e-26  Score=203.09  Aligned_cols=143  Identities=31%  Similarity=0.495  Sum_probs=109.6

Q ss_pred             CeEEEEEeCCCCCCCCchhHhhc----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCC-----------
Q 017187           47 DLVIEVRDSRIPLSSAHPGLQPQ----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHS-----------  111 (375)
Q Consensus        47 DlVI~VvDar~p~s~~~~~l~~~----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~-----------  111 (375)
                      |+|++|+|||.|+++.++.+.+.    ..++|+|+|+||+||++++.+.+|.++|++....+.+.|+..           
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            89999999999999999888877    256999999999999999889999999965433333333321           


Q ss_pred             --------------ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187          112 --------------RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL  177 (375)
Q Consensus       112 --------------~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~  177 (375)
                                    ..|.+++++.+.+.... ......++++++|.||||||||||+|.+           .+.+.+++.
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~vG~pnvGKSslin~l~~-----------~~~~~~~~~  148 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNYSRN-KDIKTSITVGVVGFPNVGKSSLINSLKR-----------SRACNVGAT  148 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHHhhc-cccccCcEEEEEcCCCCCHHHHHHHHhC-----------cccceecCC
Confidence                          12233444444333222 2234468999999999999999999997           466799999


Q ss_pred             CCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187          178 PGVTQDIAGFKIAHRPSIYVLDTPGV  203 (375)
Q Consensus       178 pg~T~~~~~~~i~~~~~~~liDTPGi  203 (375)
                      ||+|++.+++.+.  .+++++||||+
T Consensus       149 pg~T~~~~~~~~~--~~~~l~DtPGi  172 (172)
T cd04178         149 PGVTKSMQEVHLD--KKVKLLDSPGI  172 (172)
T ss_pred             CCeEcceEEEEeC--CCEEEEECcCC
Confidence            9999999987765  35999999997

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.93  E-value=5.4e-25  Score=191.96  Aligned_cols=144  Identities=30%  Similarity=0.482  Sum_probs=116.3

Q ss_pred             CeEEEEEeCCCCCCCCchhHh-hc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-CCcEEEEecCCccCHHHHHHHH
Q 017187           47 DLVIEVRDSRIPLSSAHPGLQ-PQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSC-KQDYIAINAHSRSSVQKLLELV  122 (375)
Q Consensus        47 DlVI~VvDar~p~s~~~~~l~-~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-g~~vi~iSa~~~~gvk~Ll~~L  122 (375)
                      |+|++|+|++.|.++.+..+. ..  ..++|+|+|+||+||++++....|+.++++. +..++++|++++.|+++|.+.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i   80 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF   80 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence            899999999999988887776 23  4579999999999999877667787666433 4578999999999999999988


Q ss_pred             HHHHhhh-------hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcE
Q 017187          123 ELKLKEV-------ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI  195 (375)
Q Consensus       123 ~~~l~~~-------~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~  195 (375)
                      .+...+.       .......+++++|.||||||||+|+|.+           .....++..||+|++.+.+.+.  .++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~  147 (155)
T cd01849          81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLN-----------KLKLKVGNVPGTTTSQQEVKLD--NKI  147 (155)
T ss_pred             HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHc-----------cccccccCCCCcccceEEEEec--CCE
Confidence            6543211       1134578899999999999999999997           3446689999999999887664  469


Q ss_pred             EEEEcCCC
Q 017187          196 YVLDTPGV  203 (375)
Q Consensus       196 ~liDTPGi  203 (375)
                      +++||||+
T Consensus       148 ~liDtPG~  155 (155)
T cd01849         148 KLLDTPGI  155 (155)
T ss_pred             EEEECCCC
Confidence            99999997

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.92  E-value=4.6e-25  Score=206.57  Aligned_cols=187  Identities=18%  Similarity=0.209  Sum_probs=128.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhH-HHHHHHHhhCCCcEEEEecCCccC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNIL-NKWVRHFDSCKQDYIAINAHSRSS  114 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~-~~~~~~~~~~g~~vi~iSa~~~~g  114 (375)
                      ..++++|.+++|+|++.|..+.+ .+.++     ..+.|+++|+||+||.+.... .+|.+.|.+.+++++.+|++++.|
T Consensus        32 ~~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g  110 (245)
T TIGR00157        32 PIVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG  110 (245)
T ss_pred             cccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence            36889999999999998876543 34444     257899999999999864433 367777777788899999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCC-------CCCeeeeeEEE
Q 017187          115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP-------LPGVTQDIAGF  187 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~-------~pg~T~~~~~~  187 (375)
                      ++++.+.+..           ..++++|.||||||||||+|.+.           ....++.       -.+||++.+.+
T Consensus       111 i~eLf~~l~~-----------~~~~~~G~sgvGKStLiN~L~~~-----------~~~~t~~i~~~~~~G~hTT~~~~l~  168 (245)
T TIGR00157       111 LKELIEALQN-----------RISVFAGQSGVGKSSLINALDPS-----------VKQQVNDISSKLGLGKHTTTHVELF  168 (245)
T ss_pred             HHHHHhhhcC-----------CEEEEECCCCCCHHHHHHHHhhh-----------hhccccceeccCCCCCCcCCceEEE
Confidence            9998877642           26899999999999999999972           2222222       23489998887


Q ss_pred             EEccCCcEEEEEcCCCCCCCCCChh-HHH--------HHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhh
Q 017187          188 KIAHRPSIYVLDTPGVLVPSIPDIE-TGL--------KLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL  253 (375)
Q Consensus       188 ~i~~~~~~~liDTPGi~~~~~~~~~-~~~--------~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~  253 (375)
                      .+.   +.+++||||+..+.+.+.+ .++        .++-.+.+.+|.+..|.-+...-++-+..-...+|+.|
T Consensus       169 ~l~---~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y  240 (245)
T TIGR00157       169 HFH---GGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEISEWRYENY  240 (245)
T ss_pred             EcC---CcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHH
Confidence            772   3699999999998876543 111        12223334455554444444444433333344444443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01859 MJ1464 MJ1464

Probab=99.92  E-value=3.6e-24  Score=186.65  Aligned_cols=147  Identities=35%  Similarity=0.450  Sum_probs=117.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL  118 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L  118 (375)
                      ..++++|++|+|+|++.|....+..+.++  ..++|+++|+||+|+.+....+.|..+.+..+.+++++|++++.|+++|
T Consensus         8 ~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L   87 (156)
T cd01859           8 RIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKIL   87 (156)
T ss_pred             HHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHH
Confidence            44567999999999999887776666554  3578999999999998765555555444344567899999999999999


Q ss_pred             HHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEE
Q 017187          119 LELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL  198 (375)
Q Consensus       119 l~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~li  198 (375)
                      .+.+.+.++.   .....+++++|.|||||||++|.|.+           .....+++.+|+|++.+.+...  ..++++
T Consensus        88 ~~~l~~~~~~---~~~~~~~~~ig~~~~Gkssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~~~~  151 (156)
T cd01859          88 RRTIKELAKI---DGKEGKVGVVGYPNVGKSSIINALKG-----------RHSASTSPSPGYTKGEQLVKIT--SKIYLL  151 (156)
T ss_pred             HHHHHHHHhh---cCCCcEEEEECCCCCCHHHHHHHHhC-----------CCccccCCCCCeeeeeEEEEcC--CCEEEE
Confidence            9999888764   24567889999999999999999996           3456788899999887755443  359999


Q ss_pred             EcCCC
Q 017187          199 DTPGV  203 (375)
Q Consensus       199 DTPGi  203 (375)
                      ||||+
T Consensus       152 DtpGi  156 (156)
T cd01859         152 DTPGV  156 (156)
T ss_pred             ECcCC
Confidence            99997

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.92  E-value=1.6e-24  Score=195.03  Aligned_cols=156  Identities=27%  Similarity=0.319  Sum_probs=116.8

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhh----HHHHHHHH--hhCC---CcEEEE
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNI----LNKWVRHF--DSCK---QDYIAI  107 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~----~~~~~~~~--~~~g---~~vi~i  107 (375)
                      ..+...++++|+|++|+|++.+.......+.....++|+++|+||+|+.+.+.    .+.|.+.+  +..+   ..++++
T Consensus        26 ~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  105 (190)
T cd01855          26 NLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILI  105 (190)
T ss_pred             HHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEE
Confidence            34456789999999999999887666666644455789999999999986433    22343111  2222   258899


Q ss_pred             ecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE
Q 017187          108 NAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF  187 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~  187 (375)
                      |++++.|+++|++.+.+.++      ...+++++|.||||||||||+|++......   .+...+.++..||||++.+.+
T Consensus       106 SA~~~~gi~eL~~~l~~~l~------~~~~~~~~G~~nvGKStliN~l~~~~~~~~---~~~~~~~~~~~~gtT~~~~~~  176 (190)
T cd01855         106 SAKKGWGVEELINAIKKLAK------KGGDVYVVGATNVGKSTLINALLKKDNGKK---KLKDLLTTSPIPGTTLDLIKI  176 (190)
T ss_pred             ECCCCCCHHHHHHHHHHHhh------cCCcEEEEcCCCCCHHHHHHHHHHhccccc---ccccccccCCCCCeeeeeEEE
Confidence            99999999999999988774      345899999999999999999997321100   001346889999999999988


Q ss_pred             EEccCCcEEEEEcCCC
Q 017187          188 KIAHRPSIYVLDTPGV  203 (375)
Q Consensus       188 ~i~~~~~~~liDTPGi  203 (375)
                      .+..  +++++||||+
T Consensus       177 ~~~~--~~~~~DtPG~  190 (190)
T cd01855         177 PLGN--GKKLYDTPGI  190 (190)
T ss_pred             ecCC--CCEEEeCcCC
Confidence            7754  5899999997

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.92  E-value=1.8e-24  Score=211.74  Aligned_cols=172  Identities=23%  Similarity=0.298  Sum_probs=130.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      ..++++|+|++|+|+..|.... ..+.++     ..++|+++|+||+||++++..+.|.+.|+..++.++++|+.++.|+
T Consensus        85 ~~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI  163 (352)
T PRK12289         85 PPVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL  163 (352)
T ss_pred             hhhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence            4589999999999998764322 234444     2579999999999999877677888888777889999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-------eeeeeEEEE
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-------VTQDIAGFK  188 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-------~T~~~~~~~  188 (375)
                      ++|++.+...           .++|+|.||||||||||+|++           .....|+.++|       ||++.+.+.
T Consensus       164 ~eL~~~L~~k-----------i~v~iG~SgVGKSSLIN~L~~-----------~~~~~t~~vs~~~~rGrHTT~~~~l~~  221 (352)
T PRK12289        164 EALLEQLRNK-----------ITVVAGPSGVGKSSLINRLIP-----------DVELRVGKVSGKLGRGRHTTRHVELFE  221 (352)
T ss_pred             HHHhhhhccc-----------eEEEEeCCCCCHHHHHHHHcC-----------ccccccccccCCCCCCCCcCceeEEEE
Confidence            9988887432           489999999999999999997           34567777888       899998877


Q ss_pred             EccCCcEEEEEcCCCCCCCCCChhH-------HHH--HH-HhhcccccccCHHHHHHHH
Q 017187          189 IAHRPSIYVLDTPGVLVPSIPDIET-------GLK--LA-LSGSIKDSVVGEERIAQYL  237 (375)
Q Consensus       189 i~~~~~~~liDTPGi~~~~~~~~~~-------~~~--la-l~~~i~~~~~~~~~~a~~l  237 (375)
                      +..+  .+|+|||||..+.+.....       ..+  ++ -.+.+.||.+..|.-+...
T Consensus       222 l~~g--~~liDTPG~~~~~l~~~~~~l~~~F~e~~~~~~~~~CrF~dC~H~~EPgCaV~  278 (352)
T PRK12289        222 LPNG--GLLADTPGFNQPDLDCSPRELAHYFPEARQRLAQGNCQFNDCLHRDEPNCAVR  278 (352)
T ss_pred             CCCC--cEEEeCCCccccccccCHHHHHhhHHHHHHhHhhCceEccCCccCCCCChhhh
Confidence            7543  6999999999988742111       111  11 2355778877766555444

>PRK12288 GTPase RsgA; Reviewed

Probab=99.91  E-value=8.3e-24  Score=206.93  Aligned_cols=191  Identities=18%  Similarity=0.207  Sum_probs=131.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChh---hHHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPN---ILNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      -..+|+|.++.|.+.. |..+. ..+.++     ..++|.++|+||+||++..   ....|.+.|+..+++++.+|++++
T Consensus       116 ~iaANvD~vlIV~s~~-p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        116 PIAANIDQIVIVSAVL-PELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             eEEEEccEEEEEEeCC-CCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3468999999998864 33332 244444     3568999999999998754   245677777677889999999999


Q ss_pred             cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-------eeeeeE
Q 017187          113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-------VTQDIA  185 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-------~T~~~~  185 (375)
                      .|+++|.+.+...           .++|+|.||||||||||+|++           .....|+..++       ||+..+
T Consensus       194 ~GideL~~~L~~k-----------i~~~vG~sgVGKSTLiN~Ll~-----------~~~~~t~~is~~~~rGrHTT~~~~  251 (347)
T PRK12288        194 EGLEELEAALTGR-----------ISIFVGQSGVGKSSLINALLP-----------EAEILVGDVSDNSGLGQHTTTAAR  251 (347)
T ss_pred             cCHHHHHHHHhhC-----------CEEEECCCCCCHHHHHHHhcc-----------ccceeeccccCcCCCCcCceeeEE
Confidence            9999998887532           378999999999999999997           23345555554       788888


Q ss_pred             EEEEccCCcEEEEEcCCCCCCCCCChh-HHH--------HHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcc
Q 017187          186 GFKIAHRPSIYVLDTPGVLVPSIPDIE-TGL--------KLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR  256 (375)
Q Consensus       186 ~~~i~~~~~~~liDTPGi~~~~~~~~~-~~~--------~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~  256 (375)
                      .+.+..+  .+|+|||||....+.+.+ .++        .++-.+.+.||.+..|.-+...-++-+..-...+|+.|...
T Consensus       252 l~~l~~~--~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av~~g~i~~~Ry~~Y~~l  329 (347)
T PRK12288        252 LYHFPHG--GDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTCKFRDCKHDDDPGCALREAVEEGKIAETRFENYHRI  329 (347)
T ss_pred             EEEecCC--CEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHHHHH
Confidence            8877543  689999999998887522 112        12333445555555554444444444444444455554444


Q ss_pred             c
Q 017187          257 T  257 (375)
Q Consensus       257 ~  257 (375)
                      .
T Consensus       330 ~  330 (347)
T PRK12288        330 L  330 (347)
T ss_pred             H
Confidence            3

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=7.2e-23  Score=201.26  Aligned_cols=182  Identities=21%  Similarity=0.247  Sum_probs=136.5

Q ss_pred             cccceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh
Q 017187           12 GLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI   89 (375)
Q Consensus        12 ~~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~   89 (375)
                      +...++++.++-...-=-+-+..-.+|...+++.||+||+|+|++..++..+..+.++  ..++|+|+|+||+|-...  
T Consensus        50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--  127 (444)
T COG1160          50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--  127 (444)
T ss_pred             CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--
Confidence            3445555555531111001222334677799999999999999999999988888887  456999999999997632  


Q ss_pred             HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHh-hh-hcc---CCceEEEEEcCCCCChHHHHHHHHhhhcccc
Q 017187           90 LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLK-EV-ISR---EPTLLVMVVGVPNVGKSALINSIHQIALSRF  163 (375)
Q Consensus        90 ~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~-~~-~~~---~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~  163 (375)
                      .....+|| ..|. +++++||.++.|+.+|++.+...++ .. ...   ...++++++|.||||||||+|+|++      
T Consensus       128 e~~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilg------  200 (444)
T COG1160         128 EELAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILG------  200 (444)
T ss_pred             hhhHHHHH-hcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhcc------
Confidence            22334555 5565 7899999999999999999999873 21 111   2579999999999999999999998      


Q ss_pred             cccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187          164 PVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       164 ~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                           ..++.|++.|||||+.....+. ++..+.++||.|++...
T Consensus       201 -----eeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~  240 (444)
T COG1160         201 -----EERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKG  240 (444)
T ss_pred             -----CceEEecCCCCccccceeeeEEECCeEEEEEECCCCCccc
Confidence                 5789999999999998743332 34468999999998753

>PRK13796 GTPase YqeH; Provisional

Probab=99.90  E-value=7.1e-23  Score=202.28  Aligned_cols=156  Identities=29%  Similarity=0.361  Sum_probs=122.7

Q ss_pred             HHHHHHHhhhcC-eEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHHHHh-hCCC---cEEE
Q 017187           36 TRAIKHRLKISD-LVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVRHFD-SCKQ---DYIA  106 (375)
Q Consensus        36 ~~~i~~~l~~~D-lVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~-~~g~---~vi~  106 (375)
                      ++++.+.+...| +|++|+|+.+...+..+.+.++..++|+++|+||+||.++.    ...+|.+.+. ..+.   .++.
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~  138 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL  138 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            455666677666 99999999998888888888877789999999999998643    3455665443 3454   5889


Q ss_pred             EecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187          107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG  186 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~  186 (375)
                      +|++++.|++++++.+.+..       .+.++++||.||||||||||+|++..      .+..+..+++..||||++.+.
T Consensus       139 vSAk~g~gI~eL~~~I~~~~-------~~~~v~vvG~~NvGKSTLiN~L~~~~------~~~~~~~~~s~~pGTT~~~~~  205 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKYR-------EGRDVYVVGVTNVGKSTLINRIIKEI------TGEKDVITTSRFPGTTLDKIE  205 (365)
T ss_pred             EECCCCCCHHHHHHHHHHhc-------CCCeEEEEcCCCCcHHHHHHHHHhhc------cCccceEEecCCCCccceeEE
Confidence            99999999999999987653       23479999999999999999999621      012345779999999999988


Q ss_pred             EEEccCCcEEEEEcCCCCCC
Q 017187          187 FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       187 ~~i~~~~~~~liDTPGi~~~  206 (375)
                      +.+..  +.+++||||+..+
T Consensus       206 ~~l~~--~~~l~DTPGi~~~  223 (365)
T PRK13796        206 IPLDD--GSFLYDTPGIIHR  223 (365)
T ss_pred             EEcCC--CcEEEECCCcccc
Confidence            77754  4799999999754

>PRK00098 GTPase RsgA; Reviewed

Probab=99.89  E-value=4e-23  Score=198.91  Aligned_cols=146  Identities=21%  Similarity=0.266  Sum_probs=110.0

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCC-ChhhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLA-NPNILNKWVRHFDSCKQDYIAINAHSRS  113 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~~g~~vi~iSa~~~~  113 (375)
                      +..++++|++++|+|++.|.+..+ .+.++     ..++|+++|+||+||. +......|.+.+++.+++++++|++++.
T Consensus        75 q~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         75 KLIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             cceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            345799999999999987754432 23333     3578999999999997 3344556777776678889999999999


Q ss_pred             CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-------eeeeeEE
Q 017187          114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-------VTQDIAG  186 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-------~T~~~~~  186 (375)
                      |+++|.+.+.           +..++++|.||||||||||+|.+.           ....++..++       ||+..+.
T Consensus       154 gi~~L~~~l~-----------gk~~~~~G~sgvGKStlin~l~~~-----------~~~~~g~v~~~~~~G~htT~~~~~  211 (298)
T PRK00098        154 GLDELKPLLA-----------GKVTVLAGQSGVGKSTLLNALAPD-----------LELKTGEISEALGRGKHTTTHVEL  211 (298)
T ss_pred             cHHHHHhhcc-----------CceEEEECCCCCCHHHHHHHHhCC-----------cCCCCcceeccCCCCCcccccEEE
Confidence            9999887763           236899999999999999999971           2233444433       7887777


Q ss_pred             EEEccCCcEEEEEcCCCCCCCCCC
Q 017187          187 FKIAHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       187 ~~i~~~~~~~liDTPGi~~~~~~~  210 (375)
                      +.+..  ..+++||||+....+..
T Consensus       212 ~~~~~--~~~~~DtpG~~~~~~~~  233 (298)
T PRK00098        212 YDLPG--GGLLIDTPGFSSFGLHD  233 (298)
T ss_pred             EEcCC--CcEEEECCCcCccCCCC
Confidence            66653  47999999999766553

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.89  E-value=4.6e-22  Score=196.19  Aligned_cols=151  Identities=26%  Similarity=0.342  Sum_probs=119.4

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHH-HHhhCCC---cEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVR-HFDSCKQ---DYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~-~~~~~g~---~vi~iSa~~~  112 (375)
                      .....+|+|++|+|+.++..+..+.+.+...++|+++|+||+||+++.    ...+|++ ++++.+.   .++.+|++++
T Consensus        59 ~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g  138 (360)
T TIGR03597        59 SLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG  138 (360)
T ss_pred             hcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC
Confidence            345788999999999988888888888877789999999999998653    3445553 3444554   4889999999


Q ss_pred             cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC
Q 017187          113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR  192 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~  192 (375)
                      .|++++++.+.+..       .+.++++||.||||||||||+|++...      ++.+.++++..||||++.+.+.+.  
T Consensus       139 ~gv~eL~~~l~~~~-------~~~~v~~vG~~nvGKStliN~l~~~~~------~~~~~~~~s~~pgtT~~~~~~~~~--  203 (360)
T TIGR03597       139 NGIDELLDKIKKAR-------NKKDVYVVGVTNVGKSSLINKLLKQNN------GDKDVITTSPFPGTTLDLIEIPLD--  203 (360)
T ss_pred             CCHHHHHHHHHHHh-------CCCeEEEECCCCCCHHHHHHHHHhhcc------CCcceeeecCCCCeEeeEEEEEeC--
Confidence            99999999886652       235899999999999999999997211      112457899999999998877664  


Q ss_pred             CcEEEEEcCCCCCC
Q 017187          193 PSIYVLDTPGVLVP  206 (375)
Q Consensus       193 ~~~~liDTPGi~~~  206 (375)
                      .+++++||||+..+
T Consensus       204 ~~~~l~DtPG~~~~  217 (360)
T TIGR03597       204 DGHSLYDTPGIINS  217 (360)
T ss_pred             CCCEEEECCCCCCh
Confidence            34899999999865

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.88  E-value=2.6e-22  Score=192.26  Aligned_cols=197  Identities=19%  Similarity=0.108  Sum_probs=131.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      ..++++|++++|+|++.|..+. ..+.++     ..++|+++|+||+||.++.....|..++.+.+++++++|++++.|+
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi  152 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL  152 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence            4589999999999999887322 233443     3578999999999998764444566666567889999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcE
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI  195 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~  195 (375)
                      ++|...+..           ..++++|.||||||||||+|.+......   | .-....+.-++||+..+.+++..  ..
T Consensus       153 ~~L~~~L~~-----------k~~~~~G~sg~GKSTlin~l~~~~~~~~---g-~v~~~~~~g~~tT~~~~~~~~~~--~~  215 (287)
T cd01854         153 DELREYLKG-----------KTSVLVGQSGVGKSTLINALLPDLDLAT---G-EISEKLGRGRHTTTHRELFPLPG--GG  215 (287)
T ss_pred             HHHHhhhcc-----------ceEEEECCCCCCHHHHHHHHhchhhccc---c-ceeccCCCCCcccceEEEEEcCC--CC
Confidence            998877642           3699999999999999999997211100   0 00011223345888888777753  36


Q ss_pred             EEEEcCCCCCCCCCC---hh------HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhc
Q 017187          196 YVLDTPGVLVPSIPD---IE------TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN  255 (375)
Q Consensus       196 ~liDTPGi~~~~~~~---~~------~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~  255 (375)
                      +++||||+..+.+..   .+      .-..++-.+.+.+|.+..|.-+...-++-+..-...+|+.|..
T Consensus       216 ~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y~~  284 (287)
T cd01854         216 LLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESYLK  284 (287)
T ss_pred             EEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            899999997765322   11      1112344455666666666555555555454445555555443

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=6.4e-22  Score=186.84  Aligned_cols=193  Identities=21%  Similarity=0.240  Sum_probs=135.0

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHH--HHHHHHhhCCCcEEEEecCCcc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILN--KWVRHFDSCKQDYIAINAHSRS  113 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~--~~~~~~~~~g~~vi~iSa~~~~  113 (375)
                      ..+.++|-+++|+.+-.|..+. ..+.++     ..+...++|+||+||++.+...  ++...|++.|++++.+|++++.
T Consensus        75 p~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~  153 (301)
T COG1162          75 PPVANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD  153 (301)
T ss_pred             CcccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcc
Confidence            4567899999999998886654 355555     3677889999999999876655  5677777899999999999999


Q ss_pred             CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh-----hhcccccccccccccccCCCCCeeeeeEEEE
Q 017187          114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ-----IALSRFPVQEKTKRATVGPLPGVTQDIAGFK  188 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~-----~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~  188 (375)
                      ++++|.+.+...           ..+++|.||||||||||+|.+     +|.++.. .++++|        ||+....+.
T Consensus       154 ~~~~l~~~l~~~-----------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~-~~rGkH--------TTt~~~l~~  213 (301)
T COG1162         154 GLEELAELLAGK-----------ITVLLGQSGVGKSTLINALLPELNQKTGEISEK-LGRGRH--------TTTHVELFP  213 (301)
T ss_pred             cHHHHHHHhcCC-----------eEEEECCCCCcHHHHHHhhCchhhhhhhhhccc-CCCCCC--------ccceEEEEE
Confidence            999988877532           588999999999999999986     4444422 233343        466666666


Q ss_pred             EccCCcEEEEEcCCCCCCCCCChh-HHHH--------HHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcc
Q 017187          189 IAHRPSIYVLDTPGVLVPSIPDIE-TGLK--------LALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR  256 (375)
Q Consensus       189 i~~~~~~~liDTPGi~~~~~~~~~-~~~~--------lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~  256 (375)
                      +..  +.+++|||||.+..+...+ ..+.        ++-.+.+++|.+..|.-+.....+-+......+|++|...
T Consensus       214 l~~--gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i~~~Ry~~Y~kl  288 (301)
T COG1162         214 LPG--GGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKL  288 (301)
T ss_pred             cCC--CCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence            643  4799999999999884321 1111        1223336666666555555555555555555555555554

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.80  E-value=1.2e-18  Score=175.74  Aligned_cols=161  Identities=22%  Similarity=0.310  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEec
Q 017187           33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINA  109 (375)
Q Consensus        33 ~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa  109 (375)
                      ....+++...++.+|+|++|+|++.+.+..+..+.++  ..++|+++|+||+|+.+.+..  ..+++ ..+. +++++||
T Consensus        66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-~lg~~~~~~vSa  142 (429)
T TIGR03594        66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-SLGFGEPIPISA  142 (429)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-hcCCCCeEEEeC
Confidence            3344667778999999999999998877766566555  357899999999999765432  12233 4555 7899999


Q ss_pred             CCccCHHHHHHHHHHHHhhhh----ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187          110 HSRSSVQKLLELVELKLKEVI----SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA  185 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~~~----~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~  185 (375)
                      +++.|+.++++.+...++...    .....++++++|.||||||||+|+|.+           .....+++.||||++..
T Consensus       143 ~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~-----------~~~~~~~~~~gtt~~~~  211 (429)
T TIGR03594       143 EHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLG-----------EERVIVSDIAGTTRDSI  211 (429)
T ss_pred             CcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHC-----------CCeeecCCCCCceECcE
Confidence            999999999999988775421    123458999999999999999999997           34466788999999876


Q ss_pred             EEEEc-cCCcEEEEEcCCCCCCC
Q 017187          186 GFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       186 ~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                      ...+. .+..+.++||||+....
T Consensus       212 ~~~~~~~~~~~~liDT~G~~~~~  234 (429)
T TIGR03594       212 DIPFERNGKKYLLIDTAGIRRKG  234 (429)
T ss_pred             eEEEEECCcEEEEEECCCccccc
Confidence            43332 33468999999997643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=1.8e-18  Score=176.75  Aligned_cols=156  Identities=25%  Similarity=0.268  Sum_probs=114.8

Q ss_pred             HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCc
Q 017187           36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSR  112 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~  112 (375)
                      .+++...++.+|+||+|+|++.+.+.....+.++  ..++|+++|+||+|+.....  ...+++ ..+. .++++||+++
T Consensus       108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g  184 (472)
T PRK03003        108 AEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHG  184 (472)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCC
Confidence            3456667899999999999998766544445444  35789999999999965321  222233 2333 4679999999


Q ss_pred             cCHHHHHHHHHHHHhhh-h---ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE
Q 017187          113 SSVQKLLELVELKLKEV-I---SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK  188 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~-~---~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~  188 (375)
                      .|+++|++++...+++. .   ......+++++|.||||||||+|+|.+           .....+++.||+|++.....
T Consensus       185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~-----------~~~~~~s~~~gtT~d~~~~~  253 (472)
T PRK03003        185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAG-----------EERSVVDDVAGTTVDPVDSL  253 (472)
T ss_pred             CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCccCCcceEE
Confidence            99999999998777542 1   123468999999999999999999997           34456888999999875322


Q ss_pred             E-ccCCcEEEEEcCCCCC
Q 017187          189 I-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       189 i-~~~~~~~liDTPGi~~  205 (375)
                      + ..+..+.++||||+..
T Consensus       254 ~~~~~~~~~l~DTaG~~~  271 (472)
T PRK03003        254 IELGGKTWRFVDTAGLRR  271 (472)
T ss_pred             EEECCEEEEEEECCCccc
Confidence            2 2234588999999864

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=5e-18  Score=171.70  Aligned_cols=158  Identities=23%  Similarity=0.318  Sum_probs=117.4

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCcc
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRS  113 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~  113 (375)
                      +++...+..+|++|+|+|++.+.+..+..+.++  ..++|+++|+||+|+.+.+  ....+++ ..+. .++++||+++.
T Consensus        72 ~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         72 EQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-SLGLGEPYPISAEHGR  148 (435)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-hcCCCCCEEEEeeCCC
Confidence            445567899999999999998777665555554  3478999999999976532  2223333 3454 47899999999


Q ss_pred             CHHHHHHHHHHHHhhh---hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-
Q 017187          114 SVQKLLELVELKLKEV---ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-  189 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~---~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-  189 (375)
                      |+.++++.+.......   ......++++++|.||||||||+|+|++           .....+++.||+|++.....+ 
T Consensus       149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~-----------~~~~~~~~~~gtt~~~~~~~~~  217 (435)
T PRK00093        149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLG-----------EERVIVSDIAGTTRDSIDTPFE  217 (435)
T ss_pred             CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCceEEEEEEEEE
Confidence            9999999887633221   1123578999999999999999999997           345778899999998864333 


Q ss_pred             ccCCcEEEEEcCCCCCCCC
Q 017187          190 AHRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       190 ~~~~~~~liDTPGi~~~~~  208 (375)
                      ..+..+.++||||+.....
T Consensus       218 ~~~~~~~lvDT~G~~~~~~  236 (435)
T PRK00093        218 RDGQKYTLIDTAGIRRKGK  236 (435)
T ss_pred             ECCeeEEEEECCCCCCCcc
Confidence            2334689999999976543

>PRK01889 GTPase RsgA; Reviewed

Probab=99.77  E-value=4e-18  Score=167.94  Aligned_cols=198  Identities=18%  Similarity=0.122  Sum_probs=126.8

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhh-HHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNI-LNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      .++++|.|++|+++..++..  ..++++     ..+.+.++|+||+||++... ...+...+ ..+++++++|++++.|+
T Consensus       109 iaANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl  185 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGL  185 (356)
T ss_pred             EEEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccH
Confidence            36899999999999633332  245555     35788899999999987521 22333333 46789999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccCCc
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPS  194 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~~~  194 (375)
                      ++|.+++.          .+-+++++|.||||||||+|+|.+.-....     +.... .+....+|+..+.+.+..  +
T Consensus       186 ~~L~~~L~----------~g~~~~lvG~sgvGKStLin~L~g~~~~~~-----G~i~~~~~~g~~tt~~~~l~~l~~--~  248 (356)
T PRK01889        186 DVLAAWLS----------GGKTVALLGSSGVGKSTLVNALLGEEVQKT-----GAVREDDSKGRHTTTHRELHPLPS--G  248 (356)
T ss_pred             HHHHHHhh----------cCCEEEEECCCCccHHHHHHHHHHhcccce-----eeEEECCCCCcchhhhccEEEecC--C
Confidence            99888873          234799999999999999999997211100     00000 001112455545554543  3


Q ss_pred             EEEEEcCCCCCCCCCChhHHH--------HHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccccc
Q 017187          195 IYVLDTPGVLVPSIPDIETGL--------KLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEV  259 (375)
Q Consensus       195 ~~liDTPGi~~~~~~~~~~~~--------~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~~~  259 (375)
                      .+++||||+..+.+.+.+.++        .++-.+.+.+|....|.-+...-.+-...-+..+|+.|.....+
T Consensus       249 ~~l~DtpG~~~~~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~~~Y~~l~~e  321 (356)
T PRK01889        249 GLLIDTPGMRELQLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQRE  321 (356)
T ss_pred             CeecCCCchhhhcccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            689999999888777654332        23333456676666555555544444444555667666665444

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.76  E-value=1.9e-17  Score=176.84  Aligned_cols=157  Identities=25%  Similarity=0.287  Sum_probs=116.8

Q ss_pred             HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCC
Q 017187           35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHS  111 (375)
Q Consensus        35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~  111 (375)
                      ..+++...++.+|++|+|+|++..++..+..+.+.  ..++|+++|+||+|+.....  ...+++ ..+. .++++||++
T Consensus       344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~  420 (712)
T PRK09518        344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMH  420 (712)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCC
Confidence            34566778999999999999998766655555554  46799999999999865322  122333 2332 468999999


Q ss_pred             ccCHHHHHHHHHHHHhhhhc------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187          112 RSSVQKLLELVELKLKEVIS------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA  185 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~~~~------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~  185 (375)
                      +.|+.+|++++.+.++....      .....+|+++|.||||||||+|+|.+           .+...++..||||++..
T Consensus       421 g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~-----------~~~~~v~~~~gtT~d~~  489 (712)
T PRK09518        421 GRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTH-----------EERAVVNDLAGTTRDPV  489 (712)
T ss_pred             CCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhC-----------ccccccCCCCCCCcCcc
Confidence            99999999998877754211      23357999999999999999999997           34456788999999886


Q ss_pred             EEEE-ccCCcEEEEEcCCCCC
Q 017187          186 GFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       186 ~~~i-~~~~~~~liDTPGi~~  205 (375)
                      ...+ ..+..+.++||||+..
T Consensus       490 ~~~~~~~~~~~~liDTaG~~~  510 (712)
T PRK09518        490 DEIVEIDGEDWLFIDTAGIKR  510 (712)
T ss_pred             eeEEEECCCEEEEEECCCccc
Confidence            3222 2334688999999865

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.69  E-value=3.5e-17  Score=142.73  Aligned_cols=98  Identities=21%  Similarity=0.282  Sum_probs=68.7

Q ss_pred             HHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhh-----hcccccc
Q 017187           91 NKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQI-----ALSRFPV  165 (375)
Q Consensus        91 ~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~-----g~~~~~~  165 (375)
                      ++|.+.|++.|++++.+|++++.++++|.+.+..           -.++++|.+|||||||||+|.+.     +.++.  
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~-----------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~--   68 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG-----------KTSVLLGQSGVGKSSLINALLPEAKQKTGEISE--   68 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT-----------SEEEEECSTTSSHHHHHHHHHTSS----S------
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC-----------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc--
Confidence            4688889899999999999999999998888753           36999999999999999999972     11211  


Q ss_pred             cccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC
Q 017187          166 QEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       166 ~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~  210 (375)
                             ..+.--.||+..+.+.+..  +.+||||||+..+.+..
T Consensus        69 -------~~~rGkHTTt~~~l~~l~~--g~~iIDTPGf~~~~l~~  104 (161)
T PF03193_consen   69 -------KTGRGKHTTTHRELFPLPD--GGYIIDTPGFRSFGLWH  104 (161)
T ss_dssp             -----------------SEEEEEETT--SEEEECSHHHHT--GCC
T ss_pred             -------ccCCCcccCCCeeEEecCC--CcEEEECCCCCcccccc
Confidence                   1111124567777776643  58999999999988774

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.43  E-value=2.3e-13  Score=118.49  Aligned_cols=65  Identities=31%  Similarity=0.467  Sum_probs=48.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCCCChh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSIPDIE  212 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~~~~~  212 (375)
                      ++|+++|.||||||||+|+|.+            ....++++||+|.+.....+. .+..+.++||||+++......+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg------------~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e   66 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTG------------AKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE   66 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHT------------TSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC------------CCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH
Confidence            4799999999999999999997            347899999999998743333 2357999999999987655543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.43  E-value=6.1e-14  Score=131.79  Aligned_cols=97  Identities=30%  Similarity=0.374  Sum_probs=69.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCCCChh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSIPDIE  212 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~~~~~  212 (375)
                      +...|+++|.||||||||+|+|.+           .+.+.||+.|.|||+.. ++......++.++||||+..|.-.-.+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G-----------~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~   73 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGE   73 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc-----------CceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHH
Confidence            345799999999999999999998           68899999999999876 455566678999999999998544433


Q ss_pred             HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchh
Q 017187          213 TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW  250 (375)
Q Consensus       213 ~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~  250 (375)
                      .+.+.|. .++++        +|.++++.+..+.....
T Consensus        74 ~m~~~a~-~sl~d--------vDlilfvvd~~~~~~~~  102 (298)
T COG1159          74 LMNKAAR-SALKD--------VDLILFVVDADEGWGPG  102 (298)
T ss_pred             HHHHHHH-HHhcc--------CcEEEEEEeccccCCcc
Confidence            3333333 22221        34455555555544433

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.42  E-value=1.8e-13  Score=135.60  Aligned_cols=92  Identities=28%  Similarity=0.409  Sum_probs=69.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~~~  210 (375)
                      ..+++++++|.||||||||+|+|.+           ..++.|++.|||||++..  +.+.+. ++.++||.|++.....-
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~-----------~d~AIVTdI~GTTRDviee~i~i~G~-pv~l~DTAGiRet~d~V  282 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLG-----------RDRAIVTDIAGTTRDVIEEDINLNGI-PVRLVDTAGIRETDDVV  282 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhc-----------CCceEecCCCCCccceEEEEEEECCE-EEEEEecCCcccCccHH
Confidence            5689999999999999999999998           578999999999999975  334433 68999999999765555


Q ss_pred             hhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCC
Q 017187          211 IETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG  245 (375)
Q Consensus       211 ~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~  245 (375)
                      +..|...|...         ..-||.++++++.+.
T Consensus       283 E~iGIeRs~~~---------i~~ADlvL~v~D~~~  308 (454)
T COG0486         283 ERIGIERAKKA---------IEEADLVLFVLDASQ  308 (454)
T ss_pred             HHHHHHHHHHH---------HHhCCEEEEEEeCCC
Confidence            55566655442         222455555555554

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.38  E-value=4.9e-13  Score=126.90  Aligned_cols=94  Identities=28%  Similarity=0.382  Sum_probs=71.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCCCChh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSIPDIE  212 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~~~~~  212 (375)
                      ...+++|.|+||||||||+++|.+            ....+.++|.||+.+. ++....+..+++|||||+++..+.+.+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~------------AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN  234 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTT------------AKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN  234 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhc------------CCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence            456899999999999999999996            5688999999999987 444445557999999999998888777


Q ss_pred             HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCC
Q 017187          213 TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTP  247 (375)
Q Consensus       213 ~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~  247 (375)
                      ...+.|+..        -..+++.++|+++.++.+
T Consensus       235 ~IE~qAi~A--------L~hl~~~IlF~~D~Se~c  261 (346)
T COG1084         235 EIERQAILA--------LRHLAGVILFLFDPSETC  261 (346)
T ss_pred             HHHHHHHHH--------HHHhcCeEEEEEcCcccc
Confidence            666666542        223455566666665544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.27  E-value=1.5e-11  Score=109.88  Aligned_cols=66  Identities=30%  Similarity=0.463  Sum_probs=54.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~  210 (375)
                      ....-|+++|.||||||||||+|.+          +..-+.+|..||.||.+..+.+...  +.++|.||+.......
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~----------~k~LArtSktPGrTq~iNff~~~~~--~~lVDlPGYGyAkv~k   87 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTN----------QKNLARTSKTPGRTQLINFFEVDDE--LRLVDLPGYGYAKVPK   87 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhC----------CcceeecCCCCCccceeEEEEecCc--EEEEeCCCcccccCCH
Confidence            3455799999999999999999997          1235999999999999988777643  8999999998765544

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2e-11  Score=121.01  Aligned_cols=64  Identities=33%  Similarity=0.586  Sum_probs=54.0

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~  206 (375)
                      -..+++++++|.||||||||+|+|.+           ..++.|+++||||||.....+ ..+..++|+||.|++..
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~-----------~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~  329 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSR-----------EDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE  329 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhc-----------CCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc
Confidence            35679999999999999999999997           578999999999999874333 23346999999999983

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.21  E-value=3.1e-11  Score=99.60  Aligned_cols=59  Identities=39%  Similarity=0.613  Sum_probs=47.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~  207 (375)
                      +|+|+|.||||||||+|+|.+           .+.+.++..|++|+....  +.+ ....+.++||||+.+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~-----------~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~   61 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG-----------KKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGE   61 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT-----------STSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSS
T ss_pred             CEEEECCCCCCHHHHHHHHhc-----------cccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccc
Confidence            589999999999999999997           345788999999999853  223 33357899999998754

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.20  E-value=2.1e-11  Score=120.72  Aligned_cols=60  Identities=37%  Similarity=0.467  Sum_probs=50.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ..|++||.||||||||+|.|.+           .+.+.|+++||+||+...  ..+... .+.+|||+|+..-.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g-----------~r~AIV~D~pGvTRDr~y~~~~~~~~-~f~lIDTgGl~~~~   65 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTG-----------RRIAIVSDTPGVTRDRIYGDAEWLGR-EFILIDTGGLDDGD   65 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC-----------CeeeEeecCCCCccCCccceeEEcCc-eEEEEECCCCCcCC
Confidence            4699999999999999999998           578999999999999862  344443 59999999998644

>TIGR00436 era GTP-binding protein Era

Probab=99.09  E-value=2.1e-10  Score=109.00  Aligned_cols=59  Identities=34%  Similarity=0.564  Sum_probs=48.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~  206 (375)
                      +|+++|.||||||||+|+|.+           .+.+.+++.|+||++.. .+......++.++||||+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~-----------~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~   61 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHG-----------QKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK   61 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence            589999999999999999997           45677899999999865 333334446899999999875

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.05  E-value=4.9e-10  Score=101.30  Aligned_cols=62  Identities=27%  Similarity=0.303  Sum_probs=46.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccC-CCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVG-PLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~-~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~~  208 (375)
                      ++|+++|.||||||||+|+|++           .+...++ ..+|+|+..+.... ..+..+.++||||+..+..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg-----------~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~   64 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILG-----------REVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV   64 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhC-----------CCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence            3799999999999999999997           2233333 25688888775332 2344699999999998754

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.00  E-value=1.4e-09  Score=102.13  Aligned_cols=65  Identities=28%  Similarity=0.414  Sum_probs=51.1

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~  207 (375)
                      ....++|+|+|.+|||||||+|+|++           ...+.+++.+++|+..+.+.. ..+..+.++||||+.+..
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg-----------~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~   93 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFG-----------ERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV   93 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence            36678999999999999999999998           345667777778887775433 234468999999998753

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.99  E-value=6.3e-10  Score=104.74  Aligned_cols=68  Identities=29%  Similarity=0.378  Sum_probs=55.0

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~~~~  210 (375)
                      ..+-++|+|+|.||||||||+|.+.+           .+.+.|+..+.|||....-.+ ....++.++||||+..++.-.
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig-----------~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r  137 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIG-----------QKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHR  137 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhC-----------CccccccccccceeeeeeEEEecCceEEEEecCCcccccchhh
Confidence            45678999999999999999999998           577888888999987764323 334579999999999876543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.98  E-value=6.7e-10  Score=110.77  Aligned_cols=59  Identities=27%  Similarity=0.350  Sum_probs=47.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--EccCCcEEEEEcCCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~~~~~~~liDTPGi~~~~  207 (375)
                      .|++||.||||||||+|+|.+            ....+++.|+||+......  ......+.++||||+..+.
T Consensus       161 dValVG~PNaGKSTLln~Lt~------------~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a  221 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSA------------AKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA  221 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhC------------CcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence            599999999999999999996            3358999999999987433  3333359999999998654

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.92  E-value=3.3e-09  Score=104.54  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=48.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      ...+|+++|.||||||||+|+|.+            ..+.+.+.||+|++...  +.+.++..+.++||||+..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~------------~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~  249 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTG------------ADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR  249 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC------------CceeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence            458999999999999999999997            22567788999998864  3343445799999999843

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.92  E-value=5.7e-09  Score=105.81  Aligned_cols=63  Identities=33%  Similarity=0.517  Sum_probs=50.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP  206 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~  206 (375)
                      ..+++|+++|.||||||||+|+|.+           ...+.+++.||||++.....+. .+.++.++||||+...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~-----------~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~  264 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLK-----------QDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH  264 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence            4678999999999999999999997           3456788999999997643322 2335889999999754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.92  E-value=4.6e-09  Score=106.84  Aligned_cols=62  Identities=32%  Similarity=0.549  Sum_probs=50.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~  206 (375)
                      ..+++|+++|.||||||||+|+|.+           ...+.+++.||+|++...  +.+. +..+.++||||+..+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~~-g~~i~l~DT~G~~~~  276 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLG-----------EERAIVTDIAGTTRDVIEEHINLD-GIPLRLIDTAGIRET  276 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcccccEEEEEEEC-CeEEEEEeCCCCCCC
Confidence            4568999999999999999999997           345678899999998764  3333 346899999999753

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.90  E-value=4.6e-09  Score=108.64  Aligned_cols=65  Identities=34%  Similarity=0.515  Sum_probs=52.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCCCChh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSIPDIE  212 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~~~~~  212 (375)
                      ..+++++|.||||||||+|+|.+            ...+||+.||+|-+...  ++.. +..+.++|.||+++....+.+
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG------------~~q~VgNwpGvTVEkkeg~~~~~-~~~i~ivDLPG~YSL~~~S~D   69 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTG------------ANQKVGNWPGVTVEKKEGKLKYK-GHEIEIVDLPGTYSLTAYSED   69 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhc------------cCceecCCCCeeEEEEEEEEEec-CceEEEEeCCCcCCCCCCCch
Confidence            34699999999999999999997            56899999999988763  3333 335999999999987655544

>PTZ00258 GTP-binding protein; Provisional

Probab=98.88  E-value=3.7e-09  Score=104.89  Aligned_cols=63  Identities=24%  Similarity=0.395  Sum_probs=49.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCc
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPS  194 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~  194 (375)
                      ...++|++||.||||||||+|+|.+            ..+.+++.|+||+++..  ..+..                ..+
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~------------~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aq   86 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCK------------QQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQ   86 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhc------------CcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCC
Confidence            5677999999999999999999985            44789999999988763  22221                124


Q ss_pred             EEEEEcCCCCCCC
Q 017187          195 IYVLDTPGVLVPS  207 (375)
Q Consensus       195 ~~liDTPGi~~~~  207 (375)
                      +.++||||+....
T Consensus        87 i~lvDtpGLv~ga   99 (390)
T PTZ00258         87 LDITDIAGLVKGA   99 (390)
T ss_pred             eEEEECCCcCcCC
Confidence            8999999998643

>PRK00089 era GTPase Era; Reviewed

Probab=98.88  E-value=4.5e-09  Score=100.85  Aligned_cols=62  Identities=35%  Similarity=0.551  Sum_probs=49.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ...|+++|.||||||||+|+|.+           .+.+.+++.|+||+.... +......++.++||||+..+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g-----------~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~   67 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK   67 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhC-----------CceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence            45799999999999999999997           456778889999987653 222233479999999998765

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.87  E-value=7.9e-09  Score=92.71  Aligned_cols=119  Identities=18%  Similarity=0.192  Sum_probs=80.5

Q ss_pred             HhcccccceEEeeC--C--C--cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEE
Q 017187            8 KKGLGLGEMGFTKG--G--G--NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIAL   79 (375)
Q Consensus         8 ~~~~~~g~~~~~~~--~--~--~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVl   79 (375)
                      .++++.........  .  .  .+-..|||.. ..+.+...+..+|++|+|+|+..+...........  ..+.|+++|+
T Consensus        51 ~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~-f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvl  129 (188)
T PF00009_consen   51 ERGITIDLSFISFEKNENNRKITLIDTPGHED-FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVL  129 (188)
T ss_dssp             HCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEE
T ss_pred             hcccccccccccccccccccceeecccccccc-eeecccceecccccceeeeecccccccccccccccccccccceEEee
Confidence            34555554444443  2  1  2456899964 66778888999999999999998765543333333  4578999999


Q ss_pred             EcCCCCChhh---HHHHHHHH-hhC------CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           80 NKKDLANPNI---LNKWVRHF-DSC------KQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        80 NK~DL~~~~~---~~~~~~~~-~~~------g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ||+|+.....   .+++.+.+ +..      ..+++++|+.++.|+..|++.+.+++|
T Consensus       130 NK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  130 NKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             ETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             eeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            9999983321   22233222 211      246999999999999999999988775

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01900 YchF YchF subfamily

Probab=98.87  E-value=3.4e-09  Score=100.71  Aligned_cols=57  Identities=28%  Similarity=0.445  Sum_probs=44.2

Q ss_pred             EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC----------------CcEEEEE
Q 017187          138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR----------------PSIYVLD  199 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~----------------~~~~liD  199 (375)
                      +++||.||||||||+|+|.+            ....+++.|++|++...  ..+...                ..+.++|
T Consensus         1 igivG~PN~GKSTLfn~Lt~------------~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD   68 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTK------------AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVD   68 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhC------------CCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEE
Confidence            47999999999999999997            33588999999988763  223221                1389999


Q ss_pred             cCCCCCC
Q 017187          200 TPGVLVP  206 (375)
Q Consensus       200 TPGi~~~  206 (375)
                      |||+...
T Consensus        69 ~pGl~~~   75 (274)
T cd01900          69 IAGLVKG   75 (274)
T ss_pred             CCCcCCC
Confidence            9999854

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.87  E-value=7.1e-09  Score=99.53  Aligned_cols=64  Identities=27%  Similarity=0.365  Sum_probs=46.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE-EEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF-KIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~-~i~~~~~~~liDTPGi~~~~  207 (375)
                      ...++|+++|.+||||||++|+|++           ...+.+++.+++|...... ....+..+.+|||||+.+..
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG-----------~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~  100 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIG-----------ERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG  100 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH
Confidence            5678999999999999999999997           3445556665555443321 11234469999999998753

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.86  E-value=6e-09  Score=102.37  Aligned_cols=59  Identities=29%  Similarity=0.416  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC----------------CcEEE
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR----------------PSIYV  197 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~----------------~~~~l  197 (375)
                      +++++||.||||||||+|+|.+            ..+.+++.|+||++...  +.+...                ..+.+
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~------------~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~l   70 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTK------------AGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEF   70 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------------CCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEE
Confidence            5799999999999999999997            33788999999988762  233221                13899


Q ss_pred             EEcCCCCCC
Q 017187          198 LDTPGVLVP  206 (375)
Q Consensus       198 iDTPGi~~~  206 (375)
                      +||||+...
T Consensus        71 vD~pGL~~~   79 (364)
T PRK09601         71 VDIAGLVKG   79 (364)
T ss_pred             EECCCCCCC
Confidence            999999853

>PRK15494 era GTPase Era; Provisional

Probab=98.84  E-value=7.9e-09  Score=101.47  Aligned_cols=62  Identities=34%  Similarity=0.555  Sum_probs=49.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ...+|+++|.||||||||+|+|.+           .+.+.+++.|+||++...  +.. .+.++.++||||+..+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~-----------~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~  114 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIG-----------EKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK  114 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhC-----------CceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc
Confidence            456899999999999999999997           355678889999988653  222 33468999999997643

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.84  E-value=4.7e-09  Score=102.75  Aligned_cols=58  Identities=28%  Similarity=0.434  Sum_probs=47.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~  206 (375)
                      .|++||+||||||||+|+|.+            ....++++|+||+.+..  +.+.....+.++||||+...
T Consensus       160 dVglVG~PNaGKSTLln~ls~------------a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g  219 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG  219 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHc------------CCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence            589999999999999999996            33668999999999874  33434456999999999764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.83  E-value=1e-08  Score=106.11  Aligned_cols=65  Identities=31%  Similarity=0.355  Sum_probs=47.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC-CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL-PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~-pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~  209 (375)
                      ..++|+++|.|||||||++|+|++           .+...++.. |+||+.........+..+.+|||||+......
T Consensus       117 fslrIvLVGKTGVGKSSLINSILG-----------ekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~d  182 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFG-----------EVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASD  182 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc-----------cccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccc
Confidence            457899999999999999999997           234455544 67776543333334457999999999987543

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG1159 Era GTPase [General function prediction only]

Probab=98.83  E-value=2.7e-08  Score=93.94  Aligned_cols=113  Identities=23%  Similarity=0.273  Sum_probs=85.5

Q ss_pred             ccceEEeeCCC---cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc-C-CCCEEEEEEcCCCCCh
Q 017187           13 LGEMGFTKGGG---NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL-S-AKRRVIALNKKDLANP   87 (375)
Q Consensus        13 ~g~~~~~~~~~---~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~-~-~kp~IiVlNK~DL~~~   87 (375)
                      -.+++|-+.|+   +.+-+--+|+   +.+++.+..||+|++|+|+..++...+..+.+.+ . ..|+|+++||+|.+.+
T Consensus        53 ~~QiIfvDTPGih~pk~~l~~~m~---~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~  129 (298)
T COG1159          53 NAQIIFVDTPGIHKPKHALGELMN---KAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP  129 (298)
T ss_pred             CceEEEEeCCCCCCcchHHHHHHH---HHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence            35778888884   1333334444   4455889999999999999998887766665553 2 4699999999999987


Q ss_pred             hh-HHHHHHHHhhC--CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           88 NI-LNKWVRHFDSC--KQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        88 ~~-~~~~~~~~~~~--g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +. +....+++...  ..+++++||.++.+++.|++.+..++++
T Consensus       130 ~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         130 KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            66 45666666432  2379999999999999999999999876

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.83  E-value=6.4e-09  Score=102.30  Aligned_cols=87  Identities=23%  Similarity=0.428  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCc
Q 017187          115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS  194 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~  194 (375)
                      +.+....+++.+...  ....++|+|+|.+|+|||||||+|++.|...      ...+.||.. .||.....|.....++
T Consensus        17 ~~~~~s~i~~~l~~~--~~~~l~IaV~G~sGsGKSSfINalrGl~~~d------~~aA~tGv~-etT~~~~~Y~~p~~pn   87 (376)
T PF05049_consen   17 LQEVVSKIREALKDI--DNAPLNIAVTGESGSGKSSFINALRGLGHED------EGAAPTGVV-ETTMEPTPYPHPKFPN   87 (376)
T ss_dssp             HHHHHHHHHHHHHHH--HH--EEEEEEESTTSSHHHHHHHHTT--TTS------TTS--SSSH-SCCTS-EEEE-SS-TT
T ss_pred             HHHHHHHHHHHHHHh--hcCceEEEEECCCCCCHHHHHHHHhCCCCCC------cCcCCCCCC-cCCCCCeeCCCCCCCC
Confidence            444455555554432  2467899999999999999999999865422      345666654 5788888888888889


Q ss_pred             EEEEEcCCCCCCCCCC
Q 017187          195 IYVLDTPGVLVPSIPD  210 (375)
Q Consensus       195 ~~liDTPGi~~~~~~~  210 (375)
                      +.++|.||+..+.+..
T Consensus        88 v~lWDlPG~gt~~f~~  103 (376)
T PF05049_consen   88 VTLWDLPGIGTPNFPP  103 (376)
T ss_dssp             EEEEEE--GGGSS--H
T ss_pred             CeEEeCCCCCCCCCCH
Confidence            9999999998877644

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.81  E-value=1e-08  Score=91.18  Aligned_cols=63  Identities=32%  Similarity=0.403  Sum_probs=50.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ....+++++|.+|||||||+|+|.+.          .....+++.+|+|++...+.+.  +++.++||||+....
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~----------~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~   78 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNR----------KKLARTSKTPGRTQLINFFEVN--DGFRLVDLPGYGYAK   78 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC----------CCcccccCCCCcceEEEEEEeC--CcEEEEeCCCCcccc
Confidence            56679999999999999999999971          1245677889999988766554  369999999986543

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK04213 GTP-binding protein; Provisional

Probab=98.78  E-value=1.2e-08  Score=92.09  Aligned_cols=58  Identities=31%  Similarity=0.511  Sum_probs=46.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ....+|+++|.+|||||||+|+|.+            ....++..||+|+....+...   ++.++||||+..
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~------------~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~   64 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTG------------KKVRVGKRPGVTRKPNHYDWG---DFILTDLPGFGF   64 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCceeeCceEEeec---ceEEEeCCcccc
Confidence            3457899999999999999999986            224577889999987654433   589999999743

>COG2262 HflX GTPases [General function prediction only]

Probab=98.78  E-value=8.4e-08  Score=94.10  Aligned_cols=132  Identities=19%  Similarity=0.166  Sum_probs=93.8

Q ss_pred             eEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc-cCCCCEEEEEEcCCCCChhh
Q 017187           16 MGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ-LSAKRRVIALNKKDLANPNI   89 (375)
Q Consensus        16 ~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~-~~~kp~IiVlNK~DL~~~~~   89 (375)
                      .+.++.-+=|+.+|.++..+++.+.+....+|++++|+|+.+|...+.     ..+.++ ...+|.|+|+||+|+++...
T Consensus       242 vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~  321 (411)
T COG2262         242 VLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE  321 (411)
T ss_pred             EEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence            344444466899999999999999999999999999999999833221     112332 35689999999999887654


Q ss_pred             HHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187           90 LNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus        90 ~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....+...  .+ ..+++||+++.|++.|.+.|...+..    ......+.+.+...|   ++-.|..
T Consensus       322 ~~~~~~~~--~~-~~v~iSA~~~~gl~~L~~~i~~~l~~----~~~~~~l~lp~~~~~---~~~~l~~  379 (411)
T COG2262         322 ILAELERG--SP-NPVFISAKTGEGLDLLRERIIELLSG----LRTEVTLELPYTDAG---RLSWLHD  379 (411)
T ss_pred             hhhhhhhc--CC-CeEEEEeccCcCHHHHHHHHHHHhhh----cccceEEEcCccccc---HHHHHHh
Confidence            22222111  12 58999999999999999999888765    233344556666666   5555554

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.78  E-value=7.3e-08  Score=84.21  Aligned_cols=102  Identities=22%  Similarity=0.260  Sum_probs=73.1

Q ss_pred             cccchh---HHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC-
Q 017187           26 NWFPGH---MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCK-  101 (375)
Q Consensus        26 ~wfpgH---m~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g-  101 (375)
                      -..||.   ..+..+.+...++.+|++++|+|+..+.+.....+.+...++|+++++||+|+.+.+ ...+.+++.+.+ 
T Consensus        42 iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~  120 (158)
T PRK15467         42 IDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDAD-VAATRKLLLETGF  120 (158)
T ss_pred             ccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCccc-HHHHHHHHHHcCC
Confidence            346663   123445556678999999999999877655444444444468999999999996532 334444444444 


Q ss_pred             -CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          102 -QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       102 -~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                       .+++++|++++.|++++++.+.+.+..
T Consensus       121 ~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        121 EEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence             379999999999999999999887654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.77  E-value=2.2e-08  Score=95.26  Aligned_cols=64  Identities=30%  Similarity=0.461  Sum_probs=51.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~  208 (375)
                      ....+|++||+|+||||||+|.|.+            ....++++|.||..+. ++--..+-+++++|+|||..-..
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTn------------t~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas  125 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTN------------TKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS  125 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhC------------CCccccccCceecccccceEeecCceEEEEcCcccccCcc
Confidence            4457899999999999999999997            4578889999998876 33334455799999999987433

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.75  E-value=1.7e-08  Score=90.32  Aligned_cols=63  Identities=30%  Similarity=0.399  Sum_probs=49.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ....+|+++|.+|||||||+|+|.+.          ...+.+++.+|+|+....+.+.  .++.++||||+....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~----------~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~   84 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNR----------KNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAK   84 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC----------CCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcC
Confidence            45678999999999999999999961          1246677889999988765442  469999999976543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.75  E-value=1.9e-08  Score=85.92  Aligned_cols=62  Identities=34%  Similarity=0.544  Sum_probs=47.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                      +++++++|.||+|||||+|+|.+           ...+.+++.||+|++....... ....+.++||||+....
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~   63 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAG-----------RDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE   63 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC-----------CceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc
Confidence            35799999999999999999997           2445677789999887642222 23368899999987543

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01898 Obg Obg subfamily

Probab=98.75  E-value=1.2e-08  Score=89.05  Aligned_cols=57  Identities=30%  Similarity=0.440  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      +|+++|.||||||||+|+|.+            ....++..|++|++...  +.+.....+.++||||+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~------------~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   60 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISN------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE   60 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhc------------CCccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence            589999999999999999996            22467778888877652  2233223688999999854

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.75  E-value=1.5e-08  Score=101.96  Aligned_cols=57  Identities=26%  Similarity=0.308  Sum_probs=46.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE--EEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF--KIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~--~i~~~~~~~liDTPGi~~  205 (375)
                      .|++||.||||||||||+|.+            ...++++.|+||+.+...  .+.....+.++||||+..
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~------------ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie  218 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSN------------AKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE  218 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHc------------CCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence            699999999999999999996            335678999999998743  333245699999999975

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.75  E-value=7.6e-08  Score=94.90  Aligned_cols=102  Identities=21%  Similarity=0.274  Sum_probs=73.6

Q ss_pred             eCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhhHHHH
Q 017187           20 KGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNILNKW   93 (375)
Q Consensus        20 ~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~   93 (375)
                      +.++-++.+|.++.++++.+.+.+.++|+||+|+|++.|.+....     .+... ..++|+++|+||+|+.+...... 
T Consensus       243 DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~-  321 (351)
T TIGR03156       243 DTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER-  321 (351)
T ss_pred             ecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH-
Confidence            333434667888888888888899999999999999887654321     12222 23789999999999986543322 


Q ss_pred             HHHHhhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           94 VRHFDSCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                         +.....+++++||+++.|+++|.+.+.+.
T Consensus       322 ---~~~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       322 ---LEEGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             ---HHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence               11222357899999999999999888653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK11058 GTPase HflX; Provisional

Probab=98.74  E-value=2.5e-08  Score=100.72  Aligned_cols=58  Identities=28%  Similarity=0.272  Sum_probs=45.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      ..|+++|.||||||||+|+|.+           .+ ..+++.||+|++...  +.+.....+.++||||+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~-----------~~-~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r  257 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITE-----------AR-VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIR  257 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------Cc-eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence            5899999999999999999996           22 337788999998864  3344333688999999843

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.73  E-value=1.6e-08  Score=92.69  Aligned_cols=65  Identities=29%  Similarity=0.390  Sum_probs=40.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccC-CCCCeeeeeEEEE-EccCCcEEEEEcCCCCCCCCCCh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVG-PLPGVTQDIAGFK-IAHRPSIYVLDTPGVLVPSIPDI  211 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~-~~pg~T~~~~~~~-i~~~~~~~liDTPGi~~~~~~~~  211 (375)
                      ++|+++|.+|+||||++|+|++           .....++ ...++|+..+... ...+..+.+|||||+..+...+.
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg-----------~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~   67 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILG-----------KEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE   67 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT-----------SS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc-----------ccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence            4799999999999999999997           2223332 2334566665432 23345799999999988766543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.72  E-value=1.6e-08  Score=103.18  Aligned_cols=59  Identities=25%  Similarity=0.312  Sum_probs=46.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP  206 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~  206 (375)
                      ..|++||+||||||||||+|.+            ....++++|+||+.+..-.+. .+..++++||||+...
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~------------akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg  219 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSA------------AKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG  219 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhc------------CCccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence            4699999999999999999996            335678999999987642222 2236899999999753

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.71  E-value=1.1e-08  Score=101.91  Aligned_cols=96  Identities=23%  Similarity=0.218  Sum_probs=70.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCCCChh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSIPDIE  212 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~~~~~  212 (375)
                      ..-+++++|+|||||||++|.+..            ....|.++|.||+..- +..-...-..+++|||||+...+++.+
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtr------------advevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN  234 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTR------------ADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN  234 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccc------------cccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh
Confidence            356899999999999999999985            4577889999999764 211122224689999999999888888


Q ss_pred             HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCch
Q 017187          213 TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLH  249 (375)
Q Consensus       213 ~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~  249 (375)
                      ....++++.        -..+...+||+++.++.+.+
T Consensus       235 ~IEmqsITA--------LAHLraaVLYfmDLSe~CGy  263 (620)
T KOG1490|consen  235 IIEMQIITA--------LAHLRSAVLYFMDLSEMCGY  263 (620)
T ss_pred             HHHHHHHHH--------HHHhhhhheeeeechhhhCC
Confidence            777777663        12344566777777765543

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.70  E-value=2e-08  Score=98.11  Aligned_cols=59  Identities=27%  Similarity=0.404  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~  206 (375)
                      -.|++||.||||||||+|+|.+            ....++++|+||+.+..  +.+.....+.++||||+...
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~------------~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~  218 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG  218 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhc------------CCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence            3589999999999999999996            33568899999988763  33433346899999999753

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.70  E-value=1e-07  Score=81.66  Aligned_cols=82  Identities=17%  Similarity=0.292  Sum_probs=67.9

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCC-ChhhHHHHHHHHhhCCC-cEEEEecCCccCHHHH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA-NPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKL  118 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~~g~-~vi~iSa~~~~gvk~L  118 (375)
                      ....+||+|++|.||..+.+...|.+.... .+|+|=|+||+|+. +.+.++...++++..|. +++.+|+.+++|+++|
T Consensus        59 ~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL  137 (143)
T PF10662_consen   59 VTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEEL  137 (143)
T ss_pred             HHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence            455699999999999999888888887765 58999999999998 44555666667766665 6789999999999999


Q ss_pred             HHHHH
Q 017187          119 LELVE  123 (375)
Q Consensus       119 l~~L~  123 (375)
                      .++|.
T Consensus       138 ~~~L~  142 (143)
T PF10662_consen  138 KDYLE  142 (143)
T ss_pred             HHHHh
Confidence            98875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.70  E-value=8.5e-08  Score=89.61  Aligned_cols=68  Identities=24%  Similarity=0.292  Sum_probs=46.3

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE-EccCCcEEEEEcCCCCCCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK-IAHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~-i~~~~~~~liDTPGi~~~~~~~  210 (375)
                      ...+++++++|.+|+|||||||+|++           +....++..+-.|+....+. -....++.++||||+......|
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~-----------~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D  104 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQ-----------GEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD  104 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHh-----------ccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh
Confidence            36789999999999999999999996           23344444432333222111 1122579999999999866555

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.69  E-value=1.5e-07  Score=93.74  Aligned_cols=112  Identities=21%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             cceEEeeCCCcccccchhH-HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-ccCCCCEEEEEEcCCCCChhhHH
Q 017187           14 GEMGFTKGGGNINWFPGHM-AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-QLSAKRRVIALNKKDLANPNILN   91 (375)
Q Consensus        14 g~~~~~~~~~~~~wfpgHm-~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~~~~kp~IiVlNK~DL~~~~~~~   91 (375)
                      |.-+.-.+++-++-=.-.. +-|+++.++.+++||+|++|+|++.|.+..+..+.+ ...++|+++|+||+||.++....
T Consensus       264 G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~  343 (454)
T COG0486         264 GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELE  343 (454)
T ss_pred             CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccc
Confidence            3334444444444333222 348899999999999999999999987777777766 46779999999999999865533


Q ss_pred             HHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        92 ~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..  .+ ..+...+.+|++++.|++.|.+.+.+.+..
T Consensus       344 ~~--~~-~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         344 SE--KL-ANGDAIISISAKTGEGLDALREAIKQLFGK  377 (454)
T ss_pred             hh--hc-cCCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence            32  11 234468999999999999999999887654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.69  E-value=1.4e-07  Score=85.84  Aligned_cols=103  Identities=18%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-CC-chhHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-SA-HPGLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-~~-~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~   96 (375)
                      +-.-|||- +-.+.+...+..+|++++|+|++.|.. .. ...+..+  ...+|+++|+||+|+.+.....    .+.+.
T Consensus        87 ~iDtPG~~-~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~  165 (203)
T cd01888          87 FVDCPGHE-ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKF  165 (203)
T ss_pred             EEECCChH-HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHH
Confidence            44578984 456677788889999999999987522 11 1223222  2335789999999998754332    22233


Q ss_pred             Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..   .+.+++++||+++.|+++|++++.+.+++
T Consensus       166 ~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         166 VKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            321   24578999999999999999999877654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00436 era GTP-binding protein Era

Probab=98.69  E-value=2.4e-07  Score=88.03  Aligned_cols=91  Identities=19%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-CCC-cEEEEecCCc
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDS-CKQ-DYIAINAHSR  112 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~g~-~vi~iSa~~~  112 (375)
                      +.+...+..+|++++|+|++.+.+.. ..+...  ..++|+++|+||+|+.++.......+.+.. .+. +++++||+++
T Consensus        71 ~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g  149 (270)
T TIGR00436        71 KEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTG  149 (270)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence            44567889999999999998765443 233332  356899999999999865544433333322 222 7899999999


Q ss_pred             cCHHHHHHHHHHHHhh
Q 017187          113 SSVQKLLELVELKLKE  128 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~  128 (375)
                      .|+++|++++.+.+++
T Consensus       150 ~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       150 DNTSFLAAFIEVHLPE  165 (270)
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999888765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.68  E-value=2.2e-07  Score=78.81  Aligned_cols=97  Identities=16%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             ccccchhHH---HHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhh-HHHHHHHHhhC
Q 017187           25 INWFPGHMA---AATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNI-LNKWVRHFDSC  100 (375)
Q Consensus        25 ~~wfpgHm~---k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~  100 (375)
                      +-..||...   ...+.+...++++|++|+|+|+..+.+..+..+.+.. .+|.++|+||+||.+... .+...++++..
T Consensus        39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~  117 (142)
T TIGR02528        39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETA  117 (142)
T ss_pred             eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHc
Confidence            445677631   2234444568899999999999988776654444433 469999999999975322 22223334444


Q ss_pred             CC-cEEEEecCCccCHHHHHHHH
Q 017187          101 KQ-DYIAINAHSRSSVQKLLELV  122 (375)
Q Consensus       101 g~-~vi~iSa~~~~gvk~Ll~~L  122 (375)
                      +. +++.+|++++.|++++++++
T Consensus       118 ~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528       118 GAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             CCCcEEEEecCCCCCHHHHHHHH
Confidence            44 68899999999999998876

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.68  E-value=4.7e-09  Score=99.41  Aligned_cols=103  Identities=25%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCCCChhH
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSIPDIET  213 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~~~~~~  213 (375)
                      -.+.+||+||+|||||+|+|.+            .+.+|+.++.||-.+..  .......++.+.|-|||..-.-  .+.
T Consensus       197 advGLVG~PNAGKSTLL~als~------------AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nk  262 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSR------------AKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNK  262 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhc------------cCCcccccceeeeccccceeeccccceeEeccCcccccccc--ccC
Confidence            3578999999999999999996            44689999999988762  3334444589999999987433  334


Q ss_pred             HHHHHHhhcccccccCHHHHHHHHHHHHhcCCC--Cchhhhhhcccccc
Q 017187          214 GLKLALSGSIKDSVVGEERIAQYLLAVLNTRGT--PLHWRHLNNRTEVS  260 (375)
Q Consensus       214 ~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~--~~~~~~~~~~~~~~  260 (375)
                      ++...+..        ..+-+..++++++.+..  ...|+.+.....++
T Consensus       263 GlG~~FLr--------HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL  303 (366)
T KOG1489|consen  263 GLGYKFLR--------HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL  303 (366)
T ss_pred             cccHHHHH--------HHHhhceEEEEEECCCcccCCHHHHHHHHHHHH
Confidence            55555544        33345566666665543  13354444444343

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.66  E-value=4.3e-08  Score=85.34  Aligned_cols=57  Identities=33%  Similarity=0.534  Sum_probs=42.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~  205 (375)
                      +++++|.||||||||+|+|.+            ....++..|++|+....-... ....+.++||||+..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   59 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTR------------AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD   59 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc------------CCCccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence            689999999999999999996            123455678888876632222 223689999999864

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01878 HflX HflX subfamily

Probab=98.66  E-value=3.3e-07  Score=82.95  Aligned_cols=91  Identities=23%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEE
Q 017187           32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYI  105 (375)
Q Consensus        32 m~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi  105 (375)
                      +.+....+...+..+|++++|+|++.+.+..+.     .+... ..++|+++|+||+|+.+.....   ..+...+.+++
T Consensus       107 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~  183 (204)
T cd01878         107 LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAV  183 (204)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceE
Confidence            445555555667899999999999987654331     12222 2468999999999998765433   22333455789


Q ss_pred             EEecCCccCHHHHHHHHHHH
Q 017187          106 AINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       106 ~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .+||+++.|++++.++|...
T Consensus       184 ~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         184 FISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EEEcCCCCCHHHHHHHHHhh
Confidence            99999999999999988654

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01889 SelB_euk SelB subfamily

Probab=98.65  E-value=2.1e-07  Score=83.66  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHHh-
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHFD-   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~-   98 (375)
                      -..|||. .-++.+...+..+|++++|+|++............+  ..++|+++|+||+|+.....    .+++.+.+. 
T Consensus        73 ~DtpG~~-~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~  151 (192)
T cd01889          73 VDCPGHA-SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK  151 (192)
T ss_pred             EECCCcH-HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence            4489984 445666677888999999999987543322111111  34679999999999985432    222222221 


Q ss_pred             ------hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 ------SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                            ..+.+++++|++++.|+++|++++...++
T Consensus       152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence                  13467999999999999999999987764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.65  E-value=5e-08  Score=105.02  Aligned_cols=61  Identities=28%  Similarity=0.464  Sum_probs=48.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                      ..+|+++|.||||||||+|+|.+            .+..+++.||+|.+.....+. .+..+.++||||+.+..
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg------------~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~   64 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTG------------ARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT   64 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence            46799999999999999999986            234789999999987643332 23368999999998753

>cd01878 HflX HflX subfamily

Probab=98.64  E-value=1e-07  Score=86.22  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      ....+|+++|.+|||||||+|.|.+            ....+...+++|.+...  +.+.....+.++||||+..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~  101 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTG------------ADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR  101 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhc------------chhccCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence            4457999999999999999999997            11234445566665542  3333333689999999865

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.63  E-value=1.8e-07  Score=86.69  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=70.1

Q ss_pred             ccccchhHHHHHHHHHHHhh--hcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHH----HH
Q 017187           25 INWFPGHMAAATRAIKHRLK--ISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWV----RH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~--~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~----~~   96 (375)
                      +-..||| .+-.+.+...+.  .+|++++|+|++.+.......+..+  ..++|+++|+||+|++++.......    +.
T Consensus        88 liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~  166 (224)
T cd04165          88 FIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRI  166 (224)
T ss_pred             EEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHH
Confidence            4568999 445555666564  7999999999988776554444444  4578999999999998765443322    33


Q ss_pred             HhhC--------------------------CCcEEEEecCCccCHHHHHHHHHH
Q 017187           97 FDSC--------------------------KQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        97 ~~~~--------------------------g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      +...                          ..+++.+|+.++.|++.|.+.|..
T Consensus       167 L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         167 LKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             hcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            3210                          126888999999999999888754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04171 SelB SelB subfamily

Probab=98.63  E-value=2e-07  Score=80.39  Aligned_cols=98  Identities=18%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~   98 (375)
                      -..|||. +..+.+...+..+|++++|+|++......... +...  ...+|+++|+||+|+.+...    .+++.+.++
T Consensus        56 ~DtpG~~-~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~  134 (164)
T cd04171          56 IDVPGHE-KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA  134 (164)
T ss_pred             EECCChH-HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH
Confidence            3468884 34455667788999999999998643222111 1111  23359999999999986532    234445554


Q ss_pred             h---CCCcEEEEecCCccCHHHHHHHHHH
Q 017187           99 S---CKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        99 ~---~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      .   .+.+++++|++++.|++++++.+..
T Consensus       135 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         135 GTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             hcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            3   3468999999999999999887753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01890 LepA LepA subfamily

Probab=98.62  E-value=2.8e-07  Score=81.19  Aligned_cols=100  Identities=15%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNI---LNKWVRHFDSCK  101 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g  101 (375)
                      ..|||. +....+...+..+|++|+|+|++.+.+..... +... ..++|+++|+||+|+.+...   .+++.+.+.-..
T Consensus        73 Dt~G~~-~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  151 (179)
T cd01890          73 DTPGHV-DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDP  151 (179)
T ss_pred             ECCCCh-hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCc
Confidence            368884 34455667789999999999998765433222 2222 35789999999999964321   122322221111


Q ss_pred             CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          102 QDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..++.+||+++.|++++++++.+.++
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            24889999999999999999876653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01894 EngA1 EngA1 subfamily

Probab=98.62  E-value=7.1e-07  Score=76.22  Aligned_cols=85  Identities=21%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             HHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccC
Q 017187           38 AIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSS  114 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~g  114 (375)
                      .....+..+|++++|+|++.+.+..+..+.++  ..+.|+++|+||+|+.+....   ...+.+.+. +++.+|++++.|
T Consensus        69 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~g  145 (157)
T cd01894          69 QAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRG  145 (157)
T ss_pred             HHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCC
Confidence            44567899999999999998777666555554  346899999999999876543   222223444 689999999999


Q ss_pred             HHHHHHHHHHH
Q 017187          115 VQKLLELVELK  125 (375)
Q Consensus       115 vk~Ll~~L~~~  125 (375)
                      ++++++++.+.
T Consensus       146 v~~l~~~l~~~  156 (157)
T cd01894         146 IGDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999988654

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=98.62  E-value=9.4e-08  Score=81.92  Aligned_cols=62  Identities=35%  Similarity=0.523  Sum_probs=44.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~  207 (375)
                      ..+++++|.||+|||||+|+|.+           ...+.++..+++|+....... .....+.++||||+..+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~   65 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK   65 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC-----------CceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence            45799999999999999999997           233445556667766543222 222458899999987654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=98.62  E-value=1e-07  Score=95.78  Aligned_cols=167  Identities=22%  Similarity=0.204  Sum_probs=113.1

Q ss_pred             EeeCCCcccccchhHHHHH----------HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCCh
Q 017187           18 FTKGGGNINWFPGHMAAAT----------RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANP   87 (375)
Q Consensus        18 ~~~~~~~~~wfpgHm~k~~----------~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~   87 (375)
                      .....-+.+||.-||+.+.          +...+..++--++..|+|..+...+..+.+......+..+++.||+||.+.
T Consensus        73 ~~~~~cpgc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~  152 (572)
T KOG1249|consen   73 LAAIVCPGCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPK  152 (572)
T ss_pred             cccccCCcchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccc
Confidence            4444556799999999876          334445556567778888776555666667666655567999999999976


Q ss_pred             hhHHHHHHHHh---h------C-C---C------cEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCCh
Q 017187           88 NILNKWVRHFD---S------C-K---Q------DYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGK  148 (375)
Q Consensus        88 ~~~~~~~~~~~---~------~-g---~------~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGK  148 (375)
                      +...-..+.+.   .      . +   .      .+..++++++.|+++|+-.+.....      ....+..+|..||||
T Consensus       153 d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d------f~Gdf~lvg~tnvgk  226 (572)
T KOG1249|consen  153 DSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVD------FRGDFYLVGATNVGK  226 (572)
T ss_pred             cccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheee------ccCceeeeeecccch
Confidence            54211111111   0      0 0   1      2345678889999999888876552      345689999999999


Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc
Q 017187          149 SALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA  190 (375)
Q Consensus       149 SsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~  190 (375)
                      ||++|+|++...++.....--..+++++.||||.....+.+.
T Consensus       227 s~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~  268 (572)
T KOG1249|consen  227 STLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVL  268 (572)
T ss_pred             hhHHHHHhhhccccccccceeeeeecccCCccccchhhCccc
Confidence            999999998544432222223568899999999987665544

>cd01895 EngA2 EngA2 subfamily

Probab=98.61  E-value=8e-08  Score=83.24  Aligned_cols=61  Identities=28%  Similarity=0.491  Sum_probs=45.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~  206 (375)
                      .++|+++|.||+|||||+|+|.+           .....++..|++|+......+ ..+..+.++||||+...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~   63 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLG-----------EERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK   63 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhC-----------ccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence            46899999999999999999997           233455677888887753222 23345889999999765

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.60  E-value=7e-08  Score=98.93  Aligned_cols=59  Identities=41%  Similarity=0.565  Sum_probs=47.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~  204 (375)
                      ..+|+++|.||||||||+|+|.+           ...+.+++.||+|++.....+. .+..+.++||||+.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~-----------~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~   97 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILG-----------RREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE   97 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhC-----------cCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence            45899999999999999999997           3446788999999987654332 23358899999986

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.60  E-value=8.4e-08  Score=82.35  Aligned_cols=56  Identities=41%  Similarity=0.656  Sum_probs=42.8

Q ss_pred             EEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCC
Q 017187          140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       140 vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~  208 (375)
                      ++|.+|||||||+|++.+            ....++..||+|++...  +.+.. .++.++||||+.....
T Consensus         1 l~G~~~~GKssl~~~~~~------------~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~   58 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG------------ARQKVGNWPGVTVEKKEGRFKLGG-KEIEIVDLPGTYSLSP   58 (158)
T ss_pred             CCCCCCCCHHHHHHHHhc------------CcccccCCCCcccccceEEEeeCC-eEEEEEECCCccccCC
Confidence            589999999999999986            22566778899988753  44433 4689999999976443

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.59  E-value=3.9e-07  Score=92.77  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCC-CCCCc-hhH--hhccCCCCEEEEEEcCCCCChhhHHH----HHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIP-LSSAH-PGL--QPQLSAKRRVIALNKKDLANPNILNK----WVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p-~s~~~-~~l--~~~~~~kp~IiVlNK~DL~~~~~~~~----~~~~   96 (375)
                      +-.-||| .+-++.+...+..+|++++|+||..+ ...+. +.+  .+...-+++|+|+||+|+++.+...+    +.++
T Consensus       121 ~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~  199 (460)
T PTZ00327        121 FVDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNF  199 (460)
T ss_pred             eeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence            4568999 46678888999999999999999864 22211 122  22234456889999999987554333    2233


Q ss_pred             Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..   ...+++++|+.++.|++.|++.|.+.++.
T Consensus       200 l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        200 VKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            221   34689999999999999999999876654

>cd01894 EngA1 EngA1 subfamily

Probab=98.59  E-value=6.2e-08  Score=82.84  Aligned_cols=57  Identities=35%  Similarity=0.461  Sum_probs=42.3

Q ss_pred             EEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187          139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP  206 (375)
Q Consensus       139 ~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~  206 (375)
                      +++|.+|||||||+|+|.+           .....++..|++|++....... .+..+.++||||+...
T Consensus         1 ~l~G~~~~GKssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~   58 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTG-----------RRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD   58 (157)
T ss_pred             CccCCCCCCHHHHHHHHhC-----------CcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence            4799999999999999997           2334566778899876643222 2235889999999764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.59  E-value=8.8e-08  Score=89.19  Aligned_cols=58  Identities=28%  Similarity=0.405  Sum_probs=44.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~  206 (375)
                      +++++|.||||||||+|+|.+            ....++..|++|.+...-.+ ..+..+.++||||+...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg------------~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~   60 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTN------------TKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHC------------CCccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence            689999999999999999997            23457788899977653212 23346889999998754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.56  E-value=1.4e-07  Score=85.49  Aligned_cols=67  Identities=22%  Similarity=0.372  Sum_probs=42.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~  208 (375)
                      +++++++|.+|||||||+|+|++.+...      .....++ ...+|+....+.....+++.++||||+.....
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~------~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~   67 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEE------EGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTAF   67 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCC------CCccccC-ccccccCceeeecCCCCCceEEeCCCCCcccC
Confidence            3679999999999999999999732110      0111122 12245444444333345799999999986543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.55  E-value=7.3e-08  Score=84.25  Aligned_cols=54  Identities=35%  Similarity=0.565  Sum_probs=40.7

Q ss_pred             EEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       140 vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      ++|.+|||||||+|+|.+           .. ..++..|++|++...  +.+..+..+.++||||+..
T Consensus         1 iiG~~~~GKStll~~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~   56 (176)
T cd01881           1 LVGLPNVGKSTLLNALTN-----------AK-PKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE   56 (176)
T ss_pred             CCCCCCCcHHHHHHHHhc-----------CC-ccccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence            589999999999999997           12 256777888887753  3333245789999999854

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK09866 hypothetical protein; Provisional

Probab=98.54  E-value=9.5e-07  Score=91.62  Aligned_cols=110  Identities=11%  Similarity=0.058  Sum_probs=76.1

Q ss_pred             ccceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCC--CCEEEEEEcCCCCCh-
Q 017187           13 LGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSA--KRRVIALNKKDLANP-   87 (375)
Q Consensus        13 ~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~--kp~IiVlNK~DL~~~-   87 (375)
                      .++.+|.++|+--..--.|+.+.+.   +.+..+|+|++|+|++.+.+..+..+.+.  ..+  .|+++|+||+|+.+. 
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~---eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre  305 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLN---QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN  305 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHH---HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence            4788898888733222234454444   57999999999999987666666555554  233  499999999999752 


Q ss_pred             ----hhHHHHHH-HHhhC---CCcEEEEecCCccCHHHHHHHHHHH
Q 017187           88 ----NILNKWVR-HFDSC---KQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        88 ----~~~~~~~~-~~~~~---g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                          +.+.+.+. ++.+.   ...++++||+.+.+++.|++.+...
T Consensus       306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence                23333332 22222   2369999999999999999988763

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.54  E-value=1.3e-07  Score=94.58  Aligned_cols=59  Identities=24%  Similarity=0.326  Sum_probs=44.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEc-----------------------
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIA-----------------------  190 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~-----------------------  190 (375)
                      ++|++||.||||||||+|+|.+            ..+.+++.|++|+++..  ..+.                       
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~------------~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~   69 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGT   69 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------------CcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCc
Confidence            4799999999999999999996            33577888999987763  1110                       


Q ss_pred             cCCcEEEEEcCCCCCC
Q 017187          191 HRPSIYVLDTPGVLVP  206 (375)
Q Consensus       191 ~~~~~~liDTPGi~~~  206 (375)
                      ..-++.++||||+...
T Consensus        70 ~~~~i~i~D~aGl~~g   85 (396)
T PRK09602         70 RFIPVELIDVAGLVPG   85 (396)
T ss_pred             ceeeEEEEEcCCcCCC
Confidence            0123779999999753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.53  E-value=1.4e-07  Score=101.30  Aligned_cols=59  Identities=37%  Similarity=0.530  Sum_probs=47.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV  205 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~  205 (375)
                      .+|+++|.||||||||+|+|.+           .+.+.+++.||+|++....... .+..+.++||||+..
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~-----------~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~  335 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILG-----------RREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA  335 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence            5799999999999999999997           3457788999999987754332 233688999999864

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.52  E-value=1.1e-06  Score=74.98  Aligned_cols=87  Identities=22%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187           35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS  114 (375)
Q Consensus        35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g  114 (375)
                      ..++....+.++|++++|+|++.+.+..+..+......+|+++|+||+|+.+....     .....+.+++.+|++++.|
T Consensus        70 ~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~  144 (157)
T cd04164          70 GIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEG  144 (157)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCC
Confidence            34556677889999999999998776665554444567999999999999875543     1223456899999999999


Q ss_pred             HHHHHHHHHHHH
Q 017187          115 VQKLLELVELKL  126 (375)
Q Consensus       115 vk~Ll~~L~~~l  126 (375)
                      ++++.+++...+
T Consensus       145 v~~l~~~l~~~~  156 (157)
T cd04164         145 LDELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.52  E-value=7.7e-07  Score=78.56  Aligned_cols=101  Identities=20%  Similarity=0.125  Sum_probs=70.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDS   99 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~   99 (375)
                      -..||+.. ........+..+|.+++|+|+..+.......+...  ..++|+++|+||+|+..++....    ..+.++.
T Consensus        67 iDtpG~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (189)
T cd00881          67 IDTPGHED-FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGL  145 (189)
T ss_pred             EeCCCcHH-HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcc
Confidence            34788743 33445577889999999999987765433333222  35799999999999986433222    2223322


Q ss_pred             --------------CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          100 --------------CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       100 --------------~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                                    ...+++++|++++.|++++++++...++
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         146 IGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                          2457899999999999999999877653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15494 era GTPase Era; Provisional

Probab=98.51  E-value=1.1e-06  Score=86.35  Aligned_cols=91  Identities=23%  Similarity=0.225  Sum_probs=66.9

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC--CcEEEEecCCc
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCK--QDYIAINAHSR  112 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g--~~vi~iSa~~~  112 (375)
                      +..+..+..+|++|+|+|++.++......+.+.  ..+.|.++|+||+|+.+. ......+++....  ..++++||+++
T Consensus       123 r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg  201 (339)
T PRK15494        123 RCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSG  201 (339)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCc
Confidence            445567899999999999987665543333332  235788999999999754 3344455554332  46899999999


Q ss_pred             cCHHHHHHHHHHHHhh
Q 017187          113 SSVQKLLELVELKLKE  128 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~  128 (375)
                      .|++++++++...+++
T Consensus       202 ~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        202 KNIDGLLEYITSKAKI  217 (339)
T ss_pred             cCHHHHHHHHHHhCCC
Confidence            9999999999888765

>PRK00089 era GTPase Era; Reviewed

Probab=98.51  E-value=1.5e-06  Score=83.29  Aligned_cols=92  Identities=24%  Similarity=0.274  Sum_probs=69.5

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc--CCCCEEEEEEcCCCC-ChhhHHHHHHHHhh--CCCcEEEEecCC
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL--SAKRRVIALNKKDLA-NPNILNKWVRHFDS--CKQDYIAINAHS  111 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~--~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~--~g~~vi~iSa~~  111 (375)
                      +.+...+..+|++++|+|+..+++.....+.+..  .++|+++|+||+|+. +........+.+.+  ...+++++||++
T Consensus        76 ~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~  155 (292)
T PRK00089         76 KAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK  155 (292)
T ss_pred             HHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence            4455678999999999999886665544554442  357999999999998 44555555555543  224789999999


Q ss_pred             ccCHHHHHHHHHHHHhh
Q 017187          112 RSSVQKLLELVELKLKE  128 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~  128 (375)
                      +.|++++++++.+.+++
T Consensus       156 ~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        156 GDNVDELLDVIAKYLPE  172 (292)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999888764

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.49  E-value=3.2e-07  Score=84.98  Aligned_cols=68  Identities=22%  Similarity=0.260  Sum_probs=46.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--Ec--cCCcEEEEEcCCCCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IA--HRPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~--~~~~~~liDTPGi~~~~~~  209 (375)
                      .-..|.|+|.+++|||||+|.|++..         .........+.+|+.+....  +.  ....+.++||||+..+...
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~---------~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~   76 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTL---------SGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERG   76 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCC---------CCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccC
Confidence            34578999999999999999999831         01122223366777765221  11  2346999999999987654


Q ss_pred             C
Q 017187          210 D  210 (375)
Q Consensus       210 ~  210 (375)
                      .
T Consensus        77 ~   77 (224)
T cd01851          77 E   77 (224)
T ss_pred             c
Confidence            4

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.49  E-value=1.5e-06  Score=78.72  Aligned_cols=107  Identities=14%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEE
Q 017187            8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALN   80 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlN   80 (375)
                      .||+++......+...+    +-.-|||. +-+..+...+..+|++++|+|+..+.......+...  ..++| +|+|+|
T Consensus        48 ~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviN  126 (195)
T cd01884          48 ARGITINTAHVEYETANRHYAHVDCPGHA-DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLN  126 (195)
T ss_pred             hcCccEEeeeeEecCCCeEEEEEECcCHH-HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEe
Confidence            56666665555554433    34589995 456778888999999999999987655444333333  34566 678899


Q ss_pred             cCCCCChhhH-H----HHHHHHhhCC-----CcEEEEecCCccCH
Q 017187           81 KKDLANPNIL-N----KWVRHFDSCK-----QDYIAINAHSRSSV  115 (375)
Q Consensus        81 K~DL~~~~~~-~----~~~~~~~~~g-----~~vi~iSa~~~~gv  115 (375)
                      |+|+++.+.. +    +..+++...+     .+++++|+.++.+.
T Consensus       127 K~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         127 KADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            9999753322 1    2333333333     47899999998763

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01898 Obg Obg subfamily

Probab=98.48  E-value=5.1e-07  Score=78.60  Aligned_cols=101  Identities=19%  Similarity=0.205  Sum_probs=67.2

Q ss_pred             ccccchhHH------HHHHHHHHHhhhcCeEEEEEeCCCC-CCCC--chh---Hhhc---cCCCCEEEEEEcCCCCChhh
Q 017187           25 INWFPGHMA------AATRAIKHRLKISDLVIEVRDSRIP-LSSA--HPG---LQPQ---LSAKRRVIALNKKDLANPNI   89 (375)
Q Consensus        25 ~~wfpgHm~------k~~~~i~~~l~~~DlVI~VvDar~p-~s~~--~~~---l~~~---~~~kp~IiVlNK~DL~~~~~   89 (375)
                      +-..||+..      .-.....+.+..+|++++|+|++.+ .+..  ...   +.+.   ...+|+++|+||+|+.++..
T Consensus        52 l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~  131 (170)
T cd01898          52 VADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE  131 (170)
T ss_pred             EEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence            345688631      1123344556789999999999876 2211  111   2111   13689999999999987666


Q ss_pred             HHHHHHHHhhC--CCcEEEEecCCccCHHHHHHHHHHH
Q 017187           90 LNKWVRHFDSC--KQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        90 ~~~~~~~~~~~--g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      ...+.+.+...  +.+++.+|++++.|++++++++.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         132 LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            55555444322  5678999999999999999888654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04171 SelB SelB subfamily

Probab=98.48  E-value=2.7e-07  Score=79.54  Aligned_cols=58  Identities=24%  Similarity=0.390  Sum_probs=38.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGV  203 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi  203 (375)
                      .++++|.||||||||+|+|.+..         .........+++|.+...  +.+.....+.++||||.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~---------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~   61 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE---------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH   61 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc---------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh
Confidence            68999999999999999998610         011111234567766543  33332346899999996

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.46  E-value=3.4e-07  Score=79.46  Aligned_cols=56  Identities=36%  Similarity=0.628  Sum_probs=39.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc----CCcEEEEEcCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH----RPSIYVLDTPGVL  204 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~----~~~~~liDTPGi~  204 (375)
                      .++++|.+|||||||+|+|.+           .. ......+++|++.....+..    ...+.++||||..
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~   61 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRK-----------TN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE   61 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHh-----------cc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence            489999999999999999986           11 22234467777665333322    3468999999974

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04163 Era Era subfamily

Probab=98.46  E-value=3.4e-06  Score=72.10  Aligned_cols=88  Identities=25%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             HHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC-ChhhHHHHHHHHhhCC--CcEEEEecCCc
Q 017187           38 AIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA-NPNILNKWVRHFDSCK--QDYIAINAHSR  112 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~~g--~~vi~iSa~~~  112 (375)
                      .....+..+|++++|+|+..+.+.....+.+.  ..+.|.++|+||+|+. .......+.+.+....  .+++.+|++++
T Consensus        75 ~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  154 (168)
T cd04163          75 AAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG  154 (168)
T ss_pred             HHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence            44567899999999999998865555455444  2358999999999998 4555666666665433  57899999999


Q ss_pred             cCHHHHHHHHHHH
Q 017187          113 SSVQKLLELVELK  125 (375)
Q Consensus       113 ~gvk~Ll~~L~~~  125 (375)
                      .+++++.+.+.+.
T Consensus       155 ~~~~~l~~~l~~~  167 (168)
T cd04163         155 ENVDELLEEIVKY  167 (168)
T ss_pred             CChHHHHHHHHhh
Confidence            9999999988654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=98.46  E-value=1.6e-06  Score=74.93  Aligned_cols=87  Identities=18%  Similarity=0.240  Sum_probs=64.1

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh--hhHHHHHHHHhh-C----CCcEEEEec
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP--NILNKWVRHFDS-C----KQDYIAINA  109 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~--~~~~~~~~~~~~-~----g~~vi~iSa  109 (375)
                      ....+..+|++++|+|+..+.+.....+...  ..++|+++|+||+|+.+.  .....+.+.+.+ .    ..+++++|+
T Consensus        78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            4456789999999999998877655444443  357899999999999876  334444444432 1    247899999


Q ss_pred             CCccCHHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVELK  125 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~  125 (375)
                      +++.|++++.+.+.+.
T Consensus       158 ~~~~~i~~~~~~l~~~  173 (174)
T cd01895         158 LTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cCCCCHHHHHHHHHHh
Confidence            9999999999887653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.45  E-value=9.2e-07  Score=90.49  Aligned_cols=104  Identities=19%  Similarity=0.269  Sum_probs=70.4

Q ss_pred             ccccchh-----HHHHH-HHHHHHhhhcCeEEEEEeCCC------CCCCCc---hhHhhc------------cCCCCEEE
Q 017187           25 INWFPGH-----MAAAT-RAIKHRLKISDLVIEVRDSRI------PLSSAH---PGLQPQ------------LSAKRRVI   77 (375)
Q Consensus        25 ~~wfpgH-----m~k~~-~~i~~~l~~~DlVI~VvDar~------p~s~~~---~~l~~~------------~~~kp~Ii   77 (375)
                      +-..||-     ..+++ .+..+.+++||+||+|+|+..      |+....   .+|..+            +..+|+|+
T Consensus       210 laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IV  289 (500)
T PRK12296        210 VADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLV  289 (500)
T ss_pred             EEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEE
Confidence            3457773     23333 345567899999999999964      222211   122222            23689999


Q ss_pred             EEEcCCCCChhhHHH-HHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           78 ALNKKDLANPNILNK-WVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        78 VlNK~DL~~~~~~~~-~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      |+||+|+.+.....+ +...+.+.+.+++++||+++.|+++|+.++.+.+..
T Consensus       290 VlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        290 VLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             EEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999975543333 333454557789999999999999999999887755

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.45  E-value=3e-07  Score=79.07  Aligned_cols=57  Identities=35%  Similarity=0.473  Sum_probs=44.0

Q ss_pred             EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187          138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~  206 (375)
                      |+++|.+|+|||||+|+|.+.          .....++..+|+|+....+.+..  .++++||||+...
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~----------~~~~~~~~~~~~t~~~~~~~~~~--~~~~~D~~g~~~~   58 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNR----------KKLARTSKTPGKTQLINFFNVND--KFRLVDLPGYGYA   58 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC----------CceeeecCCCCcceeEEEEEccC--eEEEecCCCcccc
Confidence            789999999999999999941          23355667788888776654443  6999999998664

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.45  E-value=1.4e-06  Score=91.98  Aligned_cols=103  Identities=13%  Similarity=0.046  Sum_probs=74.1

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCChhhHH----HHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLANPNILN----KWVRHF   97 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~~~~~~----~~~~~~   97 (375)
                      +-.-||| .+..+.+...+..+|++++|+|++.+..........+  ..+.| +|+|+||+|+++++...    ++.+++
T Consensus        55 ~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l  133 (614)
T PRK10512         55 FIDVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL  133 (614)
T ss_pred             EEECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH
Confidence            5579999 4566788888999999999999987655433322222  23456 57999999998754432    233344


Q ss_pred             hhCC---CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCK---QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g---~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ...+   .+++++|++++.|++.|++.|......
T Consensus       134 ~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        134 REYGFAEAKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             HhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            3333   478999999999999999999876544

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.45  E-value=2.5e-07  Score=89.91  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=43.0

Q ss_pred             EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEE---------------------c--cC
Q 017187          138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKI---------------------A--HR  192 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i---------------------~--~~  192 (375)
                      ++++|.||||||||+|+|.+            ..+.+++.|++|+++..  ...                     .  ..
T Consensus         1 i~ivG~pnvGKStLfn~lt~------------~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~   68 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY   68 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhC------------CCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCc
Confidence            47999999999999999996            33678899999987652  111                     0  11


Q ss_pred             CcEEEEEcCCCCCC
Q 017187          193 PSIYVLDTPGVLVP  206 (375)
Q Consensus       193 ~~~~liDTPGi~~~  206 (375)
                      -++.++||||+...
T Consensus        69 v~i~l~D~aGlv~g   82 (318)
T cd01899          69 VPVELIDVAGLVPG   82 (318)
T ss_pred             ceEEEEECCCCCCC
Confidence            24889999999753

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.45  E-value=5.2e-07  Score=76.17  Aligned_cols=57  Identities=32%  Similarity=0.447  Sum_probs=42.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE--EEccC-CcEEEEEcCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF--KIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~--~i~~~-~~~~liDTPGi~  204 (375)
                      ++|+++|.+|+|||||+|+|.+           .. ......|++|++....  ..... ..+.++||||..
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   61 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLG-----------NK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE   61 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhC-----------CC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence            5899999999999999999996           22 5556667888877653  23221 247789999943

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.44  E-value=2.2e-07  Score=89.21  Aligned_cols=59  Identities=27%  Similarity=0.410  Sum_probs=49.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccCCcEEEEEcCCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      .|.+||+||+|||||||++..            .+.+++++|.||..+.  .+++.....+++.|-||+.+-.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~------------AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA  221 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSA------------AKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA  221 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhh------------cCCcccCCccccccCcccEEEecCCCcEEEecCccccccc
Confidence            478999999999999999996            5688999999999886  3555556679999999998743

>PRK11058 GTPase HflX; Provisional

Probab=98.41  E-value=2.7e-06  Score=86.04  Aligned_cols=111  Identities=15%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             ceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChh
Q 017187           15 EMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPN   88 (375)
Q Consensus        15 ~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~   88 (375)
                      ...+.+.++-++-.|.++..+++.+.+.+.++|++|+|+|+..|.+..+.     .+... ..++|+++|+||+|+.+..
T Consensus       246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~  325 (426)
T PRK11058        246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF  325 (426)
T ss_pred             eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence            33444444444555777777788888889999999999999887543321     12222 2368999999999997542


Q ss_pred             hHHHHHHHHhhCCCc-EEEEecCCccCHHHHHHHHHHHHhh
Q 017187           89 ILNKWVRHFDSCKQD-YIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        89 ~~~~~~~~~~~~g~~-vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .. . .... ..+.+ ++.+||+++.|+++|++++.+.+..
T Consensus       326 ~~-~-~~~~-~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        326 EP-R-IDRD-EENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             hH-H-HHHH-hcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            21 1 1111 22333 4789999999999999999887743

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.41  E-value=3.3e-06  Score=85.06  Aligned_cols=116  Identities=19%  Similarity=0.167  Sum_probs=76.5

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCc-hhHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-SSAH-PGLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-s~~~-~~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~   96 (375)
                      +-..|||. +-.+.+...+..+|++++|+|++.+. .... ..+..+  ...+++++|+||+|+++.+...    +..++
T Consensus        84 liDtPGh~-~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~  162 (406)
T TIGR03680        84 FVDAPGHE-TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF  162 (406)
T ss_pred             EEECCCHH-HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence            45589994 45677778888999999999999764 2221 122222  3346789999999998754322    22222


Q ss_pred             Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEE
Q 017187           97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVV  141 (375)
Q Consensus        97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vv  141 (375)
                      +..   .+.+++++|++++.|++.|+++|...++.. .....+++..|.
T Consensus       163 l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~  211 (406)
T TIGR03680       163 VKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVA  211 (406)
T ss_pred             hhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEE
Confidence            222   145789999999999999999998866532 122344444444

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.39  E-value=2.9e-06  Score=85.56  Aligned_cols=116  Identities=18%  Similarity=0.161  Sum_probs=75.9

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCch-hHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-SSAHP-GLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~   96 (375)
                      +-.-|||. +-...+...+..+|++++|+|++.+. ..... .+..+  ...+|+++|+||+|+.+.+...    ++..+
T Consensus        89 liDtPG~~-~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~  167 (411)
T PRK04000         89 FVDAPGHE-TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF  167 (411)
T ss_pred             EEECCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence            44579995 45566777788899999999999765 22211 22222  2335789999999998754322    22233


Q ss_pred             Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEE
Q 017187           97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVV  141 (375)
Q Consensus        97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vv  141 (375)
                      +..   .+.+++++|++++.|++.|++.|...++.. .....+++..|.
T Consensus       168 l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~  216 (411)
T PRK04000        168 VKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVA  216 (411)
T ss_pred             hccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEE
Confidence            321   245789999999999999999998876542 122344454444

>cd01861 Rab6 Rab6 subfamily

Probab=98.39  E-value=8.1e-07  Score=76.62  Aligned_cols=55  Identities=16%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGV  203 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi  203 (375)
                      +++++|.||||||||+|++++            .....+..|++|.+...  +.+... -.+.++||||-
T Consensus         2 ki~liG~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~   59 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMY------------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ   59 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHc------------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence            689999999999999999996            11222445666665432  222221 13779999994

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.39  E-value=1.9e-06  Score=87.02  Aligned_cols=92  Identities=18%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC-ChhhHHHHHHHHhh-----CCCcEEEEe
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA-NPNILNKWVRHFDS-----CKQDYIAIN  108 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~-----~g~~vi~iS  108 (375)
                      .+....++.+|++|+|+|+..+.+..+..+.+.  ..++|+++|+||+||+ +.+..+...+.+++     ...+++++|
T Consensus       246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S  325 (429)
T TIGR03594       246 LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS  325 (429)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence            344567899999999999998877665554444  3579999999999998 44333343333321     135789999


Q ss_pred             cCCccCHHHHHHHHHHHHhh
Q 017187          109 AHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l~~  128 (375)
                      |+++.|++++++++.+....
T Consensus       326 A~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       326 ALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999998877654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.38  E-value=1.1e-06  Score=85.91  Aligned_cols=102  Identities=20%  Similarity=0.264  Sum_probs=69.5

Q ss_pred             ccccchhHH-----HHH-HHHHHHhhhcCeEEEEEeCCCCC-----CCCc---hhHhhc---cCCCCEEEEEEcCCCCCh
Q 017187           25 INWFPGHMA-----AAT-RAIKHRLKISDLVIEVRDSRIPL-----SSAH---PGLQPQ---LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        25 ~~wfpgHm~-----k~~-~~i~~~l~~~DlVI~VvDar~p~-----s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~   87 (375)
                      +-..||...     +++ .+..+.++++|++|+|+|+..+-     ....   .++..+   ...+|+++|+||+|+.+.
T Consensus       209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence            345777632     222 34456688999999999987541     1111   112222   246899999999999876


Q ss_pred             hhHHHHHHHHh-hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           88 NILNKWVRHFD-SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        88 ~~~~~~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ...+++.+.+. ..+.+++++||+++.|++++++++.+.+
T Consensus       289 ~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       289 EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            55555555554 3356899999999999999999987654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00880 Era_like Era (E

Probab=98.38  E-value=4e-06  Score=70.65  Aligned_cols=89  Identities=19%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhhHHHHHH---H--HhhCCCcEEEEec
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNILNKWVR---H--FDSCKQDYIAINA  109 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~---~--~~~~g~~vi~iSa  109 (375)
                      ..+...+..+|++++|+|+..+....... +... ..+.|.++|+||+|+........+.+   .  ....+.+++.+|+
T Consensus        67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  146 (163)
T cd00880          67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSA  146 (163)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEee
Confidence            45567889999999999999876665443 2222 46789999999999998766555432   1  1123557899999


Q ss_pred             CCccCHHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVELK  125 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~  125 (375)
                      .++.|++++++++.+.
T Consensus       147 ~~~~~v~~l~~~l~~~  162 (163)
T cd00880         147 LTGEGIDELREALIEA  162 (163)
T ss_pred             eccCCHHHHHHHHHhh
Confidence            9999999999988654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.38  E-value=1.7e-06  Score=84.78  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc---cCCCCEEEEEEcCCCCChhhHH-HHHH-HHhhCCCcEEE
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ---LSAKRRVIALNKKDLANPNILN-KWVR-HFDSCKQDYIA  106 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~---~~~kp~IiVlNK~DL~~~~~~~-~~~~-~~~~~g~~vi~  106 (375)
                      .+..+.++++|++|+|+|+..+.+..+     .++..+   +.++|+++|+||+|+.+..... ...+ ++...+.++++
T Consensus       228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~  307 (335)
T PRK12299        228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFL  307 (335)
T ss_pred             HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEE
Confidence            355567889999999999975432111     112222   2468999999999998654322 2222 23344568999


Q ss_pred             EecCCccCHHHHHHHHHHHHhh
Q 017187          107 INAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +||+++.|++++++++.+.+.+
T Consensus       308 iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        308 ISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEcCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887754

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.38  E-value=2.4e-06  Score=89.76  Aligned_cols=103  Identities=14%  Similarity=0.081  Sum_probs=72.4

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCChhhHH----HHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLANPNILN----KWVRHF   97 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~~~~~~----~~~~~~   97 (375)
                      +-..||| .+..+.+...+.++|++++|+|++.+..........+  ..+.| +++|+||+|+++.+..+    +..+++
T Consensus        54 ~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l  132 (581)
T TIGR00475        54 FIDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL  132 (581)
T ss_pred             EEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            4568999 4566777888899999999999987543222111111  34567 99999999998765332    222223


Q ss_pred             hhC----CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSC----KQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~----g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ...    +.+++++|++++.|++++.+.+...+..
T Consensus       133 ~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       133 NSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             HHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            222    4679999999999999999988776654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.37  E-value=1e-06  Score=76.52  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=63.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~   99 (375)
                      ..|||.. ........++.+|++++|+|+..+.+-.  ...+..+     ..+.|+++|+||+|+.+.....+..++++.
T Consensus        56 Dt~G~~~-~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~  134 (167)
T cd04160          56 DLGGQES-LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQD  134 (167)
T ss_pred             ECCCChh-hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcc
Confidence            4788843 2233456689999999999997653211  0112222     246899999999999765433333333321


Q ss_pred             -------CCCcEEEEecCCccCHHHHHHHHH
Q 017187          100 -------CKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus       100 -------~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                             .+.+++.+||+++.|+++++++|.
T Consensus       135 ~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         135 KAEEIGRRDCLVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             ccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence                   234789999999999999998874

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.35  E-value=2.3e-06  Score=78.50  Aligned_cols=87  Identities=25%  Similarity=0.382  Sum_probs=53.5

Q ss_pred             cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEcc
Q 017187          113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAH  191 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~  191 (375)
                      -|++.+++.+....-.   ....++|||||.+|.|||||+|+|+........    ......-+.|.||.-.. ..-+..
T Consensus        27 vGidtI~~Qm~~k~mk---~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s----~~~~~~~p~pkT~eik~~thvieE   99 (336)
T KOG1547|consen   27 VGIDTIIEQMRKKTMK---TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSS----SSDNSAEPIPKTTEIKSITHVIEE   99 (336)
T ss_pred             ccHHHHHHHHHHHHHh---ccCceEEEEEecCCCCchhhHHHHHHHHHhhcc----CCCcccCcccceEEEEeeeeeeee
Confidence            4888888888766533   467899999999999999999999972111000    00111114444443221 111222


Q ss_pred             CC---cEEEEEcCCCCCC
Q 017187          192 RP---SIYVLDTPGVLVP  206 (375)
Q Consensus       192 ~~---~~~liDTPGi~~~  206 (375)
                      ..   ++.++||||+...
T Consensus       100 ~gVklkltviDTPGfGDq  117 (336)
T KOG1547|consen  100 KGVKLKLTVIDTPGFGDQ  117 (336)
T ss_pred             cceEEEEEEecCCCcccc
Confidence            11   3789999999864

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.33  E-value=3.4e-06  Score=85.46  Aligned_cols=91  Identities=19%  Similarity=0.254  Sum_probs=69.3

Q ss_pred             HHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-----CCCcEEEEecC
Q 017187           38 AIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDS-----CKQDYIAINAH  110 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~g~~vi~iSa~  110 (375)
                      +..+.++.+|++|+|+|+..+.+..+..+...  ..++|+++|+||+|+.+.+..+++.+.+..     ...+++++||+
T Consensus       248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~  327 (435)
T PRK00093        248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL  327 (435)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence            44567899999999999998877766555554  357999999999999865544444444321     13578999999


Q ss_pred             CccCHHHHHHHHHHHHhh
Q 017187          111 SRSSVQKLLELVELKLKE  128 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.|++++++.+.+....
T Consensus       328 ~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        328 TGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999998776654

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.33  E-value=3.7e-06  Score=85.72  Aligned_cols=87  Identities=23%  Similarity=0.302  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187           35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS  114 (375)
Q Consensus        35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g  114 (375)
                      ++++..+.+.++|++++|+|+..+.+..+..+.....++|+++|+||+|+.+.....      ...+.+++.+|++++.|
T Consensus       284 gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        284 GIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCC
Confidence            456677889999999999999887654432222224578999999999997654322      12345789999999999


Q ss_pred             HHHHHHHHHHHHh
Q 017187          115 VQKLLELVELKLK  127 (375)
Q Consensus       115 vk~Ll~~L~~~l~  127 (375)
                      +++|++++.+.+.
T Consensus       358 I~~L~~~L~~~l~  370 (449)
T PRK05291        358 IDELREAIKELAF  370 (449)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987764

>PRK12736 elongation factor Tu; Reviewed

Probab=98.33  E-value=9.2e-06  Score=81.49  Aligned_cols=134  Identities=15%  Similarity=0.063  Sum_probs=85.7

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEE
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIAL   79 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVl   79 (375)
                      ..||+++......+...+    +-.-|||. +.+..+...+..+|++++|+|++.+..........+  ..++| .|+++
T Consensus        57 ~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~Ivvi  135 (394)
T PRK12736         57 KERGITINTAHVEYETEKRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFL  135 (394)
T ss_pred             HhcCccEEEEeeEecCCCcEEEEEECCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEE
Confidence            467777666655554433    34689985 556777788899999999999987655443333333  34677 56889


Q ss_pred             EcCCCCChhhHH-----HHHHHHhhCC-----CcEEEEecCCcc--------CHHHHHHHHHHHHhhh-hccCCceEEEE
Q 017187           80 NKKDLANPNILN-----KWVRHFDSCK-----QDYIAINAHSRS--------SVQKLLELVELKLKEV-ISREPTLLVMV  140 (375)
Q Consensus        80 NK~DL~~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~~~--------gvk~Ll~~L~~~l~~~-~~~~~~~~v~v  140 (375)
                      ||+|+++.+...     +..+++...+     .+++++|+.++.        ++..|++.+.+.++.. .....++++.|
T Consensus       136 NK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I  215 (394)
T PRK12736        136 NKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPV  215 (394)
T ss_pred             EecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence            999998543221     2333333333     478999999872        5788888888776532 22234455444


Q ss_pred             E
Q 017187          141 V  141 (375)
Q Consensus       141 v  141 (375)
                      -
T Consensus       216 ~  216 (394)
T PRK12736        216 E  216 (394)
T ss_pred             E
Confidence            3

>cd04154 Arl2 Arl2 subfamily

Probab=98.33  E-value=1.6e-06  Score=76.34  Aligned_cols=96  Identities=17%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      .+||+-. ........++.+|++++|+|+..+.+-.+  ..+..+     ..+.|+++|+||+|+......++..+.+. 
T Consensus        64 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  142 (173)
T cd04154          64 DVGGQKT-LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALEL  142 (173)
T ss_pred             ECCCCHH-HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCc
Confidence            4788742 12233456889999999999987532111  122222     25689999999999975433333333332 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                          ....+++.+||+++.|++++++++.
T Consensus       143 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         143 DKISSHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             cccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence                2345789999999999999988874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00880 Era_like Era (E

Probab=98.31  E-value=1.9e-06  Score=72.74  Aligned_cols=60  Identities=30%  Similarity=0.462  Sum_probs=43.9

Q ss_pred             EEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc--CCcEEEEEcCCCCCCCCCC
Q 017187          140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH--RPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       140 vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~--~~~~~liDTPGi~~~~~~~  210 (375)
                      ++|.+|+|||||+|+|.+           ......+..+++|..........  ...+.++||||+.......
T Consensus         1 i~G~~gsGKstl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~   62 (163)
T cd00880           1 LFGRTNAGKSSLLNALLG-----------QEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG   62 (163)
T ss_pred             CcCCCCCCHHHHHHHHhC-----------ccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch
Confidence            589999999999999997           23344666777887776543332  4579999999998765433

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04124 RabL2 RabL2 subfamily

Probab=98.31  E-value=3.3e-06  Score=73.38  Aligned_cols=99  Identities=13%  Similarity=-0.002  Sum_probs=66.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCK  101 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g  101 (375)
                      ..||+..- .......++.+|++|+|+|+..+.+..+  ..+..+   ..+.|+++|+||+|+.+.. ..+..++.+..+
T Consensus        55 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~  132 (161)
T cd04124          55 DTAGQERF-QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHN  132 (161)
T ss_pred             eCCCchhh-hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcC
Confidence            36887432 2233456899999999999876544221  112222   2468999999999996432 223333333445


Q ss_pred             CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          102 QDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+++.+|++++.|++++++.+.+.+.
T Consensus       133 ~~~~~~Sa~~~~gv~~l~~~l~~~~~  158 (161)
T cd04124         133 LPLYYVSAADGTNVVKLFQDAIKLAV  158 (161)
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999998876553

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.31  E-value=4e-06  Score=75.38  Aligned_cols=91  Identities=13%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-c-cCCCCEEEEEEcCCCCChh---hHHHHHHHHh--
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-Q-LSAKRRVIALNKKDLANPN---ILNKWVRHFD--   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~-~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~--   98 (375)
                      -.-|||.. -...+...++.+|++++|+|+..........+.. . ..++|+++|+||+|+....   ..+++.+++.  
T Consensus        70 ~DtpG~~~-~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  148 (194)
T cd01891          70 VDTPGHAD-FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIEL  148 (194)
T ss_pred             EECCCcHH-HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            44788843 3345667789999999999998643222122222 1 3578999999999997432   2334445442  


Q ss_pred             -----hCCCcEEEEecCCccCHHH
Q 017187           99 -----SCKQDYIAINAHSRSSVQK  117 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~  117 (375)
                           +.+.+++++|++++.|+.+
T Consensus       149 ~~~~~~~~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         149 GATEEQLDFPVLYASAKNGWASLN  172 (194)
T ss_pred             CCccccCccCEEEeehhccccccc
Confidence                 2256789999999866533

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04157 Arl6 Arl6 subfamily

Probab=98.30  E-value=2.5e-06  Score=73.47  Aligned_cols=97  Identities=18%  Similarity=0.036  Sum_probs=63.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-------cCCCCEEEEEEcCCCCChhhHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-------LSAKRRVIALNKKDLANPNILNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~~~   96 (375)
                      -..||+.. ........++.+|++|+|+|++.+.+...  ..+..+       ..++|+++|+||+|+.+.....++.+.
T Consensus        50 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~  128 (162)
T cd04157          50 FDMSGQGK-YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQL  128 (162)
T ss_pred             EECCCCHh-hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHH
Confidence            44788853 22233456899999999999987643211  122211       136899999999999764333333333


Q ss_pred             Hh-----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           97 FD-----SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        97 ~~-----~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                      +.     .....++.+||+++.|+++++++|.
T Consensus       129 l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         129 LGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             hCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            31     1122478899999999999999874

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01850 CDC_Septin CDC/Septin

Probab=98.30  E-value=1.9e-06  Score=82.35  Aligned_cols=24  Identities=38%  Similarity=0.611  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++++|.+|+|||||+|+|++
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~   26 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFN   26 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHc
Confidence            457899999999999999999997

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.1e-06  Score=88.80  Aligned_cols=104  Identities=19%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhccCCCCEEEEEEcCCCCCh--hhHH-HHHHHHhh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQLSAKRRVIALNKKDLANP--NILN-KWVRHFDS   99 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~~~~kp~IiVlNK~DL~~~--~~~~-~~~~~~~~   99 (375)
                      .-.=|||..-+- +..+.+..||-+|+||||......+-.  ....+..+-.+|.|+||+|+...  +... ...+.|..
T Consensus       129 LIDTPGHvDFs~-EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~  207 (650)
T KOG0462|consen  129 LIDTPGHVDFSG-EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI  207 (650)
T ss_pred             eecCCCcccccc-eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence            345699976554 466789999999999999876544311  11122467789999999999643  3333 34455545


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLKEV  129 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~  129 (375)
                      .+.+++.+|+++|.++.++++++.+.++..
T Consensus       208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPP  237 (650)
T ss_pred             CccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence            566899999999999999999999888754

>cd00154 Rab Rab family

Probab=98.29  E-value=1.4e-06  Score=73.94  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=36.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ++|+++|.||||||||+|.|.+.           +... ..+..|.+.....+..... -.+.++||||..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDG-----------KFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE   60 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhC-----------cCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence            47999999999999999999861           1111 1223334443333333221 247899999973

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.29  E-value=2.3e-06  Score=76.42  Aligned_cols=99  Identities=13%  Similarity=0.015  Sum_probs=65.1

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..||+.. ........++++|.+|+|+|+..+.+-  ....+.++     ..++|+++|+||+|+......++..+.+.
T Consensus        66 ~D~~G~~~-~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~  144 (184)
T smart00178       66 FDLGGHQQ-ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALG  144 (184)
T ss_pred             EECCCCHH-HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcC
Confidence            34688743 233345678999999999999875321  11122222     25789999999999864322333333431


Q ss_pred             --h----------CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 --S----------CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 --~----------~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                        +          ....++.+||+++.|+++++++|.+.
T Consensus       145 l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      145 LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             CCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence              1          12258899999999999999998653

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04149 Arf6 Arf6 subfamily

Probab=98.29  E-value=2.5e-06  Score=75.03  Aligned_cols=96  Identities=15%  Similarity=0.010  Sum_probs=61.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      ..||+... .......++++|++|+|+|+..+.+-.  ...+.+.     ..+.|+++|.||+|+......++..+++. 
T Consensus        59 Dt~G~~~~-~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~  137 (168)
T cd04149          59 DVGGQDKI-RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL  137 (168)
T ss_pred             ECCCCHHH-HHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC
Confidence            36888432 222345679999999999998763321  1122222     24589999999999964322223333321 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                          .....++.+||+++.|+++++++|.
T Consensus       138 ~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         138 TRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             CccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence                1223578899999999999998875

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01863 Rab18 Rab18 subfamily

Probab=98.27  E-value=1.8e-06  Score=74.50  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=39.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ++++++|.+|||||||+|+|.+.          .......+.+|.+.....+.+... -.+.++||||..
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDD----------TFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC----------CCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence            47999999999999999999961          111234455555554444434321 147889999964

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.27  E-value=7.9e-06  Score=86.08  Aligned_cols=124  Identities=14%  Similarity=0.132  Sum_probs=79.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhC
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNI---LNKWVRHFDSC  100 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~  100 (375)
                      -.-|||.. ....+...++.+|.+|+|+|++.+....... +... ..+.|+++|+||+|+.....   .+++.+.+.-.
T Consensus        79 iDTPGh~d-F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~  157 (600)
T PRK05433         79 IDTPGHVD-FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID  157 (600)
T ss_pred             EECCCcHH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC
Confidence            34699965 4455778899999999999998765543221 1111 35789999999999964322   12232322111


Q ss_pred             CCcEEEEecCCccCHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChHH
Q 017187          101 KQDYIAINAHSRSSVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKSA  150 (375)
Q Consensus       101 g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKSs  150 (375)
                      ..+++++||+++.|+++|++++.+.++... ....+++..++-   -|++|+-+
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~  211 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVV  211 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEE
Confidence            124899999999999999999988877542 223344444432   24555543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.27  E-value=9.7e-06  Score=81.64  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=68.2

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEE
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIAL   79 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVl   79 (375)
                      ..||+++..........+    +-.-|||. +-.+.+...+..+|++|+|+|+..+..........+   ...+++++|+
T Consensus        62 ~~rgiTid~~~~~~~~~~~~~~liDtPGh~-~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivvi  140 (406)
T TIGR02034        62 REQGITIDVAYRYFSTDKRKFIVADTPGHE-QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAV  140 (406)
T ss_pred             hcCCcCeEeeeEEEccCCeEEEEEeCCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEE
Confidence            345554443333333322    33469995 455667788999999999999988765544322222   3445678899


Q ss_pred             EcCCCCChh--hHHH----HHHHHhhCC---CcEEEEecCCccCHHH
Q 017187           80 NKKDLANPN--ILNK----WVRHFDSCK---QDYIAINAHSRSSVQK  117 (375)
Q Consensus        80 NK~DL~~~~--~~~~----~~~~~~~~g---~~vi~iSa~~~~gvk~  117 (375)
                      ||+|+.+..  ..+.    +.++++..+   .+++++|+.++.|+.+
T Consensus       141 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       141 NKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             EecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            999997532  2222    222222223   3689999999988764

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.27  E-value=2.1e-06  Score=74.14  Aligned_cols=58  Identities=17%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGV  203 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi  203 (375)
                      ++++++|.+|||||||+|+|.+.          .......+..|.+.....+.+.... .+.++||||-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~   60 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKN----------EFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ   60 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence            58999999999999999999971          1111233444443322233333221 3678999995

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.26  E-value=6.7e-06  Score=71.44  Aligned_cols=82  Identities=15%  Similarity=0.106  Sum_probs=56.2

Q ss_pred             hcCeEEEEEeCCCCCCCC-ch---hHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHH
Q 017187           45 ISDLVIEVRDSRIPLSSA-HP---GLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK  117 (375)
Q Consensus        45 ~~DlVI~VvDar~p~s~~-~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~  117 (375)
                      .+|++|+|+|+..+.+.. ..   .+...   ..+.|+++|+||+|+.+........++....+.+++.+||+++.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            369999999998654321 11   11122   237899999999999865544332233323356789999999999999


Q ss_pred             HHHHHHHHH
Q 017187          118 LLELVELKL  126 (375)
Q Consensus       118 Ll~~L~~~l  126 (375)
                      +++++.+.+
T Consensus       159 l~~~l~~~~  167 (168)
T cd01897         159 VKNKACELL  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999887653

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.25  E-value=2.3e-06  Score=89.93  Aligned_cols=54  Identities=39%  Similarity=0.608  Sum_probs=42.4

Q ss_pred             cCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187          142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       142 G~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                      |.||||||||+|+|.+            ....+++.||+|.+.....+. ++..+.++||||.....
T Consensus         1 G~pNvGKSSL~N~Ltg------------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~   55 (591)
T TIGR00437         1 GNPNVGKSTLFNALTG------------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT   55 (591)
T ss_pred             CCCCCCHHHHHHHHhC------------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC
Confidence            8999999999999996            335788999999987643222 23468899999997654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.25  E-value=1.4e-06  Score=85.66  Aligned_cols=63  Identities=27%  Similarity=0.316  Sum_probs=44.5

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~  206 (375)
                      ...-..|.+||++|+|||||+|+|.+.            ...+.+....|-+...  +.+..+..+.+-||-||...
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~------------~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~  253 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGA------------DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD  253 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhcc------------CeeccccccccccCceeEEEeCCCceEEEecCccCccc
Confidence            345678999999999999999999962            2333333444444432  33555567999999999863

>cd04155 Arl3 Arl3 subfamily

Probab=98.25  E-value=2.3e-06  Score=74.81  Aligned_cols=58  Identities=16%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ....+++++|.+|||||||+|.|.+.           ......+..|.+...  +... +..+.++||||..
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~-----------~~~~~~~t~g~~~~~--i~~~-~~~~~~~D~~G~~   69 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASE-----------DISHITPTQGFNIKT--VQSD-GFKLNVWDIGGQR   69 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcC-----------CCcccCCCCCcceEE--EEEC-CEEEEEEECCCCH
Confidence            45789999999999999999999971           222333444543322  2222 2357889999964

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.24  E-value=9.6e-06  Score=70.27  Aligned_cols=101  Identities=20%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHh--
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFD--   98 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~--   98 (375)
                      +-..|||... .......+..+|++++|+|+..+...........  ..++|+++|+||+|+....  .....+..+.  
T Consensus        54 iiDtpG~~~~-~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~  132 (168)
T cd01887          54 FIDTPGHEAF-TNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ  132 (168)
T ss_pred             EEeCCCcHHH-HHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc
Confidence            3447898542 1222346789999999999986543222111111  3578999999999997532  1112222111  


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                           ....+++.+|++++.|++++++++.++.
T Consensus       133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         133 GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             ccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence                 1134789999999999999999987764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>CHL00071 tufA elongation factor Tu

Probab=98.24  E-value=1.1e-05  Score=81.36  Aligned_cols=133  Identities=14%  Similarity=0.065  Sum_probs=82.1

Q ss_pred             hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEc
Q 017187            9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNK   81 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK   81 (375)
                      ||+++....+.+...+    +-.-|||. +-++.+...+..+|++++|+|++.+.......+..+  ..++| +|+++||
T Consensus        59 rg~T~~~~~~~~~~~~~~~~~iDtPGh~-~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK  137 (409)
T CHL00071         59 RGITINTAHVEYETENRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNK  137 (409)
T ss_pred             CCEeEEccEEEEccCCeEEEEEECCChH-HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEc
Confidence            6666554444444332    45689985 667778888999999999999987665443333333  35678 6688999


Q ss_pred             CCCCChhhHH-----HHHHHHhhCC-----CcEEEEecCCcc------------------CHHHHHHHHHHHHhhh-hcc
Q 017187           82 KDLANPNILN-----KWVRHFDSCK-----QDYIAINAHSRS------------------SVQKLLELVELKLKEV-ISR  132 (375)
Q Consensus        82 ~DL~~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~~~------------------gvk~Ll~~L~~~l~~~-~~~  132 (375)
                      +|+++.+...     +..++++..+     .+++++|+.++.                  ++..|++.+...++.. ...
T Consensus       138 ~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~  217 (409)
T CHL00071        138 EDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDT  217 (409)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCC
Confidence            9998754321     2334443333     468899988764                  2456666666554321 122


Q ss_pred             CCceEEEEEc
Q 017187          133 EPTLLVMVVG  142 (375)
Q Consensus       133 ~~~~~v~vvG  142 (375)
                      ..++++.|-.
T Consensus       218 ~~p~r~~I~~  227 (409)
T CHL00071        218 DKPFLMAIED  227 (409)
T ss_pred             CCCEEEEEEE
Confidence            3445554444

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.24  E-value=9.5e-06  Score=85.41  Aligned_cols=125  Identities=13%  Similarity=0.131  Sum_probs=80.5

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhh---HHHHHHHHhh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNI---LNKWVRHFDS   99 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~   99 (375)
                      +-.-|||.. ....+...++.||.+|+|+|+..+.+..... +... ..+.|+++|+||+|+.....   .+++.+.+.-
T Consensus        74 liDTPG~~d-F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~  152 (595)
T TIGR01393        74 LIDTPGHVD-FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL  152 (595)
T ss_pred             EEECCCcHH-HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC
Confidence            345799964 4456778899999999999998765543221 2111 35689999999999964321   1233333311


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKSA  150 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKSs  150 (375)
                      ...+++++||+++.|+++|++.+.+.++... ....+++..|.-   -|+.|+-+
T Consensus       153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~  207 (595)
T TIGR01393       153 DASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVA  207 (595)
T ss_pred             CcceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEE
Confidence            1124789999999999999999988877541 223344444433   24555533

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04158 ARD1 ARD1 subfamily

Probab=98.23  E-value=2.7e-06  Score=74.62  Aligned_cols=101  Identities=20%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      ..||+. +........+..+|++++|+|+..+.+-  ....+..+     ..+.|+++|.||+||.+....+...+++. 
T Consensus        49 Dt~G~~-~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  127 (169)
T cd04158          49 DVGGKH-KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL  127 (169)
T ss_pred             ECCCCh-hcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCC
Confidence            467763 2223344667999999999999765322  11122222     23479999999999975433333333332 


Q ss_pred             -hC----CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 -SC----KQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 -~~----g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                       +.    ...++.+||+++.|+++++++|.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         128 HKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             ccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence             11    1246678999999999999999776654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.23  E-value=4.1e-06  Score=72.82  Aligned_cols=95  Identities=20%  Similarity=0.104  Sum_probs=60.1

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD--   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~--   98 (375)
                      .||+- +........++.+|++|+|+|+..+.+-  ....+.+.     ....|+++|.||+||.+.....+....+.  
T Consensus        51 ~~G~~-~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~  129 (159)
T cd04150          51 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLH  129 (159)
T ss_pred             CCCCH-hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence            58873 2223334568999999999999764321  11122222     23589999999999965422223222221  


Q ss_pred             ---hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           99 ---SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                         .....++.+||+++.|+++++++|.
T Consensus       130 ~~~~~~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         130 SLRNRNWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             ccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence               1223466799999999999998874

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04151 Arl1 Arl1 subfamily

Probab=98.23  E-value=4.2e-06  Score=72.27  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=61.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      ..||+-.. .......++.+|++|+|+|+..+.+..  ...+...     ..++|+++|+||+|+.+.....+....+. 
T Consensus        49 Dt~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~  127 (158)
T cd04151          49 DLGGQTSI-RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGL  127 (158)
T ss_pred             ECCCCHHH-HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCc
Confidence            37887321 122235688999999999997653211  1122221     24689999999999975432233333331 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                          ..+.+++++||+++.|++++++++.
T Consensus       128 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         128 SELKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             cccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence                1224689999999999999998874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01866 Rab2 Rab2 subfamily

Probab=98.23  E-value=2.7e-06  Score=74.43  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccCC-cEEEEEcCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRP-SIYVLDTPGV  203 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi  203 (375)
                      .++++++|.||||||||+|.+.+           .+... ..+..|.+.....+.+.... .+.++||||.
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   63 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTD-----------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ   63 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc-----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence            47899999999999999999986           11111 12223443333333343322 4789999994

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.23  E-value=4.9e-06  Score=71.83  Aligned_cols=98  Identities=14%  Similarity=-0.009  Sum_probs=64.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..|||.. ...-....++.+|.+++|+|+..+.+-..  ..+..+     ..+.|+++|+||+|+.+...  .+...++.
T Consensus        56 Dt~G~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~  134 (164)
T cd04145          56 DTAGQEE-FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA  134 (164)
T ss_pred             ECCCCcc-hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH
Confidence            4688742 22234466889999999999976533211  111111     24679999999999975422  12222333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      +..+.+++.+||+++.|++++++.+.+.
T Consensus       135 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  162 (164)
T cd04145         135 RKLKIPYIETSAKDRLNVDKAFHDLVRV  162 (164)
T ss_pred             HHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence            3446688999999999999999888654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03118 Rab family protein; Provisional

Probab=98.23  E-value=2.7e-06  Score=77.58  Aligned_cols=61  Identities=23%  Similarity=0.377  Sum_probs=40.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ..++++|+|.+|||||||+|+|..           .......+..|++.....+.+... -.+.++||||...
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   74 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFIS-----------SSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER   74 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh-----------CCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence            457899999999999999999996           122233344444443334444322 2478999999643

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.23  E-value=4.1e-06  Score=71.73  Aligned_cols=81  Identities=15%  Similarity=0.052  Sum_probs=57.7

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCCCcEEEEecCCccCHHHHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFD-SCKQDYIAINAHSRSSVQKLLEL  121 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~~  121 (375)
                      +.+|++|+|+|++.+.... ..+... ..++|+++|+||+|+.+......+.+.+. ..+.+++.+|+.++.|++++++.
T Consensus        73 ~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          73 EKPDLIVNVVDATNLERNL-YLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             CCCcEEEEEeeCCcchhHH-HHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            5999999999998653221 122222 35789999999999986543333333332 34668999999999999999988


Q ss_pred             HHHH
Q 017187          122 VELK  125 (375)
Q Consensus       122 L~~~  125 (375)
                      +...
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8664

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.22  E-value=7.1e-06  Score=70.71  Aligned_cols=101  Identities=12%  Similarity=-0.004  Sum_probs=68.6

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc---c-CCCCEEEEEEcCCCCChh--hHHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ---L-SAKRRVIALNKKDLANPN--ILNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~---~-~~kp~IiVlNK~DL~~~~--~~~~~~~~~   97 (375)
                      -..||+- +........++.+|++|+|+|++.+.+....  .+...   . .+.|+++|.||+|+....  ..+...++.
T Consensus        54 ~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~  132 (164)
T smart00175       54 WDTAGQE-RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA  132 (164)
T ss_pred             EECCChH-HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH
Confidence            3478863 2234445678899999999999876443211  11121   1 468999999999987532  122233333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +..+.+++.+|+.++.|++++++.+.+.+.
T Consensus       133 ~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      133 EEHGLPFFETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            445678999999999999999999887654

Rab GTPases are implicated in vesicle trafficking.

>cd01862 Rab7 Rab7 subfamily

Probab=98.22  E-value=7.6e-06  Score=71.18  Aligned_cols=101  Identities=19%  Similarity=0.043  Sum_probs=66.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-h-Hhhc---c-----CCCCEEEEEEcCCCCChh--hHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-G-LQPQ---L-----SAKRRVIALNKKDLANPN--ILNKWV   94 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-~-l~~~---~-----~~kp~IiVlNK~DL~~~~--~~~~~~   94 (375)
                      ..|||.. ........++++|++|+|+|+..+.+..+. . ...+   .     .++|+++|+||+|+.++.  ..+...
T Consensus        55 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  133 (172)
T cd01862          55 DTAGQER-FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQ  133 (172)
T ss_pred             eCCChHH-HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHH
Confidence            5788753 223344678899999999999876432111 1 1111   1     268999999999998322  122333


Q ss_pred             HHHhhCC-CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           95 RHFDSCK-QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        95 ~~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+.+..+ .+++.+|++++.|++++++.+.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         134 QWCQSNGNIPYFETSAKEAINVEQAFETIARKALE  168 (172)
T ss_pred             HHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3444444 578999999999999999998766543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.22  E-value=1.1e-06  Score=80.17  Aligned_cols=68  Identities=21%  Similarity=0.146  Sum_probs=41.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh-hccccccccc--------c----------cccccCCCCCeeeeeEEEEE-ccCCcEE
Q 017187          137 LVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK--------T----------KRATVGPLPGVTQDIAGFKI-AHRPSIY  196 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k--------~----------~~~~v~~~pg~T~~~~~~~i-~~~~~~~  196 (375)
                      +|+++|.+|+|||||+|+|+.. +.+.....++        .          ........+|+|++.....+ ..+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            4899999999999999999762 2222100000        0          00111123688888764322 2334689


Q ss_pred             EEEcCCCC
Q 017187          197 VLDTPGVL  204 (375)
Q Consensus       197 liDTPGi~  204 (375)
                      ++||||..
T Consensus        81 liDTpG~~   88 (208)
T cd04166          81 IADTPGHE   88 (208)
T ss_pred             EEECCcHH
Confidence            99999973

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.22  E-value=4.6e-06  Score=83.41  Aligned_cols=92  Identities=17%  Similarity=0.119  Sum_probs=63.3

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCC-----CCCCchhHhhc------cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCC--C
Q 017187           37 RAIKHRLKISDLVIEVRDSRIP-----LSSAHPGLQPQ------LSAKRRVIALNKKDLANPNILNKWVRHFD-SCK--Q  102 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p-----~s~~~~~l~~~------~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g--~  102 (375)
                      .++.+.++++|++++|+|+...     .......+.++      +..+|.++|+||+|+.+.....+.++.+. ..+  .
T Consensus       229 ~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~  308 (390)
T PRK12298        229 IRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEG  308 (390)
T ss_pred             HHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCC
Confidence            3556789999999999998621     11111111111      13689999999999987654444444432 222  3


Q ss_pred             cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          103 DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       103 ~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .++++||+++.++++|++.+.+.+++
T Consensus       309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        309 PVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            68999999999999999999887765

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.22  E-value=3e-06  Score=73.14  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||||||||+|++.+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~   22 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCE   22 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999997

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=98.21  E-value=3.8e-06  Score=72.88  Aligned_cols=60  Identities=20%  Similarity=0.256  Sum_probs=36.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      .++++++|.||||||||+|++.+.          .......+..|++-....+.+... -.+.++||||..
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~   63 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRN----------EFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE   63 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence            368999999999999999999861          111122222232222222323321 147799999964

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.20  E-value=4.6e-06  Score=71.87  Aligned_cols=96  Identities=17%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      ..||+-. ........+..+|++|+|+|++.+.+-.  ...+.+.     ..+.|+++|+||+|+.......+....+. 
T Consensus        50 D~~G~~~-~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~  128 (160)
T cd04156          50 DVGGQEK-MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKL  128 (160)
T ss_pred             ECCCCHh-HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCC
Confidence            3677632 2222334688999999999998764211  1122222     25789999999999964322223322221 


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                           ..+.+++.+||+++.|+++++++|.
T Consensus       129 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         129 KKYCSDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             cccCCCCcEEEEecccccCCChHHHHHHHh
Confidence                 1233578899999999999988874

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.20  E-value=6.5e-06  Score=73.42  Aligned_cols=99  Identities=16%  Similarity=0.071  Sum_probs=63.8

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDSC  100 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~  100 (375)
                      .||+- +........++++|++|+|+|+.++.+-.+  ..+.++     ..+.|+++|.||+|+......++..+.+.-.
T Consensus        68 ~~Gq~-~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~  146 (181)
T PLN00223         68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH  146 (181)
T ss_pred             CCCCH-HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence            68872 222223445899999999999986532211  122222     2468999999999997654444444443211


Q ss_pred             -----CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          101 -----KQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       101 -----g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                           ...++.+||++++|+++++++|.+.+.
T Consensus       147 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
T ss_pred             ccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence                 113456899999999999999977654

>cd04154 Arl2 Arl2 subfamily

Probab=98.20  E-value=2.7e-06  Score=74.81  Aligned_cols=58  Identities=17%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ...++++++|.+|||||||+|+|.+.           ....+.+..|....  .+.+. .-.+.++||||..
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~-----------~~~~~~~t~g~~~~--~~~~~-~~~l~l~D~~G~~   69 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGE-----------DIDTISPTLGFQIK--TLEYE-GYKLNIWDVGGQK   69 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccC-----------CCCCcCCccccceE--EEEEC-CEEEEEEECCCCH
Confidence            55689999999999999999999861           11223333332221  22232 2357899999964

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.19  E-value=4.4e-06  Score=72.04  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||||||||+|++.+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999986

Rab GTPases are implicated in vesicle trafficking.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.19  E-value=9.4e-06  Score=69.84  Aligned_cols=99  Identities=12%  Similarity=-0.040  Sum_probs=66.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCCh--hhHHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANP--NILNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~--~~~~~~~~~~   97 (375)
                      +.||+-. ........++.+|.+++|+|...+.+-.  ...+..+     ..++|+++|+||+|+.+.  .......+..
T Consensus        54 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~  132 (164)
T cd04139          54 DTAGQED-YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA  132 (164)
T ss_pred             ECCChhh-hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH
Confidence            4677643 2233445788999999999987653211  1122222     146899999999999762  1222333333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      .+.+.+++.+|++++.|++++++.+.+.+
T Consensus       133 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (164)
T cd04139         133 RQWGVPYVETSAKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             HHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999887655

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK12735 elongation factor Tu; Reviewed

Probab=98.18  E-value=2.1e-05  Score=79.01  Aligned_cols=135  Identities=14%  Similarity=0.078  Sum_probs=83.8

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EEE
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IAL   79 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iVl   79 (375)
                      ..||+++....+.+...+    +-.-|||. +-++.+...+..+|++++|+|+..............  ..++|.+ +++
T Consensus        57 ~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvv  135 (396)
T PRK12735         57 KARGITINTSHVEYETANRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFL  135 (396)
T ss_pred             HhcCceEEEeeeEEcCCCcEEEEEECCCHH-HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence            467776665555554443    34689994 566778888999999999999987544332222222  3467866 579


Q ss_pred             EcCCCCChhhHH-----HHHHHHhhC-----CCcEEEEecCCc----------cCHHHHHHHHHHHHhhh-hccCCceEE
Q 017187           80 NKKDLANPNILN-----KWVRHFDSC-----KQDYIAINAHSR----------SSVQKLLELVELKLKEV-ISREPTLLV  138 (375)
Q Consensus        80 NK~DL~~~~~~~-----~~~~~~~~~-----g~~vi~iSa~~~----------~gvk~Ll~~L~~~l~~~-~~~~~~~~v  138 (375)
                      ||+|+++.+...     +..+++...     ..+++++|+.++          .++..|++.+...++.. .....++++
T Consensus       136 NK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~  215 (396)
T PRK12735        136 NKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLM  215 (396)
T ss_pred             EecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEE
Confidence            999998543221     222333322     256889999887          36788888887765422 222334554


Q ss_pred             EEEc
Q 017187          139 MVVG  142 (375)
Q Consensus       139 ~vvG  142 (375)
                      .|-.
T Consensus       216 ~I~~  219 (396)
T PRK12735        216 PIED  219 (396)
T ss_pred             EEEE
Confidence            4443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.17  E-value=2.3e-05  Score=78.61  Aligned_cols=120  Identities=14%  Similarity=0.052  Sum_probs=75.5

Q ss_pred             HHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EE
Q 017187            6 IIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IA   78 (375)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iV   78 (375)
                      -..||+++....+.+...+    +-.-|||. +.+..+...+..+|++++|+|++.+..........+  ..+.|.+ +|
T Consensus        56 E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~-~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvv  134 (394)
T TIGR00485        56 EKARGITINTAHVEYETENRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVF  134 (394)
T ss_pred             HHhcCcceeeEEEEEcCCCEEEEEEECCchH-HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEE
Confidence            3457887776666665443    34689995 456777777889999999999987544332222222  3467765 68


Q ss_pred             EEcCCCCChhhHH-----HHHHHHhhCC-----CcEEEEecCCcc--------CHHHHHHHHHHHH
Q 017187           79 LNKKDLANPNILN-----KWVRHFDSCK-----QDYIAINAHSRS--------SVQKLLELVELKL  126 (375)
Q Consensus        79 lNK~DL~~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~~~--------gvk~Ll~~L~~~l  126 (375)
                      +||+|+++.+...     +..++++..+     .+++++|+.++.        ++..+++.+...+
T Consensus       135 vNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~  200 (394)
T TIGR00485       135 LNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI  200 (394)
T ss_pred             EEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence            9999998643221     2333343322     578999998763        2345555555443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.17  E-value=1.4e-05  Score=81.06  Aligned_cols=109  Identities=18%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh------HhhccCCCCEEE
Q 017187            8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG------LQPQLSAKRRVI   77 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~------l~~~~~~kp~Ii   77 (375)
                      .||+++......+...+    +-.-|||. +-++.+...+..+|++|+|+|++.+.+...+.      +.+.....++|+
T Consensus        68 ~rg~Tid~~~~~~~~~~~~i~iiDtpGh~-~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIV  146 (426)
T TIGR00483        68 ERGVTIDVAHWKFETDKYEVTIVDCPGHR-DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIV  146 (426)
T ss_pred             hcCceEEEEEEEEccCCeEEEEEECCCHH-HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEE
Confidence            34555444444444433    34589984 45566777789999999999998763222221      111133356888


Q ss_pred             EEEcCCCCC--hhhH----HHHHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187           78 ALNKKDLAN--PNIL----NKWVRHFDSCK-----QDYIAINAHSRSSVQK  117 (375)
Q Consensus        78 VlNK~DL~~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~~~gvk~  117 (375)
                      |+||+|+.+  ++..    +++.++++..+     .+++++||+++.|+.+
T Consensus       147 viNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       147 AINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             EEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            999999974  2221    23334443333     4689999999998875

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.17  E-value=2.8e-06  Score=80.82  Aligned_cols=98  Identities=19%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             ccccch-----hHHHHH-HHHHHHhhhcCeEEEEEeCCCCCCCCch---------hHhhc---cCCCCEEEEEEcCCCCC
Q 017187           25 INWFPG-----HMAAAT-RAIKHRLKISDLVIEVRDSRIPLSSAHP---------GLQPQ---LSAKRRVIALNKKDLAN   86 (375)
Q Consensus        25 ~~wfpg-----Hm~k~~-~~i~~~l~~~DlVI~VvDar~p~s~~~~---------~l~~~---~~~kp~IiVlNK~DL~~   86 (375)
                      +-..||     ||++++ -+..+-+++|+.+++|+|...+.. +++         +++-+   +..+|.++|+||+|+.+
T Consensus       248 VADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e  326 (366)
T KOG1489|consen  248 VADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE  326 (366)
T ss_pred             eccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence            445665     888877 467788999999999999875421 111         11112   46799999999999953


Q ss_pred             hhh--HHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           87 PNI--LNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        87 ~~~--~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .+.  ++++.++++  +..++++||++++++.+|++.++..
T Consensus       327 ae~~~l~~L~~~lq--~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  327 AEKNLLSSLAKRLQ--NPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             HHHHHHHHHHHHcC--CCcEEEeeeccccchHHHHHHHhhc
Confidence            322  133333332  2358999999999999999887653

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.17  E-value=3.5e-06  Score=83.92  Aligned_cols=162  Identities=15%  Similarity=0.177  Sum_probs=102.4

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc----cCCCCEEEEEEcCCCCCh--hhHHH-HHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ----LSAKRRVIALNKKDLANP--NILNK-WVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~----~~~kp~IiVlNK~DL~~~--~~~~~-~~~~~~   98 (375)
                      -.=|||..-.-+ ..+.++.|.-.++|+||......+  -+.+.    ..+-.+|-|+||+||...  +.... ..+.+.
T Consensus        81 IDTPGHVDFsYE-VSRSLAACEGalLvVDAsQGveAQ--TlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG  157 (603)
T COG0481          81 IDTPGHVDFSYE-VSRSLAACEGALLVVDASQGVEAQ--TLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG  157 (603)
T ss_pred             cCCCCccceEEE-ehhhHhhCCCcEEEEECccchHHH--HHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC
Confidence            346999766544 446789999999999998765443  23332    457789999999999643  33322 222221


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL  177 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~  177 (375)
                      =....++.+||++|.|++++++.+.+.++.. +....+++.+++       -|...+.++            ..+-+.-.
T Consensus       158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALif-------DS~yD~Y~G------------Vv~~vRi~  218 (603)
T COG0481         158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIF-------DSWYDNYLG------------VVVLVRIF  218 (603)
T ss_pred             CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEE-------eccccccce------------EEEEEEEe
Confidence            0112578999999999999999999988765 445667777776       233444443            12222223


Q ss_pred             CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187          178 PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       178 pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~  209 (375)
                      .|+-+....+++.....-+-++--|++.|...
T Consensus       219 dG~ik~gdki~~m~tg~~y~V~evGvftP~~~  250 (603)
T COG0481         219 DGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMV  250 (603)
T ss_pred             eceecCCCEEEEEecCCEEEEEEEeeccCCcc
Confidence            34444444444444445667777777777543

>PRK13768 GTPase; Provisional

Probab=98.17  E-value=7.9e-06  Score=77.06  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             HHHHHHhhh--cCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhhHHHHHHHHh---------
Q 017187           37 RAIKHRLKI--SDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNILNKWVRHFD---------   98 (375)
Q Consensus        37 ~~i~~~l~~--~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~~~~~---------   98 (375)
                      +.+.+.+..  .+++++|+|++.+....+.....+       ..++|+++|+||+|+.+....+...+++.         
T Consensus       118 ~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l  197 (253)
T PRK13768        118 RKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEEL  197 (253)
T ss_pred             HHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHH
Confidence            344445554  899999999986544333222111       35789999999999987654433332221         


Q ss_pred             -------------------hCC--CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 -------------------SCK--QDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 -------------------~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                                         +.+  .+++++|++++.|+++|++++.+.++
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        198 KLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence                               223  47889999999999999999988764

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.17  E-value=9.2e-06  Score=70.57  Aligned_cols=99  Identities=14%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-CCCCEEEEEEcCCCCChhhH--HHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-SAKRRVIALNKKDLANPNIL--NKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-~~kp~IiVlNK~DL~~~~~~--~~~~~~~~   98 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+  ..+...   . .+.|+++|.||+|+......  +...++.+
T Consensus        57 D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~  135 (166)
T cd01869          57 DTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD  135 (166)
T ss_pred             ECCCcHh-HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHH
Confidence            4788753 33334567889999999999976432211  111111   1 46799999999998654321  22223333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ..+.+++.+|++++.|++++++.+.+.+
T Consensus       136 ~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         136 ELGIPFLETSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence            4466889999999999999999887655

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.17  E-value=5.9e-06  Score=73.06  Aligned_cols=99  Identities=17%  Similarity=0.048  Sum_probs=62.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      ..||+- +........++++|++|+|+|+..+.+-  ....+.+.     ..+.|+++|.||+||.+.....+..+.+. 
T Consensus        63 D~~G~~-~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~  141 (175)
T smart00177       63 DVGGQD-KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL  141 (175)
T ss_pred             ECCCCh-hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCc
Confidence            367763 2222234557999999999998765321  11122222     23579999999999965322223222221 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                          .....++.+||+++.|+++++++|.+.+
T Consensus       142 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      142 HSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             cccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                1122456799999999999999987654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.16  E-value=5.4e-06  Score=72.33  Aligned_cols=100  Identities=19%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             ccccchhHHHH------HHHHHHHhhhcCeEEEEEeCCCCC-----CCCc--h----hHhhc--------cCCCCEEEEE
Q 017187           25 INWFPGHMAAA------TRAIKHRLKISDLVIEVRDSRIPL-----SSAH--P----GLQPQ--------LSAKRRVIAL   79 (375)
Q Consensus        25 ~~wfpgHm~k~------~~~i~~~l~~~DlVI~VvDar~p~-----s~~~--~----~l~~~--------~~~kp~IiVl   79 (375)
                      +-..||+....      .+++...+..+|+|++|+|+..+.     ....  .    .+...        ..++|+++|+
T Consensus        48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  127 (176)
T cd01881          48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL  127 (176)
T ss_pred             EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence            34467863221      224556788999999999998763     1111  0    11111        1368999999


Q ss_pred             EcCCCCChhhHHHHH--HHHhhCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           80 NKKDLANPNILNKWV--RHFDSCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        80 NK~DL~~~~~~~~~~--~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      ||+|+.+......+.  ......+..++.+|++++.|++++++.+..
T Consensus       128 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         128 NKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence            999998766555441  222234557899999999999999888754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00879 Sar1 Sar1 subfamily

Probab=98.16  E-value=6.8e-06  Score=73.21  Aligned_cols=98  Identities=16%  Similarity=0.085  Sum_probs=63.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~   99 (375)
                      ..|||... .+.....++.+|.+++|+|+..+.+-  ....+...     ..+.|+++|+||+|+......+...+++..
T Consensus        69 D~~G~~~~-~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~  147 (190)
T cd00879          69 DLGGHEQA-RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGL  147 (190)
T ss_pred             ECCCCHHH-HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc
Confidence            36887543 23334568999999999999764221  11122222     245899999999999743333333333321


Q ss_pred             ----------------CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187          100 ----------------CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       100 ----------------~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                                      ....++.+||+++.|++++++++.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence                            11357889999999999999998654

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.15  E-value=1.7e-05  Score=80.83  Aligned_cols=120  Identities=15%  Similarity=0.059  Sum_probs=78.1

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCE-EEEE
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRR-VIAL   79 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~-IiVl   79 (375)
                      ..||+++....+.+...+    +-.-|||. +-+..+...+..+|++++|+|++.+..........+  ..++|. |+|+
T Consensus       106 ~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~-~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvvi  184 (447)
T PLN03127        106 KARGITIATAHVEYETAKRHYAHVDCPGHA-DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFL  184 (447)
T ss_pred             hhcCceeeeeEEEEcCCCeEEEEEECCCcc-chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence            357777777666666543    45689994 566777778889999999999987765544333333  356785 6789


Q ss_pred             EcCCCCChhhHHH-----HHHHHhhC-----CCcEEEEecC---CccC-------HHHHHHHHHHHHh
Q 017187           80 NKKDLANPNILNK-----WVRHFDSC-----KQDYIAINAH---SRSS-------VQKLLELVELKLK  127 (375)
Q Consensus        80 NK~DL~~~~~~~~-----~~~~~~~~-----g~~vi~iSa~---~~~g-------vk~Ll~~L~~~l~  127 (375)
                      ||+|+++.+...+     +.+++...     ..+++++|+.   ++.+       +..|++.+.+.++
T Consensus       185 NKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        185 NKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             EeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            9999986433221     22222211     2457777765   3333       6788888877665

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.15  E-value=6.7e-06  Score=72.53  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=61.1

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD--   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~--   98 (375)
                      .||+-. ..+.....++.+|++++|+|+..+.+..  ...+.+.     ..++|+++|+||+|+......++..+.+.  
T Consensus        66 ~~G~~~-~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~  144 (174)
T cd04153          66 IGGQES-LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLT  144 (174)
T ss_pred             CCCCHH-HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence            688732 2222335588999999999997653211  1112222     23589999999999965322223333331  


Q ss_pred             ---hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           99 ---SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                         +...+++.+||+++.|+++++++|.
T Consensus       145 ~~~~~~~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         145 SIRDHTWHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             cccCCceEEEecccCCCCCHHHHHHHHh
Confidence               2234678999999999999998874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.15  E-value=8.3e-06  Score=82.24  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             HHHHHhhhcCeEEEEEeCCCC-----CCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEE
Q 017187           38 AIKHRLKISDLVIEVRDSRIP-----LSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIA  106 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p-----~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~  106 (375)
                      +..+.++++|++|+|+|+...     ......   ++..+   ..++|.++|+||+||....  +.+.++.+..+.++++
T Consensus       229 ~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~  306 (424)
T PRK12297        229 QFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFP  306 (424)
T ss_pred             HHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEE
Confidence            445667889999999998542     111111   12222   2478999999999985332  1222222223367899


Q ss_pred             EecCCccCHHHHHHHHHHHHhh
Q 017187          107 INAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +||+++.|+++|++++.+.+.+
T Consensus       307 iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        307 ISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999877654

>PRK00049 elongation factor Tu; Reviewed

Probab=98.15  E-value=2.9e-05  Score=77.90  Aligned_cols=135  Identities=13%  Similarity=0.070  Sum_probs=84.9

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EEE
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IAL   79 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iVl   79 (375)
                      ..||+++....+.....+    +-.-||| .+-++.+...+..+|++++|+|++.+.......+..+  ..++|.+ +++
T Consensus        57 ~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvv  135 (396)
T PRK00049         57 KARGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFL  135 (396)
T ss_pred             HhcCeEEeeeEEEEcCCCeEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEE
Confidence            456776666555554433    3468999 4667778888999999999999987765544333333  3568876 579


Q ss_pred             EcCCCCChhhH-H----HHHHHHhhC-----CCcEEEEecCCcc----------CHHHHHHHHHHHHhhh-hccCCceEE
Q 017187           80 NKKDLANPNIL-N----KWVRHFDSC-----KQDYIAINAHSRS----------SVQKLLELVELKLKEV-ISREPTLLV  138 (375)
Q Consensus        80 NK~DL~~~~~~-~----~~~~~~~~~-----g~~vi~iSa~~~~----------gvk~Ll~~L~~~l~~~-~~~~~~~~v  138 (375)
                      ||+|+++.+.. +    +..+++...     ..+++++|+.++.          ++..|++.|...++.. .....++++
T Consensus       136 NK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~  215 (396)
T PRK00049        136 NKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLM  215 (396)
T ss_pred             eecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEE
Confidence            99999854321 1    233334332     2468899998753          4677888777655321 222345554


Q ss_pred             EEEc
Q 017187          139 MVVG  142 (375)
Q Consensus       139 ~vvG  142 (375)
                      .|..
T Consensus       216 ~I~~  219 (396)
T PRK00049        216 PIED  219 (396)
T ss_pred             EEEE
Confidence            4443

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.14  E-value=8.5e-06  Score=70.11  Aligned_cols=97  Identities=16%  Similarity=0.097  Sum_probs=64.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      .+||+... .......+..+|++++|+|+..+.+...  ..+...     ..+.|+++|+||+|+.......+..+.+. 
T Consensus        49 D~~G~~~~-~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~  127 (158)
T cd00878          49 DVGGQDKI-RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGL  127 (158)
T ss_pred             ECCCChhh-HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhCh
Confidence            37888542 2234456799999999999987532111  122222     24689999999999986543333333332 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                          ....+++.+|++++.|+++++++|..
T Consensus       128 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         128 EKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             hhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence                12346889999999999999888753

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.14  E-value=1e-05  Score=72.04  Aligned_cols=100  Identities=16%  Similarity=0.037  Sum_probs=62.3

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD--   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~--   98 (375)
                      .||+-. ........++++|++|+|+|+..+.+-..  ..+.++     ..++|+++|+||+|+............+.  
T Consensus        59 t~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~  137 (183)
T cd04152          59 VGGQEK-LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALH  137 (183)
T ss_pred             CCCcHh-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCcc
Confidence            578621 11122345788999999999976532111  122222     24689999999999864322222222221  


Q ss_pred             h----CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 S----CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~----~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .    .+.+++++||+++.|++++++++.+.+.+
T Consensus       138 ~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         138 ELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             ccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence            1    12357889999999999999998876644

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04112 Rab26 Rab26 subfamily

Probab=98.13  E-value=1.3e-05  Score=71.87  Aligned_cols=101  Identities=12%  Similarity=0.057  Sum_probs=66.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+..- .......+..+|++|+|+|+..+.+-.+     ..+.+. ..+.|+++|+||+|+..+..  .+......+
T Consensus        56 Dt~G~~~~-~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~  134 (191)
T cd04112          56 DTAGQERF-RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAK  134 (191)
T ss_pred             eCCCcHHH-HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHH
Confidence            57887432 2223456788999999999976532211     111111 23679999999999964321  122222223


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+|++++.|+++++.++.+.+..
T Consensus       135 ~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~  164 (191)
T cd04112         135 EYGVPFMETSAKTGLNVELAFTAVAKELKH  164 (191)
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            445688999999999999999999877755

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.13  E-value=1.4e-05  Score=80.90  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCC--CCCCCchhHhhc---cCCCCEEEE
Q 017187            8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRI--PLSSAHPGLQPQ---LSAKRRVIA   78 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~--p~s~~~~~l~~~---~~~kp~IiV   78 (375)
                      .+|++.......+...+    +-.-||| .+-++.+...+..+|++|+|+|+..  +..........+   ....++++|
T Consensus        67 ~rG~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivv  145 (425)
T PRK12317         67 ERGVTIDLAHKKFETDKYYFTIVDCPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVA  145 (425)
T ss_pred             hcCccceeeeEEEecCCeEEEEEECCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEE
Confidence            45665544444443332    3347998 3444556667889999999999987  433332222222   233468899


Q ss_pred             EEcCCCCCh--hhH----HHHHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187           79 LNKKDLANP--NIL----NKWVRHFDSCK-----QDYIAINAHSRSSVQK  117 (375)
Q Consensus        79 lNK~DL~~~--~~~----~~~~~~~~~~g-----~~vi~iSa~~~~gvk~  117 (375)
                      +||+|+.+.  +..    ++..+++...+     .+++++||+++.|+.+
T Consensus       146 iNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        146 INKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             EEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence            999999752  111    22333333333     3689999999999875

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.13  E-value=1.2e-05  Score=69.33  Aligned_cols=99  Identities=16%  Similarity=0.063  Sum_probs=64.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chh---Hhhcc------CCCCEEEEEEcCCCCChh--hHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPG---LQPQL------SAKRRVIALNKKDLANPN--ILNKW   93 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~---l~~~~------~~kp~IiVlNK~DL~~~~--~~~~~   93 (375)
                      ..||+- +........+..+|++|+|+|.+.+.+-.  ...   +.+..      .+.|+++|.||+|+.++.  .....
T Consensus        55 Dt~G~~-~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  133 (168)
T cd04119          55 DLSGHP-EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEG  133 (168)
T ss_pred             ECCccH-HHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHH
Confidence            467763 22233445678999999999998753311  111   11211      357899999999997322  12223


Q ss_pred             HHHHhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           94 VRHFDSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ..+.++.+.+++.+||+++.|++++++.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         134 RLWAESKGFKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            333334567889999999999999999987653

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.13  E-value=6.4e-06  Score=71.88  Aligned_cols=60  Identities=18%  Similarity=0.259  Sum_probs=36.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      .++|+++|.||||||||+|++.+. .         -.....+..|++.....+.+... -.+.++||||..
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~-~---------f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~   63 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSED-S---------FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE   63 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC-c---------CCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence            478999999999999999999861 0         01111222233332223333322 146789999953

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04113 Rab4 Rab4 subfamily

Probab=98.13  E-value=5.3e-06  Score=71.64  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.||||||||+|.|.+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999999986

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.13  E-value=9.6e-06  Score=68.87  Aligned_cols=97  Identities=11%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      .+||+- +........+..+|++++|+|++.+.+...  ..+.+.     ..++|+++|+||+|+.+......+...+. 
T Consensus        50 D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  128 (159)
T cd04159          50 DLGGQP-RFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNL  128 (159)
T ss_pred             ECCCCH-hHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCc
Confidence            378873 222334567899999999999976432110  112222     24689999999999976544433333331 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                          ....+++.+|++++.|++++++++.+
T Consensus       129 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         129 KSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence                12346789999999999999988754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01865 Rab3 Rab3 subfamily

Probab=98.12  E-value=1.7e-05  Score=69.10  Aligned_cols=98  Identities=12%  Similarity=0.031  Sum_probs=65.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--------cCCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--------LSAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--------~~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      ..||+... .......++.+|++++|+|...+.+-.  .+.++        ....|+++|.||+||.+...  .+...++
T Consensus        56 Dt~g~~~~-~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~  132 (165)
T cd01865          56 DTAGQERY-RTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQL  132 (165)
T ss_pred             ECCChHHH-HHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence            47777432 222345689999999999987543211  12221        13578999999999975422  2222333


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+..+.+++.+||+++.|++++++.+.+.+.
T Consensus       133 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         133 ADQLGFEFFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3345668899999999999999999877653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.12  E-value=2.7e-05  Score=79.88  Aligned_cols=109  Identities=20%  Similarity=0.234  Sum_probs=67.4

Q ss_pred             HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhccCCCCEEEEEE
Q 017187            8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQLSAKRRVIALN   80 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~~~~kp~IiVlN   80 (375)
                      .||+++.-....+....    +-.-|||. +-.+.+...+..+|++++|+|+..+......   .+......+++|+|+|
T Consensus        90 ~rgiTid~~~~~~~~~~~~i~~iDTPGh~-~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvN  168 (474)
T PRK05124         90 EQGITIDVAYRYFSTEKRKFIIADTPGHE-QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVN  168 (474)
T ss_pred             hcCCCeEeeEEEeccCCcEEEEEECCCcH-HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEE
Confidence            45555443333333322    33479985 4455667778999999999999876544322   2222244467889999


Q ss_pred             cCCCCCh--hhHHHHHHH----HhhC----CCcEEEEecCCccCHHH
Q 017187           81 KKDLANP--NILNKWVRH----FDSC----KQDYIAINAHSRSSVQK  117 (375)
Q Consensus        81 K~DL~~~--~~~~~~~~~----~~~~----g~~vi~iSa~~~~gvk~  117 (375)
                      |+|+++.  +...+..+.    +...    ..+++++|++++.|+..
T Consensus       169 KiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~  215 (474)
T PRK05124        169 KMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS  215 (474)
T ss_pred             eeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence            9999842  222222222    2222    35789999999998765

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.12  E-value=3.5e-06  Score=74.29  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|+|||||+|+|.+
T Consensus         1 ~v~v~G~~~~GKStlln~l~~   21 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLY   21 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHH
Confidence            489999999999999999987

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04127 Rab27A Rab27a subfamily

Probab=98.12  E-value=1.4e-05  Score=70.34  Aligned_cols=99  Identities=14%  Similarity=-0.003  Sum_probs=65.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+.. ........++++|++|+|+|+..+.+-.+.  .+..+     ..+.|+++|.||+||.+...  .+...++.
T Consensus        69 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~  147 (180)
T cd04127          69 DTAGQER-FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA  147 (180)
T ss_pred             eCCChHH-HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH
Confidence            4788743 333445678999999999999765432211  11111     13578999999999975321  12222333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ++.+.+++.+||+++.|++++++.+.+.+
T Consensus       148 ~~~~~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         148 DKYGIPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            34466889999999999999999987654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01864 Rab19 Rab19 subfamily

Probab=98.12  E-value=7.1e-06  Score=71.29  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++++|.+|||||||+|++..
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999999985

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00154 Rab Rab family

Probab=98.12  E-value=1.3e-05  Score=68.04  Aligned_cols=96  Identities=14%  Similarity=0.013  Sum_probs=64.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCC-Chh-hHHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLA-NPN-ILNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~-~~~-~~~~~~~~~~   98 (375)
                      ..||+..- .......++++|++++|+|+..+.+...  ..+..+    ....|+++|+||+|+. +.. ..+...++..
T Consensus        55 D~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  133 (159)
T cd00154          55 DTAGQERF-RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK  133 (159)
T ss_pred             ecCChHHH-HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH
Confidence            57887432 2345677899999999999976432111  111111    1358999999999996 322 2233444444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                      ..+.+++.+|++++.|++++++++.
T Consensus       134 ~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         134 ENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             HcCCeEEEEecCCCCCHHHHHHHHh
Confidence            4567899999999999999988764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.12  E-value=7e-06  Score=70.85  Aligned_cols=23  Identities=48%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++++|.||||||||+|++.+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~   24 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQ   24 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Confidence            46899999999999999999986

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.11  E-value=2e-05  Score=72.45  Aligned_cols=91  Identities=18%  Similarity=0.162  Sum_probs=57.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC----CCchhHh---hc---cCCCCEEEEEEcCCCCC----hhhH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS----SAHPGLQ---PQ---LSAKRRVIALNKKDLAN----PNIL   90 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s----~~~~~l~---~~---~~~kp~IiVlNK~DL~~----~~~~   90 (375)
                      +-..|||.. -...+...+..+|++|+|+|+..+..    ....+..   ..   ...+|+++|+||+|+..    +...
T Consensus        81 liDtpG~~~-~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~  159 (219)
T cd01883          81 ILDAPGHRD-FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY  159 (219)
T ss_pred             EEECCChHH-HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence            345899954 34566677889999999999987421    1111111   11   23467888999999983    2222


Q ss_pred             HHHH----HHHhhC-----CCcEEEEecCCccCHH
Q 017187           91 NKWV----RHFDSC-----KQDYIAINAHSRSSVQ  116 (375)
Q Consensus        91 ~~~~----~~~~~~-----g~~vi~iSa~~~~gvk  116 (375)
                      ....    ..+...     ..+++++||+++.|++
T Consensus       160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            2222    233332     2468999999999976

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.11  E-value=8.1e-06  Score=70.93  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|.+.+
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~   24 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFAD   24 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            6899999999999999999986

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01889 SelB_euk SelB subfamily

Probab=98.10  E-value=3.4e-06  Score=75.69  Aligned_cols=64  Identities=25%  Similarity=0.371  Sum_probs=40.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEc-------------cCCcEEEEEc
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIA-------------HRPSIYVLDT  200 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~-------------~~~~~~liDT  200 (375)
                      ++|+++|.+|||||||+|+|.+.+...     .-........+|+|.+...  +.+.             ....+.++||
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~-----~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt   75 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTA-----AFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDC   75 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchh-----hhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEEC
Confidence            479999999999999999998621100     0011222334577776642  2222             1335889999


Q ss_pred             CCCC
Q 017187          201 PGVL  204 (375)
Q Consensus       201 PGi~  204 (375)
                      ||..
T Consensus        76 pG~~   79 (192)
T cd01889          76 PGHA   79 (192)
T ss_pred             CCcH
Confidence            9973

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.10  E-value=4.9e-06  Score=77.91  Aligned_cols=63  Identities=29%  Similarity=0.400  Sum_probs=49.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      .....++++|.+|||||||||.+...          ...+. +++.||-|+.++.+.+...  .+++|.||+...+
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~----------k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~~~a~  197 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRV----------KNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGYGRAG  197 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhh----------hhhhhhcCCCCccceeeeeeeccce--EEEEecCCccccc
Confidence            55678999999999999999999973          12233 3348999999998877654  8999999965433

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.10  E-value=1.3e-05  Score=68.64  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=63.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~   98 (375)
                      ..||+- +...-....++.+|.+++|+|...+.+-.+  ..   +.+.  ..+.|+++|.||+|+..... .....++.+
T Consensus        55 Dt~G~~-~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~  133 (162)
T cd04138          55 DTAGQE-EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK  133 (162)
T ss_pred             ECCCCc-chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH
Confidence            356652 222223356789999999999875432111  11   1121  24689999999999976432 223333333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      ..+.+++.+||+++.|++++++++.+.
T Consensus       134 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138         134 SYGIPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             HhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            456688999999999999999888654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=4.5e-06  Score=81.47  Aligned_cols=60  Identities=27%  Similarity=0.432  Sum_probs=45.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEE-----------cc-C-----CcE
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKI-----------AH-R-----PSI  195 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i-----------~~-~-----~~~  195 (375)
                      .+++++||.||||||||+|+|..            ..+..+++|.+|.++..  ..+           .. .     -.+
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~------------~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~v   69 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTK------------AGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPV   69 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHc------------CCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeee
Confidence            35799999999999999999996            23778899999988752  111           11 1     137


Q ss_pred             EEEEcCCCCCC
Q 017187          196 YVLDTPGVLVP  206 (375)
Q Consensus       196 ~liDTPGi~~~  206 (375)
                      .++|.+|+..-
T Consensus        70 e~vDIAGLV~G   80 (372)
T COG0012          70 EFVDIAGLVKG   80 (372)
T ss_pred             EEEEecccCCC
Confidence            89999999753

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.10  E-value=1.1e-05  Score=70.73  Aligned_cols=87  Identities=16%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch--hHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP--GLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~--~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      ..+..+|++|+|+|...+.+-.+.  .+..+   ..+.|+++|.||+|+..........++.+..+.+++.+||+++.|+
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  147 (166)
T cd00877          68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNF  147 (166)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCCh
Confidence            456789999999999865433211  11111   3379999999999997433222222333344567899999999999


Q ss_pred             HHHHHHHHHHHh
Q 017187          116 QKLLELVELKLK  127 (375)
Q Consensus       116 k~Ll~~L~~~l~  127 (375)
                      +++++++.+.+.
T Consensus       148 ~~~f~~l~~~~~  159 (166)
T cd00877         148 EKPFLWLARKLL  159 (166)
T ss_pred             HHHHHHHHHHHH
Confidence            999999977654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.10  E-value=3.6e-05  Score=68.69  Aligned_cols=85  Identities=18%  Similarity=0.125  Sum_probs=60.6

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQK  117 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~  117 (375)
                      ..++++++|+|+..+.+.....+.++  ..+.|+++|+||+|+.+....+.    +.+.+......++++|++++.|+++
T Consensus       105 ~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~  184 (196)
T PRK00454        105 ENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDE  184 (196)
T ss_pred             ccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHH
Confidence            34578999999887765543333333  34688999999999987544332    2233332246789999999999999


Q ss_pred             HHHHHHHHHhh
Q 017187          118 LLELVELKLKE  128 (375)
Q Consensus       118 Ll~~L~~~l~~  128 (375)
                      +.+.+.+.+++
T Consensus       185 l~~~i~~~~~~  195 (196)
T PRK00454        185 LRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHHhcC
Confidence            99999877643

>cd01861 Rab6 Rab6 subfamily

Probab=98.10  E-value=1.1e-05  Score=69.39  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=65.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-CCCCEEEEEEcCCCCChh-hHHH-HHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-SAKRRVIALNKKDLANPN-ILNK-WVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-~~kp~IiVlNK~DL~~~~-~~~~-~~~~~~   98 (375)
                      ..||+.. ....+...+..+|++++|+|+..+.+-.+  ..+..+   . .+.|+++|+||+|+.... ...+ .....+
T Consensus        55 D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~  133 (161)
T cd01861          55 DTAGQER-FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK  133 (161)
T ss_pred             ECCCcHH-HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHH
Confidence            3788743 33445667899999999999976533211  122222   1 248999999999995332 2222 223333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      ..+..++.+|++++.|++++.+++.+.
T Consensus       134 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         134 ELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             HhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            446788999999999999999988653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.09  E-value=1.6e-05  Score=68.58  Aligned_cols=95  Identities=13%  Similarity=0.017  Sum_probs=64.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+.. -..-....++.+|.+++|+|+..+.+..  .+..+       ..+.|+++|+||+|+.....  .++...+.
T Consensus        57 D~~G~~~-~~~~~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~  133 (162)
T cd04106          57 DTAGQEE-FDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALA  133 (162)
T ss_pred             eCCchHH-HHHhHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHH
Confidence            4688632 2223345689999999999987654321  12221       34789999999999975432  12233334


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      +..+.+++.+|++++.|++++++++..
T Consensus       134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         134 KRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             HHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            445678899999999999999888764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.09  E-value=7.5e-06  Score=78.35  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -.+++||+|.+|+|||||||+|++
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~   26 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFN   26 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            357899999999999999999998

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01864 Rab19 Rab19 subfamily

Probab=98.09  E-value=2e-05  Score=68.47  Aligned_cols=99  Identities=12%  Similarity=-0.002  Sum_probs=64.4

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      -..|||.. .....+..+..+|++++|+|+..+.+-..  ..+..+    ..+.|+++|.||+|+.....  .+...+..
T Consensus        57 ~D~~G~~~-~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  135 (165)
T cd01864          57 WDTAGQER-FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLA  135 (165)
T ss_pred             EECCChHH-HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence            36899843 23334567889999999999987643211  122222    23578999999999975421  12222222


Q ss_pred             hhCC-CcEEEEecCCccCHHHHHHHHHHH
Q 017187           98 DSCK-QDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        98 ~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      +..+ ..++.+||+++.|++++++.+.+.
T Consensus       136 ~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         136 EKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             HHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            2333 357899999999999999887653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.09  E-value=1.1e-05  Score=71.88  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=37.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ....+++++|.+|||||||+|.+.+           .+.+.+.+..+.+.  ..+.+. +..+.++||||..
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~~~D~~G~~   72 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKN-----------DRLAQHQPTQHPTS--EELAIG-NIKFTTFDLGGHQ   72 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhc-----------CCCcccCCccccce--EEEEEC-CEEEEEEECCCCH
Confidence            4568899999999999999999986           12222222222222  122222 2357899999974

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00099 rab6; Provisional

Probab=98.09  E-value=1.5e-05  Score=70.99  Aligned_cols=101  Identities=16%  Similarity=0.081  Sum_probs=66.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~   98 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+-.+  ..+...    ....|+++|.||+||....  ...+...+..
T Consensus        35 Dt~G~e~-~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~  113 (176)
T PTZ00099         35 DTAGQER-FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQ  113 (176)
T ss_pred             ECCChHH-hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence            3677743 33334457899999999999876533211  222222    1356789999999996421  1222233333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+..++.+||+++.|++++++++.+.+++
T Consensus       114 ~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        114 EYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            345567889999999999999999888765

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.09  E-value=1.5e-05  Score=72.74  Aligned_cols=92  Identities=24%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCC-CCEEEEEEcCCCCChhh--H----HHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSA-KRRVIALNKKDLANPNI--L----NKWVR   95 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~-kp~IiVlNK~DL~~~~~--~----~~~~~   95 (375)
                      +-.-|||.. ....+...+..+|++|+|+|+..+..........+  ..+ +++|+|+||+|+.....  .    .+..+
T Consensus        81 liDTpG~~~-~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~  159 (208)
T cd04166          81 IADTPGHEQ-YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA  159 (208)
T ss_pred             EEECCcHHH-HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence            345899853 33456677899999999999987754433222222  223 45677899999974221  1    12222


Q ss_pred             HHhhCC---CcEEEEecCCccCHHH
Q 017187           96 HFDSCK---QDYIAINAHSRSSVQK  117 (375)
Q Consensus        96 ~~~~~g---~~vi~iSa~~~~gvk~  117 (375)
                      .+...+   .+++++||+++.|+.+
T Consensus       160 ~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         160 FAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHcCCCCceEEEEeCCCCCCCcc
Confidence            222333   3589999999998765

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01862 Rab7 Rab7 subfamily

Probab=98.09  E-value=7.5e-06  Score=71.23  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|+|.+
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~   22 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVN   22 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3799999999999999999986

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.08  E-value=1.6e-05  Score=68.71  Aligned_cols=100  Identities=11%  Similarity=0.023  Sum_probs=64.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+..- .......++.+|.+++|+|+..+.+-.+     ..+.+.  ..+.|+++|.||+|+.+...  .+...++.
T Consensus        54 Dt~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~  132 (164)
T smart00173       54 DTAGQEEF-SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA  132 (164)
T ss_pred             ECCCcccc-hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH
Confidence            36776432 1222356789999999999986533211     111111  23679999999999975321  12222233


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +..+.+++.+||+++.|++++++.+.+.+.
T Consensus       133 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      133 RQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             HHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            344567899999999999999999876553

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.08  E-value=2.5e-05  Score=79.51  Aligned_cols=110  Identities=13%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             HHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCC-CC---CCchhHhhc-----cCC
Q 017187            6 IIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIP-LS---SAHPGLQPQ-----LSA   72 (375)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p-~s---~~~~~l~~~-----~~~   72 (375)
                      -..||+++......+...+    +-.-||| .+.++.+...+..+|.+|+|+|+... +.   ....+..+.     ..+
T Consensus        66 Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g  144 (447)
T PLN00043         66 ERERGITIDIALWKFETTKYYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG  144 (447)
T ss_pred             HHhcCceEEEEEEEecCCCEEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC
Confidence            3467777666666655544    3458999 45667788889999999999999863 11   011222222     235


Q ss_pred             CC-EEEEEEcCCCCChh--------hHHHHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187           73 KR-RVIALNKKDLANPN--------ILNKWVRHFDSCK-----QDYIAINAHSRSSVQ  116 (375)
Q Consensus        73 kp-~IiVlNK~DL~~~~--------~~~~~~~~~~~~g-----~~vi~iSa~~~~gvk  116 (375)
                      .| +|+++||+|+.+..        ..++..+++++.|     .+++++|+.++.++.
T Consensus       145 i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        145 VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            64 67789999987321        1233444554444     468999999998864

>cd04110 Rab35 Rab35 subfamily

Probab=98.08  E-value=1.7e-05  Score=71.70  Aligned_cols=101  Identities=14%  Similarity=0.017  Sum_probs=67.7

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      -.+||+... .......+..+|.+++|+|+..+.+-..  ..+..+   ....|+++|.||+|+.+...  .+...++.+
T Consensus        60 ~D~~G~~~~-~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~  138 (199)
T cd04110          60 WDTAGQERF-RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG  138 (199)
T ss_pred             EeCCCchhH-HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence            358887532 2223456789999999999976543211  112211   34578999999999975422  223333333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..+..++.+|++++.|++++++++...+.
T Consensus       139 ~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~  167 (199)
T cd04110         139 QMGISLFETSAKENINVEEMFNCITELVL  167 (199)
T ss_pred             HcCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence            45678899999999999999999877653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.08  E-value=3.3e-05  Score=81.27  Aligned_cols=123  Identities=12%  Similarity=0.133  Sum_probs=80.5

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh---hHHHHHHHHh--
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN---ILNKWVRHFD--   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~--   98 (375)
                      -.-|||.. -...+...++.+|.+++|+|+..........+...  ..+.|+|+|+||+|+....   ...+..+.+.  
T Consensus        69 IDTPGh~D-F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~  147 (594)
T TIGR01394        69 VDTPGHAD-FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL  147 (594)
T ss_pred             EECCCHHH-HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh
Confidence            34799954 44567788999999999999986543322222222  3578999999999996432   2334444442  


Q ss_pred             -----hCCCcEEEEecCCcc----------CHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChH
Q 017187           99 -----SCKQDYIAINAHSRS----------SVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKS  149 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~----------gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKS  149 (375)
                           +..++++++|++++.          ++..|++.+.+.++... ....++++.|.-   .+.+|+-
T Consensus       148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv  217 (594)
T TIGR01394       148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRI  217 (594)
T ss_pred             ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceE
Confidence                 123578899999885          79999999988887541 223455555543   2556653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.07  E-value=5.3e-06  Score=83.96  Aligned_cols=72  Identities=29%  Similarity=0.330  Sum_probs=45.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh-hhcccccc----------cccc--ccccc------CCCCCeeeeeEEEEEc-cC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ-IALSRFPV----------QEKT--KRATV------GPLPGVTQDIAGFKIA-HR  192 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~----------~~k~--~~~~v------~~~pg~T~~~~~~~i~-~~  192 (375)
                      ...++++++|.+|+|||||+|+|+. .|.+....          .|+.  +-+.+      ...+|+|++.....+. .+
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            5678999999999999999999985 22221100          0110  00001      1268999998754443 23


Q ss_pred             CcEEEEEcCCCC
Q 017187          193 PSIYVLDTPGVL  204 (375)
Q Consensus       193 ~~~~liDTPGi~  204 (375)
                      ..+.++||||..
T Consensus        84 ~~i~liDtpG~~   95 (425)
T PRK12317         84 YYFTIVDCPGHR   95 (425)
T ss_pred             eEEEEEECCCcc
Confidence            368899999964

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=1.1e-05  Score=77.48  Aligned_cols=121  Identities=21%  Similarity=0.242  Sum_probs=80.5

Q ss_pred             HHhcccccceEEeeCCCcccc----cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC---CCCchhHhhccCCCCEEEEE
Q 017187            7 IKKGLGLGEMGFTKGGGNINW----FPGHMAAATRAIKHRLKISDLVIEVRDSRIPL---SSAHPGLQPQLSAKRRVIAL   79 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~~~w----fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~---s~~~~~l~~~~~~kp~IiVl   79 (375)
                      =+|||+++.+++.+..++++|    .||| +..++.|.--.++-|..|+|+.|.+..   +.+...|.+..+-+.+++.+
T Consensus        99 kaRGITIn~aHveYeTa~RhYaH~DCPGH-ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfi  177 (449)
T KOG0460|consen   99 KARGITINAAHVEYETAKRHYAHTDCPGH-ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFI  177 (449)
T ss_pred             hhccceEeeeeeeeeccccccccCCCCch-HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEE
Confidence            479999999999999999877    9999 677888888889999999999987633   32323344434444556667


Q ss_pred             EcCCCCC-hhhHH----HHHHHHhhCC-----CcEEEEecC---Cc-------cCHHHHHHHHHHHHhh
Q 017187           80 NKKDLAN-PNILN----KWVRHFDSCK-----QDYIAINAH---SR-------SSVQKLLELVELKLKE  128 (375)
Q Consensus        80 NK~DL~~-~~~~~----~~~~~~~~~g-----~~vi~iSa~---~~-------~gvk~Ll~~L~~~l~~  128 (375)
                      ||.|+++ ++.++    +..+.+.+.|     .+++.-||.   .+       ..+.+|++.+..+++.
T Consensus       178 NKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~  246 (449)
T KOG0460|consen  178 NKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT  246 (449)
T ss_pred             ecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence            9999994 44322    1222232222     266665653   22       2356677777666654

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.07  E-value=6.8e-06  Score=70.81  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      +++++|.+|||||||+|.+.+           .......+..|.+..  .........+.++||||..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~-----------~~~~~~~~t~~~~~~--~~~~~~~~~l~i~D~~G~~   55 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKH-----------AELVTTIPTVGFNVE--MLQLEKHLSLTVWDVGGQE   55 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc-----------CCcccccCccCcceE--EEEeCCceEEEEEECCCCH
Confidence            478999999999999999996           122222333333322  2223333358899999974

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.07  E-value=2.3e-05  Score=67.72  Aligned_cols=98  Identities=13%  Similarity=0.036  Sum_probs=63.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc---cCCCCEEEEEEcCCCCChhhHH--HHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ---LSAKRRVIALNKKDLANPNILN--KWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~---~~~kp~IiVlNK~DL~~~~~~~--~~~~~~~~   99 (375)
                      ..||+.. ...-....++++|++++|+|...+.+-.  ...+..+   ..+.|+++|.||+|+.+.....  ....+-..
T Consensus        58 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  136 (164)
T cd04101          58 DSAGQEL-YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA  136 (164)
T ss_pred             ECCCHHH-HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence            4677632 2233456789999999999987653221  1112222   2358999999999997543221  11122223


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .+.+++.+|++++.|++++++.+.+.
T Consensus       137 ~~~~~~~~Sa~~~~gi~~l~~~l~~~  162 (164)
T cd04101         137 NQLKFFKTSALRGVGYEEPFESLARA  162 (164)
T ss_pred             cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence            45678899999999999999888654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.06  E-value=2e-05  Score=70.34  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD--   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~--   98 (375)
                      .||+- +........+..+|++|+|+|+..+.+-  ....+.+.     ....|+++|.||+|+.......+....+.  
T Consensus        68 ~~G~~-~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~  146 (182)
T PTZ00133         68 VGGQD-KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLH  146 (182)
T ss_pred             CCCCH-hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC
Confidence            68873 2222334568999999999999754321  11122222     23579999999999965332223333331  


Q ss_pred             ---hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 ---SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                         .....++.+||+++.|++++++++.+.+..
T Consensus       147 ~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        147 SVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             cccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence               111234568999999999999999876543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.06  E-value=1.9e-05  Score=71.30  Aligned_cols=101  Identities=11%  Similarity=0.032  Sum_probs=66.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc-----cCCCCEEEEEEcCCCCCh--hhHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ-----LSAKRRVIALNKKDLANP--NILNKWV   94 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~-----~~~kp~IiVlNK~DL~~~--~~~~~~~   94 (375)
                      ..||+.. ........++++|++|+|+|...+.+-.+     ..+.+.     ....|+++|.||+||.+.  ...++..
T Consensus        56 Dt~G~~~-~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~  134 (201)
T cd04107          56 DIAGQER-FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMD  134 (201)
T ss_pred             ECCCchh-hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHH
Confidence            3788732 22223456899999999999987644221     112111     145799999999999732  2222333


Q ss_pred             HHHhhCC-CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           95 RHFDSCK-QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        95 ~~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.+..+ ..++.+||+++.|++++++++.+.+..
T Consensus       135 ~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         135 QFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             HHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4444445 478999999999999999998776543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.05  E-value=1e-05  Score=70.61  Aligned_cols=20  Identities=50%  Similarity=0.602  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      |+|+|..++|||||||+|++
T Consensus         1 V~v~G~~ssGKSTliNaLlG   20 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLG   20 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEcCCCCCHHHHHHHHHh
Confidence            68999999999999999997

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.05  E-value=2.5e-06  Score=74.42  Aligned_cols=77  Identities=19%  Similarity=0.167  Sum_probs=54.0

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~  120 (375)
                      .+.|+||.|+||+..  .++..+ .++ ..++|+++|+||+|++.+....-..+.+ +..+.+++++|++++.|+++|++
T Consensus        77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~  154 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD  154 (156)
T ss_dssp             TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred             cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence            689999999999753  222222 222 4689999999999998664432112222 23478999999999999999987


Q ss_pred             HH
Q 017187          121 LV  122 (375)
Q Consensus       121 ~L  122 (375)
                      .+
T Consensus       155 ~I  156 (156)
T PF02421_consen  155 AI  156 (156)
T ss_dssp             HH
T ss_pred             hC
Confidence            64

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.05  E-value=7e-06  Score=71.23  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=34.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeee--eEEEEEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD--IAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~--~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      +|+++|.+|||||||+|.|.+.-.        .........+..|..  ...+.+. +..+.++||||...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~--------~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~   62 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFS--------KYKGLPPSKITPTVGLNIGTIEVG-NARLKFWDLGGQES   62 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcc--------cccCCcccccCCccccceEEEEEC-CEEEEEEECCCChh
Confidence            488999999999999999985100        000011111122322  2233333 34588999999753

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.05  E-value=1.1e-05  Score=69.13  Aligned_cols=22  Identities=45%  Similarity=0.539  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||||||||+|++.+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999996

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.04  E-value=2.7e-05  Score=67.20  Aligned_cols=99  Identities=15%  Similarity=0.023  Sum_probs=65.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~   98 (375)
                      ..||+... .......++.+|++++|+|+..+.+-..  ..+..+    ....|+++|.||+|+.+..  ..+...++.+
T Consensus        56 D~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~  134 (163)
T cd01860          56 DTAGQERY-RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD  134 (163)
T ss_pred             eCCchHHH-HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHH
Confidence            48887532 2223356788999999999986532211  111222    1357899999999987422  2223334444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ..+..++.+|++++.|++++++++.+.+
T Consensus       135 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         135 ENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567889999999999999999987654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.04  E-value=1e-05  Score=70.38  Aligned_cols=100  Identities=12%  Similarity=0.044  Sum_probs=64.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhcc---CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQL---SAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~~---~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      ..||+...........+..+|++|+|+|+..+.+-.+     ..+.+..   .+.|+++|.||+|+.....  .+...++
T Consensus        53 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  132 (165)
T cd04146          53 DTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL  132 (165)
T ss_pred             ECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH
Confidence            3688763222234567889999999999976533211     1112211   2689999999999864321  1222223


Q ss_pred             HhhCCCcEEEEecCCc-cCHHHHHHHHHHHH
Q 017187           97 FDSCKQDYIAINAHSR-SSVQKLLELVELKL  126 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~-~gvk~Ll~~L~~~l  126 (375)
                      .+..+.+++.+|++++ .|++++++.+.+.+
T Consensus       133 ~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         133 ASELGCLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             HHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            3344567889999998 48999998887654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04113 Rab4 Rab4 subfamily

Probab=98.04  E-value=2.3e-05  Score=67.64  Aligned_cols=97  Identities=13%  Similarity=0.002  Sum_probs=66.3

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..|||- +........++++|.+|+|+|+..+.+..+  ..+...    ..+.|+++|.||+|+.....  .+....+.+
T Consensus        55 D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~  133 (161)
T cd04113          55 DTAGQE-RFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ  133 (161)
T ss_pred             ECcchH-HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH
Confidence            588883 333344566889999999999987543221  112211    24689999999999975322  223333444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      ..+..++.+|++++.|++++++.+.+
T Consensus       134 ~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         134 ENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             HcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            55678999999999999999988764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.04  E-value=5.3e-05  Score=62.94  Aligned_cols=87  Identities=21%  Similarity=0.242  Sum_probs=69.0

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccCH
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSSV  115 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~gv  115 (375)
                      ..+.-...++|++++|..+.+|.+...+.+.... .+|+|-|++|+||+....+....+++.+.|. +++.+|+.+..|+
T Consensus        56 ~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv  134 (148)
T COG4917          56 HALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGV  134 (148)
T ss_pred             HHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence            4455667899999999999999888777776644 4669999999999966566555556665564 6788899999999


Q ss_pred             HHHHHHHHH
Q 017187          116 QKLLELVEL  124 (375)
Q Consensus       116 k~Ll~~L~~  124 (375)
                      ++|+.+|..
T Consensus       135 ~~l~~~L~~  143 (148)
T COG4917         135 EELVDYLAS  143 (148)
T ss_pred             HHHHHHHHh
Confidence            999888754

>TIGR00092 GTP-binding protein YchF

Probab=98.03  E-value=6.9e-06  Score=80.98  Aligned_cols=60  Identities=23%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC----------------CcEEE
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR----------------PSIYV  197 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~----------------~~~~l  197 (375)
                      +++++||.||||||||+|+|.+           .+...+++.|.+|.++..  +.+...                ..+.+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~-----------~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~   71 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTN-----------LLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF   71 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhC-----------CCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence            5789999999999999999997           222277788888887752  322221                14789


Q ss_pred             EEcCCCCCC
Q 017187          198 LDTPGVLVP  206 (375)
Q Consensus       198 iDTPGi~~~  206 (375)
                      +|.||+..-
T Consensus        72 ~DiaGlv~g   80 (368)
T TIGR00092        72 VDIAGLVGG   80 (368)
T ss_pred             Eeccccccc
Confidence            999999763

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.03  E-value=3.6e-05  Score=67.16  Aligned_cols=97  Identities=12%  Similarity=0.020  Sum_probs=66.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--------cCCCCEEEEEEcCCCCChh--hHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--------LSAKRRVIALNKKDLANPN--ILNKWVRH   96 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--------~~~kp~IiVlNK~DL~~~~--~~~~~~~~   96 (375)
                      ..||+.. ........++++|++|+|+|+..+.+-  ..+.++        ..+.|+++|.||+|+.+..  ..+...++
T Consensus        58 D~~g~~~-~~~~~~~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  134 (167)
T cd01867          58 DTAGQER-FRTITTAYYRGAMGIILVYDITDEKSF--ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL  134 (167)
T ss_pred             eCCchHH-HHHHHHHHhCCCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence            4688753 223344678999999999998765331  122222        2357999999999997432  22233333


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      .+..+.+++.+||+++.|++++++.+.+.+
T Consensus       135 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         135 ADEYGIKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            334456789999999999999999887765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=98.03  E-value=1.2e-05  Score=70.05  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|.+.+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~   23 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYAD   23 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999996

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04121 Rab40 Rab40 subfamily

Probab=98.03  E-value=2.2e-05  Score=70.74  Aligned_cols=99  Identities=8%  Similarity=-0.009  Sum_probs=66.0

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--h---HhhccCCCCEEEEEEcCCCCChh--hHHHHHHHHhhC
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--G---LQPQLSAKRRVIALNKKDLANPN--ILNKWVRHFDSC  100 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~---l~~~~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~  100 (375)
                      .+|+- +...-....+..+|++|+|+|...+.+-.+-  .   +.+...+.|+|+|.||+||....  ..++..++.+..
T Consensus        62 t~G~~-~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~  140 (189)
T cd04121          62 TSGQG-RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN  140 (189)
T ss_pred             CCCcH-HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc
Confidence            46653 2222233557899999999999876543221  1   22223568999999999996421  122333333445


Q ss_pred             CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          101 KQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       101 g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +..++.+||+++.|++++++++.+.+.
T Consensus       141 ~~~~~e~SAk~g~~V~~~F~~l~~~i~  167 (189)
T cd04121         141 GMTFFEVSPLCNFNITESFTELARIVL  167 (189)
T ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999876554

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.03  E-value=7.7e-06  Score=70.38  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      +++++|.+|||||||+|++.+.           ......+..|.+..  .+.+. ...+.++||||...
T Consensus         1 ki~iiG~~~~GKssli~~~~~~-----------~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~G~~~   55 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLG-----------EVVTTIPTIGFNVE--TVEYK-NVSFTVWDVGGQDK   55 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC-----------CCCCCCCCcCcceE--EEEEC-CEEEEEEECCCChh
Confidence            4789999999999999999972           11222233333332  22222 23589999999654

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.02  E-value=6.9e-06  Score=71.70  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.||||||||+|+|.+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~   23 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQG   23 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            699999999999999999986

>cd01866 Rab2 Rab2 subfamily

Probab=98.02  E-value=3.3e-05  Score=67.46  Aligned_cols=99  Identities=13%  Similarity=0.015  Sum_probs=65.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+-. -.......++++|++++|+|+..+.+-.+  ..+.+.    ..+.|+++|.||+|+.++..  .+...++..
T Consensus        59 Dt~G~~~-~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~  137 (168)
T cd01866          59 DTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAK  137 (168)
T ss_pred             ECCCcHH-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH
Confidence            4688632 22224567789999999999986433211  112111    24689999999999974322  222333444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +.+..++.+|++++.|+++++..+.+.+
T Consensus       138 ~~~~~~~e~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         138 EHGLIFMETSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5567889999999999999998887655

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04123 Rab21 Rab21 subfamily

Probab=98.02  E-value=3e-05  Score=66.45  Aligned_cols=98  Identities=16%  Similarity=0.011  Sum_probs=63.3

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+-. -.......+.++|.+++|+|+..+.+-..  .   .+... ..++|+++|+||+|+.....  .+...++.+
T Consensus        55 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~  133 (162)
T cd04123          55 DTAGQER-YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK  133 (162)
T ss_pred             ECCchHH-HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence            3666522 11222345689999999999876532111  1   11122 23589999999999975332  223334444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      ..+..++.+|++++.|++++++++.+.
T Consensus       134 ~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123         134 SVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            456778999999999999999998654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04122 Rab14 Rab14 subfamily

Probab=98.02  E-value=2.6e-05  Score=67.91  Aligned_cols=99  Identities=13%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+... .......++++|.+|+|+|...+.+-.+  ..+...    ..+.|+++|.||+|+.....  .+...++.+
T Consensus        57 Dt~G~~~~-~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~  135 (166)
T cd04122          57 DTAGQERF-RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD  135 (166)
T ss_pred             ECCCcHHH-HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHH
Confidence            47887542 2233567899999999999987643211  111111    23578999999999975422  122223333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +.+..++.+||+++.|+++++..+...+
T Consensus       136 ~~~~~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         136 ENGLLFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999887776543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.02  E-value=1.7e-05  Score=78.67  Aligned_cols=75  Identities=19%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhh---ccccc-ccccccccccCCCCC---eeeeeEE-----EEEccC----CcEE
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIA---LSRFP-VQEKTKRATVGPLPG---VTQDIAG-----FKIAHR----PSIY  196 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g---~~~~~-~~~k~~~~~v~~~pg---~T~~~~~-----~~i~~~----~~~~  196 (375)
                      ...+.++|+|..|+|||||||++.+.-   .++.. .+.+.+---+++.+|   +|.++..     +.+...    .++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            567899999999999999999999831   11100 011112225788899   8877642     333322    4699


Q ss_pred             EEEcCCCCCCC
Q 017187          197 VLDTPGVLVPS  207 (375)
Q Consensus       197 liDTPGi~~~~  207 (375)
                      ++||+|+...+
T Consensus        95 lIDcvG~~v~G  105 (492)
T TIGR02836        95 LVDCVGYTVKG  105 (492)
T ss_pred             EEECCCcccCC
Confidence            99999997754

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.02  E-value=1.3e-05  Score=69.07  Aligned_cols=22  Identities=45%  Similarity=0.671  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|.+.+
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~   22 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVK   22 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3699999999999999999986

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04118 Rab24 Rab24 subfamily

Probab=98.02  E-value=1.1e-05  Score=72.13  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||||||||+|++..
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~   22 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVH   22 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999999986

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=3.2e-05  Score=73.02  Aligned_cols=119  Identities=18%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             HhcccccceEEeeCCCcccc----cchhHHHHHHHHHHHhhhcCeEEEEEeCCCC---CCCCchhHhhccCCCCE-EEEE
Q 017187            8 KKGLGLGEMGFTKGGGNINW----FPGHMAAATRAIKHRLKISDLVIEVRDSRIP---LSSAHPGLQPQLSAKRR-VIAL   79 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~~~w----fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p---~s~~~~~l~~~~~~kp~-IiVl   79 (375)
                      .|||+++.++..+...+++|    .||| +..++.|.--..+.|-.|+|+.|.+.   .+.+...+.+ .-+.|. ++++
T Consensus        58 ~rGITIntahveyet~~rhyahVDcPGH-aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlar-qvGvp~ivvfl  135 (394)
T COG0050          58 ARGITINTAHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLAR-QVGVPYIVVFL  135 (394)
T ss_pred             hcCceeccceeEEecCCceEEeccCCCh-HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhh-hcCCcEEEEEE
Confidence            68999999999999999877    9999 67888888999999999999998763   2223223333 335655 5557


Q ss_pred             EcCCCCChhhHHH-----HHHHHhhCCC-----cEEEEecCCc--------cCHHHHHHHHHHHHhh
Q 017187           80 NKKDLANPNILNK-----WVRHFDSCKQ-----DYIAINAHSR--------SSVQKLLELVELKLKE  128 (375)
Q Consensus        80 NK~DL~~~~~~~~-----~~~~~~~~g~-----~vi~iSa~~~--------~gvk~Ll~~L~~~l~~  128 (375)
                      ||+|+++...+.+     ..+.+...++     +++.-|+...        ..+.+|++.+..+++.
T Consensus       136 nK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         136 NKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             ecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence            9999997433222     2223322222     4555555321        1245666666666554

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.02  E-value=1.3e-05  Score=70.59  Aligned_cols=57  Identities=18%  Similarity=0.254  Sum_probs=37.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ...+++++|.+|||||||+|.|..           ++.....+..|.+.  ..+... .-.+.++||||..
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~l~D~~G~~   70 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLL-----------GEVVHTSPTIGSNV--EEIVYK-NIRFLMWDIGGQE   70 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHcc-----------CCCCCcCCccccce--EEEEEC-CeEEEEEECCCCH
Confidence            457899999999999999999985           11122333334332  223332 2358899999974

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.02  E-value=6.6e-06  Score=73.00  Aligned_cols=85  Identities=21%  Similarity=0.148  Sum_probs=59.4

Q ss_pred             HHhhhcCeEEEEEeCCCCCC--CCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh------hCCCcEEEE
Q 017187           41 HRLKISDLVIEVRDSRIPLS--SAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD------SCKQDYIAI  107 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s--~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~------~~g~~vi~i  107 (375)
                      ..++++|.||+|+|+.++..  .....+.++     ..++|+++++||+|+.+.....+....+.      .....++.+
T Consensus        77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~  156 (175)
T PF00025_consen   77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC  156 (175)
T ss_dssp             GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred             eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence            45789999999999976421  111122222     35689999999999876544444444442      233467889


Q ss_pred             ecCCccCHHHHHHHHHHH
Q 017187          108 NAHSRSSVQKLLELVELK  125 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~~  125 (375)
                      |+.++.|+.+.++||.+.
T Consensus       157 sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  157 SAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             BTTTTBTHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHhc
Confidence            999999999999999765

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.01  E-value=2.7e-05  Score=68.99  Aligned_cols=71  Identities=15%  Similarity=0.107  Sum_probs=51.1

Q ss_pred             hcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHHhhCC--CcEEEEecCCccCH
Q 017187           45 ISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHFDSCK--QDYIAINAHSRSSV  115 (375)
Q Consensus        45 ~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g--~~vi~iSa~~~~gv  115 (375)
                      .+|.+++|+|++.+++..+..+.+.  ..++|+++|+||+|+.+...    .+++.+.+...+  .+++++||+++.|+
T Consensus       100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi  178 (179)
T TIGR03598       100 NLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI  178 (179)
T ss_pred             hhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence            5689999999988777655444343  35689999999999986543    233444554332  37999999999986

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04109 Rab28 Rab28 subfamily

Probab=98.01  E-value=2.9e-05  Score=71.05  Aligned_cols=102  Identities=17%  Similarity=0.132  Sum_probs=65.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhcc----CCCCEEEEEEcCCCCChh-hH-HHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQL----SAKRRVIALNKKDLANPN-IL-NKWV   94 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~~----~~kp~IiVlNK~DL~~~~-~~-~~~~   94 (375)
                      -..||+- ....-....+..+|++|+|+|+..+.+-.+     ..+.+..    ...|+++|.||+||.... .. +...
T Consensus        55 ~Dt~G~~-~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~  133 (215)
T cd04109          55 WDIGGQS-IGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA  133 (215)
T ss_pred             EECCCcH-HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH
Confidence            3467763 333334456889999999999987643221     1111211    124688999999997432 11 1222


Q ss_pred             HHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           95 RHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        95 ~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.+..+...+.+||+++.|++++++++.+.+..
T Consensus       134 ~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         134 RFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2223345678899999999999999998776643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04114 Rab30 Rab30 subfamily

Probab=98.01  E-value=2.5e-05  Score=67.83  Aligned_cols=98  Identities=16%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc-cCCCCEEEEEEcCCCCChhh-HHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ-LSAKRRVIALNKKDLANPNI-LNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~-~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~-   98 (375)
                      .+|||.. ........+..+|++++|+|++.+.+...  ..+   ... ..+.|.++|.||+|+.++.. .....+.+. 
T Consensus        62 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~  140 (169)
T cd04114          62 DTAGQER-FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD  140 (169)
T ss_pred             ECCCcHH-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence            5788743 33334678899999999999876533211  111   111 23578899999999975432 223333332 


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .....++.+|++++.|++++++.+.+.
T Consensus       141 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         141 AQDMYYLETSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             HcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            233568899999999999999988654

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01893 Miro1 Miro1 subfamily

Probab=98.01  E-value=1.9e-05  Score=68.89  Aligned_cols=99  Identities=8%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH----hhccCCCCEEEEEEcCCCCChhhH---HHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL----QPQLSAKRRVIALNKKDLANPNIL---NKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l----~~~~~~kp~IiVlNK~DL~~~~~~---~~~~~~~   97 (375)
                      ..||+-. ....+...+..+|++++|+|+..+.+-..  ..+    .....+.|+++|.||+|+.+....   +.....+
T Consensus        53 Dt~G~~~-~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~  131 (166)
T cd01893          53 DTSSRPQ-DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPI  131 (166)
T ss_pred             eCCCchh-hhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHH
Confidence            4577642 23344566799999999999987654332  111    111346899999999999764321   2222111


Q ss_pred             -hhC-C-CcEEEEecCCccCHHHHHHHHHHHH
Q 017187           98 -DSC-K-QDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        98 -~~~-g-~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                       .+. . ..++.+||+++.|++++.+.+.+.+
T Consensus       132 ~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         132 MNEFREIETCVECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             HHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence             111 1 3688999999999999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.01  E-value=1e-05  Score=68.76  Aligned_cols=20  Identities=40%  Similarity=0.712  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      |+++|.+|||||||+|+|.+
T Consensus         2 i~i~G~~~~GKssl~~~l~~   21 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAG   21 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHcc
Confidence            78999999999999999997

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.00  E-value=1.1e-05  Score=72.52  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh-hccccccccccccc---ccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTKRA---TVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~~~---~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~  205 (375)
                      +|+++|.+|||||||+|+|... +.......-.....   ......|+|.......+. ....+.++||||...
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~   77 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD   77 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence            7999999999999999999862 11110000000000   001224566554432232 223588999999854

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01868 Rab11_like Rab11-like

Probab=98.00  E-value=3.3e-05  Score=66.90  Aligned_cols=98  Identities=12%  Similarity=-0.003  Sum_probs=63.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-CCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-SAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+-. -.......++.+|.+|+|+|+..+.+..+  ..+..+   . .+.|+++|.||+|+.....  .+...++..
T Consensus        58 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~  136 (165)
T cd01868          58 DTAGQER-YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE  136 (165)
T ss_pred             eCCChHH-HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH
Confidence            4677632 22223456789999999999986543221  111211   1 2579999999999975321  223333333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      ..+..++.+||+++.|++++++.+...
T Consensus       137 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         137 KNGLSFIETSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             HcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            446678999999999999999988654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.00  E-value=6.3e-05  Score=76.51  Aligned_cols=89  Identities=25%  Similarity=0.263  Sum_probs=62.0

Q ss_pred             HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187           35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRS  113 (375)
Q Consensus        35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~  113 (375)
                      ++++....++++|++++|+|+..+.+..+..+... ..++|+++|+||+|+.+.+ .+.+   .+..+.+++.+|+++ .
T Consensus       272 gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~-~~~~---~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       272 GIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINS-LEFF---VSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcc-hhhh---hhhcCCceEEEEEec-C
Confidence            44556678899999999999988765443333333 2478999999999997542 2222   123345678899997 5


Q ss_pred             CHHHHHHHHHHHHhh
Q 017187          114 SVQKLLELVELKLKE  128 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~  128 (375)
                      |++++++.+.+.+.+
T Consensus       347 gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       347 KIKALVDLLTQKINA  361 (442)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            888888877766543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04157 Arl6 Arl6 subfamily

Probab=98.00  E-value=9e-06  Score=70.01  Aligned_cols=56  Identities=25%  Similarity=0.420  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      +|+++|.+|||||||+|.|.+..         .......+..|.+..  .+. ...-.+.++||||..
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~---------~~~~~~~~t~g~~~~--~~~-~~~~~~~l~Dt~G~~   56 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPEN---------AQSQIIVPTVGFNVE--SFE-KGNLSFTAFDMSGQG   56 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccC---------CCcceecCccccceE--EEE-ECCEEEEEEECCCCH
Confidence            48899999999999999998610         012233344454332  121 122247899999975

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01892 Miro2 Miro2 subfamily

Probab=97.99  E-value=7.5e-06  Score=72.00  Aligned_cols=86  Identities=15%  Similarity=0.039  Sum_probs=55.9

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCC-cEEEEecCCcc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQ-DYIAINAHSRS  113 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~-~vi~iSa~~~~  113 (375)
                      ..++++|++|+|+|+..+.+-.+  ..+...  ..+.|+++|+||+||.+....  ....++.+..+. .++.+||+++.
T Consensus        73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (169)
T cd01892          73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD  152 (169)
T ss_pred             hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence            45789999999999977633221  111112  236899999999999643211  111122222333 35889999999


Q ss_pred             CHHHHHHHHHHHH
Q 017187          114 SVQKLLELVELKL  126 (375)
Q Consensus       114 gvk~Ll~~L~~~l  126 (375)
                      |++++++.+.+.+
T Consensus       153 ~v~~lf~~l~~~~  165 (169)
T cd01892         153 SSNELFTKLATAA  165 (169)
T ss_pred             cHHHHHHHHHHHh
Confidence            9999998887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=97.99  E-value=3.5e-05  Score=65.83  Aligned_cols=99  Identities=14%  Similarity=0.008  Sum_probs=65.8

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhcc--CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQL--SAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~~--~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      -.+|||... .......++.+|++++|+|...+.+..+  .   .+.+..  ...|+++|+||+|+.+...  .+...++
T Consensus        52 ~D~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  130 (160)
T cd00876          52 LDTAGQEEF-SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKAL  130 (160)
T ss_pred             EECCChHHH-HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHH
Confidence            348888642 2234467889999999999876432211  1   111111  3689999999999986321  2233333


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      ....+.+++.+|++++.|++++++++.+.
T Consensus       131 ~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         131 AKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             HHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            33445688999999999999999988653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04116 Rab9 Rab9 subfamily

Probab=97.99  E-value=1.6e-05  Score=69.38  Aligned_cols=24  Identities=38%  Similarity=0.513  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++++|.+|||||||+|.+..
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~   27 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVT   27 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHc
Confidence            457999999999999999999985

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.99  E-value=1.2e-05  Score=69.55  Aligned_cols=21  Identities=43%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.||||||||+|++.+
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999986

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04142 RRP22 RRP22 subfamily

Probab=97.99  E-value=1.2e-05  Score=72.97  Aligned_cols=58  Identities=22%  Similarity=0.402  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ++|+|+|.||||||||+|.+.+           ..... ...|.++.+..  .+.+.+. -.+.++||||...
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~-----------~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~   61 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLA-----------QEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR   61 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHc-----------CCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence            3799999999999999999986           11111 12333333322  2222221 1367999999854

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04140 ARHI_like ARHI subfamily

Probab=97.99  E-value=1.2e-05  Score=69.94  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|++.+
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~   23 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVK   23 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999986

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.99  E-value=9.4e-06  Score=77.94  Aligned_cols=61  Identities=28%  Similarity=0.435  Sum_probs=46.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-------------cC-----CcE
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-------------HR-----PSI  195 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-------------~~-----~~~  195 (375)
                      ..+.+.+||.|||||||++|+|..            ..+..++.|-+|.++...++.             ..     -.+
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~------------~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l   86 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTK------------SKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFL   86 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhc------------CCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeE
Confidence            456899999999999999999996            335588999999988643321             11     137


Q ss_pred             EEEEcCCCCCC
Q 017187          196 YVLDTPGVLVP  206 (375)
Q Consensus       196 ~liDTPGi~~~  206 (375)
                      .++|..|+..-
T Consensus        87 ~v~DIAGLvkG   97 (391)
T KOG1491|consen   87 TVYDIAGLVKG   97 (391)
T ss_pred             EEEeecccccC
Confidence            89999999753

>PRK04213 GTP-binding protein; Provisional

Probab=97.98  E-value=4.5e-05  Score=68.68  Aligned_cols=86  Identities=15%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             HhhhcCeEEEEEeCCCCCCCC-----------chhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhC------
Q 017187           42 RLKISDLVIEVRDSRIPLSSA-----------HPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFDSC------  100 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~-----------~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~------  100 (375)
                      .+..+|+|++|+|+.......           +..+...  ..++|+++|+||+|+.+..  ..+++.+.+.-.      
T Consensus        87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  166 (201)
T PRK04213         87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW  166 (201)
T ss_pred             hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence            345678999999986432110           0112222  3478999999999997644  233344433210      


Q ss_pred             CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          101 KQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       101 g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.+++++||+++ |+++++++|.+.+.+
T Consensus       167 ~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        167 QDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            125789999999 999999999877654

>cd01863 Rab18 Rab18 subfamily

Probab=97.98  E-value=2.9e-05  Score=66.90  Aligned_cols=98  Identities=17%  Similarity=0.074  Sum_probs=64.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc--cCCCCEEEEEEcCCCCChh-hHHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ--LSAKRRVIALNKKDLANPN-ILNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~--~~~kp~IiVlNK~DL~~~~-~~~~~~~~~~   98 (375)
                      ..||+.. ........++.+|++++|+|+..+.+-..     ..+.++  ..+.|+++|.||+|+.... ..+...++..
T Consensus        55 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~  133 (161)
T cd01863          55 DTAGQER-FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR  133 (161)
T ss_pred             ECCCchh-hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH
Confidence            4677532 22333456789999999999876543211     011122  2467899999999997332 2223333333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      +.+.+++.+|++++.|++++++.+.+.
T Consensus       134 ~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         134 KHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            456779999999999999999887653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04123 Rab21 Rab21 subfamily

Probab=97.98  E-value=1.9e-05  Score=67.73  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|++.+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~   22 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVE   22 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999996

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.98  E-value=7.7e-05  Score=63.88  Aligned_cols=83  Identities=16%  Similarity=0.085  Sum_probs=57.8

Q ss_pred             hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHH----HHHh--hCCCcEEEEecCCccC
Q 017187           43 LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWV----RHFD--SCKQDYIAINAHSRSS  114 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~----~~~~--~~g~~vi~iSa~~~~g  114 (375)
                      -++++.+++|+|+..+.+.....+.++  ..+.|+++|+||+|+..+.......    ..++  ....+++++|++++.+
T Consensus        79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~  158 (170)
T cd01876          79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG  158 (170)
T ss_pred             ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence            356789999999987655444444444  3457999999999997654433222    2221  1234788999999999


Q ss_pred             HHHHHHHHHHH
Q 017187          115 VQKLLELVELK  125 (375)
Q Consensus       115 vk~Ll~~L~~~  125 (375)
                      ++++++++.+.
T Consensus       159 ~~~l~~~l~~~  169 (170)
T cd01876         159 IDELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04124 RabL2 RabL2 subfamily

Probab=97.98  E-value=1.5e-05  Score=69.21  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~   22 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999986

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.98  E-value=7.4e-05  Score=79.49  Aligned_cols=92  Identities=23%  Similarity=0.264  Sum_probs=60.8

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCC--hhhHHHH----HH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLAN--PNILNKW----VR   95 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~--~~~~~~~----~~   95 (375)
                      +-.-|||. +-.+.+...+..+|++++|+|+..+..........+   ...+++|+|+||+|+++  ++..++.    .+
T Consensus       108 liDtPG~~-~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~  186 (632)
T PRK05506        108 VADTPGHE-QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRA  186 (632)
T ss_pred             EEECCChH-HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHH
Confidence            34569995 445667778999999999999987765443322222   33467888999999984  2222222    22


Q ss_pred             HHhhCC---CcEEEEecCCccCHHH
Q 017187           96 HFDSCK---QDYIAINAHSRSSVQK  117 (375)
Q Consensus        96 ~~~~~g---~~vi~iSa~~~~gvk~  117 (375)
                      ++...+   .+++++||+++.|+.+
T Consensus       187 ~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        187 FAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHcCCCCccEEEEecccCCCccc
Confidence            222333   3589999999998763

>cd00879 Sar1 Sar1 subfamily

Probab=97.98  E-value=3e-05  Score=69.05  Aligned_cols=25  Identities=20%  Similarity=0.522  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....+++++|.+|||||||+|.|.+
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999986

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04175 Rap1 Rap1 subgroup

Probab=97.98  E-value=1.6e-05  Score=68.94  Aligned_cols=22  Identities=41%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|++..
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~   23 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQ   23 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999985

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.97  E-value=4.2e-05  Score=77.95  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=68.4

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCchhHhhc--cCCC
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-------SAHPGLQPQ--LSAK   73 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-------~~~~~l~~~--~~~k   73 (375)
                      ..||+.+......+....    +-.-|||. +-.+.+...+..+|++++|+|+..+..       ..-.....+  ..++
T Consensus        67 r~rGiTid~~~~~~~~~~~~i~lIDtPGh~-~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi  145 (446)
T PTZ00141         67 RERGITIDIALWKFETPKYYFTIIDAPGHR-DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGV  145 (446)
T ss_pred             HhcCEeEEeeeEEEccCCeEEEEEECCChH-HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCC
Confidence            456666555555555443    34579995 557788888999999999999987542       111111111  3456


Q ss_pred             C-EEEEEEcCCC--CC--hhhH----HHHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187           74 R-RVIALNKKDL--AN--PNIL----NKWVRHFDSCK-----QDYIAINAHSRSSVQ  116 (375)
Q Consensus        74 p-~IiVlNK~DL--~~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~~~gvk  116 (375)
                      | +|+++||+|.  ++  ++..    ++..+++...+     .+++++|+.++.|+.
T Consensus       146 ~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~  202 (446)
T PTZ00141        146 KQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMI  202 (446)
T ss_pred             CeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcc
Confidence            6 5689999994  32  2222    23334443333     468999999998875

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.97  E-value=3.6e-05  Score=69.45  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=62.8

Q ss_pred             ccchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc--cCCCCEEEEEEcCCCCChhh---HHHHHH
Q 017187           27 WFPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ--LSAKRRVIALNKKDLANPNI---LNKWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~--~~~kp~IiVlNK~DL~~~~~---~~~~~~   95 (375)
                      ..|||...  +.+ ...+..+|++|+|+|+..+.+-...     .+.+.  ..++|+++|+||+|+.+...   .+...+
T Consensus        53 D~~G~~~~--~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~  130 (198)
T cd04147          53 DTSGSYSF--PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALS  130 (198)
T ss_pred             ECCCchhh--hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHH
Confidence            46776432  222 2457899999999998765332211     11111  14689999999999975311   112222


Q ss_pred             HHh-hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           96 HFD-SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        96 ~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ... ..+..++.+|++++.|++++++++.+.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  162 (198)
T cd04147         131 TVELDWNCGFVETSAKDNENVLEVFKELLRQA  162 (198)
T ss_pred             HHHhhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence            222 2345678999999999999999987765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00157 Rho Rho (Ras homology) family

Probab=97.96  E-value=2e-05  Score=68.39  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|+|.+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~   22 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTT   22 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999997

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00369 Ras-like protein; Provisional

Probab=97.95  E-value=3.1e-05  Score=69.31  Aligned_cols=101  Identities=11%  Similarity=0.027  Sum_probs=64.3

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+-. ...-....++.+|++|+|+|+..+.+-.+  .   .+.+.  ..+.|+++|.||+|+.+...  .....++.
T Consensus        59 Dt~G~~~-~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~  137 (189)
T PTZ00369         59 DTAGQEE-YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA  137 (189)
T ss_pred             eCCCCcc-chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence            3677643 22223456789999999999976543111  1   11121  23679999999999864321  11222222


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+.+++.+||+++.|++++++++.+.+..
T Consensus       138 ~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        138 KSFGIPFLETSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             HHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            3345678999999999999999988765543

>cd04149 Arf6 Arf6 subfamily

Probab=97.95  E-value=1.8e-05  Score=69.53  Aligned_cols=57  Identities=16%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ..++|+++|.+|||||||++.|..           ......  .|.++.+...+.. ..-.+.++||||..
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~-----------~~~~~~--~~t~g~~~~~~~~-~~~~~~l~Dt~G~~   64 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKL-----------GQSVTT--IPTVGFNVETVTY-KNVKFNVWDVGGQD   64 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHcc-----------CCCccc--cCCcccceEEEEE-CCEEEEEEECCCCH
Confidence            457899999999999999999975           111111  2222222222222 22358899999974

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04112 Rab26 Rab26 subfamily

Probab=97.95  E-value=1.9e-05  Score=70.82  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|.+..
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~   22 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKD   22 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3699999999999999999986

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.95  E-value=1.7e-05  Score=68.28  Aligned_cols=21  Identities=48%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.||||||||+|++..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999986

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK10218 GTP-binding protein; Provisional

Probab=97.95  E-value=5.8e-05  Score=79.50  Aligned_cols=124  Identities=13%  Similarity=0.091  Sum_probs=80.9

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh---hhHHHHHHHHhh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP---NILNKWVRHFDS   99 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~---~~~~~~~~~~~~   99 (375)
                      +-..|||.. ....+...++.+|.+|+|+|+..........+...  ..++|.++|+||+|+...   ..+++..+.|..
T Consensus        72 liDTPG~~d-f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~  150 (607)
T PRK10218         72 IVDTPGHAD-FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVN  150 (607)
T ss_pred             EEECCCcch-hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhc
Confidence            345799954 34556788999999999999986544333222222  457899999999998642   233445555422


Q ss_pred             -------CCCcEEEEecCCcc----------CHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChH
Q 017187          100 -------CKQDYIAINAHSRS----------SVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKS  149 (375)
Q Consensus       100 -------~g~~vi~iSa~~~~----------gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKS  149 (375)
                             ...+++++|+.++.          ++..|++.+...++... ....+++..|.-   .|.+|+-
T Consensus       151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i  221 (607)
T PRK10218        151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVI  221 (607)
T ss_pred             cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEE
Confidence                   23568999999987          58889988888887542 223344444432   2566663

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.95  E-value=3.1e-05  Score=70.45  Aligned_cols=100  Identities=16%  Similarity=0.048  Sum_probs=65.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hh---HhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PG---LQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCK  101 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g  101 (375)
                      ..+|+-.. ..-....+..+|++|+|+|...+.+..+  .+   +.+...+.|+++|.||+||.......+..++.+..+
T Consensus        50 Dt~G~e~~-~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~  128 (200)
T smart00176       50 DTAGQEKF-GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKN  128 (200)
T ss_pred             ECCCchhh-hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcC
Confidence            36777332 1222346789999999999986543221  11   222235689999999999864322222233333456


Q ss_pred             CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          102 QDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..++.+||+++.|++++++++.+.+.
T Consensus       129 ~~~~e~SAk~~~~v~~~F~~l~~~i~  154 (200)
T smart00176      129 LQYYDISAKSNYNFEKPFLWLARKLI  154 (200)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            78899999999999999999876653

Ran is involved in the active transport of proteins through nuclear pores.

>cd04136 Rap_like Rap-like subfamily

Probab=97.94  E-value=1.9e-05  Score=68.06  Aligned_cols=22  Identities=45%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.||||||||+|.+..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999986

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=4.4e-05  Score=77.48  Aligned_cols=98  Identities=22%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             ccccchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187           25 INWFPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSCK  101 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g  101 (375)
                      +-.=|||.  |+..|+.+ .+-+|++|+|+|+.+....+-.+ +... ..+.|+++.+||+|..+.... .....+.+.|
T Consensus        59 FiDTPGHe--AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~-~v~~el~~~g  135 (509)
T COG0532          59 FIDTPGHE--AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPD-KVKQELQEYG  135 (509)
T ss_pred             EEcCCcHH--HHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHH-HHHHHHHHcC
Confidence            34569996  44455554 57889999999998866544322 2222 468999999999999754321 2222222222


Q ss_pred             ---------CcEEEEecCCccCHHHHHHHHHHH
Q 017187          102 ---------QDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       102 ---------~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                               ..++++||+++.|+++|+..+.-.
T Consensus       136 l~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~  168 (509)
T COG0532         136 LVPEEWGGDVIFVPVSAKTGEGIDELLELILLL  168 (509)
T ss_pred             CCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence                     257899999999999999987543

>cd04122 Rab14 Rab14 subfamily

Probab=97.94  E-value=2.2e-05  Score=68.30  Aligned_cols=22  Identities=27%  Similarity=0.541  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|.+..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~   24 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTE   24 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999986

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.94  E-value=2.5e-05  Score=68.42  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||++.+..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999986

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.93  E-value=2.7e-05  Score=68.24  Aligned_cols=97  Identities=15%  Similarity=-0.005  Sum_probs=62.8

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..|||.. ........++++|++|+|+|+..+.+-.+  ..+..+     ..++|+++|+||+|+.......+..+.+.
T Consensus        48 ~D~~G~~~-~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~  126 (167)
T cd04161          48 FDLGGGAN-FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS  126 (167)
T ss_pred             EECCCcHH-HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC
Confidence            44788743 22233567899999999999987532211  122222     24689999999999976543333443331


Q ss_pred             ------hCC--CcEEEEecCCc------cCHHHHHHHHH
Q 017187           99 ------SCK--QDYIAINAHSR------SSVQKLLELVE  123 (375)
Q Consensus        99 ------~~g--~~vi~iSa~~~------~gvk~Ll~~L~  123 (375)
                            +.+  ..++.+||+++      .|+.+-++||.
T Consensus       127 l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         127 LEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             cccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence                  112  35667899998      78999999885

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04125 RabA_like RabA-like subfamily

Probab=97.93  E-value=2e-05  Score=70.27  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|.+.+
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~   22 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3699999999999999999986

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=97.93  E-value=5.1e-05  Score=67.95  Aligned_cols=100  Identities=12%  Similarity=0.013  Sum_probs=64.1

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c----CCCCEEEEEEcCCCCChhhH--HHHHHH
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L----SAKRRVIALNKKDLANPNIL--NKWVRH   96 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~----~~kp~IiVlNK~DL~~~~~~--~~~~~~   96 (375)
                      .||+.. ...-....++.+|++|+|+|...+.+-..  ..+..+   .    .+.|+++|.||+|+.+...+  ....++
T Consensus        54 t~G~~~-~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~  132 (190)
T cd04144          54 TAGQEE-YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL  132 (190)
T ss_pred             CCCchh-hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH
Confidence            577633 22223356889999999999876533211  111111   1    35799999999999643221  122222


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+..+..++.+||+++.|++++++++.+.+..
T Consensus       133 ~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         133 ARRLGCEFIEASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             HHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            23345678999999999999999998776543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.93  E-value=2.2e-05  Score=71.18  Aligned_cols=66  Identities=21%  Similarity=0.273  Sum_probs=42.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~  204 (375)
                      .++++++|.+|+|||||+++|+.....    .|+..        ........|+|.+.....+. .+..+.++||||..
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~----~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAK----KGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHh----cccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence            468999999999999999999862100    01000        01111256888877643332 23468899999984

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.93  E-value=5.1e-05  Score=66.81  Aligned_cols=101  Identities=18%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc----c-CCCCEEEEEEcCCCCChhhH---H-HHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ----L-SAKRRVIALNKKDLANPNIL---N-KWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~----~-~~kp~IiVlNK~DL~~~~~~---~-~~~~   95 (375)
                      ..||...- .......++.+|++++|+|+..+.+..  ...+..+    . ...|+++|.||+||.+....   + ...+
T Consensus        55 Dt~G~~~~-~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~  133 (170)
T cd04108          55 DTAGQERF-KCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIK  133 (170)
T ss_pred             eCCChHHH-HhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHH
Confidence            46776432 222345588999999999997642221  1122222    1 12458999999999754321   1 1112


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.++.+.+++.+||+++.|++++++.+.+.+.+
T Consensus       134 ~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         134 LAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             HHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            223345678899999999999999998877654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04177 RSR1 RSR1 subgroup

Probab=97.93  E-value=2.2e-05  Score=68.59  Aligned_cols=22  Identities=41%  Similarity=0.519  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.||||||||+|++.+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~   23 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQ   23 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999986

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=5.6e-05  Score=72.26  Aligned_cols=102  Identities=19%  Similarity=0.211  Sum_probs=74.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhh--ccCCCCEEEEEEcCCCCChhhHH----HHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQP--QLSAKRRVIALNKKDLANPNILN----KWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~--~~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~   98 (375)
                      .-||| .--+.-|..-.+-.|-.++|++|..|...  -.+.|..  ...-+.+|+|-||+||++++...    ++.+|.+
T Consensus        92 DaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fvk  170 (415)
T COG5257          92 DAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVK  170 (415)
T ss_pred             eCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhc
Confidence            47999 34556666677788999999999875332  1122322  25668899999999999876532    3334443


Q ss_pred             ---hCCCcEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187           99 ---SCKQDYIAINAHSRSSVQKLLELVELKLKEV  129 (375)
Q Consensus        99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~  129 (375)
                         ..+.+++++||..+.+++.|++++.+.++..
T Consensus       171 Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         171 GTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             ccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence               2245899999999999999999999998764

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.92  E-value=2.9e-05  Score=67.09  Aligned_cols=22  Identities=45%  Similarity=0.721  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+++|..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3799999999999999999985

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.92  E-value=2e-05  Score=69.46  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+|+++|.||||||||+|.+..
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999996

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=97.91  E-value=2.9e-05  Score=69.19  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|++..
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~   25 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKF   25 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999985

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04114 Rab30 Rab30 subfamily

Probab=97.91  E-value=2.9e-05  Score=67.50  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+++++|.+|||||||++++..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~   29 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQ   29 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Confidence            347899999999999999999985

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.90  E-value=4.6e-05  Score=67.63  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=64.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChh------hHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPN------ILNKWV   94 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~------~~~~~~   94 (375)
                      ..||+-. ...-....++.+|++|+|+|...+.+-.+.   .+...   ..+.|+++|.||+||.+..      ......
T Consensus        55 Dt~G~~~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~  133 (187)
T cd04132          55 DTAGQEE-YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAE  133 (187)
T ss_pred             ECCCchh-HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHH
Confidence            3577532 112222357899999999999765433221   11111   2468999999999996532      111222


Q ss_pred             HHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           95 RHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        95 ~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++....+. +++.+||+++.|++++++.+...+..
T Consensus       134 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         134 SVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             HHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            22234455 78999999999999999988776544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>CHL00071 tufA elongation factor Tu

Probab=97.89  E-value=3e-05  Score=78.14  Aligned_cols=72  Identities=21%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhh-hccccccccc----ccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK----TKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL  204 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k----~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~  204 (375)
                      ....++++++|.+|+|||||+|+|++. +.+... ...    .........+|+|++.....+. ++.++.++||||..
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~-~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA-KAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc-cccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            466789999999999999999999972 111100 000    0111222347899887643332 33468899999954

>cd04128 Spg1 Spg1p

Probab=97.89  E-value=4.2e-05  Score=68.25  Aligned_cols=88  Identities=13%  Similarity=-0.002  Sum_probs=57.3

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCCh----h--h-HHHHHHHHhhCCCcEEEEe
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANP----N--I-LNKWVRHFDSCKQDYIAIN  108 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~----~--~-~~~~~~~~~~~g~~vi~iS  108 (375)
                      ..++++|++++|+|...+.+-.+  ..+...   ....+.|+|.||+||...    .  . .+...++.+..+..++.+|
T Consensus        68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~S  147 (182)
T cd04128          68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCS  147 (182)
T ss_pred             HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEe
Confidence            46789999999999977644322  122222   122344789999999621    1  1 1112222234456789999


Q ss_pred             cCCccCHHHHHHHHHHHHhh
Q 017187          109 AHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l~~  128 (375)
                      |+++.|++++++++.+.+.+
T Consensus       148 Ak~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         148 TSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999998776644

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03126 Elongation factor Tu; Provisional

Probab=97.89  E-value=0.00016  Score=74.18  Aligned_cols=106  Identities=16%  Similarity=0.027  Sum_probs=66.8

Q ss_pred             HHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEE
Q 017187            6 IIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIA   78 (375)
Q Consensus         6 ~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiV   78 (375)
                      -..||+++......+...+    +-.-|||. +.++.+...+..+|++++|+|+..............  ..++| +|++
T Consensus       125 Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~-~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvv  203 (478)
T PLN03126        125 ERARGITINTATVEYETENRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVF  203 (478)
T ss_pred             HHhCCeeEEEEEEEEecCCcEEEEEECCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEE
Confidence            4456665544443333322    44689995 566778888999999999999987654433222222  34677 6678


Q ss_pred             EEcCCCCChhhH-H----HHHHHHhhC-----CCcEEEEecCCc
Q 017187           79 LNKKDLANPNIL-N----KWVRHFDSC-----KQDYIAINAHSR  112 (375)
Q Consensus        79 lNK~DL~~~~~~-~----~~~~~~~~~-----g~~vi~iSa~~~  112 (375)
                      +||+|+++.+.. +    +..+++...     ..+++++|+.++
T Consensus       204 vNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g  247 (478)
T PLN03126        204 LNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA  247 (478)
T ss_pred             EecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence            999999874322 1    233344332     346788898765

>cd04175 Rap1 Rap1 subgroup

Probab=97.89  E-value=4.1e-05  Score=66.30  Aligned_cols=99  Identities=10%  Similarity=0.010  Sum_probs=63.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhH--HHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNIL--NKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~   97 (375)
                      ..||+... .......++.+|.+++|+|...+.+..+  ..+..+     ..+.|+++|.||+||.+....  ....++.
T Consensus        55 Dt~G~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  133 (164)
T cd04175          55 DTAGTEQF-TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA  133 (164)
T ss_pred             ECCCcccc-hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH
Confidence            36776432 1222346789999999999865433211  111111     246899999999999753211  1111222


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +..+.+++.+||+++.|+++++.++.+.+
T Consensus       134 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         134 RQWGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             HHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            33456889999999999999999987654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04118 Rab24 Rab24 subfamily

Probab=97.89  E-value=4.8e-05  Score=67.96  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh------HHHHHH
Q 017187           28 FPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI------LNKWVR   95 (375)
Q Consensus        28 fpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~------~~~~~~   95 (375)
                      .||...  .+.+ ...+.++|++++|+|...+.+-.+  ..+..+   ..+.|+++|.||+|+.+...      ..+..+
T Consensus        57 ~~G~~~--~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~  134 (193)
T cd04118          57 TAGSER--YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD  134 (193)
T ss_pred             CCCchh--hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH
Confidence            677632  2222 235679999999999976533211  112222   23689999999999974321      112223


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +....+.+++.+|++++.|++++++.+.+.+..
T Consensus       135 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         135 FADEIKAQHFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            333445678899999999999999998876643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.89  E-value=2.4e-05  Score=82.13  Aligned_cols=61  Identities=31%  Similarity=0.528  Sum_probs=44.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc--cCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA--HRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~--~~~~~~liDTPGi~~  205 (375)
                      .+...|+++|.+|+|||||+|+|++.            ....+..+|+|++...+.+.  ....+.++||||-..
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~------------~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~  147 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKT------------KVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA  147 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhC------------CcccccCCceeecceEEEEEECCCcEEEEEECCCCcc
Confidence            35578999999999999999999961            12234457888887654332  233699999999754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04155 Arl3 Arl3 subfamily

Probab=97.88  E-value=5e-05  Score=66.29  Aligned_cols=96  Identities=19%  Similarity=0.103  Sum_probs=61.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~   99 (375)
                      ..||+.. ........++.+|.+++|+|+..+.+-.  ...+...     ..++|+++++||+|+......+...+.+.-
T Consensus        64 D~~G~~~-~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~  142 (173)
T cd04155          64 DIGGQRA-IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNL  142 (173)
T ss_pred             ECCCCHH-HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCC
Confidence            3667632 2223345678999999999997542111  1111111     246899999999999765444444444421


Q ss_pred             -----CCCcEEEEecCCccCHHHHHHHHH
Q 017187          100 -----CKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus       100 -----~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                           ....++.+||+++.|++++++++.
T Consensus       143 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         143 HDLRDRTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             cccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence                 112467899999999999999874

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04127 Rab27A Rab27a subfamily

Probab=97.88  E-value=2.9e-05  Score=68.35  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++++|.+|||||||+|.+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~   26 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTD   26 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            347899999999999999999986

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=2.9e-05  Score=75.86  Aligned_cols=70  Identities=29%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC---CcEEEEEcCCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR---PSIYVLDTPGVLVP  206 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~---~~~~liDTPGi~~~  206 (375)
                      ++-.+++|++|.+|.|||||||+|+.......     .........|-.|..+..  ..+..+   -++.++||||+.+.
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-----~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~   92 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGN-----REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA   92 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCC-----cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence            46679999999999999999999997421110     011112222222333332  222221   14789999999764

>cd01890 LepA LepA subfamily

Probab=97.88  E-value=1.6e-05  Score=69.87  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|||||||+|+|.+
T Consensus         2 ni~~vG~~~~GKssL~~~l~~   22 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLE   22 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHH
Confidence            589999999999999999986

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.88  E-value=1.5e-05  Score=67.53  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.||||||||+|+|.+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~   22 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQG   22 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            689999999999999999986

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG2229 Predicted GTPase [General function prediction only]

Probab=97.88  E-value=0.00013  Score=64.59  Aligned_cols=97  Identities=20%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC--CC
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSC--KQ  102 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~--g~  102 (375)
                      +|||- +..-.+.-..+.++-+|+++|++.|.......+.++   ....|+++.+||.||.+....++..+++...  ..
T Consensus        75 tPGq~-RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~  153 (187)
T COG2229          75 TPGQE-RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV  153 (187)
T ss_pred             CCCcH-HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence            89994 333333345678999999999998877644455554   2337999999999998766566666666533  67


Q ss_pred             cEEEEecCCccCHHHHHHHHHHH
Q 017187          103 DYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       103 ~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      +++..++..+++..+.+..+...
T Consensus       154 ~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         154 PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ceeeeecccchhHHHHHHHHHhh
Confidence            89999999999888877766544

>cd04136 Rap_like Rap-like subfamily

Probab=97.87  E-value=4.4e-05  Score=65.71  Aligned_cols=85  Identities=13%  Similarity=0.028  Sum_probs=56.7

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch-----hHhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..++.+|.+++|+|...+.+-.+.     .+.+.  ..+.|+++|.||+|+.+....  +...++.+..+.+++.+||++
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (163)
T cd04136          68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKS  147 (163)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCC
Confidence            457899999999998765332111     11111  236899999999999753221  112222223356789999999


Q ss_pred             ccCHHHHHHHHHHH
Q 017187          112 RSSVQKLLELVELK  125 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~  125 (375)
                      +.|++++++++.+.
T Consensus       148 ~~~v~~l~~~l~~~  161 (163)
T cd04136         148 KINVDEVFADLVRQ  161 (163)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04110 Rab35 Rab35 subfamily

Probab=97.87  E-value=3.3e-05  Score=69.78  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.+|||||||++.+.+
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~   28 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFAD   28 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999986

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.87  E-value=4.8e-05  Score=67.83  Aligned_cols=25  Identities=16%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||++.+..
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~   39 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKL   39 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Confidence            4568999999999999999999974

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.87  E-value=2.5e-05  Score=72.18  Aligned_cols=63  Identities=25%  Similarity=0.381  Sum_probs=44.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ...-+|+++|+|.||||||+..|..+            +.....+..||-... +..-..+.+++++|.|||.+-.
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T------------~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGA  123 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITST------------HSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGA  123 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcc------------hhhhhceeeeEEEeecceEEecCceEEEecCccccccc
Confidence            45678999999999999999999973            233333444554443 2222344579999999998743

>PLN03118 Rab family protein; Provisional

Probab=97.87  E-value=7.5e-05  Score=68.03  Aligned_cols=102  Identities=14%  Similarity=0.032  Sum_probs=66.4

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hH----hhc--cCCCCEEEEEEcCCCCChhhH--HHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GL----QPQ--LSAKRRVIALNKKDLANPNIL--NKWVR   95 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l----~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~   95 (375)
                      -..||+-. ........++.+|++|+|+|+..+.+..+.  .+    ..+  ..+.|+++|.||+|+......  +...+
T Consensus        67 ~Dt~G~~~-~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~  145 (211)
T PLN03118         67 WDTAGQER-FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA  145 (211)
T ss_pred             EECCCchh-hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence            35777632 222234668899999999999765332211  01    111  134689999999999753222  22233


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+.+..++.+|++++.|++++++.+...+.+
T Consensus       146 ~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~  178 (211)
T PLN03118        146 LAKEHGCLFLECSAKTRENVEQCFEELALKIME  178 (211)
T ss_pred             HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            333456678899999999999999999877654

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.87  E-value=6.4e-05  Score=62.26  Aligned_cols=97  Identities=15%  Similarity=0.042  Sum_probs=66.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhH------hh-ccCCCCEEEEEEcCCCCChhhHHHH---HH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL------QP-QLSAKRRVIALNKKDLANPNILNKW---VR   95 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l------~~-~~~~kp~IiVlNK~DL~~~~~~~~~---~~   95 (375)
                      -.+||+... .......+..+|.+++|+|+..+.+..+...      .. ...++|+++|+||+|+.+.......   ..
T Consensus        50 ~D~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~  128 (157)
T cd00882          50 WDTAGQERF-RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ  128 (157)
T ss_pred             EecCChHHH-HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH
Confidence            347887543 3334667899999999999987654332211      11 1457899999999999866543332   12


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHH
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                      .......+++.+|+.++.+++++++++.
T Consensus       129 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         129 LAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            2223456889999999999999988864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.86  E-value=9.2e-05  Score=79.34  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=66.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-hHhhc-cCCCCEEEEEEcCCCCChh--hHHHHHHHH----
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-GLQPQ-LSAKRRVIALNKKDLANPN--ILNKWVRHF----   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-~l~~~-~~~kp~IiVlNK~DL~~~~--~~~~~~~~~----   97 (375)
                      -..|||-.. .......+..+|++|+|+|+......... .+... ..+.|+|+|+||+|+.+..  .....+..+    
T Consensus       300 iDTPGhe~F-~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~  378 (742)
T CHL00189        300 LDTPGHEAF-SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIP  378 (742)
T ss_pred             EECCcHHHH-HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccch
Confidence            457999432 23334578999999999999875433221 22222 3578999999999997532  222222211    


Q ss_pred             hhCC--CcEEEEecCCccCHHHHHHHHHHHH
Q 017187           98 DSCK--QDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        98 ~~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ...+  .+++++||+++.|+++|++++....
T Consensus       379 e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        379 EKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            1112  4789999999999999999887654

>cd00876 Ras Ras family

Probab=97.86  E-value=2.2e-05  Score=67.12  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.+|||||||+|+|.+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999986

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.86  E-value=3.5e-05  Score=67.48  Aligned_cols=22  Identities=18%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|.+..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~   22 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLT   22 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999999985

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.86  E-value=0.00018  Score=64.73  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             hcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCc--EEEEecCCccCH
Q 017187           45 ISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQD--YIAINAHSRSSV  115 (375)
Q Consensus        45 ~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~--vi~iSa~~~~gv  115 (375)
                      +...++.++|+|.++...+.++.++  ..+.|+++|+||+|.++.....+.+....     .....  ++.+|+.++.|+
T Consensus       106 ~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi  185 (200)
T COG0218         106 NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGI  185 (200)
T ss_pred             hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCH
Confidence            4667999999999998877777776  46899999999999998755443332222     11222  788899999999


Q ss_pred             HHHHHHHHHHHh
Q 017187          116 QKLLELVELKLK  127 (375)
Q Consensus       116 k~Ll~~L~~~l~  127 (375)
                      +++.+.|.+.+.
T Consensus       186 ~~l~~~i~~~~~  197 (200)
T COG0218         186 DELKAKILEWLK  197 (200)
T ss_pred             HHHHHHHHHHhh
Confidence            999998887664

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.85  E-value=9e-05  Score=65.33  Aligned_cols=89  Identities=10%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAH  110 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~  110 (375)
                      ...+..+|.+|+|+|..++.+-.+.     .+.+.  ..+.|+++|.||+|+.....+  +...++.++.+.+++.+||+
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~  147 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAA  147 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecC
Confidence            3567899999999999876543321     12222  246899999999998643211  12222223446788999999


Q ss_pred             CccCHHHHHHHHHHHHhh
Q 017187          111 SRSSVQKLLELVELKLKE  128 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.|++++++++...+..
T Consensus       148 ~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         148 LRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999988765543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04120 Rab12 Rab12 subfamily

Probab=97.84  E-value=8e-05  Score=67.82  Aligned_cols=99  Identities=9%  Similarity=0.004  Sum_probs=63.8

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhhH--HHHHHHHhh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNIL--NKWVRHFDS   99 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~   99 (375)
                      .+|+- +...-....++++|++|+|+|...+.+-.+.     .+.+. ..+.|+++|.||+||.+...+  ....++.++
T Consensus        56 taGqe-~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~  134 (202)
T cd04120          56 TAGQE-RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ  134 (202)
T ss_pred             CCCch-hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence            56652 2222234568899999999999876443221     11111 246899999999999643221  112222222


Q ss_pred             -CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          100 -CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       100 -~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                       .+..++.+||+++.|++++++++.+.+.
T Consensus       135 ~~~~~~~etSAktg~gV~e~F~~l~~~~~  163 (202)
T cd04120         135 ITGMRFCEASAKDNFNVDEIFLKLVDDIL  163 (202)
T ss_pred             cCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence             2567889999999999999988876553

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.84  E-value=3.6e-05  Score=70.84  Aligned_cols=98  Identities=18%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCc--hhHhh---ccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187           28 FPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAH--PGLQP---QLSAKRRVIALNKKDLANPNILNKWVRHFDSCK  101 (375)
Q Consensus        28 fpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~--~~l~~---~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g  101 (375)
                      .||+..  .+.+ ...+..+|++|+|+|...+.+-.+  ..+..   ...+.|+++|.||+||.+.....+..++.+..+
T Consensus        69 t~G~~~--~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~  146 (219)
T PLN03071         69 TAGQEK--FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN  146 (219)
T ss_pred             CCCchh--hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcC
Confidence            566532  2223 345789999999999876533221  11111   235689999999999964332222223333456


Q ss_pred             CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          102 QDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..++.+||+++.|++++++++.+.+.
T Consensus       147 ~~~~e~SAk~~~~i~~~f~~l~~~~~  172 (219)
T PLN03071        147 LQYYEISAKSNYNFEKPFLYLARKLA  172 (219)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999998876553

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.84  E-value=4.5e-05  Score=73.73  Aligned_cols=110  Identities=22%  Similarity=0.214  Sum_probs=77.2

Q ss_pred             HHHHhcccccceEEeeCCCcc----cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC---CchhHhhccCCCCEEE
Q 017187            5 RIIKKGLGLGEMGFTKGGGNI----NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS---AHPGLQPQLSAKRRVI   77 (375)
Q Consensus         5 ~~~~~~~~~g~~~~~~~~~~~----~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~---~~~~l~~~~~~kp~Ii   77 (375)
                      .-=..||++.-+-+-++..|+    -.-|||- ...|.|---.+.||+.|.++|||.....   +...+..+++-+.+++
T Consensus        66 AEREQGITIDVAYRyFsT~KRkFIiADTPGHe-QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvv  144 (431)
T COG2895          66 AEREQGITIDVAYRYFSTEKRKFIIADTPGHE-QYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVV  144 (431)
T ss_pred             HHHhcCceEEEEeeecccccceEEEecCCcHH-HHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEE
Confidence            334467888888888888875    4579994 4556677778999999999999975433   3344555566677888


Q ss_pred             EEEcCCCCChh--hHHHHH----HHHhhCCC---cEEEEecCCccCH
Q 017187           78 ALNKKDLANPN--ILNKWV----RHFDSCKQ---DYIAINAHSRSSV  115 (375)
Q Consensus        78 VlNK~DL~~~~--~~~~~~----~~~~~~g~---~vi~iSa~~~~gv  115 (375)
                      .+||+||++-+  ..+.+.    .+..+.+.   .++++||..|.++
T Consensus       145 AVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV  191 (431)
T COG2895         145 AVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV  191 (431)
T ss_pred             EEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence            89999999643  222333    33334443   6889999887654

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.84  E-value=4.5e-05  Score=74.17  Aligned_cols=27  Identities=30%  Similarity=0.566  Sum_probs=24.7

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      ++-.+++|++|.+|.||||+||+|++.
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~   46 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGT   46 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHh
Confidence            367899999999999999999999984

>cd04158 ARD1 ARD1 subfamily

Probab=97.84  E-value=2.8e-05  Score=68.15  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|||||||+|++.+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~   21 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQ   21 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999986

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.84  E-value=3e-05  Score=67.94  Aligned_cols=53  Identities=23%  Similarity=0.456  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV  203 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi  203 (375)
                      +++++|.+|||||||+|.+.+.           ......+..|.++.  .+... ...+.++||||-
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-----------~~~~~~~t~g~~~~--~~~~~-~~~~~i~D~~G~   53 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-----------IPKKVAPTVGFTPT--KLRLD-KYEVCIFDLGGG   53 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-----------CCccccCcccceEE--EEEEC-CEEEEEEECCCc
Confidence            3789999999999999999861           11223344454432  23232 235789999995

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04176 Rap2 Rap2 subgroup

Probab=97.84  E-value=3.7e-05  Score=66.47  Aligned_cols=22  Identities=41%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.||||||||++.+..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVS   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999986

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04111 Rab39 Rab39 subfamily

Probab=97.83  E-value=4.9e-05  Score=69.52  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|.+.+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~   24 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTE   24 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            36899999999999999999996

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04151 Arl1 Arl1 subfamily

Probab=97.83  E-value=3e-05  Score=66.92  Aligned_cols=21  Identities=19%  Similarity=0.612  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|||||||+|+|..
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~   21 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQL   21 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHcc
Confidence            478999999999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04142 RRP22 RRP22 subfamily

Probab=97.82  E-value=0.00016  Score=65.59  Aligned_cols=87  Identities=18%  Similarity=0.053  Sum_probs=57.4

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCch-h----Hhhc----cCCCCEEEEEEcCCCCChhhH--HHHHHHHh-hCCCcEEEE
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHP-G----LQPQ----LSAKRRVIALNKKDLANPNIL--NKWVRHFD-SCKQDYIAI  107 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~-~----l~~~----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~-~~g~~vi~i  107 (375)
                      ...++.+|++|+|+|+..+.+-.+. .    +.+.    ..+.|+++|.||+|+......  +...++.. ..+.+++.+
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  154 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC  154 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence            3457899999999999876433211 1    1111    145799999999999653211  11112222 235678999


Q ss_pred             ecCCccCHHHHHHHHHHHH
Q 017187          108 NAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~~l  126 (375)
                      ||+++.|++++++.+...+
T Consensus       155 Sak~g~~v~~lf~~i~~~~  173 (198)
T cd04142         155 SAKYNWHILLLFKELLISA  173 (198)
T ss_pred             cCCCCCCHHHHHHHHHHHh
Confidence            9999999999988876554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.82  E-value=4.4e-05  Score=68.98  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|.+.+
T Consensus         1 ~KivivG~~~vGKTsli~~l~~   22 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVH   22 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3699999999999999999986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=97.81  E-value=5.2e-05  Score=69.39  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|.+.+
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~   22 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAK   22 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhc
Confidence            3689999999999999999986

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04140 ARHI_like ARHI subfamily

Probab=97.81  E-value=7e-05  Score=65.15  Aligned_cols=85  Identities=13%  Similarity=0.026  Sum_probs=56.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc-hh----Hhhcc----CCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEec
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH-PG----LQPQL----SAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINA  109 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~-~~----l~~~~----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa  109 (375)
                      ..+..+|.+|+|+|...+.+..+ ..    +.+..    .+.|+++|.||+|+.+....  +....+....+..++.+||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  147 (165)
T cd04140          68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA  147 (165)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence            45679999999999876543221 11    11111    46899999999999753221  1222222234557889999


Q ss_pred             CCccCHHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVELK  125 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~  125 (375)
                      +++.|++++++++.++
T Consensus       148 ~~g~~v~~~f~~l~~~  163 (165)
T cd04140         148 KTNHNVQELFQELLNL  163 (165)
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999999988643

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.81  E-value=8.6e-05  Score=80.20  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=64.6

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh--hhHHHHHHHH---
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP--NILNKWVRHF---   97 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~--~~~~~~~~~~---   97 (375)
                      +-..|||-.. .......+..+|++|+|+|+.+............  ..+.|+|+++||+|+...  +.....+..+   
T Consensus       341 fiDTPGhe~F-~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~  419 (787)
T PRK05306        341 FLDTPGHEAF-TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLV  419 (787)
T ss_pred             EEECCCCccc-hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhccc
Confidence            3357999543 2233346788999999999987543332222222  357899999999999643  2222211111   


Q ss_pred             -hhC--CCcEEEEecCCccCHHHHHHHHHHH
Q 017187           98 -DSC--KQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        98 -~~~--g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                       ...  ..+++++||+++.|+++|++++...
T Consensus       420 ~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        420 PEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence             111  2578999999999999999988643

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.81  E-value=4.1e-05  Score=67.95  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|.+.+
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~   22 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQ   22 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999999986

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.81  E-value=3.7e-05  Score=73.22  Aligned_cols=67  Identities=19%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHh-hhccccccccc--cccccc-----CCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQ-IALSRFPVQEK--TKRATV-----GPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k--~~~~~v-----~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      +|+++|.+|+|||||+|+|+. .|.+..  .++  ...+.+     ....|+|.+.....+ +.+..+.++||||...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHK--IGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcc--cccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence            488999999999999999975 222110  000  001111     123477776553222 2234688999999764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01893 Miro1 Miro1 subfamily

Probab=97.81  E-value=3.9e-05  Score=66.92  Aligned_cols=21  Identities=38%  Similarity=0.580  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.+|||||||+|++..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~   22 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVS   22 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999986

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.80  E-value=7.6e-05  Score=78.41  Aligned_cols=99  Identities=16%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh--hhHHHHHHHHh--
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP--NILNKWVRHFD--   98 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~--~~~~~~~~~~~--   98 (375)
                      +-..|||.... ......+..+|++|+|+|+............+.  ..+.|+++++||+|+...  +....++..+.  
T Consensus       139 ~iDTPGhe~F~-~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~  217 (587)
T TIGR00487       139 FLDTPGHEAFT-SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLV  217 (587)
T ss_pred             EEECCCCcchh-hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhh
Confidence            34579996432 222345789999999999986543332222222  357899999999999642  22222222110  


Q ss_pred             --hC--CCcEEEEecCCccCHHHHHHHHHH
Q 017187           99 --SC--KQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        99 --~~--g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                        ..  ..+++++||+++.|++++++++..
T Consensus       218 ~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       218 PEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence              11  136899999999999999998854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PLN03108 Rab family protein; Provisional

Probab=97.80  E-value=0.00015  Score=66.09  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=64.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~   98 (375)
                      ..||+.. ........+..+|++|+|+|+..+.+..+  ..+...    ....|+++|.||+||....  ..+...++.+
T Consensus        61 Dt~G~~~-~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~  139 (210)
T PLN03108         61 DTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK  139 (210)
T ss_pred             eCCCcHH-HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHH
Confidence            4677643 22233466789999999999976543221  112111    2468999999999997532  1222233334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +.+..++.+|++++.+++++++++.+.+
T Consensus       140 ~~~~~~~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        140 EHGLIFMEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999887765544

>cd04135 Tc10 TC10 subfamily

Probab=97.79  E-value=4.8e-05  Score=66.46  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|.+..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~   22 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYAN   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999999986

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.79  E-value=6.3e-05  Score=69.24  Aligned_cols=63  Identities=21%  Similarity=0.253  Sum_probs=39.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++++++|.+|||||||++.+.. +.         -.....+..|++.....+..... -.+.++||||...
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~-~~---------f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~   74 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLT-GE---------FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhh-CC---------CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence            4568999999999999999999875 11         11222333444433322322221 2478999999754

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=0.00016  Score=73.45  Aligned_cols=110  Identities=24%  Similarity=0.246  Sum_probs=70.8

Q ss_pred             cceEEeeCC-Ccccc--cchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           14 GEMGFTKGG-GNINW--FPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        14 g~~~~~~~~-~~~~w--fpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      |.-...... .+++.  =|||++  +..|+.+ ..-+|+|++|+.|.+....+-.+-...  ..+.|+++.+||||....
T Consensus       191 GAF~V~~p~G~~iTFLDTPGHaA--F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a  268 (683)
T KOG1145|consen  191 GAFTVTLPSGKSITFLDTPGHAA--FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA  268 (683)
T ss_pred             ceEEEecCCCCEEEEecCCcHHH--HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence            444444433 33443  589975  4556565 566799999999987655433222222  467999999999997533


Q ss_pred             hhHHHHHHHHh-------hCC--CcEEEEecCCccCHHHHHHHHHHHH
Q 017187           88 NILNKWVRHFD-------SCK--QDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        88 ~~~~~~~~~~~-------~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      . .++..+.+-       +.|  .+++++|++++.|++.|.+.+.-..
T Consensus       269 ~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  269 N-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             C-HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence            2 222222221       222  3789999999999999988775443

>PLN03110 Rab GTPase; Provisional

Probab=97.77  E-value=7.5e-05  Score=68.49  Aligned_cols=24  Identities=21%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++++|.+|||||||++.|.+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~   34 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTR   34 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999986

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.76  E-value=4.7e-05  Score=66.52  Aligned_cols=20  Identities=40%  Similarity=0.541  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+|.+|||||||+|.+.+
T Consensus         1 i~i~G~~~vGKTsli~~~~~   20 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTT   20 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHh
Confidence            57999999999999999986

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04111 Rab39 Rab39 subfamily

Probab=97.75  E-value=0.00013  Score=66.65  Aligned_cols=101  Identities=18%  Similarity=0.102  Sum_probs=65.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+... ..-....+.++|++|+|+|...+.+-.+  ..+.+.   .  ...|+++|.||+|+.+...  .+...++.
T Consensus        58 Dt~G~~~~-~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~  136 (211)
T cd04111          58 DTAGQERF-RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA  136 (211)
T ss_pred             eCCcchhH-HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence            46887432 2223456789999999999987533211  111211   1  2356788999999975322  11222222


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+..++.+|++++.|++++++.+.+.+.+
T Consensus       137 ~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~  167 (211)
T cd04111         137 KDLGMKYIETSARTGDNVEEAFELLTQEIYE  167 (211)
T ss_pred             HHhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            3445778999999999999999999876654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.75  E-value=2.6e-05  Score=65.57  Aligned_cols=97  Identities=13%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC-------chhHhhccC-CCCEEEEEEcCCCCChhhHHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA-------HPGLQPQLS-AKRRVIALNKKDLANPNILNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~-------~~~l~~~~~-~kp~IiVlNK~DL~~~~~~~~~~~~~   97 (375)
                      -..|||.... .......++++.++.++|......+.       ...+.+... +.|+++|+||+|+............+
T Consensus        55 ~D~~G~~~~~-~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  133 (161)
T TIGR00231        55 LDTAGQEDYR-AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLF  133 (161)
T ss_pred             EECCCcccch-HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHH
Confidence            3477764431 11223355666666666654431111       112222222 78999999999998754333333333


Q ss_pred             hhC-CCcEEEEecCCccCHHHHHHHHH
Q 017187           98 DSC-KQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        98 ~~~-g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                      ... ..+++++||.++.|+.++.++|.
T Consensus       134 ~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       134 AKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             hhccCCceEEeecCCCCCHHHHHHHhh
Confidence            322 34689999999999999988764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.75  E-value=8.3e-05  Score=65.42  Aligned_cols=21  Identities=48%  Similarity=0.649  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|||||||+|.+.+
T Consensus         2 ki~ivG~~~vGKTsli~~~~~   22 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCK   22 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999996

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.75  E-value=3.5e-05  Score=66.88  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.||||||||++++..
T Consensus         1 ki~vvG~~~~GKtsli~~~~~   21 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLT   21 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHh
Confidence            378999999999999999985

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.75  E-value=6.6e-05  Score=66.35  Aligned_cols=57  Identities=16%  Similarity=0.328  Sum_probs=36.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ..++++++|.+|||||||++.+.. +          ...  ...|.+..+...+.. ..-.+.++||||..
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~-~----------~~~--~~~~t~~~~~~~~~~-~~~~l~l~D~~G~~   68 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKL-G----------ESV--TTIPTIGFNVETVTY-KNISFTVWDVGGQD   68 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhc-C----------CCC--CcCCccccceEEEEE-CCEEEEEEECCCCh
Confidence            468999999999999999999964 1          111  122322222222322 22357899999964

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.74  E-value=0.00018  Score=62.97  Aligned_cols=99  Identities=16%  Similarity=0.100  Sum_probs=60.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhhH-HHHH-HHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNIL-NKWV-RHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~~-~~~~-~~~   97 (375)
                      ..||+......-....++++|++++|+|+..+.+..+.  .+...     ..+.|+++|.||+|+...... .... ++.
T Consensus        57 Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  136 (170)
T cd04115          57 DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA  136 (170)
T ss_pred             eCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH
Confidence            35776432212234557899999999999865433221  11111     245899999999998643221 1222 222


Q ss_pred             hhCCCcEEEEecCC---ccCHHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHS---RSSVQKLLELVELK  125 (375)
Q Consensus        98 ~~~g~~vi~iSa~~---~~gvk~Ll~~L~~~  125 (375)
                      +....+++.+||++   +.++++++..+.+.
T Consensus       137 ~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~  167 (170)
T cd04115         137 DAHSMPLFETSAKDPSENDHVEAIFMTLAHK  167 (170)
T ss_pred             HHcCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence            23446788999998   67788877766544

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04117 Rab15 Rab15 subfamily

Probab=97.74  E-value=8.5e-05  Score=64.52  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.+|||||||++.+..
T Consensus         2 ki~vvG~~~~GKTsli~~~~~   22 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTD   22 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            689999999999999999986

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.73  E-value=0.00021  Score=62.88  Aligned_cols=103  Identities=15%  Similarity=0.004  Sum_probs=65.8

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVR   95 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~   95 (375)
                      +-+.||+.... ......+..+|.+++|+|.....+-..  .   .+.+.  ..+.|+++|.||+|+.....  ......
T Consensus        53 l~D~~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~  131 (180)
T cd04137          53 IVDTAGQDEYS-ILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE  131 (180)
T ss_pred             EEECCChHhhH-HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence            34678874321 222346778999999999875322110  0   11111  24579999999999974321  122223


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.+..+.+++.+|++++.|+.++++++.+.+..
T Consensus       132 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         132 LAESWGAAFLESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            333445678999999999999999999877654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04144 Ras2 Ras2 subfamily

Probab=97.73  E-value=4.8e-05  Score=68.10  Aligned_cols=21  Identities=33%  Similarity=0.426  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|||||||+|.+..
T Consensus         1 ki~ivG~~~vGKTsli~~l~~   21 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCL   21 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999985

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.73  E-value=0.00014  Score=76.64  Aligned_cols=81  Identities=15%  Similarity=0.063  Sum_probs=56.4

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLEL  121 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~~  121 (375)
                      ..+|+|+.|+|+..... ......+. ..++|+++|+||+|+.++.......+.+ +..+.+++++||+++.|++++.+.
T Consensus        71 ~~aDvvI~VvDat~ler-~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~  149 (591)
T TIGR00437        71 EKPDLVVNVVDASNLER-NLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDA  149 (591)
T ss_pred             cCCCEEEEEecCCcchh-hHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence            47999999999976321 11122222 3578999999999997543322222233 245678999999999999999999


Q ss_pred             HHHH
Q 017187          122 VELK  125 (375)
Q Consensus       122 L~~~  125 (375)
                      +.+.
T Consensus       150 i~~~  153 (591)
T TIGR00437       150 IRKA  153 (591)
T ss_pred             HHHH
Confidence            8764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.73  E-value=0.00025  Score=74.58  Aligned_cols=99  Identities=21%  Similarity=0.133  Sum_probs=62.6

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh--------------
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI--------------   89 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~--------------   89 (375)
                      -.-|||-.. .......+..+|++++|+|++...........+.  ..++|+++|+||+|+.+...              
T Consensus        74 iDTpG~e~f-~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~  152 (590)
T TIGR00491        74 IDTPGHEAF-TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ  152 (590)
T ss_pred             EECCCcHhH-HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence            346898432 2223345789999999999987544332222222  35789999999999974210              


Q ss_pred             ---H-HHH-------HHHHhhC---------------CCcEEEEecCCccCHHHHHHHHHHH
Q 017187           90 ---L-NKW-------VRHFDSC---------------KQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        90 ---~-~~~-------~~~~~~~---------------g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                         + ..+       ...+.+.               ..+++++||+++.|+++|+.++...
T Consensus       153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence               0 000       0111111               2478999999999999999987543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04148 RGK RGK subfamily

Probab=97.72  E-value=6e-05  Score=69.48  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~   22 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTS   22 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            3699999999999999999975

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04148 RGK RGK subfamily

Probab=97.72  E-value=0.00011  Score=67.79  Aligned_cols=98  Identities=16%  Similarity=0.057  Sum_probs=63.3

Q ss_pred             cchhHHHHHHHHHHHhh-hcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhH--HHHHHHH
Q 017187           28 FPGHMAAATRAIKHRLK-ISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNIL--NKWVRHF   97 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~-~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~   97 (375)
                      .||+- ..++  ...+. .+|++++|+|+.++.+-.+  ..+..+     ..+.|+|+|.||+|+.+....  +...++.
T Consensus        57 t~G~~-~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a  133 (221)
T cd04148          57 HWEQE-MWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA  133 (221)
T ss_pred             CCCcc-hHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH
Confidence            57764 1222  12345 8999999999987643221  111111     146899999999999754321  1122222


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ...+.+++.+||+++.|++++++++.+.+..
T Consensus       134 ~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         134 VVFDCKFIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             HHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            2345678999999999999999998877653

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN03108 Rab family protein; Provisional

Probab=97.72  E-value=8.1e-05  Score=67.95  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++++|.+|||||||+|.|.+
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~   28 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            357899999999999999999986

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.72  E-value=0.00022  Score=67.85  Aligned_cols=114  Identities=15%  Similarity=0.187  Sum_probs=75.2

Q ss_pred             ceEEeeCCCccc---ccchhHHHH-HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCCh
Q 017187           15 EMGFTKGGGNIN---WFPGHMAAA-TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        15 ~~~~~~~~~~~~---wfpgHm~k~-~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~~   87 (375)
                      +.+|-++|+-+.   -.-.||... +...+..+.++|+|+.|+|+..+-...++.+.+.   ....|-|+|+||+|....
T Consensus       121 Qlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~  200 (379)
T KOG1423|consen  121 QLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ  200 (379)
T ss_pred             EEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh
Confidence            456666664321   122233332 3567788999999999999987666556644333   356889999999997643


Q ss_pred             hh-----------------HHHHHHHHhh----------CCC----cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           88 NI-----------------LNKWVRHFDS----------CKQ----DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        88 ~~-----------------~~~~~~~~~~----------~g~----~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..                 ..+|.+.|..          +|.    ++|++|+.+|+|++++.++|....+.
T Consensus       201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  201 KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            21                 1134444321          111    58999999999999999999877654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.70  E-value=5.8e-05  Score=79.24  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...|+++|.+|+|||||+|+|++
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~   26 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRG   26 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34699999999999999999997

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.70  E-value=9.8e-05  Score=64.51  Aligned_cols=86  Identities=13%  Similarity=0.055  Sum_probs=57.0

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhh-H-------------HHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNI-L-------------NKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~-~-------------~~~~~~~~~~  100 (375)
                      ..++.+|++|+|+|...+.+-.+.   .+..+   ..++|+++|.||+|+.+... .             ++..++.++.
T Consensus        65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  144 (174)
T smart00174       65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI  144 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence            357899999999999765332211   11111   34789999999999975321 0             1111222234


Q ss_pred             CC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187          101 KQ-DYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       101 g~-~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +. .++.+||+++.|++++++.+.+.+
T Consensus       145 ~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      145 GAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            43 788999999999999998886553

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.70  E-value=9.4e-05  Score=71.36  Aligned_cols=90  Identities=22%  Similarity=0.338  Sum_probs=63.3

Q ss_pred             HHHHHhhhcCeEEEEEeCCCCCCCCch---------hHhhc---cCCCCEEEEEEcCCC-CChhhHHHHHHHHhh-CCCc
Q 017187           38 AIKHRLKISDLVIEVRDSRIPLSSAHP---------GLQPQ---LSAKRRVIALNKKDL-ANPNILNKWVRHFDS-CKQD  103 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p~s~~~~---------~l~~~---~~~kp~IiVlNK~DL-~~~~~~~~~~~~~~~-~g~~  103 (375)
                      +..+-+++|-++++|+|... ....+|         +|..+   +.+||.++|+||+|+ .+.+..+...+++.+ .+..
T Consensus       230 ~FLrHIERt~vL~hviD~s~-~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~  308 (369)
T COG0536         230 RFLRHIERTRVLLHVIDLSP-IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE  308 (369)
T ss_pred             HHHHHHHhhheeEEEEecCc-ccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC
Confidence            44556889999999999752 111111         23333   568999999999995 455667777777753 3433


Q ss_pred             EE-EEecCCccCHHHHHHHHHHHHhh
Q 017187          104 YI-AINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       104 vi-~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .. ++|+.++.|++.|+..+.+.+..
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHH
Confidence            22 39999999999999998887765

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.70  E-value=8e-05  Score=64.67  Aligned_cols=22  Identities=18%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~   22 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKL   22 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3699999999999999999964

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.70  E-value=8.5e-05  Score=65.21  Aligned_cols=95  Identities=9%  Similarity=0.034  Sum_probs=60.3

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhh------------
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNI------------   89 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~------------   89 (375)
                      .||+.... ......++++|++|+|+|...+.+-.+   ..+..+   ..+.|+++|.||+||.+...            
T Consensus        55 t~G~~~~~-~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  133 (173)
T cd04130          55 TAGQDEFD-KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKP  133 (173)
T ss_pred             CCCChhhc-cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCC
Confidence            67763321 111235689999999999987644322   112222   24689999999999975321            


Q ss_pred             --HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHH
Q 017187           90 --LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        90 --~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                        .++...+.++.+. .++.+||+++.|++++.+.+.
T Consensus       134 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         134 VSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             cCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence              1122233333444 789999999999999987653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd00157 Rho Rho (Ras homology) family

Probab=97.69  E-value=7.7e-05  Score=64.74  Aligned_cols=97  Identities=12%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhh---ccCCCCEEEEEEcCCCCChhhH----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQP---QLSAKRRVIALNKKDLANPNIL----------   90 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~---~~~~kp~IiVlNK~DL~~~~~~----------   90 (375)
                      ..||+... ..-....++.+|++++|+|+..+.+....   .+..   ...++|+++|+||+|+.+....          
T Consensus        54 D~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  132 (171)
T cd00157          54 DTAGQEEY-DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEP  132 (171)
T ss_pred             eCCCcccc-cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCc
Confidence            36776532 11112345789999999999765332111   1111   1346999999999999765422          


Q ss_pred             ---HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHH
Q 017187           91 ---NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        91 ---~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                         +...++....+. .++.+|++++.|++++++.+.+
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         133 ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence               112222233344 7899999999999999888753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK12735 elongation factor Tu; Reviewed

Probab=97.69  E-value=7.2e-05  Score=75.09  Aligned_cols=69  Identities=19%  Similarity=0.267  Sum_probs=45.1

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG  202 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG  202 (375)
                      ..+.++++++|.+|+|||||+|+|++.-..    .++.+        ........|+|.+.....+. .+.++.++||||
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPG   84 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK----KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG   84 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhh----cCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCC
Confidence            466789999999999999999999862100    01111        01112256888887644442 234688999999


Q ss_pred             CC
Q 017187          203 VL  204 (375)
Q Consensus       203 i~  204 (375)
                      ..
T Consensus        85 h~   86 (396)
T PRK12735         85 HA   86 (396)
T ss_pred             HH
Confidence            73

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.69  E-value=8.2e-05  Score=65.01  Aligned_cols=95  Identities=18%  Similarity=0.090  Sum_probs=59.4

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHH-----
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHF-----   97 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~-----   97 (375)
                      .||+.. ........++++|.+|+|+|+..+.+-.+  ..+.++   ..++|+++|.||+|+..........+.+     
T Consensus        51 t~G~~~-~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~  129 (164)
T cd04162          51 IGGSQN-LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPI  129 (164)
T ss_pred             CCCCcc-hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh
Confidence            577632 22223356899999999999877542111  122222   2578999999999997543333322222     


Q ss_pred             -hhCCCcEEEEecCC------ccCHHHHHHHHH
Q 017187           98 -DSCKQDYIAINAHS------RSSVQKLLELVE  123 (375)
Q Consensus        98 -~~~g~~vi~iSa~~------~~gvk~Ll~~L~  123 (375)
                       ++.+..++.+||++      ++|++++++.+.
T Consensus       130 ~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         130 ARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             cCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence             23355677788877      788888777653

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=97.69  E-value=0.00041  Score=59.21  Aligned_cols=113  Identities=17%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             cceEEeeCCCcc---cc-cchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCC--CCchhHhhc-----cCCCCEEEEEEc
Q 017187           14 GEMGFTKGGGNI---NW-FPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLS--SAHPGLQPQ-----LSAKRRVIALNK   81 (375)
Q Consensus        14 g~~~~~~~~~~~---~w-fpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s--~~~~~l~~~-----~~~kp~IiVlNK   81 (375)
                      |.-+.++..++.   -| .||.  .-.+.++++ -+.+|+|++|+||.+|-.  ..-.++.++     ..+.|.+++-||
T Consensus        54 Gfnmrk~tkgnvtiklwD~gGq--~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK  131 (186)
T KOG0075|consen   54 GFNMRKVTKGNVTIKLWDLGGQ--PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK  131 (186)
T ss_pred             cceeEEeccCceEEEEEecCCC--ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence            444555555442   34 4554  344555554 689999999999987532  122234333     467999999999


Q ss_pred             CCCCChhhHHHHHHHHh-----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           82 KDLANPNILNKWVRHFD-----SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        82 ~DL~~~~~~~~~~~~~~-----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .|+.+.-.-...+..+.     ...+-++.+||+...+++.+++|+.++.+.
T Consensus       132 ~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  132 IDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             ccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence            99976543334444331     222357889999999999999999887654

>cd04125 RabA_like RabA-like subfamily

Probab=97.68  E-value=0.00022  Score=63.48  Aligned_cols=101  Identities=17%  Similarity=0.054  Sum_probs=63.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc-cCCCCEEEEEEcCCCCChhhH--HHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ-LSAKRRVIALNKKDLANPNIL--NKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~   98 (375)
                      ..||+- +........++.+|.+|+|+|...+.+-.+  ..+   ... ....|+++|.||+|+.+....  .....+.+
T Consensus        55 Dt~g~~-~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~  133 (188)
T cd04125          55 DTNGQE-RFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCD  133 (188)
T ss_pred             ECCCcH-HHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHH
Confidence            356652 222234567889999999999976533211  111   111 234789999999999743211  11122223


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++.+.+.+..
T Consensus       134 ~~~~~~~evSa~~~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         134 SLNIPFFETSAKQSINVEEAFILLVKLIIK  163 (188)
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            346688999999999999999988766543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=97.68  E-value=9.6e-05  Score=63.84  Aligned_cols=85  Identities=14%  Similarity=0.068  Sum_probs=56.3

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..+.++|.+++|+|..++.+-.+  ..   +.+.  ..++|+++|.||+|+.+....  .....+-+..+.+++.+||++
T Consensus        68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (163)
T cd04176          68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKS  147 (163)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCC
Confidence            45789999999999876543211  11   1111  146899999999999653221  111222223456789999999


Q ss_pred             ccCHHHHHHHHHHH
Q 017187          112 RSSVQKLLELVELK  125 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~  125 (375)
                      +.|+.+++.++.+.
T Consensus       148 ~~~v~~l~~~l~~~  161 (163)
T cd04176         148 KTMVNELFAEIVRQ  161 (163)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999887653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.68  E-value=0.0001  Score=60.38  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+|+|.+||||||||++|.+
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~   21 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCG   21 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999999997

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PTZ00369 Ras-like protein; Provisional

Probab=97.68  E-value=7.8e-05  Score=66.67  Aligned_cols=24  Identities=42%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++++|.+|||||||++.+..
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~   27 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQ   27 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999986

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.0002  Score=70.70  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             HHHHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-------CC---CchhHhhc
Q 017187            4 KRIIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-------SS---AHPGLQPQ   69 (375)
Q Consensus         4 ~~~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-------s~---~~~~l~~~   69 (375)
                      ++.-.||+++..++..+...+    |-.-||| +.-.+.|..-+.++|+.|+|+||+.+-       ..   +...|.+.
T Consensus        64 keERerGvTi~~~~~~fet~k~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t  142 (428)
T COG5256          64 KEERERGVTIDVAHSKFETDKYNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART  142 (428)
T ss_pred             hhHHhcceEEEEEEEEeecCCceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh
Confidence            445567887777777777755    4568997 677788888899999999999998761       11   22234444


Q ss_pred             cCCCCEEEEEEcCCCCCh--hhHHH----HHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187           70 LSAKRRVIALNKKDLANP--NILNK----WVRHFDSCK-----QDYIAINAHSRSSVQK  117 (375)
Q Consensus        70 ~~~kp~IiVlNK~DL~~~--~~~~~----~~~~~~~~g-----~~vi~iSa~~~~gvk~  117 (375)
                      ++-..+|+++||+|+++-  +..++    ...+.+..|     .+++++|+.+|.++.+
T Consensus       143 lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         143 LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            666778999999999853  22222    222222334     3589999998877643

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.67  E-value=5.3e-05  Score=64.99  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+||.+++|||||+++|.+
T Consensus         3 rimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            699999999999999999997

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.67  E-value=5.7e-05  Score=80.93  Aligned_cols=60  Identities=27%  Similarity=0.474  Sum_probs=41.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--Ec---cCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IA---HRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~---~~~~~~liDTPGi~  204 (375)
                      .+...|+++|.+|+|||||+++|+..            ....+..+|+|++...+.  +.   ....+.++||||..
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~------------~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe  306 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKT------------QIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE  306 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhc------------cCccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence            45678999999999999999999861            112233467777655332  21   12468999999964

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.66  E-value=7.9e-05  Score=80.48  Aligned_cols=61  Identities=28%  Similarity=0.510  Sum_probs=44.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~  205 (375)
                      .+...|+++|.+|+|||||+++|++.           . ...+..+|+|++...+.+. .+..+.++||||...
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~-----------~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~  349 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKT-----------N-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA  349 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhC-----------C-ccccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence            45678999999999999999999861           1 2233456888877654432 134689999999754

>cd04116 Rab9 Rab9 subfamily

Probab=97.66  E-value=0.0003  Score=61.25  Aligned_cols=97  Identities=12%  Similarity=-0.039  Sum_probs=62.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--------cCCCCEEEEEEcCCCCChhh-HHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--------LSAKRRVIALNKKDLANPNI-LNKWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--------~~~kp~IiVlNK~DL~~~~~-~~~~~~   95 (375)
                      ..||+... .......++.+|++++|+|...+.+...  ..+..+        ..+.|+++|.||+|+..... .++..+
T Consensus        60 D~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  138 (170)
T cd04116          60 DTAGQERF-RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA  138 (170)
T ss_pred             eCCChHHH-HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH
Confidence            47887532 2223456789999999999876532221  111111        13479999999999964322 223333


Q ss_pred             HHhhCC-CcEEEEecCCccCHHHHHHHHHH
Q 017187           96 HFDSCK-QDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        96 ~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      +.++.+ ..++.+||+++.|+.++++.+.+
T Consensus       139 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         139 WCRENGDYPYFETSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HHHHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence            333444 36889999999999999888754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.64  E-value=0.00011  Score=64.34  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++++|.+|||||||++.+.+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~   23 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSK   23 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3699999999999999999986

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04126 Rab20 Rab20 subfamily

Probab=97.64  E-value=0.00018  Score=66.49  Aligned_cols=100  Identities=14%  Similarity=-0.008  Sum_probs=62.4

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc----cCCCCEEEEEEcCCCCCh--------------
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ----LSAKRRVIALNKKDLANP--------------   87 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~----~~~kp~IiVlNK~DL~~~--------------   87 (375)
                      .||+... ..-....+..+|++|+|+|+..+.+-.+.  .+..+    ..+.|+|+|.||+||.+.              
T Consensus        51 t~G~e~~-~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~  129 (220)
T cd04126          51 TAGREQF-HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRV  129 (220)
T ss_pred             CCCcccc-hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccc
Confidence            4666322 12223457899999999999875432221  12111    235789999999999751              


Q ss_pred             -----h--hHHHHHHHHhhCC--------------CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           88 -----N--ILNKWVRHFDSCK--------------QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        88 -----~--~~~~~~~~~~~~g--------------~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                           .  ..++..++.++.+              ..++.+||+++.|+++++..+.+.+..
T Consensus       130 ~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         130 SPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                 0  1122323322222              467899999999999999888766543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03127 Elongation factor Tu; Provisional

Probab=97.64  E-value=0.00012  Score=74.69  Aligned_cols=69  Identities=22%  Similarity=0.314  Sum_probs=46.1

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccc--------cccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKT--------KRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPG  202 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~--------~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPG  202 (375)
                      ....++++++|.+|+|||||+++|.+....    .|+.        ........+|+|++.....+.. +.++.++||||
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG  133 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAE----EGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG  133 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHH----hhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence            366789999999999999999999752100    0111        0111223479999987544433 23688999999


Q ss_pred             CC
Q 017187          203 VL  204 (375)
Q Consensus       203 i~  204 (375)
                      ..
T Consensus       134 h~  135 (447)
T PLN03127        134 HA  135 (447)
T ss_pred             cc
Confidence            85

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.62  E-value=0.00029  Score=78.01  Aligned_cols=101  Identities=20%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh-------------
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI-------------   89 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~-------------   89 (375)
                      +-.-|||..... ........+|++++|+|+...+........+.  ..++|+++|+||+|+.+...             
T Consensus       530 fiDTPGhe~F~~-lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~  608 (1049)
T PRK14845        530 FIDTPGHEAFTS-LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNE  608 (1049)
T ss_pred             EEECCCcHHHHH-HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhh
Confidence            345799854422 22335677999999999987554433322222  34689999999999974211             


Q ss_pred             -----HHHH-------HHHHhhC---------------CCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           90 -----LNKW-------VRHFDSC---------------KQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        90 -----~~~~-------~~~~~~~---------------g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                           .++.       ...+.+.               ..+++++||++|.|+++|+.++....
T Consensus       609 q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        609 QDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence                 0011       0111111               23689999999999999998876543

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.61  E-value=0.00015  Score=65.55  Aligned_cols=84  Identities=12%  Similarity=-0.047  Sum_probs=57.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCCh--------------------h-hHHHH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANP--------------------N-ILNKW   93 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~--------------------~-~~~~~   93 (375)
                      ..++++|++|+|.|...+.+-.+.   ++...   ..+.|+++|.||+||.+.                    . ..++.
T Consensus        83 ~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~  162 (195)
T cd01873          83 FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETG  162 (195)
T ss_pred             ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHH
Confidence            357899999999999876543321   11222   246799999999999631                    0 11222


Q ss_pred             HHHHhhCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           94 VRHFDSCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      .++-++.+..++.+||+++.|++++++.+.+
T Consensus       163 ~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         163 RAVAKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             HHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            2333345677889999999999999887754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.61  E-value=0.00014  Score=64.73  Aligned_cols=57  Identities=19%  Similarity=0.350  Sum_probs=36.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV  203 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi  203 (375)
                      ...++|+++|.+|||||||++.+.. +          ......+..|.  +...+... .-.+.++||||-
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~-~----------~~~~~~pt~g~--~~~~~~~~-~~~~~i~D~~Gq   71 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKL-G----------EIVTTIPTIGF--NVETVEYK-NISFTVWDVGGQ   71 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHcc-C----------CCccccCCcce--eEEEEEEC-CEEEEEEECCCC
Confidence            4557999999999999999999974 1          11222222232  22222222 224789999995

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.61  E-value=0.00015  Score=63.95  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++++|.+|||||||++.+..
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~   24 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFIS   24 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Confidence            36899999999999999999986

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.61  E-value=0.00014  Score=66.21  Aligned_cols=56  Identities=21%  Similarity=0.428  Sum_probs=34.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc---cCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA---HRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~---~~~~~~liDTPGi~~  205 (375)
                      +|+++|.+|||||||++.|..           .+...+  .+.++.....+...   ....+.++||||...
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~-----------~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~   60 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTT-----------GKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK   60 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc-----------CCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence            589999999999999999986           111111  12222222222221   233588999999653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00049 elongation factor Tu; Reviewed

Probab=97.61  E-value=0.00011  Score=73.76  Aligned_cols=69  Identities=20%  Similarity=0.311  Sum_probs=45.4

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG  202 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG  202 (375)
                      ....++++++|.+|+|||||+++|++....    .++..        ........|+|.+.....+. .+.++.++||||
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG   84 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK----KGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG   84 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhh----ccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence            466789999999999999999999862100    00000        00111256899888754442 233688999999


Q ss_pred             CC
Q 017187          203 VL  204 (375)
Q Consensus       203 i~  204 (375)
                      ..
T Consensus        85 ~~   86 (396)
T PRK00049         85 HA   86 (396)
T ss_pred             HH
Confidence            74

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.60  E-value=6.5e-05  Score=79.88  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++++|.+|+|||||+|.|+.
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~   46 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLY   46 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHH
Confidence            5568999999999999999999986

>cd04117 Rab15 Rab15 subfamily

Probab=97.59  E-value=0.00027  Score=61.38  Aligned_cols=96  Identities=13%  Similarity=0.088  Sum_probs=60.7

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhh---c-cCCCCEEEEEEcCCCCChhhH--HHHHHHHhh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQP---Q-LSAKRRVIALNKKDLANPNIL--NKWVRHFDS   99 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~---~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~   99 (375)
                      .+|.. +........+..+|++++|+|...+-+-.+  ..+.+   . ....|+++|.||+||......  ++...+.+.
T Consensus        56 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~  134 (161)
T cd04117          56 TAGQE-RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE  134 (161)
T ss_pred             CCCcH-hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence            45543 222334456789999999999876533211  11111   1 235789999999999654321  222222223


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      .+.+++.+||+++.|+++++.+|.+
T Consensus       135 ~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117         135 YGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            4567899999999999999988754

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.59  E-value=0.00048  Score=72.49  Aligned_cols=98  Identities=18%  Similarity=0.116  Sum_probs=62.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh--------------
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI--------------   89 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~--------------   89 (375)
                      -.-|||-.. .......+..+|++++|+|++............+  ..+.|+++++||+|+.+...              
T Consensus        76 iDTPG~e~f-~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         76 IDTPGHEAF-TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             EECCChHHH-HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            346898543 2333346788999999999987543322222222  35789999999999863210              


Q ss_pred             ---H--------HHHHHHHhhC---------------CCcEEEEecCCccCHHHHHHHHHH
Q 017187           90 ---L--------NKWVRHFDSC---------------KQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        90 ---~--------~~~~~~~~~~---------------g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                         .        .+...++.+.               ..+++++|+.++.|+++|++.+..
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence               0        0111222211               136799999999999999887754

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.58  E-value=0.00011  Score=64.14  Aligned_cols=20  Identities=30%  Similarity=0.745  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      |+++|.+|||||||++.+.+
T Consensus         2 i~ivG~~~vGKTsli~~~~~   21 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSS   21 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999996

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.58  E-value=0.00034  Score=65.75  Aligned_cols=85  Identities=15%  Similarity=0.040  Sum_probs=57.1

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCc--hhHhhc-------------cCCCCEEEEEEcCCCCChh--hHHHHHHHHh-hCCCc
Q 017187           42 RLKISDLVIEVRDSRIPLSSAH--PGLQPQ-------------LSAKRRVIALNKKDLANPN--ILNKWVRHFD-SCKQD  103 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~--~~l~~~-------------~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~-~~g~~  103 (375)
                      .+..+|++|+|+|...+.+-.+  ..+.++             ..++|+|+|.||+|+....  ..++..+++. ..+..
T Consensus        68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~  147 (247)
T cd04143          68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA  147 (247)
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence            4678999999999876532111  111111             1368999999999997421  2233333332 22457


Q ss_pred             EEEEecCCccCHHHHHHHHHHHH
Q 017187          104 YIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       104 vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ++.+||+++.|++++++.+....
T Consensus       148 ~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         148 YFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999987755

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03110 Rab GTPase; Provisional

Probab=97.57  E-value=0.00034  Score=64.17  Aligned_cols=100  Identities=14%  Similarity=0.053  Sum_probs=65.4

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH-HHHHHHH-hh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL-NKWVRHF-DS   99 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~-~~~~~~~-~~   99 (375)
                      .||+.. ........++.+|.+|+|+|.+.+.+..+  ..+..+    ..+.|+++|.||+||...... .+..+.+ ..
T Consensus        68 t~G~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~  146 (216)
T PLN03110         68 TAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK  146 (216)
T ss_pred             CCCcHH-HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH
Confidence            577632 22334456889999999999986543221  112111    136899999999999643221 1122222 23


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+.+++.+||+++.|++++++.+...+.+
T Consensus       147 ~~~~~~e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        147 EGLSFLETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999998776654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.56  E-value=0.00013  Score=69.13  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|+|||||+|+|+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~   21 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLY   21 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999985

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.00012  Score=64.01  Aligned_cols=119  Identities=15%  Similarity=0.152  Sum_probs=86.8

Q ss_pred             cccccceEEeeCCCcccccchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEc
Q 017187           10 GLGLGEMGFTKGGGNINWFPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNK   81 (375)
Q Consensus        10 ~~~~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK   81 (375)
                      -.|++...+.+...+.+.+-+.-++.++.+++. ...|+.||+|+||.++---  ....+...     ..+.|+++.+||
T Consensus        56 tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank  135 (197)
T KOG0076|consen   56 TVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK  135 (197)
T ss_pred             ccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence            347788888888777766666668888888875 6899999999999763111  11112221     568999999999


Q ss_pred             CCCCChhhHHHHHHHHh------hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           82 KDLANPNILNKWVRHFD------SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        82 ~DL~~~~~~~~~~~~~~------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .|+.+....++....+.      +....+.++|+..++|+++-+.|+...++.
T Consensus       136 qd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  136 QDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             hhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence            99987665555554443      223468899999999999999998877654

>smart00053 DYNc Dynamin, GTPase

Probab=97.56  E-value=0.00053  Score=64.13  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             cCHHHHHHHHHHHHhhh--hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc
Q 017187          113 SSVQKLLELVELKLKEV--ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA  190 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~--~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~  190 (375)
                      ..+..|++.+.+.....  ...-...+++++|.+|+||||++|+|.+            .........-.|+....+.+.
T Consensus         2 ~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g------------~~~~~~~~g~~t~~p~~i~l~   69 (240)
T smart00053        2 EKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVG------------RDFLPRGSGIVTRRPLILQLI   69 (240)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhC------------CCccccCCCcccccceEEEcc


Q ss_pred             cC-----------------------------------------------------CcEEEEEcCCCCCCCCCChhHHHHH
Q 017187          191 HR-----------------------------------------------------PSIYVLDTPGVLVPSIPDIETGLKL  217 (375)
Q Consensus       191 ~~-----------------------------------------------------~~~~liDTPGi~~~~~~~~~~~~~l  217 (375)
                      ..                                                     ++++++||||+......+.......
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~  149 (240)
T smart00053       70 NSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEE  149 (240)
T ss_pred             CCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHH


Q ss_pred             HHhhccc
Q 017187          218 ALSGSIK  224 (375)
Q Consensus       218 al~~~i~  224 (375)
                      .+...+.
T Consensus       150 ~i~~lv~  156 (240)
T smart00053      150 QIKDMIK  156 (240)
T ss_pred             HHHHHHH

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.56  E-value=0.0002  Score=63.37  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||++.+..
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~   23 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTT   23 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999985

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.55  E-value=7.1e-05  Score=61.97  Aligned_cols=18  Identities=44%  Similarity=0.693  Sum_probs=16.9

Q ss_pred             EEcCCCCChHHHHHHHHh
Q 017187          140 VVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       140 vvG~pnvGKSsliN~L~~  157 (375)
                      ++|.+|+|||||+|+|.+
T Consensus         1 iiG~~~~GKStl~~~l~~   18 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLG   18 (157)
T ss_pred             CCCcCCCcHHHHHHHHHh
Confidence            589999999999999997

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.55  E-value=0.00021  Score=62.65  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||++++..
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~   22 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTT   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999975

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04126 Rab20 Rab20 subfamily

Probab=97.55  E-value=0.0002  Score=66.16  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||++.+..
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~   22 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYME   22 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            3689999999999999999986

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04133 Rop_like Rop subfamily

Probab=97.55  E-value=0.00023  Score=63.36  Aligned_cols=86  Identities=10%  Similarity=0.023  Sum_probs=58.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChh------------hHHHHHHHHhhCCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPN------------ILNKWVRHFDSCKQ  102 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~------------~~~~~~~~~~~~g~  102 (375)
                      ..++++|.+|+|.|...+.+-.+.   ++..+   ..+.|+++|.||+||.+..            ..++..++-+..+.
T Consensus        68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~  147 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA  147 (176)
T ss_pred             hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence            467899999999999876553321   12222   3468999999999996431            11222223334455


Q ss_pred             -cEEEEecCCccCHHHHHHHHHHHH
Q 017187          103 -DYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       103 -~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                       .++.+||+++.+++++++.+.+.+
T Consensus       148 ~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         148 AAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             CEEEECCCCcccCHHHHHHHHHHHH
Confidence             478999999999999999887654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04177 RSR1 RSR1 subgroup

Probab=97.55  E-value=0.0003  Score=61.29  Aligned_cols=99  Identities=14%  Similarity=0.025  Sum_probs=62.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..|||... ..-....+..+|.+++|+|...+.+-..     ..+.+.  ..+.|+++|.||+|+.+...  .+...+..
T Consensus        55 Dt~G~~~~-~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~  133 (168)
T cd04177          55 DTAGTEQF-TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS  133 (168)
T ss_pred             eCCCcccc-hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH
Confidence            46787542 1223345789999999999876432211     112121  24689999999999975432  11222222


Q ss_pred             hhCC-CcEEEEecCCccCHHHHHHHHHHHH
Q 017187           98 DSCK-QDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        98 ~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ++.+ .+++.+||+++.|++++++++...+
T Consensus       134 ~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         134 QQWGNVPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             HHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            2334 5789999999999999998886543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.54  E-value=0.00021  Score=63.13  Aligned_cols=84  Identities=10%  Similarity=0.033  Sum_probs=55.2

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhh--------------HHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNI--------------LNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~~~  100 (375)
                      ..++.+|++|+|+|...+.+-.+.   .+..+   ..+.|+++|.||+||.+...              .++..++.++.
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  147 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  147 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence            467899999999999876433221   11111   24689999999999964211              11111222233


Q ss_pred             C-CcEEEEecCCccCHHHHHHHHHH
Q 017187          101 K-QDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus       101 g-~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      + ..++.+||+++.|++++++.+.+
T Consensus       148 ~~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         148 GAVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             CCcEEEEecccccCCHHHHHHHHHH
Confidence            4 36789999999999999887754

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=97.53  E-value=0.00021  Score=63.94  Aligned_cols=86  Identities=13%  Similarity=0.023  Sum_probs=57.6

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhHH--------------HHHHHHhhCC
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNILN--------------KWVRHFDSCK  101 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~--------------~~~~~~~~~g  101 (375)
                      .+..+|++|+|.|...+.+-.+.   .+..+   ..+.|+++|.||+||.......              +-.+..++.+
T Consensus        68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN  147 (189)
T ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            46789999999998776433211   12222   3468999999999997543211              1112222223


Q ss_pred             -CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          102 -QDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       102 -~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                       ..++.+||+++.|++++++++.+.+.
T Consensus       148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         148 ALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence             46889999999999999999877654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04135 Tc10 TC10 subfamily

Probab=97.53  E-value=0.00023  Score=62.09  Aligned_cols=84  Identities=11%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCch------hHhhccCCCCEEEEEEcCCCCChhhH--------------HHHHHHHhhCC
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHP------GLQPQLSAKRRVIALNKKDLANPNIL--------------NKWVRHFDSCK  101 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~------~l~~~~~~kp~IiVlNK~DL~~~~~~--------------~~~~~~~~~~g  101 (375)
                      .+..+|++++|+|...+-+..+.      .+.....+.|+++|.||+||.+....              +...++.++.+
T Consensus        68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (174)
T cd04135          68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG  147 (174)
T ss_pred             cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            46799999999998766432111      11112357899999999998643211              11111222334


Q ss_pred             C-cEEEEecCCccCHHHHHHHHHHH
Q 017187          102 Q-DYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       102 ~-~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      . .++.+||+++.|++++++.+...
T Consensus       148 ~~~~~e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         148 AHCYVECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             CCEEEEecCCcCCCHHHHHHHHHHH
Confidence            3 57889999999999998877543

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.52  E-value=0.00022  Score=66.62  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.+|+|||||+|+|+.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~   21 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLY   21 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999986

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.51  E-value=0.00025  Score=62.66  Aligned_cols=84  Identities=11%  Similarity=0.039  Sum_probs=55.5

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhHH-------------HHHH-HHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNILN-------------KWVR-HFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~-------------~~~~-~~~~~  100 (375)
                      ..+.++|++|+|+|...+.+-.+.   .+...   ..+.|+++|.||+||.+.....             +..+ +.++.
T Consensus        68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~  147 (175)
T cd01874          68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL  147 (175)
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence            367899999999999776443221   11111   3468999999999996532111             1111 11223


Q ss_pred             C-CcEEEEecCCccCHHHHHHHHHH
Q 017187          101 K-QDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus       101 g-~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      + ..++.+||+++.|++++++.+..
T Consensus       148 ~~~~~~e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         148 KAVKYVECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHHH
Confidence            3 46899999999999999887754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.51  E-value=0.00039  Score=66.22  Aligned_cols=83  Identities=17%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--h-HHHHHHHHhhCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--I-LNKWVRHFDSCK  101 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~-~~~~~~~~~~~g  101 (375)
                      .-|||.. -...+...+..+|++|+|+|+..........+.+.  ..++|+++++||+|+...+  . .+...+.+....
T Consensus        70 DTPG~~d-f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~  148 (270)
T cd01886          70 DTPGHVD-FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANP  148 (270)
T ss_pred             ECCCcHH-HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCc
Confidence            4699964 33557789999999999999987655443333333  4578999999999997532  1 233333332111


Q ss_pred             C-cEEEEecC
Q 017187          102 Q-DYIAINAH  110 (375)
Q Consensus       102 ~-~vi~iSa~  110 (375)
                      . .++++|+.
T Consensus       149 ~~~~~Pisa~  158 (270)
T cd01886         149 VPLQLPIGEE  158 (270)
T ss_pred             eEEEeccccC
Confidence            1 35666664

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=97.51  E-value=0.00019  Score=68.83  Aligned_cols=63  Identities=29%  Similarity=0.360  Sum_probs=40.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      .....|.+||++|+|||||||+|....... .  . +-.++-    -+|++.  ..+.++..+.+.||-||.+
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~--d-rLFATL----DpT~h~--a~Lpsg~~vlltDTvGFis  238 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-N--D-RLFATL----DPTLHS--AHLPSGNFVLLTDTVGFIS  238 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCc-c--c-hhheec----cchhhh--ccCCCCcEEEEeechhhhh
Confidence            445689999999999999999999622111 0  0 011211    123332  2355666688899999986

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.50  E-value=0.00033  Score=75.83  Aligned_cols=81  Identities=16%  Similarity=0.084  Sum_probs=58.1

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCCCcEEEEecCCccCHHHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHFD-SCKQDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~  120 (375)
                      ..+|+|+.|+|+....  ++..+ .+. ..++|+++|+||+|+.++.......+.+. ..+.+++++|+.++.|++++.+
T Consensus        84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~  161 (772)
T PRK09554         84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL  161 (772)
T ss_pred             cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence            4899999999997632  22222 222 45799999999999975433332233332 4578899999999999999999


Q ss_pred             HHHHHH
Q 017187          121 LVELKL  126 (375)
Q Consensus       121 ~L~~~l  126 (375)
                      .+....
T Consensus       162 ~I~~~~  167 (772)
T PRK09554        162 AIDRHQ  167 (772)
T ss_pred             HHHHhh
Confidence            887654

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.50  E-value=0.00016  Score=65.16  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|||||||+|.+..
T Consensus         1 kv~vvG~~~vGKTsll~~~~~   21 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLY   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999986

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.49  E-value=0.00045  Score=64.29  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc---hh---HhhccCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH---PG---LQPQLSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~---~~---l~~~~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~  100 (375)
                      ..+..+|++|+|.|...+.+-.+   .+   +.+...+.|+++|.||+||.+.              ...++..++.++.
T Consensus        80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~  159 (232)
T cd04174          80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL  159 (232)
T ss_pred             HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc
Confidence            45789999999999987654332   11   2222346799999999999531              1122333333445


Q ss_pred             CC-cEEEEecCCcc-CHHHHHHHHHHHH
Q 017187          101 KQ-DYIAINAHSRS-SVQKLLELVELKL  126 (375)
Q Consensus       101 g~-~vi~iSa~~~~-gvk~Ll~~L~~~l  126 (375)
                      +. .++.+||+++. ++++++..+...+
T Consensus       160 ~~~~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         160 GAEVYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             CCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence            66 47889999997 7999988876654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01882 BMS1 Bms1

Probab=97.49  E-value=0.00024  Score=65.70  Aligned_cols=58  Identities=26%  Similarity=0.495  Sum_probs=38.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ..+..++++|.||+|||||+|+|.+.          .....++...|+..    +.......+.++||||..
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~----------~~~~~~~~~~g~i~----i~~~~~~~i~~vDtPg~~   94 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKN----------YTKQNISDIKGPIT----VVTGKKRRLTFIECPNDI   94 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh----------cccCccccccccEE----EEecCCceEEEEeCCchH
Confidence            55678999999999999999999862          11233334455311    111234468999999853

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.48  E-value=0.00023  Score=62.85  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+..+..
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~   23 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTT   23 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999885

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PRK12736 elongation factor Tu; Reviewed

Probab=97.47  E-value=0.00024  Score=71.32  Aligned_cols=69  Identities=19%  Similarity=0.279  Sum_probs=45.0

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPG  202 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPG  202 (375)
                      ....++++++|.+++|||||+++|++....    .|+..        .....-..|+|.+.....+.. ...+.++||||
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG   84 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE----RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG   84 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhh----hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC
Confidence            466789999999999999999999862100    01100        001112568898886544432 33688999999


Q ss_pred             CC
Q 017187          203 VL  204 (375)
Q Consensus       203 i~  204 (375)
                      ..
T Consensus        85 h~   86 (394)
T PRK12736         85 HA   86 (394)
T ss_pred             HH
Confidence            54

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00069  Score=67.44  Aligned_cols=121  Identities=18%  Similarity=0.160  Sum_probs=81.6

Q ss_pred             HHHHhccc--ccceEEeeCCCc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC---chhHhhccCCCCEEE
Q 017187            5 RIIKKGLG--LGEMGFTKGGGN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA---HPGLQPQLSAKRRVI   77 (375)
Q Consensus         5 ~~~~~~~~--~g~~~~~~~~~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~---~~~l~~~~~~kp~Ii   77 (375)
                      +--+||++  +|..-++.....  +-.-||| .+-++.|...+.-+|..++|+|+.+.+..+   .-.+.+.++.+..++
T Consensus        30 EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~gii  108 (447)
T COG3276          30 EEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGII  108 (447)
T ss_pred             hhhhcCceEeeeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEE
Confidence            44456653  233334443333  4567999 566677778888999999999997544432   223333355556699


Q ss_pred             EEEcCCCCChhhHHHHHHHHh-h---CCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           78 ALNKKDLANPNILNKWVRHFD-S---CKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        78 VlNK~DL~~~~~~~~~~~~~~-~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      |+||+|.+++..++...+.+. .   ...+++.+|+.++.|+++|.+.|.+..
T Consensus       109 vltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         109 VLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             EEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence            999999998765544333331 1   123678899999999999999998887

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.46  E-value=0.00026  Score=71.00  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhh----hcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQI----ALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVL  204 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~----g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~  204 (375)
                      ....++++++|.+++|||||+++|++.    |.......---.........|+|.+.....+.. +..+.++||||..
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            466789999999999999999999852    111000000000001112368898876554433 2358899999975

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04134 Rho3 Rho3 subfamily

Probab=97.45  E-value=0.00028  Score=63.11  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|||||||++.+.+
T Consensus         2 kivivG~~~vGKTsli~~~~~   22 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTR   22 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999986

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04131 Rnd Rnd subfamily

Probab=97.45  E-value=0.00034  Score=62.21  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||++.+.+
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~   23 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAK   23 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999986

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.44  E-value=0.00025  Score=74.57  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +...|.++|.+|+|||||+|+|++
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~   28 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRG   28 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999986

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.44  E-value=0.00022  Score=76.67  Aligned_cols=70  Identities=17%  Similarity=0.094  Sum_probs=42.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhh-hccccccccccc-ccccC------CCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTK-RATVG------PLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~-~~~v~------~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      -.+|+++|.+|+|||||+|+|+.. |.+..  .++.. -..+.      ...|+|.+.....+ ..+..+.++||||...
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHK--IGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccc--cccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            348999999999999999999852 21110  00000 00111      14577877653222 2334689999999975


Q ss_pred             C
Q 017187          206 P  206 (375)
Q Consensus       206 ~  206 (375)
                      .
T Consensus        88 ~   88 (689)
T TIGR00484        88 F   88 (689)
T ss_pred             h
Confidence            3

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.44  E-value=0.00016  Score=64.72  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=40.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhccccccccc------ccccccCCCCCeeeeeEEEEEc---cCCcEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEK------TKRATVGPLPGVTQDIAGFKIA---HRPSIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k------~~~~~v~~~pg~T~~~~~~~i~---~~~~~~liDTPGi~  204 (375)
                      ..+|+++|..++|||||+++|.............      ..........|.|.+.......   ....+.++||||-.
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999998622111000000      0001111223555555443333   33468999999963

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01892 Miro2 Miro2 subfamily

Probab=97.43  E-value=0.0004  Score=60.91  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..++++++|.+|||||||++.+.+
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~   26 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLG   26 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhC
Confidence            3567899999999999999999986

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.42  E-value=0.00025  Score=74.68  Aligned_cols=59  Identities=22%  Similarity=0.328  Sum_probs=39.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGV  203 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi  203 (375)
                      +.|+++|.+|+|||||+|+|.+...         ........+|+|.+.....+.. +..+.++||||.
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~---------d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh   60 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAA---------DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH   60 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccC---------cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence            3689999999999999999986210         0111122468888775322221 235789999995

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.42  E-value=0.00047  Score=60.21  Aligned_cols=85  Identities=15%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---h---HhhccCCCCEEEEEEcCCCCChhhHHH-----------H---HHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---G---LQPQLSAKRRVIALNKKDLANPNILNK-----------W---VRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~---l~~~~~~kp~IiVlNK~DL~~~~~~~~-----------~---~~~~~~~  100 (375)
                      ..+.++|++++|.|...+.+-.+.   .   +.+...+.|+++|.||+|+.+......           +   .++....
T Consensus        68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~  147 (175)
T cd01870          68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI  147 (175)
T ss_pred             cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence            356899999999998765321111   1   111124789999999999875432111           1   1111122


Q ss_pred             C-CcEEEEecCCccCHHHHHHHHHHH
Q 017187          101 K-QDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       101 g-~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      + ..++.+||+++.|++++++++.+.
T Consensus       148 ~~~~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         148 GAFGYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             CCcEEEEeccccCcCHHHHHHHHHHH
Confidence            3 368899999999999999988654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.41  E-value=0.0003  Score=63.94  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||+|+|.+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~   27 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVG   27 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhc
Confidence            7899999999999999999997

>cd01875 RhoG RhoG subfamily

Probab=97.40  E-value=0.00052  Score=61.57  Aligned_cols=98  Identities=13%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             cchhHHHHHHHHH-HHhhhcCeEEEEEeCCCCCCCCch--hHhh-c---cCCCCEEEEEEcCCCCChhh-----------
Q 017187           28 FPGHMAAATRAIK-HRLKISDLVIEVRDSRIPLSSAHP--GLQP-Q---LSAKRRVIALNKKDLANPNI-----------   89 (375)
Q Consensus        28 fpgHm~k~~~~i~-~~l~~~DlVI~VvDar~p~s~~~~--~l~~-~---~~~kp~IiVlNK~DL~~~~~-----------   89 (375)
                      .+|+..-  +.++ ..+.++|++|+|.|...+.+-.+-  .+.. .   ..+.|+++|.||+||.+...           
T Consensus        58 t~G~e~~--~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~  135 (191)
T cd01875          58 TAGQEEY--DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQA  135 (191)
T ss_pred             CCCchhh--hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence            5777432  2333 357899999999999876443221  1111 1   35689999999999964321           


Q ss_pred             ---HHHHHHHHhhCC-CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           90 ---LNKWVRHFDSCK-QDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        90 ---~~~~~~~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                         .++..++.++.+ ..++.+||+++.|++++++.+.+.+.
T Consensus       136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         136 PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence               011111222334 46889999999999999998876553

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.39  E-value=0.00094  Score=66.86  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=74.5

Q ss_pred             CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh---hhHHHHHHHH
Q 017187           23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP---NILNKWVRHF   97 (375)
Q Consensus        23 ~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~---~~~~~~~~~~   97 (375)
                      .+|-.-|||...+- +.++.++.+|-|++++||...+..+-..+...  ..+-+.|+|+||+|-.+.   +.+.+..+.|
T Consensus        70 INIvDTPGHADFGG-EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf  148 (603)
T COG1217          70 INIVDTPGHADFGG-EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLF  148 (603)
T ss_pred             EEEecCCCcCCccc-hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence            34556899966554 47788999999999999987544443333332  456778999999998642   3344444555


Q ss_pred             h-------hCCCcEEEEecCCc----------cCHHHHHHHHHHHHhhh
Q 017187           98 D-------SCKQDYIAINAHSR----------SSVQKLLELVELKLKEV  129 (375)
Q Consensus        98 ~-------~~g~~vi~iSa~~~----------~gvk~Ll~~L~~~l~~~  129 (375)
                      -       ++..++++.|+.+|          .++..|.+.|.++++..
T Consensus       149 ~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         149 VELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             HHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence            2       34568889998775          35788899999888765

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.38  E-value=0.00044  Score=59.52  Aligned_cols=21  Identities=43%  Similarity=0.676  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.++||||||++.+.+
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~   21 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLIN   21 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999987

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.38  E-value=0.0003  Score=66.12  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|.+.+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~   22 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLG   22 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHc
Confidence            3699999999999999999985

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04169 RF3 RF3 subfamily

Probab=97.38  E-value=0.00042  Score=65.89  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.+|+|||||+|+|+.
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~   24 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLL   24 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999985

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.36  E-value=0.00055  Score=62.47  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++++|.+|||||||++.+..
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~   31 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLT   31 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999986653

>PRK12739 elongation factor G; Reviewed

Probab=97.36  E-value=0.0016  Score=70.17  Aligned_cols=79  Identities=20%  Similarity=0.191  Sum_probs=54.9

Q ss_pred             HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEc
Q 017187            8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNK   81 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK   81 (375)
                      .||+++..........+    +-.-|||.. -...+...+..+|++|+|+|+..+.......+.+.  ..++|.|+++||
T Consensus        56 ~rgiti~~~~~~~~~~~~~i~liDTPG~~~-f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK  134 (691)
T PRK12739         56 ERGITITSAATTCFWKGHRINIIDTPGHVD-FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNK  134 (691)
T ss_pred             hcCCCccceeEEEEECCEEEEEEcCCCHHH-HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence            56665554443332222    335699975 44468889999999999999988765544444443  457899999999


Q ss_pred             CCCCCh
Q 017187           82 KDLANP   87 (375)
Q Consensus        82 ~DL~~~   87 (375)
                      +|+...
T Consensus       135 ~D~~~~  140 (691)
T PRK12739        135 MDRIGA  140 (691)
T ss_pred             CCCCCC
Confidence            999854

>PRK00007 elongation factor G; Reviewed

Probab=97.35  E-value=0.00032  Score=75.42  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=41.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh-hhccccccccccc----c---cccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ-IALSRFPVQEKTK----R---ATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k~~----~---~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      -.+|+++|.+|+|||||+|+|+. .|.+..  .|+..    .   ...-...|+|.+.....+ ..+..+.++||||...
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHK--IGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccc--cccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            45899999999999999999974 221110  00000    0   000125678877653222 2344689999999754

>cd04120 Rab12 Rab12 subfamily

Probab=97.35  E-value=0.00044  Score=62.94  Aligned_cols=22  Identities=32%  Similarity=0.661  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~   22 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTD   22 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHh
Confidence            3689999999999999999985

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04131 Rnd Rnd subfamily

Probab=97.34  E-value=0.00061  Score=60.58  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=55.5

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---h---HhhccCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---G---LQPQLSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~---l~~~~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~  100 (375)
                      ..+..+|++|+|+|...+.+-.+.   .   +.+.....|+++|.||+||.+.              -..++..++-++.
T Consensus        68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~  147 (178)
T cd04131          68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL  147 (178)
T ss_pred             hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence            357899999999999776543321   1   1111356899999999999531              0112222333344


Q ss_pred             CC-cEEEEecCCccC-HHHHHHHHHH
Q 017187          101 KQ-DYIAINAHSRSS-VQKLLELVEL  124 (375)
Q Consensus       101 g~-~vi~iSa~~~~g-vk~Ll~~L~~  124 (375)
                      +. .++.+||+++.+ ++++...+.+
T Consensus       148 ~~~~~~E~SA~~~~~~v~~~F~~~~~  173 (178)
T cd04131         148 GAEIYLECSAFTSEKSVRDIFHVATM  173 (178)
T ss_pred             CCCEEEECccCcCCcCHHHHHHHHHH
Confidence            54 678999999985 9998887765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01882 BMS1 Bms1

Probab=97.33  E-value=0.001  Score=61.51  Aligned_cols=83  Identities=19%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EEEEcCCCCChhh-HHH----HHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IALNKKDLANPNI-LNK----WVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iVlNK~DL~~~~~-~~~----~~~~~   97 (375)
                      -..||++    ..+.+.++.+|+|++|+|++.+.......+...  ..++|.+ +|+||+|+.++.. .++    ..+.+
T Consensus        88 vDtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~  163 (225)
T cd01882          88 IECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF  163 (225)
T ss_pred             EeCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHH
Confidence            3578876    445566789999999999987766555444444  2457754 5999999974321 222    22212


Q ss_pred             h---hCCCcEEEEecCCc
Q 017187           98 D---SCKQDYIAINAHSR  112 (375)
Q Consensus        98 ~---~~g~~vi~iSa~~~  112 (375)
                      .   -.+.+++++|+++.
T Consensus       164 ~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         164 WTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             HHhhCCCCcEEEEeeccC
Confidence            1   12458999998876

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK12739 elongation factor G; Reviewed

Probab=97.33  E-value=0.00032  Score=75.36  Aligned_cols=65  Identities=23%  Similarity=0.206  Sum_probs=42.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh-hhcccccccccccccccC------------CCCCeeeeeEEEEE-ccCCcEEEEE
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ-IALSRFPVQEKTKRATVG------------PLPGVTQDIAGFKI-AHRPSIYVLD  199 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k~~~~~v~------------~~pg~T~~~~~~~i-~~~~~~~liD  199 (375)
                      .-.+|+++|.+|+|||||+|+|+. .|.+.       +...+.            ...|+|.+.....+ ..+..+.++|
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~-------~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liD   79 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSH-------KIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIID   79 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCcc-------ccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEc
Confidence            345799999999999999999975 22211       001111            25577877653222 2344688999


Q ss_pred             cCCCCC
Q 017187          200 TPGVLV  205 (375)
Q Consensus       200 TPGi~~  205 (375)
                      |||...
T Consensus        80 TPG~~~   85 (691)
T PRK12739         80 TPGHVD   85 (691)
T ss_pred             CCCHHH
Confidence            999753

>cd04167 Snu114p Snu114p subfamily

Probab=97.32  E-value=0.00084  Score=61.34  Aligned_cols=59  Identities=27%  Similarity=0.252  Sum_probs=41.9

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA   85 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~   85 (375)
                      -.-|||.. ....+...+..+|++|+|+|+....+.....+.+.  ..++|.++|+||+|++
T Consensus        76 iDtpG~~~-f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          76 IDTPGHVN-FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             EECCCCcc-hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            34699853 34556678899999999999976654432222222  3468999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.31  E-value=0.00074  Score=60.34  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---hHhh---ccCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---GLQP---QLSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~---~~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~  100 (375)
                      ..++++|++|+|+|...+.+-.+-   .+..   .....|+++|.||+||.+.              -..++..++-++.
T Consensus        72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~  151 (182)
T cd04172          72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI  151 (182)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence            357899999999998776443221   1111   1346899999999999531              1112233333345


Q ss_pred             CC-cEEEEecCCccC-HHHHHHHHHHH
Q 017187          101 KQ-DYIAINAHSRSS-VQKLLELVELK  125 (375)
Q Consensus       101 g~-~vi~iSa~~~~g-vk~Ll~~L~~~  125 (375)
                      +. .++.+||+++.+ ++++...+.+.
T Consensus       152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         152 GAATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             CCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence            64 788999999998 99988876553

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04128 Spg1 Spg1p

Probab=97.31  E-value=0.0006  Score=60.79  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+|||||||++.+..
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~   22 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVE   22 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04169 RF3 RF3 subfamily

Probab=97.30  E-value=0.0017  Score=61.72  Aligned_cols=80  Identities=16%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEE
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALN   80 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlN   80 (375)
                      .+|++.+...+......+    +-..|||-.. ...++..+..+|.+|+|+|+..........+.+.  ..++|+++++|
T Consensus        53 ~~rg~si~~~~~~~~~~~~~i~liDTPG~~df-~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvN  131 (267)
T cd04169          53 KQRGISVTSSVMQFEYRDCVINLLDTPGHEDF-SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFIN  131 (267)
T ss_pred             HhCCCCeEEEEEEEeeCCEEEEEEECCCchHH-HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEE
Confidence            345554444433333333    2337998543 3456778899999999999986544332233333  35789999999


Q ss_pred             cCCCCCh
Q 017187           81 KKDLANP   87 (375)
Q Consensus        81 K~DL~~~   87 (375)
                      |+|+...
T Consensus       132 K~D~~~a  138 (267)
T cd04169         132 KLDREGR  138 (267)
T ss_pred             CCccCCC
Confidence            9998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.30  E-value=0.00068  Score=58.95  Aligned_cols=84  Identities=14%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCC--hh-hHHHHHHHH-hhC-CCcEEEEe
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLAN--PN-ILNKWVRHF-DSC-KQDYIAIN  108 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~--~~-~~~~~~~~~-~~~-g~~vi~iS  108 (375)
                      ...+.+|++++|.|...+.+-.+  ..+...     ..+.|+++|.||+||..  +. ...+..+.+ ++. +..++.+|
T Consensus        61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  140 (158)
T cd04103          61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC  140 (158)
T ss_pred             hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence            34578999999999887644332  111222     14579999999999842  11 112222222 232 36789999


Q ss_pred             cCCccCHHHHHHHHHH
Q 017187          109 AHSRSSVQKLLELVEL  124 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~  124 (375)
                      |+++.|++++++.+.+
T Consensus       141 Ak~~~~i~~~f~~~~~  156 (158)
T cd04103         141 ATYGLNVERVFQEAAQ  156 (158)
T ss_pred             cCCCCCHHHHHHHHHh
Confidence            9999999999887754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04121 Rab40 Rab40 subfamily

Probab=97.29  E-value=0.00065  Score=61.13  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.+|||||||++.+..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~   28 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQD   28 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999986

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.29  E-value=0.00023  Score=65.44  Aligned_cols=68  Identities=22%  Similarity=0.227  Sum_probs=42.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh-hhcccccc----------cccc--------cccccCCCCCeeeeeEEEEE-ccCCcEE
Q 017187          137 LVMVVGVPNVGKSALINSIHQ-IALSRFPV----------QEKT--------KRATVGPLPGVTQDIAGFKI-AHRPSIY  196 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~-~g~~~~~~----------~~k~--------~~~~v~~~pg~T~~~~~~~i-~~~~~~~  196 (375)
                      +|+++|.+++|||||+.+|+. .|.+....          .|+.        .........|+|++...+.+ ..+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            478999999999999999875 22221100          0000        01112235688988875443 2344689


Q ss_pred             EEEcCCCC
Q 017187          197 VLDTPGVL  204 (375)
Q Consensus       197 liDTPGi~  204 (375)
                      ++||||..
T Consensus        81 liDtpG~~   88 (219)
T cd01883          81 ILDAPGHR   88 (219)
T ss_pred             EEECCChH
Confidence            99999974

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.26  E-value=0.0012  Score=61.62  Aligned_cols=59  Identities=24%  Similarity=0.150  Sum_probs=43.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLAN   86 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~   86 (375)
                      .-|||.. ....+...++.+|.+++|+|+..........+.+.  ..++|+++++||+|+..
T Consensus        70 DTPG~~~-f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~  130 (237)
T cd04168          70 DTPGHMD-FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG  130 (237)
T ss_pred             eCCCccc-hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence            3599953 44567788999999999999987654332233332  35789999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PLN03126 Elongation factor Tu; Provisional

Probab=97.24  E-value=0.00079  Score=69.16  Aligned_cols=74  Identities=19%  Similarity=0.218  Sum_probs=44.9

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhh-hcccccccccc---cccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKT---KRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~---~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      ....++++++|.+|+|||||+++|+.. +.+......+.   .........|+|.+.....+ ..+..+.++||||...
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            366789999999999999999999851 11110000000   00112233578877654333 2334688999999743

>cd04129 Rho2 Rho2 subfamily

Probab=97.23  E-value=0.00072  Score=60.28  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++++|.+|||||||+|.+..
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~   23 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTL   23 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999984

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.22  E-value=0.0011  Score=61.71  Aligned_cols=49  Identities=22%  Similarity=0.180  Sum_probs=38.3

Q ss_pred             CCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           73 KRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        73 kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +|.++|+||+|+++.+..+.+.     ....++++||+++.|++++.+.+.+.+
T Consensus       177 ~p~iiV~NK~Dl~~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         177 IPCLYVYNKIDLISIEELDLLA-----RQPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eeEEEEEECccCCCHHHHHHHh-----cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            5889999999998766554321     123578999999999999999887765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.00071  Score=68.15  Aligned_cols=95  Identities=14%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc--------------CCCCEEEEEEcCCCCChhhHHHH--HH
Q 017187           32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL--------------SAKRRVIALNKKDLANPNILNKW--VR   95 (375)
Q Consensus        32 m~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~--------------~~kp~IiVlNK~DL~~~~~~~~~--~~   95 (375)
                      -.-++++.++.+.++|+|++|+||....++.+..+.+.+              ..++.|++.||+|++++-....|  +.
T Consensus       335 E~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~  414 (531)
T KOG1191|consen  335 EALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV  414 (531)
T ss_pred             HHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee
Confidence            345889999999999999999999665555544433331              23789999999999976221122  22


Q ss_pred             HHhhC---CCcE-EEEecCCccCHHHHHHHHHHHH
Q 017187           96 HFDSC---KQDY-IAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        96 ~~~~~---g~~v-i~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      |....   ..++ .++||.+++|++.|...+.+.+
T Consensus       415 ~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~  449 (531)
T KOG1191|consen  415 YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV  449 (531)
T ss_pred             ccccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence            22221   2234 4589999999999888876654

>cd04129 Rho2 Rho2 subfamily

Probab=97.21  E-value=0.00076  Score=60.13  Aligned_cols=87  Identities=13%  Similarity=0.077  Sum_probs=56.2

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCch---hHhh---ccCCCCEEEEEEcCCCCChhh------------HHHHHHHHhhCCC-
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHP---GLQP---QLSAKRRVIALNKKDLANPNI------------LNKWVRHFDSCKQ-  102 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~---~l~~---~~~~kp~IiVlNK~DL~~~~~------------~~~~~~~~~~~g~-  102 (375)
                      .+..+|++++|.|...+.+..+.   .+..   .....|+++|.||+|+.+...            .+....+.++.+. 
T Consensus        69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (187)
T cd04129          69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK  148 (187)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence            46799999999998654322110   1111   134689999999999854210            1111112223343 


Q ss_pred             cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          103 DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       103 ~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .++.+||+++.|++++++.+.+.+..
T Consensus       149 ~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         149 KYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             EEEEccCCCCCCHHHHHHHHHHHHhc
Confidence            68899999999999999999876543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.20  E-value=0.00084  Score=62.10  Aligned_cols=59  Identities=20%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA   85 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~   85 (375)
                      -.-|||.. -...+...+..+|.+++|+|+..+.......+.+.  ..++|+++|+||+|+.
T Consensus        78 iDTPG~~~-f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          78 IDSPGHVD-FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             ECCCCccc-cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            35799964 45667888999999999999987665443333333  3468999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.20  E-value=0.00072  Score=68.51  Aligned_cols=72  Identities=22%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh-hhccccc----------ccccc--------cccccCCCCCeeeeeEEEEEcc-C
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ-IALSRFP----------VQEKT--------KRATVGPLPGVTQDIAGFKIAH-R  192 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~----------~~~k~--------~~~~v~~~pg~T~~~~~~~i~~-~  192 (375)
                      ...++++++|.+++|||||+++|+. .|.+...          ..|+.        .........|+|.+.....+.. .
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            5678999999999999999999985 1222100          00000        0001112458898887544432 2


Q ss_pred             CcEEEEEcCCCC
Q 017187          193 PSIYVLDTPGVL  204 (375)
Q Consensus       193 ~~~~liDTPGi~  204 (375)
                      ..+.++||||..
T Consensus        85 ~~i~iiDtpGh~   96 (426)
T TIGR00483        85 YEVTIVDCPGHR   96 (426)
T ss_pred             eEEEEEECCCHH
Confidence            358899999953

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.18  E-value=0.00065  Score=71.91  Aligned_cols=58  Identities=21%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--EccCCcEEEEEcCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IAHRPSIYVLDTPGV  203 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~~~~~~~liDTPGi  203 (375)
                      .|+++|.+|+|||||+|+|.+...         .........|.|.+.....  ..++..+.++||||.
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~---------dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh   61 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNA---------DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH   61 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---------ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence            588999999999999999986210         1112223357887765322  223345789999997

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.004  Score=60.32  Aligned_cols=101  Identities=27%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC---CCCchhHhhccCCCCEEEEEEcCCCCChhhH----HHHH----
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL---SSAHPGLQPQLSAKRRVIALNKKDLANPNIL----NKWV----   94 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~---s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~----~~~~----   94 (375)
                      -..||| +.-+|.+.....-.|+.++|+|+....   +.++-.+.+ +.-++.++|+||+|+.++...    ++..    
T Consensus        75 vDCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~-~~c~klvvvinkid~lpE~qr~ski~k~~kk~~  152 (522)
T KOG0461|consen   75 VDCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-LLCKKLVVVINKIDVLPENQRASKIEKSAKKVR  152 (522)
T ss_pred             EeCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhh-hhccceEEEEeccccccchhhhhHHHHHHHHHH
Confidence            468999 455666666677789999999987543   333333333 334678999999999876432    2222    


Q ss_pred             HHHhhC----CCcEEEEecCCc----cCHHHHHHHHHHHHhh
Q 017187           95 RHFDSC----KQDYIAINAHSR----SSVQKLLELVELKLKE  128 (375)
Q Consensus        95 ~~~~~~----g~~vi~iSa~~~----~gvk~Ll~~L~~~l~~  128 (375)
                      +-++..    +.+++.+|+..|    +.+.+|.+.+...+.+
T Consensus       153 KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  153 KTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             HHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            223222    247899999998    6778888877776644

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.15  E-value=0.00089  Score=61.91  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+|+|.+|||||||++.+..
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~   23 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAK   23 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999986

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04167 Snu114p Snu114p subfamily

Probab=97.14  E-value=0.00045  Score=63.12  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.+|+|||||+++|..
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~   22 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIE   22 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=97.13  E-value=0.001  Score=60.60  Aligned_cols=22  Identities=45%  Similarity=0.667  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.++||||||++.+.+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~   22 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICK   22 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999996

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.12  E-value=0.0011  Score=58.59  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV  203 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi  203 (375)
                      ....+|+++|.+|+||||+++.|..           .....+.++-|..  ...+...+ -.+.++|.+|=
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~-----------~~~~~~~pT~g~~--~~~i~~~~-~~~~~~d~gG~   68 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN-----------GEISETIPTIGFN--IEEIKYKG-YSLTIWDLGGQ   68 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS-----------SSEEEEEEESSEE--EEEEEETT-EEEEEEEESSS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh-----------ccccccCcccccc--cceeeeCc-EEEEEEecccc
Confidence            6789999999999999999999985           1112222222222  22333332 35889999995

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.10  E-value=0.00061  Score=63.51  Aligned_cols=60  Identities=28%  Similarity=0.371  Sum_probs=44.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      -++.++|+|.|||||+++.|.+            ..+.|.+.-+||-... +..-.+.+.+.+.|.|||.+-.
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g------------~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiega  120 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTG------------TFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGA  120 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcC------------CCCccccccceeEEEecceEeccccceeeecCcchhccc
Confidence            3789999999999999999996            3355556666664332 3322455679999999998753

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.09  E-value=0.0014  Score=58.48  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++++|.+|||||||++.+..
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~   27 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAK   27 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999986

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.09  E-value=0.00043  Score=61.89  Aligned_cols=58  Identities=21%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      -.|+++|.+|+||++|+..|.. +        +...+.+|-.|..+-..   .-.....+.+||+||-.-
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~-~--------~~~~T~tS~e~n~~~~~---~~~~~~~~~lvD~PGH~r   61 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVN-G--------KTVPTVTSMENNIAYNV---NNSKGKKLRLVDIPGHPR   61 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHH-S--------S---B---SSEEEECCG---SSTCGTCECEEEETT-HC
T ss_pred             ceEEEEcCCCCCHHHHHHHHhc-C--------CcCCeeccccCCceEEe---ecCCCCEEEEEECCCcHH
Confidence            4699999999999999999996 1        11112222222111111   012334689999999754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.08  E-value=0.0013  Score=56.57  Aligned_cols=86  Identities=19%  Similarity=0.136  Sum_probs=58.2

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhH---hhccC-CCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGL---QPQLS-AKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~~~-~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..+.++|.+|+|.|...+.+-.+  ..+   ..... ..|+++|.||+|+.+...  .++..++.++.+..++.+|++++
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  146 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG  146 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence            45889999999999876432211  111   11123 578999999999986322  22333344455678899999999


Q ss_pred             cCHHHHHHHHHHHH
Q 017187          113 SSVQKLLELVELKL  126 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l  126 (375)
                      .++.+++..+.+.+
T Consensus       147 ~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  147 ENVKEIFQELIRKI  160 (162)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999888776543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04133 Rop_like Rop subfamily

Probab=97.08  E-value=0.0013  Score=58.39  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.++||||||++.+..
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~   23 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTS   23 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5799999999999999999986

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.06  E-value=0.00086  Score=68.92  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++++|.+|+|||||++.|+.
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~   49 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLH   49 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHH
Confidence            5678999999999999999999875

>PRK12740 elongation factor G; Reviewed

Probab=97.06  E-value=0.0032  Score=67.47  Aligned_cols=60  Identities=23%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCC
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLAN   86 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~   86 (375)
                      -.-|||.. ....+...+..+|++++|+|+..........+.+.  ..++|.++|+||+|+..
T Consensus        65 iDtPG~~~-~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         65 IDTPGHVD-FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             EECCCcHH-HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            45799964 33456678899999999999987654333222222  35789999999999874

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.06  E-value=0.0028  Score=57.74  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc-----hhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH-----PGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      ..+..+|.+++|+|.....+-.+     ..+.+...+.|+++|.||+|+.+.....+..++.+..+..++.+|++++.|+
T Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  156 (215)
T PTZ00132         77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNF  156 (215)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            45678999999999875433211     0111123467899999999997543323334444455667889999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCC
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPN  145 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pn  145 (375)
                      ++.+.++.+.+..      ...+.++.-|=
T Consensus       157 ~~~f~~ia~~l~~------~p~~~~ldEp~  180 (215)
T PTZ00132        157 EKPFLWLARRLTN------DPNLVFVGAPA  180 (215)
T ss_pred             HHHHHHHHHHHhh------cccceecCCcc
Confidence            9988877665532      33577777665

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.0039  Score=56.38  Aligned_cols=102  Identities=9%  Similarity=0.016  Sum_probs=73.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hH---hhc-cCCCCEEEEEEcCCCCChhhH--HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GL---QPQ-LSAKRRVIALNKKDLANPNIL--NKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l---~~~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~   97 (375)
                      -|--.-+.+...-+..++..|+.|++|.|.....+.+|.  ++   .+. ..+.|.++|-||+|+..+-.+  +.-.++-
T Consensus        65 iWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA  144 (207)
T KOG0078|consen   65 IWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALA  144 (207)
T ss_pred             EEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHH
Confidence            687777788888888999999999999998765554431  11   111 246899999999999863222  2222333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+.|...+.+||+++.++.+..-.|...+.
T Consensus       145 ~e~G~~F~EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  145 REYGIKFFETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             HHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence            466889999999999999887766655544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.05  E-value=0.002  Score=63.03  Aligned_cols=84  Identities=10%  Similarity=0.065  Sum_probs=52.7

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHH----HHhh-------CCCcEEEEec
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVR----HFDS-------CKQDYIAINA  109 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~----~~~~-------~g~~vi~iSa  109 (375)
                      ....+|++++|++.   .+..+.+.... .....-++|+||+|+.+.........    .+.-       ...+++++||
T Consensus       166 i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA  242 (332)
T PRK09435        166 VAGMVDFFLLLQLP---GAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSA  242 (332)
T ss_pred             HHHhCCEEEEEecC---CchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEEC
Confidence            46689999998762   22222111111 11223489999999986543322222    2211       1137899999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .++.|+++|.+.+.++.+.
T Consensus       243 ~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        243 LEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988754

>PRK09866 hypothetical protein; Provisional

Probab=97.04  E-value=0.0012  Score=69.05  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+.++++|.+|+|||||+|+|.+
T Consensus        68 ~~~~valvG~sgaGKSTLiNaL~G   91 (741)
T PRK09866         68 LEMVLAIVGTMKAGKSTTINAIVG   91 (741)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC
Confidence            448999999999999999999997

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.03  E-value=0.0015  Score=60.86  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||++.+..
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~   35 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAK   35 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhc
Confidence            3467899999999999999999986

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=97.01  E-value=0.002  Score=57.78  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++++|.+|||||||++.+..
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~   25 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTT   25 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999885

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PRK00007 elongation factor G; Reviewed

Probab=97.00  E-value=0.0024  Score=68.75  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=47.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN   88 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~   88 (375)
                      .-|||..... .+...+..+|++|+|+|+..........+.+.  ..++|+|+++||+|+.+..
T Consensus        81 DTPG~~~f~~-ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         81 DTPGHVDFTI-EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             eCCCcHHHHH-HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence            4599975444 68889999999999999988766655555444  4578999999999998654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0012  Score=58.86  Aligned_cols=88  Identities=15%  Similarity=0.056  Sum_probs=61.8

Q ss_pred             HhhhcCeEEEEEeCCCCCCCC--chhHhhc--cCCCCE--EEEEEcCCCCCh--hhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187           42 RLKISDLVIEVRDSRIPLSSA--HPGLQPQ--LSAKRR--VIALNKKDLANP--NILNKWVRHFDSCKQDYIAINAHSRS  113 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~--~~~l~~~--~~~kp~--IiVlNK~DL~~~--~~~~~~~~~~~~~g~~vi~iSa~~~~  113 (375)
                      +.++++.+|.|.|....-+-.  ...+.++  .....+  -+|.||+||...  ...++...|.+..|..++.+||+++.
T Consensus        74 YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~  153 (200)
T KOG0092|consen   74 YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGE  153 (200)
T ss_pred             eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEeccccc
Confidence            467999999999987643211  1122222  122223  447799999973  23455666766778889999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 017187          114 SVQKLLELVELKLKEV  129 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~  129 (375)
                      ++++|...|.+.++..
T Consensus       154 Nv~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  154 NVNEIFQAIAEKLPCS  169 (200)
T ss_pred             CHHHHHHHHHHhccCc
Confidence            9999999998888764

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=96.94  E-value=0.001  Score=66.99  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++|.+++|||||++.|+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~   22 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLH   22 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHH
Confidence            4799999999999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=96.91  E-value=0.0084  Score=56.78  Aligned_cols=61  Identities=18%  Similarity=0.141  Sum_probs=43.8

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      -..|||.. -...+...+..+|.+++|+|+..+.......+.+.  ..++|.++|+||+|+...
T Consensus        69 iDtPG~~~-f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          69 IDTPGYAD-FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA  131 (268)
T ss_pred             EECcCHHH-HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence            34699953 34556788999999999999987654432222222  357899999999998764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=96.88  E-value=0.0042  Score=64.68  Aligned_cols=61  Identities=20%  Similarity=0.115  Sum_probs=43.9

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      -.-|||.. ....+...+..+|.+|+|+|+..........+.+.  ..+.|+++++||+|+...
T Consensus        84 iDTPG~~d-f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         84 LDTPGHED-FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             EECCCchh-hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence            34799954 34556778999999999999986554332233332  357999999999998754

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.0037  Score=53.36  Aligned_cols=88  Identities=18%  Similarity=0.152  Sum_probs=58.9

Q ss_pred             HHhhhcCeEEEEEeCCC--CCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHH-----HHHhhCCCcEEEEe
Q 017187           41 HRLKISDLVIEVRDSRI--PLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWV-----RHFDSCKQDYIAIN  108 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~--p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~-----~~~~~~g~~vi~iS  108 (375)
                      ...+++|.||+|||..+  -.+....++...     +.+..+++++||.|........+..     +.++++-..++..|
T Consensus        81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS  160 (182)
T KOG0072|consen   81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS  160 (182)
T ss_pred             HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence            67899999999999753  222211222221     3456788889999986443322222     22333445788899


Q ss_pred             cCCccCHHHHHHHHHHHHhh
Q 017187          109 AHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l~~  128 (375)
                      |.++.|++...+|+.+-+++
T Consensus       161 A~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  161 AVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             cccccCCcHHHHHHHHHHhc
Confidence            99999999999999887654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=96.86  E-value=0.0025  Score=58.95  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|.++.|||||+++|+.
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~   22 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLA   22 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=96.83  E-value=0.0047  Score=57.10  Aligned_cols=85  Identities=15%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch--hHh----hccCCCCEEEEEEcCCCCChhh--------------HHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP--GLQ----PQLSAKRRVIALNKKDLANPNI--------------LNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~--~l~----~~~~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~~~  100 (375)
                      ..+..+|++|+|+|...+.+-.+.  .+.    ....+.|+++|.||+||.+...              .++-.++-++.
T Consensus        68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~  147 (222)
T cd04173          68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV  147 (222)
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc
Confidence            357899999999999876432221  111    1135689999999999964210              01111122234


Q ss_pred             CC-cEEEEecCCcc-CHHHHHHHHHHH
Q 017187          101 KQ-DYIAINAHSRS-SVQKLLELVELK  125 (375)
Q Consensus       101 g~-~vi~iSa~~~~-gvk~Ll~~L~~~  125 (375)
                      +. .++.+||+++. |+++++..+...
T Consensus       148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         148 GAVSYVECSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             CCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence            53 68889999887 599988876553

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK13351 elongation factor G; Reviewed

Probab=96.81  E-value=0.0071  Score=65.10  Aligned_cols=60  Identities=23%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      .-|||.. ....+...++.+|.+|+|+|+..+.......+.+.  ..++|+++|+||+|+...
T Consensus        79 DtPG~~d-f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         79 DTPGHID-FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             ECCCcHH-HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence            4699954 34556788999999999999987655433322222  357899999999998753

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=96.80  E-value=0.00096  Score=69.80  Aligned_cols=82  Identities=15%  Similarity=0.053  Sum_probs=58.6

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~  120 (375)
                      .+.|+|+-|+||...  .+|-.+ .++ ..++|.++++|++|.+.+...+--.+.+ +..|.++++++|+++.|++++++
T Consensus        80 ~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~  157 (653)
T COG0370          80 GKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKR  157 (653)
T ss_pred             CCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence            467999999999743  222221 222 4689999999999998664433222222 24689999999999999999999


Q ss_pred             HHHHHHh
Q 017187          121 LVELKLK  127 (375)
Q Consensus       121 ~L~~~l~  127 (375)
                      .+.+...
T Consensus       158 ~i~~~~~  164 (653)
T COG0370         158 AIIELAE  164 (653)
T ss_pred             HHHHhcc
Confidence            8876544

>cd04103 Centaurin_gamma Centaurin gamma

Probab=96.78  E-value=0.0032  Score=54.74  Aligned_cols=22  Identities=36%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~   22 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLT   22 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            3689999999999999998875

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR01393 lepA GTP-binding protein LepA

Probab=96.76  E-value=0.0026  Score=67.15  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh-hcccccccccccccccC------CCCCeeeeeEEEEE--c--cC--CcEEEEEcCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTKRATVG------PLPGVTQDIAGFKI--A--HR--PSIYVLDTPG  202 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~~~~v~------~~pg~T~~~~~~~i--~--~~--~~~~liDTPG  202 (375)
                      -+++++|.+|+|||||+++|+.. |.+...    .....+.      ...|.|.......+  .  ++  -.+.++||||
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~----~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG   79 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISER----EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   79 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccc----cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCC
Confidence            37999999999999999999862 222110    0011111      22477766543222  1  11  2478999999


Q ss_pred             CCCC
Q 017187          203 VLVP  206 (375)
Q Consensus       203 i~~~  206 (375)
                      ....
T Consensus        80 ~~dF   83 (595)
T TIGR01393        80 HVDF   83 (595)
T ss_pred             cHHH
Confidence            9753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=96.75  E-value=0.0045  Score=53.77  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=36.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE----EEEEccCC-cEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA----GFKIAHRP-SIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~----~~~i~~~~-~~~liDTPGi~~  205 (375)
                      ..++++++|-+|||||||+-....              .+..+...+|..+.    .+.+.+.. .+.++||.|-.-
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~--------------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr   72 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVS--------------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQER   72 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHh--------------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHh
Confidence            357899999999999999988775              11222222333332    23333322 478899999643

>TIGR00484 EF-G translation elongation factor EF-G

Probab=96.74  E-value=0.0039  Score=67.11  Aligned_cols=61  Identities=23%  Similarity=0.229  Sum_probs=45.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN   88 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~   88 (375)
                      .-|||... ...+...+..+|++|+|+|+..........+.+.  ..++|+++|+||+|+....
T Consensus        81 DTPG~~~~-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        81 DTPGHVDF-TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             ECCCCcch-hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence            46899643 3467788999999999999987665544344333  3578999999999998643

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=96.73  E-value=0.0027  Score=59.08  Aligned_cols=59  Identities=15%  Similarity=0.132  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE--ccCCcEEEEEcCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI--AHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i--~~~~~~~liDTPGi~~~  206 (375)
                      +|+++|.+++||||..+.++.-          -....+. .-|.|.++....+  .+.-.+.++|+||-...
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~----------~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~   61 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHK----------YSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDF   61 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS-------------GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCST
T ss_pred             CEEEEcCCCCChhhHHHHHHcC----------CCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCcccc
Confidence            5899999999999999999961          1111221 2245666554333  33336889999998654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=96.73  E-value=0.0031  Score=57.23  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      ++++++|..++|||||+.+|.++
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999763

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.0067  Score=54.37  Aligned_cols=90  Identities=17%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cC--CCCEEEEEEcCCCCChhhHH--HHHHHHhhCCCcEEEEec
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LS--AKRRVIALNKKDLANPNILN--KWVRHFDSCKQDYIAINA  109 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~--~kp~IiVlNK~DL~~~~~~~--~~~~~~~~~g~~vi~iSa  109 (375)
                      +-.++++++++|.|.|...-.+-++  .++.+.   ..  +.-+++|.||.||+++....  +-...-++.+..++.+|+
T Consensus        88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsa  167 (221)
T KOG0094|consen   88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSA  167 (221)
T ss_pred             hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecc
Confidence            3456889999999999875443322  344444   12  23456677999999875432  111222345667888999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.+.+++++...+...+++
T Consensus       168 k~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  168 KAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             cCCCCHHHHHHHHHHhccC
Confidence            9999999998887766654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=96.68  E-value=0.0036  Score=60.25  Aligned_cols=105  Identities=22%  Similarity=0.218  Sum_probs=73.6

Q ss_pred             eEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhcc-----CCCC----EEEEEEcCCCC
Q 017187           16 MGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQL-----SAKR----RVIALNKKDLA   85 (375)
Q Consensus        16 ~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~~-----~~kp----~IiVlNK~DL~   85 (375)
                      .++.+.-+=++.+|.|..++++.+.+-+..+|++++|+|...|....... +...+     ...|    .|=|-||+|..
T Consensus       228 vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  228 VLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             EEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence            34455556689999999999999999999999999999999886543211 11111     1112    45677888876


Q ss_pred             ChhhHHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        86 ~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.....        .....+.+||.+|.|++++++.+......
T Consensus       308 ~~~~e~--------E~n~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  308 EDEVEE--------EKNLDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccCcc--------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence            532211        11226789999999999999998877654

>TIGR00503 prfC peptide chain release factor 3

Probab=96.68  E-value=0.0071  Score=63.00  Aligned_cols=78  Identities=17%  Similarity=0.112  Sum_probs=50.6

Q ss_pred             HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEc
Q 017187            8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNK   81 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK   81 (375)
                      .||+.+...+.......    +-.-|||. .-...++..+..+|++|+|+|+..........+.+.  ..++|+++++||
T Consensus        63 ~rgisi~~~~~~~~~~~~~inliDTPG~~-df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNK  141 (527)
T TIGR00503        63 QRGISITTSVMQFPYRDCLVNLLDTPGHE-DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNK  141 (527)
T ss_pred             hcCCcEEEEEEEEeeCCeEEEEEECCChh-hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEC
Confidence            45554443333333322    33479993 444567788999999999999976543322233332  357899999999


Q ss_pred             CCCCC
Q 017187           82 KDLAN   86 (375)
Q Consensus        82 ~DL~~   86 (375)
                      +|+..
T Consensus       142 iD~~~  146 (527)
T TIGR00503       142 LDRDI  146 (527)
T ss_pred             ccccC
Confidence            99963

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG1084 Predicted GTPase [General function prediction only]

Probab=96.67  E-value=0.0026  Score=61.30  Aligned_cols=117  Identities=20%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             hcccccceEEeeCCCcccccchhHHHHH-------HHHHHHhh-hcCeEEEEEeCCCC----CCCCchhHhhc--cCCCC
Q 017187            9 KGLGLGEMGFTKGGGNINWFPGHMAAAT-------RAIKHRLK-ISDLVIEVRDSRIP----LSSAHPGLQPQ--LSAKR   74 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~~~~wfpgHm~k~~-------~~i~~~l~-~~DlVI~VvDar~p----~s~~~~~l~~~--~~~kp   74 (375)
                      |+|-+|+.-.....-.+-.=||=..+-+       ++.--+++ -.++|++++|++.-    +..+...+.+.  .-..|
T Consensus       203 K~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p  282 (346)
T COG1084         203 KGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP  282 (346)
T ss_pred             cceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC
Confidence            5665665554444444444566544322       22222333 35799999998742    11122233333  23489


Q ss_pred             EEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHH
Q 017187           75 RVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        75 ~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      +++|+||+|+.+.+..++...++...+. ..+.+++..+.+.+.+...+...
T Consensus       283 ~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         283 IVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             eEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence            9999999999988877776666644443 46677887787887777666554

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=96.66  E-value=0.01  Score=62.55  Aligned_cols=99  Identities=23%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             cccchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC------Chhh-------
Q 017187           26 NWFPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA------NPNI-------   89 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~------~~~~-------   89 (375)
                      -.-|||-.  +..++.+ ...||++|+|+|.-..+...-..-.++  ....|+|+.+||+|-+      +...       
T Consensus       545 IdtpghEs--FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk  622 (1064)
T KOG1144|consen  545 IDTPGHES--FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK  622 (1064)
T ss_pred             ecCCCchh--hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence            45678843  3334443 578999999999876544332222222  3568999999999954      1110       


Q ss_pred             ------------HHHHHHHHhhCCC---------------cEEEEecCCccCHHHHHHHHHHHH
Q 017187           90 ------------LNKWVRHFDSCKQ---------------DYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        90 ------------~~~~~~~~~~~g~---------------~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                                  +..++..|.+.|.               .++++||.+|.|+.+|+-+|.+..
T Consensus       623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence                        1112222222321               467899999999999998876554

>PLN00023 GTP-binding protein; Provisional

Probab=96.65  E-value=0.0046  Score=60.23  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||++.+.+
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~   43 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVK   43 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhc
Confidence            4568999999999999999999986

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.65  E-value=0.0066  Score=55.24  Aligned_cols=54  Identities=20%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             CCCEEEEEEcCCCCChh--hHHHHHHHHhh--CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           72 AKRRVIALNKKDLANPN--ILNKWVRHFDS--CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        72 ~kp~IiVlNK~DL~~~~--~~~~~~~~~~~--~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .++.++|+||+|+.+..  ...+..+.+++  ...+++.+|++++.|++++++++.++
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45779999999998642  23344444432  23679999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00101 ureG urease accessory protein UreG

Probab=96.65  E-value=0.0064  Score=55.21  Aligned_cols=76  Identities=20%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             cCeEEEEEeCCCCCCCCchhHhhccCCCCE--EEEEEcCCCCCh--hhH---HHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187           46 SDLVIEVRDSRIPLSSAHPGLQPQLSAKRR--VIALNKKDLANP--NIL---NKWVRHFDSCKQDYIAINAHSRSSVQKL  118 (375)
Q Consensus        46 ~DlVI~VvDar~p~s~~~~~l~~~~~~kp~--IiVlNK~DL~~~--~~~---~~~~~~~~~~g~~vi~iSa~~~~gvk~L  118 (375)
                      +|.+|.|+|+.......    .........  ++|+||+|+.+.  ...   .++.+.+ +.+.+++.+|++++.|++++
T Consensus       113 ~~~~i~vvD~~~~~~~~----~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~Sa~~g~gi~el  187 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIP----RKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKM-RGEKPFIFTNLKTKEGLDTV  187 (199)
T ss_pred             hCcEEEEEEcchhhhhh----hhhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHh-CCCCCEEEEECCCCCCHHHH
Confidence            46677888875422211    011112223  899999999852  222   2333333 34568999999999999999


Q ss_pred             HHHHHHHH
Q 017187          119 LELVELKL  126 (375)
Q Consensus       119 l~~L~~~l  126 (375)
                      .+++.+.+
T Consensus       188 ~~~i~~~~  195 (199)
T TIGR00101       188 IDWIEHYA  195 (199)
T ss_pred             HHHHHhhc
Confidence            99998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK10218 GTP-binding protein; Provisional

Probab=96.61  E-value=0.0051  Score=65.04  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh-hccccccccccc---ccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTK---RATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~---~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~  206 (375)
                      .+|+++|.+++|||||+++|+.. |...........   ........|+|.......+ ..+..+.++||||....
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df   81 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF   81 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence            47999999999999999999862 221100000000   0011123466665543222 22335889999998653

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.011  Score=52.89  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhHH--HHHHHHhhCCCc-
Q 017187           33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNILN--KWVRHFDSCKQD-  103 (375)
Q Consensus        33 ~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~~--~~~~~~~~~g~~-  103 (375)
                      .+-...+..+.++|+-||+|.|...--+-.+  ..+.+.    ..+.|.++|.||||+.+.....  ....+-.+.+.+ 
T Consensus        69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~  148 (205)
T KOG0084|consen   69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPI  148 (205)
T ss_pred             HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcc
Confidence            3444556678899999999999875322211  222222    3457999999999997653321  222333355666 


Q ss_pred             EEEEecCCccCHHHHHHHHHHHHhh
Q 017187          104 YIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       104 vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.+||++..++++.+..+...+..
T Consensus       149 f~ETSAK~~~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  149 FLETSAKDSTNVEDAFLTLAKELKQ  173 (205)
T ss_pred             eeecccCCccCHHHHHHHHHHHHHH
Confidence            7889999999999988877666554

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=96.59  E-value=0.0035  Score=56.91  Aligned_cols=63  Identities=25%  Similarity=0.129  Sum_probs=42.2

Q ss_pred             cccchhHHHHHHHHHHHhhhc-CeEEEEEeCCCCCCCCc---hhHhhc-------cCCCCEEEEEEcCCCCChhh
Q 017187           26 NWFPGHMAAATRAIKHRLKIS-DLVIEVRDSRIPLSSAH---PGLQPQ-------LSAKRRVIALNKKDLANPNI   89 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~-DlVI~VvDar~p~s~~~---~~l~~~-------~~~kp~IiVlNK~DL~~~~~   89 (375)
                      -.+|||.. ....+...++.+ +.||+|+|+........   ..+..+       ..+.|+++|.||+|+.....
T Consensus        53 ~D~pG~~~-~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          53 VDVPGHPK-LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             EECCCCHH-HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            35899964 345556778888 99999999976532111   112111       14789999999999875433

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=96.59  E-value=0.011  Score=51.57  Aligned_cols=101  Identities=18%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHH------H
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNK------W   93 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~------~   93 (375)
                      |=-|-.....+--+.+.+++|.+|+|+|..++..-+.  ..+.+.     ..+.|++++.||.|+.+.-..+.      .
T Consensus        65 wDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L  144 (185)
T KOG0073|consen   65 WDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDL  144 (185)
T ss_pred             EEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCH
Confidence            4444433333333467899999999999976543221  112222     46799999999999974322222      2


Q ss_pred             HHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           94 VRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+.++....+++.+|+.+++++.+=+.|+...+.
T Consensus       145 ~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~  178 (185)
T KOG0073|consen  145 EELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM  178 (185)
T ss_pred             HHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence            2222445568889999999888777777765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	375
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		1e-28
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		9e-23

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 20/225 (8%)
Query: 24  NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
            I WFPGHMA A R +  +LK+ D+V E+ D+RIP+SS +P ++  L  K R++ LNK D
Sbjct: 2   TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84  LANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXXXXXXXXXXXISR------EP-TL 136
            A+  +  +W  HF++     ++IN+ +                    R      +P  +
Sbjct: 62  KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
             +++G+PNVGKS LIN +            K   A  G  PG+T      K+     + 
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           +LDTPG+L P   D   GL+LA++G+IKDS++  + +A + L  L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 27/218 (12%)
Query: 25  INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
           ++W+PGH+  A R IK  L++ + V+EVRD+R P +++  G+    S K  +I LNK D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV--DFSRKETIILLNKVDI 58
Query: 85  ANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVVGVP 144
           A+     KWV  F   KQ    I  H                   +S +    V++VGVP
Sbjct: 59  ADEKTTKKWVEFFK--KQGKRVITTHKGEP--------RKVLLKKLSFDRLARVLIVGVP 108
Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
           N GKS +IN +            K KRA +VG  PG+T+ I  F + +   + +LDTPG+
Sbjct: 109 NTGKSTIINKL------------KGKRASSVGAQPGITKGIQWFSLEN--GVKILDTPGI 154
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
           L  +I   +   KL L GS+    + ++RI +    + 
Sbjct: 155 LYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIF 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	375
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	2e-83
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	9e-73
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	4e-29
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	8e-27
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	3e-09
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	4e-08
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-07
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	3e-04
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	4e-04
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	6e-04
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	8e-04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	9e-04

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score =  254 bits (651), Expect = 2e-83
 Identities = 86/350 (24%), Positives = 145/350 (41%), Gaps = 80/350 (22%)

Query: 24  NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
            I WFPGHMA A R +  +LK+ D+V E+ D+RIP+SS +P ++  L  K R++ LNK D
Sbjct: 2   TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61

Query: 84  LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
            A+  +  +W  HF++     ++IN+ +   + +++   +  L+E   R          +
Sbjct: 62  KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121

Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
             +++G+PNVGKS LIN +            K   A  G  PG+T      K+     + 
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVG--KELE 168

Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
           +LDTPG+L P   D   GL+LA++G+IKDS++  + +A + L  L       +   L  R
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH----YPERLKER 224

Query: 257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDE 316
                        Y L +                 + +  G +R   +S    +      
Sbjct: 225 -------------YGLDE--------IPEDIAELFDAI--GEKRGCLMSGGLIN------ 255

Query: 317 NDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
                          +               ++  +   RT K G    +
Sbjct: 256 -------------YDKT--------------TEVIIRDIRTEKFGRLSFE 278

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  226 bits (578), Expect = 9e-73
 Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 25/220 (11%)

Query: 25  INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
           ++W+PGH+  A R IK  L++ + V+EVRD+R P +++  G+    S K  +I LNK D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV--DFSRKETIILLNKVDI 58

Query: 85  ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVP 144
           A+     KWV  F    +  I  +      V          L + +S +    V++VGVP
Sbjct: 59  ADEKTTKKWVEFFKKQGKRVITTHKGEPRKV----------LLKKLSFDRLARVLIVGVP 108

Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204
           N GKS +IN +              + ++VG  PG+T+ I  F +     + +LDTPG+L
Sbjct: 109 NTGKSTIINKLK-----------GKRASSVGAQPGITKGIQWFSL--ENGVKILDTPGIL 155

Query: 205 VPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
             +I   +   KL L GS+    + ++RI +    +    
Sbjct: 156 YKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARS 195

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score =  115 bits (288), Expect = 4e-29
 Identities = 58/276 (21%), Positives = 99/276 (35%), Gaps = 32/276 (11%)

Query: 37  RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH 96
           R +    K   LV+++ D      S  PGL   +   + ++  NK DL   ++ +  V+H
Sbjct: 61  RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKH 120

Query: 97  F--DSCKQ------DYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGK 148
           +   S KQ      D   I+A     + +L + +E              V VVG  NVGK
Sbjct: 121 WMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKD-------VYVVGCTNVGK 173

Query: 149 SALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL---- 204
           S  IN      + +    E     T    PG T D+    +       + DTPG++    
Sbjct: 174 STFIN-----RMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE--SSLYDTPGIINHHQ 226

Query: 205 VPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLH-----WRHLNNRTEV 259
           +      ++   +  +  IK  V           + L               H +NR  +
Sbjct: 227 MAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286

Query: 260 SQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLV 295
            +++ E   E   K+       PP   ++  + +LV
Sbjct: 287 HRTKLEKADEL-YKNHAGDLLSPPTPEELENMPELV 321

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score =  108 bits (271), Expect = 8e-27
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 24  NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
           ++             +    +   LV+ + D      S  PGL    +    ++  NK D
Sbjct: 53  DVPLDDDDF---LSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKAD 109

Query: 84  LA----NPNILNKWVRHFDSCKQ------DYIAINAHSRSSVQKLLELVELKLKEVISRE 133
           L         L +W+R     ++      D   ++A     + K++E +    +      
Sbjct: 110 LLPRSVKYPKLLRWMRRM--AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGG---- 163

Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
               V VVG  NVGKS  IN I +          K    T    PG T D+    +    
Sbjct: 164 ---DVYVVGCTNVGKSTFINRIIE------EATGKGNVITTSYFPGTTLDMIEIPLESGA 214

Query: 194 SIYVLDTPGVLVP 206
           ++Y  DTPG++  
Sbjct: 215 TLY--DTPGIINH 225

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 15/116 (12%)

Query: 99  SCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQI 158
           S  ++++       ++ +KL+E    KLK+      T+LV  +G   VGKS+ +NS+   
Sbjct: 3   SLVREWVGFQQFPAATQEKLIEFFG-KLKQKDMNSMTVLV--LGKGGVGKSSTVNSL--- 56

Query: 159 ALSRFPVQEKTKRATVGPLPGVTQD-IAGFKIAHRPSIYVLDTPGVLVPSIPDIET 213
            +         +   V P        +   +     +I ++DTPG++     + + 
Sbjct: 57  -IGE-------QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQA 104

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 102 QDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALS 161
           +++  IN  + ++  KLLEL+    +E      +L ++V+G   VGKS+ +NSI    + 
Sbjct: 9   REWSGINTFAPATQTKLLELLGNLKQE---DVNSLTILVMGKGGVGKSSTVNSI----IG 61

Query: 162 RFPVQEKTKRATVGPLPGVTQD-IAGFKIAHRPSIYVLDTPGVLVPSIPD 210
                   +  ++ P        +   +     ++ ++DTPG++     +
Sbjct: 62  E-------RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 18/126 (14%)

Query: 97  FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR---------EPTLLVMVVGVPNVG 147
           F         I+    + ++  +      ++   S             L V V G    G
Sbjct: 24  FKKFNTGRKIISQEILNLIELRMR--AGNIQLTNSAISDALKEIDSSVLNVAVTGETGSG 81

Query: 148 KSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207
           KS+ IN      L     +E  + A    +  VT +   +K  + P++   D PG+   +
Sbjct: 82  KSSFIN-----TLRGIGNEE--EGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN 134

Query: 208 IPDIET 213
            P    
Sbjct: 135 FPPDTY 140

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 15/65 (23%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
           ++  G  NVGKS LI  +              K+   G  PGVT+ I   +     +  +
Sbjct: 4   IIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKIIEIEWK---NHKI 48

Query: 198 LDTPG 202
           +D PG
Sbjct: 49  IDMPG 53

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 51/320 (15%), Positives = 96/320 (30%), Gaps = 99/320 (30%)

Query: 79  LNKKDLANPNIL----NKWVRHFDSCKQ--------------DYIAINAHSRSSVQKLLE 120
             +      +IL    + +V +FD CK               D+I ++  + S   +L  
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 121 LVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180
            +  K +E++ +       V  V  +    L++ I         +  +        L   
Sbjct: 70  TLLSKQEEMVQK------FVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYND 122

Query: 181 TQDIAGFKIAHRPSIYVL--------DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEER 232
            Q  A + ++       L            VL+        G+     GS K + V  + 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-------DGVL----GSGK-TWVALDV 170

Query: 233 IAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIE 292
              Y   V       + W +L N                                    E
Sbjct: 171 CLSY--KVQCKMDFKIFWLNLKNCNS--------------------------------PE 196

Query: 293 DLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFL 352
            ++  +Q+ L+    + D N    +D  S I+ +   +Q  L+        RL+ SK + 
Sbjct: 197 TVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQAELR--------RLLKSKPY- 243

Query: 353 TLFRTGKLGPFILDDVPDAN 372
                  L   +L +V +A 
Sbjct: 244 ---ENCLL---VLLNVQNAK 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 56/389 (14%), Positives = 106/389 (27%), Gaps = 151/389 (38%)

Query: 31  HMAAATRAIKHRLK----------ISDL-VIEVRDS-RIPLSSA---HPGLQPQ-LSAKR 74
           HM   T   +++ K          + +    +V+D  +  LS     H  +    +S   
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 75  RVI-ALNKKDLANPNILNKWVRHFDSCKQDY------IA-------------INAHSR-- 112
           R+   L  K      ++ K+V   +  + +Y      I              I    R  
Sbjct: 66  RLFWTLLSK---QEEMVQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 113 SSVQKL-------LELVELKLKEVISR-EPTLLVMVVGVPNVGKSALINSIHQIALSRFP 164
           +  Q         L+   LKL++ +    P   V++ GV   GK+ +           + 
Sbjct: 121 NDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALD----VCLSYK 175

Query: 165 VQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIK 224
           VQ K                  FK      I+ L+                         
Sbjct: 176 VQCK----------------MDFK------IFWLN------------------------- 188

Query: 225 DSVVGEERIAQYLLAVLNTRGTPLHWR---HLNNRTEVSQSETENKHEYNLKDLRPKRRK 281
              +      + +L +L      L ++   +  +R++ S +     H    +  R  + K
Sbjct: 189 ---LKNCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 282 P-PNA-------SDVTYIED-------LVT----------GVQRALHVSLSEFDGNVEDE 316
           P  N         +             L+T                H+SL      +  +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 317 NDLESLIEQQFEVLQRALKI-----PHKA 340
              E        +L + L       P + 
Sbjct: 302 ---EVK-----SLLLKYLDCRPQDLPREV 322

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 56/383 (14%), Positives = 111/383 (28%), Gaps = 136/383 (35%)

Query: 46  SDLVIEV-RDSRIPLSSAHPGLQPQLSAKRRVIALN----KKDLANPNILNKWVRHFDSC 100
           + + ++V    ++           Q     ++  LN            +L K +   D  
Sbjct: 164 TWVALDVCLSYKV-----------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-- 210

Query: 101 KQDYIAINAHSRSSVQKLLELVELKLKEVISREP---TLLVMVVGVPNVGKSALINSIHQ 157
             ++ + + HS S+++  +  ++ +L+ ++  +P    LLV+     NV  +   N+   
Sbjct: 211 -PNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVL----LNVQNAKAWNA--- 261

Query: 158 IALSRFPVQEK---TKRATVGPLPGVTQDIAGFKIAHRPSIYVLD--TP----------- 201
                F +  K   T R        VT  ++     H    +     TP           
Sbjct: 262 -----FNLSCKILLTTRFK-----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 202 GVLVPSIP-DIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVS 260
                 +P ++ T     LS      ++ E             R     W +        
Sbjct: 312 DCRPQDLPREVLTTNPRRLS------IIAES-----------IRDGLATWDNW------- 347

Query: 261 QSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNV------- 313
                 KH  N   L           + + +  L     R +   LS F  +        
Sbjct: 348 ------KH-VNCDKLT-------TIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 314 ------EDENDLE---------SLIEQQFEV-------LQRALKIP-------HKASEAR 344
                   ++D+          SL+E+Q +        +   LK+        H+     
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----S 448

Query: 345 LMVSKKFLTLFRTGKLGPFILDD 367
           ++        F +  L P  LD 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQ 471

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 9/70 (12%), Positives = 28/70 (40%)

Query: 66  LQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK 125
           +  +      ++ +NK D+A+   + +  +       + I I+A   + +  + E +   
Sbjct: 274 VHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKT 333

Query: 126 LKEVISREPT 135
           L+ +  +   
Sbjct: 334 LRPLAEKVAR 343

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 103 DYIAINAHSRSSVQKLLELVELKLKEVISREP---TLLVMVVGVPNVGKSALINSIHQIA 159
           +   I+      +  LL+ V    K +   +     +   ++G PNVGKS+L+N++    
Sbjct: 140 EPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAM---- 195

Query: 160 LSRFPVQEKTKRATVGPLPGVTQD 183
                + E  +R  V  + G T+D
Sbjct: 196 -----LGE--ERVIVSNVAGTTRD 212

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 131 SREPTLLVMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188
            R   L +++VG    GKSA  NSI   ++  S    +  TK+         +      +
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKR-----SSSWKETE 79

Query: 189 IAHRPSIYVLDTPGVLVPSIPDIET 213
                 + V+DTPG+    +P+ ET
Sbjct: 80  ------LVVVDTPGIFDTEVPNAET 98

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 18/100 (18%)

Query: 110 HSRSSVQKLLELVELKLKEVISREPT---LLVMVVGVPNVGKSALINSIHQIALSRFPVQ 166
           HS   V +   ++E   +  +          ++V G  NVGKS+ +N++         V 
Sbjct: 6   HSSGLVPRGSHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNAL---------VG 56

Query: 167 EKTKRATVGPLPGVTQD-IAGFKIAH--RPSIYVLDTPGV 203
           +    + V    G T D +      H   P   V DTPG+
Sbjct: 57  Q--NVSIVSDYAGTTTDPVYKSMELHPIGPVTLV-DTPGL 93

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 40.2 bits (95), Expect = 9e-04
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 17/127 (13%)

Query: 37  RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH 96
           R ++  ++ +D+V+ V D+  PL      +  ++  KR ++ +NK D+    I  + +++
Sbjct: 316 RTLQE-IEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV-EKINEEEIKN 373

Query: 97  FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALI-NSI 155
                +  + I+A     ++KL E              ++      +   G  +LI N  
Sbjct: 374 KLGTDRHMVKISALKGEGLEKLEE--------------SIYRETQEIFERGSDSLITNLR 419

Query: 156 HQIALSR 162
            +  L  
Sbjct: 420 QKQLLEN 426

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	100.0
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	100.0
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.9
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.8
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.77
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.37
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.07
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.88
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.85
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.84
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.84
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.83
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.82
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.81
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.81
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.8
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.79
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.78
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.78
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.77
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.75
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.74
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.73
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.72
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.72
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.71
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.7
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.67
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.67
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.67
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.67
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.62
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.61
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.61
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.61
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.61
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.6
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.6
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.58
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.58
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.55
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.55
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.55
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.54
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.53
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.53
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.52
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.51
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.5
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.5
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.49
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.49
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.48
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.47
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.47
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.45
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.45
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.44
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.44
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.44
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.43
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.43
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.41
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.41
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.41
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.41
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.41
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.41
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.41
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.41
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.4
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.4
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.4
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.39
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.39
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.38
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.38
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.38
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.37
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.37
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.37
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.37
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.37
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.36
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.36
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.36
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.36
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.36
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.36
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.35
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.35
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.35
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.35
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.35
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.35
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.34
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.34
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.33
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.33
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.32
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.32
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.32
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.31
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.31
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.31
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.31
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.31
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.3
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.3
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.3
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.3
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.3
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.29
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.29
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.29
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.29
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.29
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.29
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.28
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.28
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.27
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.27
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.27
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.26
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.26
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.26
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.25
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.25
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.25
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.25
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.24
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.24
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.24
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.24
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.23
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.23
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.23
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.23
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.23
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.23
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.23
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.23
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.23
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.23
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.22
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.22
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.22
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.22
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.22
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.22
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.21
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.21
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.21
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.21
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.2
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.2
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.2
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.2
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.2
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.19
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.19
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.19
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.19
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.19
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.19
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.19
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.19
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.19
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.18
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.18
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.18
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.18
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.18
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.18
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.17
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.17
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.17
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.17
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.17
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.17
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.17
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.16
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.16
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.16
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.16
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.16
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.16
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.15
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.15
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.15
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.15
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.15
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.15
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.15
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.15
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.15
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.14
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.14
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.14
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.14
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.14
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.13
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.12
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.12
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.12
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.11
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.11
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.11
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.11
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.11
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.1
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.1
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.1
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.1
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.1
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.1
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.09
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.08
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.08
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.08
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.08
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.08
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.07
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.07
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.07
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.07
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.07
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.07
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.07
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.06
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.06
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.06
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.05
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.31
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.05
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.04
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.04
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.03
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.03
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.03
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.02
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.02
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.01
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.01
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.01
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.01
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.0
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.0
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.99
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.99
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.98
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.98
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.98
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.97
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.96
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.96
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.94
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.94
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.94
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.93
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.93
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.92
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.92
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.91
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.88
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.87
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.85
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.83
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.83
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.82
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.81
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.81
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.78
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.77
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.76
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.73
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.71
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.7
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.69
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.87
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.69
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.68
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.68
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.68
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.68
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.66
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.66
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.66
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.66
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.66
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.65
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.65
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.64
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.63
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.61
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.6
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.6
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.59
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.58
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.56
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.55
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.52
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.51
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.51
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.5
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.5
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.5
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.49
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.47
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.47
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.45
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.43
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.42
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.41
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.4
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.37
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.36
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.35
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.35
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.35
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.35
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.35
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.32
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.32
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.3
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.28
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.27
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.25
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.22
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.21
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.2
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.18
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.17
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.15
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.13
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.13
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.12
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.12
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.11
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.03
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.02
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.95
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.88
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.82
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.81
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	96.78
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	96.76
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.76
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	96.75
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	96.74
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	96.73
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.69
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.69
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.62
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.58
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	96.49
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.49
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.49
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.48
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.38
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.32
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.3
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.25
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.15
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.13
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.94
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.88
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.73
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.7
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.67
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.6
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	95.52
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	95.52
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.52
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	95.49
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.46
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.42
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.4
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	95.24
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.13
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.03
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.01
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.92
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.9
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.89
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	94.87
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.87
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.83
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.73
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	94.73
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.66
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.65
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.6
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.56
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.52
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	94.47
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.47
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.43
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.43
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.42
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.41
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.35
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.33
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.26
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.15
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.14
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.12
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.06
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.04
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.03
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.01
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.99
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.99
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	93.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.86
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.78
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.78
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.77
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.77
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.76
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.76
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.75
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.71
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.69
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	93.64
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.64
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.63
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.62
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.61
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.6
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.55
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.55
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.54
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.52
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.5
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.45
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.44
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.44
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.44
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.44
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.44
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.43
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.43
1g6h_A	257	High-affinity branched-chain amino acid transport	93.43
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.42
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.4
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.39
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.38
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.36
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.32
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.31
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.3
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.3
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.28
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.26
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.22
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.2
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.19

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-52  Score=397.68  Aligned_cols=271  Identities=30%  Similarity=0.492  Sum_probs=216.3

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcE
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDY  104 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~v  104 (375)
                      |+||||||.++.+++++.++++|+|++|+|||+|.++.++.+.++..++|+++|+||+||++++..+.|.+++++.+.++
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~   82 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS   82 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence            89999999999999999999999999999999999999989999888999999999999999877889999997678889


Q ss_pred             EEEecCCccCHHHHHHHHHHHHhhhh-------ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187          105 IAINAHSRSSVQKLLELVELKLKEVI-------SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL  177 (375)
Q Consensus       105 i~iSa~~~~gvk~Ll~~L~~~l~~~~-------~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~  177 (375)
                      +++|+.++.|+++|++.+.+.+.+..       .....++++++|.||||||||||+|.+           .+.+.+++.
T Consensus        83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~-----------~~~~~~~~~  151 (282)
T 1puj_A           83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK-----------KNIAKTGDR  151 (282)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHT-----------SCCC-----
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhc-----------CceeecCCC
Confidence            99999999999999998887765421       134678999999999999999999997           456789999


Q ss_pred             CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccc
Q 017187          178 PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT  257 (375)
Q Consensus       178 pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~  257 (375)
                      ||+|++.+.+.+.  .+++++||||+.++...+.+.+.++|++|++++..++.++++.|++++++...+     .....+
T Consensus       152 ~g~T~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~-----~~l~~~  224 (282)
T 1puj_A          152 PGITTSQQWVKVG--KELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP-----ERLKER  224 (282)
T ss_dssp             -------CCEEET--TTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCH-----HHHHHH
T ss_pred             CCeeeeeEEEEeC--CCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhCh-----HHHHHH
Confidence            9999999876664  469999999999999999888999999999999999999999999999886432     111112


Q ss_pred             ccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCC
Q 017187          258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIP  337 (375)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  337 (375)
                      |++                      |                           ....+..+|++.+|+++|++.|+| .|
T Consensus       225 y~~----------------------~---------------------------~~~~~~~~~l~~~a~~~g~~~kgg-~~  254 (282)
T 1puj_A          225 YGL----------------------D---------------------------EIPEDIAELFDAIGEKRGCLMSGG-LI  254 (282)
T ss_dssp             TTC----------------------S---------------------------SCCSSHHHHHHHHHHHHTCBCSTT-CB
T ss_pred             cCC----------------------C---------------------------CCCCCHHHHHHHHHHHhCCcccCC-cc
Confidence            222                      0                           001356789999999999999975 57


Q ss_pred             CcchHHHHHHHHHHHHHhhCCCCCCeecccC
Q 017187          338 HKASEARLMVSKKFLTLFRTGKLGPFILDDV  368 (375)
Q Consensus       338 ~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~  368 (375)
                      |     +++||+.||+|||+||||+||||.+
T Consensus       255 d-----~~~aa~~~l~d~~~Gklg~~~l~~~  280 (282)
T 1puj_A          255 N-----YDKTTEVIIRDIRTEKFGRLSFEQP  280 (282)
T ss_dssp             C-----HHHHHHHHHHHHHTTTTCSCCSCCC
T ss_pred             c-----HHHHHHHHHHHHHcCCCCceECCCC
Confidence            6     8999999999999999999999974

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=100.00  E-value=1e-46  Score=355.17  Aligned_cols=247  Identities=28%  Similarity=0.429  Sum_probs=185.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEE
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYI  105 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi  105 (375)
                      +||||||.++++++++.++++|+||+|+|||+|.++.++.+. +. ++|+++|+||+||++++..+.|.+++++.+.++ 
T Consensus         2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-   78 (262)
T 3cnl_A            2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-   78 (262)
T ss_dssp             -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred             CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence            799999999999999999999999999999999999988877 66 899999999999999877889999997778888 


Q ss_pred             EEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187          106 AINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA  185 (375)
Q Consensus       106 ~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~  185 (375)
                      ++|++++.|+++|++.+...+         .+++++|.||||||||||+|.+           ...+.+++.||+|+..+
T Consensus        79 ~iSa~~~~gi~~L~~~l~~~~---------~~v~~vG~~~vGKSslin~l~~-----------~~~~~~~~~~g~T~~~~  138 (262)
T 3cnl_A           79 ITTHKGEPRKVLLKKLSFDRL---------ARVLIVGVPNTGKSTIINKLKG-----------KRASSVGAQPGITKGIQ  138 (262)
T ss_dssp             EECCTTSCHHHHHHHHCCCTT---------CEEEEEESTTSSHHHHHHHHHT-----------TCC----------CCSC
T ss_pred             EEECCCCcCHHHHHHHHHHhh---------hheEEeCCCCCCHHHHHHHHhc-----------ccccccCCCCCCccceE
Confidence            999999999999877764321         5899999999999999999997           34567889999999988


Q ss_pred             EEEEccCCcEEEEEcCCCCCCCC-CChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcccccccccc
Q 017187          186 GFKIAHRPSIYVLDTPGVLVPSI-PDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSET  264 (375)
Q Consensus       186 ~~~i~~~~~~~liDTPGi~~~~~-~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~  264 (375)
                      .+.+.  ..++++||||+.++.+ .+.+.+         ++..++.+.++.+++++++..     |+.....+|.+    
T Consensus       139 ~~~~~--~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~-----~~~~l~~~y~i----  198 (262)
T 3cnl_A          139 WFSLE--NGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER-----AFEIFARSIGI----  198 (262)
T ss_dssp             EEECT--TSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH-----HHHHHHHHHTC----
T ss_pred             EEEeC--CCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh-----CHHHHHHHcCc----
Confidence            76554  4699999999999988 665544         334445566666666666542     21111111111    


Q ss_pred             cccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCCCcchHHH
Q 017187          265 ENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEAR  344 (375)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  344 (375)
                                                                   .  ..+ .++++.+++++|++.|+| .||     +
T Consensus       199 ---------------------------------------------~--~~d-~~~l~~ia~~~g~~~kgg-~~d-----~  224 (262)
T 3cnl_A          199 ---------------------------------------------E--SSF-SEFFEDFARKRGLLKKGG-VPD-----I  224 (262)
T ss_dssp             ---------------------------------------------C--CCH-HHHHHHHHHHTTCBCGGG-CBC-----H
T ss_pred             ---------------------------------------------C--CCc-HHHHHHHHHHhCCccCCC-ccc-----H
Confidence                                                         1  112 589999999999999875 565     8


Q ss_pred             HHHHHHHHHHhhCCCCCCeecccCC
Q 017187          345 LMVSKKFLTLFRTGKLGPFILDDVP  369 (375)
Q Consensus       345 ~~aa~~~l~~~r~G~lg~~~ld~~~  369 (375)
                      ++||+.||++||+|+||+|+||+++
T Consensus       225 ~~aa~~~l~d~~~g~l~~~~l~~~~  249 (262)
T 3cnl_A          225 ERALMLFFTEVAQGKAGRVSFERPE  249 (262)
T ss_dssp             HHHHHHHHHHHHTTTTCSCCSCCTT
T ss_pred             HHHHHHHHHHHHcCCCCceECCCCc
Confidence            9999999999999999999999864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.90  E-value=4.1e-23  Score=203.18  Aligned_cols=157  Identities=27%  Similarity=0.301  Sum_probs=124.4

Q ss_pred             HHHHHH-HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHHH-HhhCCC---cEEE
Q 017187           36 TRAIKH-RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVRH-FDSCKQ---DYIA  106 (375)
Q Consensus        36 ~~~i~~-~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~-~~~~g~---~vi~  106 (375)
                      .+++.+ ..+.+|+|++|+|+++|.++..+.+.++..++|+++|+||+||++.+    ...+|... +++.|.   ++++
T Consensus        61 f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~  140 (369)
T 3ec1_A           61 FLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL  140 (369)
T ss_dssp             HHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred             HHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence            344444 44788999999999999888888888887789999999999998753    34566543 445565   6899


Q ss_pred             EecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187          107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG  186 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~  186 (375)
                      +||+++.|+++|++.+.+...       ..+++++|.||||||||+|+|++...      +....+.+++.||||++...
T Consensus       141 iSA~~g~gi~~L~~~I~~~~~-------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~~gtT~~~~~  207 (369)
T 3ec1_A          141 VSAAKGIGMAKVMEAINRYRE-------GGDVYVVGCTNVGKSTFINRIIEEAT------GKGNVITTSYFPGTTLDMIE  207 (369)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHT-------TSCEEEECCTTSSHHHHHHHHHHHHH------HTTCCCEEEECTTSSCEEEE
T ss_pred             EECCCCCCHHHHHHHHHhhcc-------cCcEEEEcCCCCchHHHHHHHHhhcc------CCccceeecCCCCeEEeeEE
Confidence            999999999999999887653       34799999999999999999997211      11246788999999999887


Q ss_pred             EEEccCCcEEEEEcCCCCCCC
Q 017187          187 FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       187 ~~i~~~~~~~liDTPGi~~~~  207 (375)
                      +.+..  ++.++||||+..+.
T Consensus       208 ~~~~~--~~~liDtPG~~~~~  226 (369)
T 3ec1_A          208 IPLES--GATLYDTPGIINHH  226 (369)
T ss_dssp             EECST--TCEEEECCSCCCCS
T ss_pred             EEeCC--CeEEEeCCCcCcHH
Confidence            66553  48999999998764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.88  E-value=1.4e-22  Score=199.31  Aligned_cols=157  Identities=25%  Similarity=0.309  Sum_probs=118.0

Q ss_pred             HHHHHH-HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHHH-HhhCCC---cEEE
Q 017187           36 TRAIKH-RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVRH-FDSCKQ---DYIA  106 (375)
Q Consensus        36 ~~~i~~-~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~-~~~~g~---~vi~  106 (375)
                      .+++.+ ..+.+|+|++|+|+++|..+.++.+.++..++|+++|+||+||++..    ...+|... +++.+.   +++.
T Consensus        59 f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~  138 (368)
T 3h2y_A           59 FLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFL  138 (368)
T ss_dssp             HHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred             HHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence            344444 44566799999999998777777787777789999999999998754    34566544 345566   7899


Q ss_pred             EecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhccccccccc-ccccccCCCCCeeeeeE
Q 017187          107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEK-TKRATVGPLPGVTQDIA  185 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k-~~~~~v~~~pg~T~~~~  185 (375)
                      +||+++.|+++|++.+.+...       ..+++++|.||||||||+|+|++...      ++ ...+.+++.||||++..
T Consensus       139 iSA~~g~gi~~L~~~l~~~~~-------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~~~gtT~~~~  205 (368)
T 3h2y_A          139 ISAAKGQGIAELADAIEYYRG-------GKDVYVVGCTNVGKSTFINRMIKEFS------DETENVITTSHFPGTTLDLI  205 (368)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT-------TSCEEEEEBTTSSHHHHHHHHHHHHT------TSCSSCCEEECCC----CEE
T ss_pred             EeCCCCcCHHHHHhhhhhhcc-------cceEEEecCCCCChhHHHHHHHhhhc------cccccceecCCCCCeecceE
Confidence            999999999999999877542       35799999999999999999997310      00 23567899999999988


Q ss_pred             EEEEccCCcEEEEEcCCCCCCC
Q 017187          186 GFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       186 ~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      .+.+..  +++++||||+..+.
T Consensus       206 ~~~~~~--~~~liDtPG~~~~~  225 (368)
T 3h2y_A          206 DIPLDE--ESSLYDTPGIINHH  225 (368)
T ss_dssp             EEESSS--SCEEEECCCBCCTT
T ss_pred             EEEecC--CeEEEeCCCcCcHH
Confidence            776554  48999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.81  E-value=1.1e-19  Score=182.53  Aligned_cols=157  Identities=26%  Similarity=0.316  Sum_probs=112.9

Q ss_pred             HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCc
Q 017187           36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSR  112 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~  112 (375)
                      .++....++++|+||+|+|++.+.+..+..+.++  ..++|+++|+||+|+........+.+++ +.+. +++++||+++
T Consensus        72 ~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           72 KEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHN  150 (439)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCC
Confidence            3456678999999999999998877666566665  2479999999999985431111123444 4555 6899999999


Q ss_pred             cCHHHHHHHHHHHHhhhh-c------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187          113 SSVQKLLELVELKLKEVI-S------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA  185 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~~-~------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~  185 (375)
                      .|+.+|++.+.+.+++.. .      ....++++++|.||||||||+|+|.+           ...+.+++.||+|++..
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g-----------~~~~~v~~~~gtT~d~~  219 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILN-----------KERALVSPIPGTTRDPV  219 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECCCC------C
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhC-----------CcccccCCCCCCcCCce
Confidence            999999999988876532 1      12458999999999999999999997           34567899999999875


Q ss_pred             E--EEEccCCcEEEEEcCCCCC
Q 017187          186 G--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       186 ~--~~i~~~~~~~liDTPGi~~  205 (375)
                      .  +.+. +..+.++||||+..
T Consensus       220 ~~~i~~~-g~~~~l~Dt~G~~~  240 (439)
T 1mky_A          220 DDEVFID-GRKYVFVDTAGLRR  240 (439)
T ss_dssp             CEEEEET-TEEEEESSCSCC--
T ss_pred             EEEEEEC-CEEEEEEECCCCcc
Confidence            3  3333 33688999999854

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.81  E-value=6.7e-21  Score=182.51  Aligned_cols=143  Identities=18%  Similarity=0.218  Sum_probs=107.5

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhcc-----CCCCEEEEEEcCCCCChhh----HHHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQL-----SAKRRVIALNKKDLANPNI----LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~-----~~kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..++++|+|++|+|++.|..+.+ .+.+++     .++|+++|+||+||+++..    ++.|.++|+..|++++++|+.+
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~  160 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD  160 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence            36899999999999999988876 677763     6899999999999998744    6789999977789999999999


Q ss_pred             ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC-------CCeeeee
Q 017187          112 RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL-------PGVTQDI  184 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~-------pg~T~~~  184 (375)
                      +.|+++|++..           .+-.++++|.||||||||+|+|.+.-           ...++..       .++|+..
T Consensus       161 ~~g~~~L~~~~-----------~G~~~~lvG~sG~GKSTLln~L~g~~-----------~~~~G~I~~~~~~G~~tt~~~  218 (307)
T 1t9h_A          161 QDSLADIIPHF-----------QDKTTVFAGQSGVGKSSLLNAISPEL-----------GLRTNEISEHLGRGKHTTRHV  218 (307)
T ss_dssp             HTTCTTTGGGG-----------TTSEEEEEESHHHHHHHHHHHHCC------------------------------CCCC
T ss_pred             CCCHHHHHhhc-----------CCCEEEEECCCCCCHHHHHHHhcccc-----------cccccceeeecCCCcccccHH
Confidence            88887765543           23479999999999999999998721           1122222       2456655


Q ss_pred             EEEEEccCCcEEEEEcCCCCCCCCC
Q 017187          185 AGFKIAHRPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       185 ~~~~i~~~~~~~liDTPGi~~~~~~  209 (375)
                      +.++..   ..+++||||+..+.+.
T Consensus       219 ~~~~~~---~g~v~dtpg~~~~~l~  240 (307)
T 1t9h_A          219 ELIHTS---GGLVADTPGFSSLEFT  240 (307)
T ss_dssp             CEEEET---TEEEESSCSCSSCCCT
T ss_pred             HHhhcC---CEEEecCCCccccccc
Confidence            544443   4799999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.80  E-value=5.2e-20  Score=184.78  Aligned_cols=160  Identities=21%  Similarity=0.305  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecC
Q 017187           34 AATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAH  110 (375)
Q Consensus        34 k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~  110 (375)
                      +..++....++.+|++|+|+|++.+.+..+..+.++  ..++|+++|+||+|+.+...  ...+++ +.+. +++++||+
T Consensus        71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~  147 (436)
T 2hjg_A           71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGT  147 (436)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTT
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCc
Confidence            334556678999999999999998877666666554  35789999999999975421  111223 3444 68999999


Q ss_pred             CccCHHHHHHHHHHHHhhhh---ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE
Q 017187          111 SRSSVQKLLELVELKLKEVI---SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF  187 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~~~---~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~  187 (375)
                      ++.|+.+|++++.+.+++..   .....++++++|.||||||||+|+|.+           .....+++.||||++....
T Consensus       148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~-----------~~~~~~~~~~gtT~d~~~~  216 (436)
T 2hjg_A          148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRDAVDT  216 (436)
T ss_dssp             TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEEC---------CCE
T ss_pred             CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhC-----------CCceeecCCCCceeeeeEE
Confidence            99999999999988876421   123568999999999999999999997           3446688899999987532


Q ss_pred             EEc-cCCcEEEEEcCCCCCCC
Q 017187          188 KIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       188 ~i~-~~~~~~liDTPGi~~~~  207 (375)
                      .+. .+..+.++||||+....
T Consensus       217 ~~~~~~~~~~l~DT~G~~~~~  237 (436)
T 2hjg_A          217 SFTYNQQEFVIVDTAGMRKKG  237 (436)
T ss_dssp             EEEETTEEEEETTHHHHTCBT
T ss_pred             EEEECCeEEEEEECCCcCcCc
Confidence            222 23358999999997543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.77  E-value=1.5e-18  Score=169.28  Aligned_cols=146  Identities=21%  Similarity=0.283  Sum_probs=105.2

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc-----CCCCEEEEEEcCCCCChhh---HHHHHHHHhhCCCcEEEEecC
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL-----SAKRRVIALNKKDLANPNI---LNKWVRHFDSCKQDYIAINAH  110 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~-----~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~  110 (375)
                      .+..++++|+|++| ||+.|..+.+ .+.+++     .++|+++|+||+||++++.   .+.|..+|+..|++++++|+.
T Consensus       124 ~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          124 VKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence            34457999999965 7788877765 566662     5789999999999998765   567999998889999999999


Q ss_pred             CccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC---CC----eeee
Q 017187          111 SRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL---PG----VTQD  183 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~---pg----~T~~  183 (375)
                      ++.|+++|...+           .+-.++++|.||||||||+|.|.+.-.          ...++..   +|    +|+.
T Consensus       202 ~~~gl~~L~~~~-----------~G~~~~lvG~sG~GKSTLln~L~g~~~----------~~~~G~I~~~~G~g~~tt~~  260 (358)
T 2rcn_A          202 TQDGLKPLEEAL-----------TGRISIFAGQSGVGKSSLLNALLGLQN----------EILTNDVSNVSGLGQHTTTA  260 (358)
T ss_dssp             TTBTHHHHHHHH-----------TTSEEEEECCTTSSHHHHHHHHHCCSS----------CCCCC-------------CC
T ss_pred             CCcCHHHHHHhc-----------CCCEEEEECCCCccHHHHHHHHhcccc----------ccccCCccccCCCCccceEE
Confidence            999999877643           233689999999999999999997311          0122211   12    4444


Q ss_pred             eEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187          184 IAGFKIAHRPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       184 ~~~~~i~~~~~~~liDTPGi~~~~~~  209 (375)
                      .....+..  +..++||||+....+.
T Consensus       261 ~~i~~v~q--~~~l~dtpgv~e~~l~  284 (358)
T 2rcn_A          261 ARLYHFPH--GGDVIDSPGVREFGLW  284 (358)
T ss_dssp             CEEEECTT--SCEEEECHHHHTCCCC
T ss_pred             EEEEEECC--CCEecCcccHHHhhhc
Confidence            44343443  3578999999765443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.76  E-value=2.6e-18  Score=164.41  Aligned_cols=148  Identities=21%  Similarity=0.301  Sum_probs=104.0

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNI---LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..++++|++++|+|++.|..+.+ .+.++     ..++|+++|+||+||.++..   .+.|.+++++.+++++++||+++
T Consensus        75 ~~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g  153 (302)
T 2yv5_A           75 PKVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG  153 (302)
T ss_dssp             TEEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            36899999999999998864433 34444     26799999999999997652   56777877777889999999999


Q ss_pred             cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEcc
Q 017187          113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAH  191 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~  191 (375)
                      .|+++|.+.+.           +..++++|.+|||||||+|+|. .-....     +.... .+.-..+|+....+... 
T Consensus       154 ~gi~~L~~~l~-----------G~i~~l~G~sG~GKSTLln~l~-~~~~~~-----G~i~~~~~~G~~~t~~~~~~~~~-  215 (302)
T 2yv5_A          154 EGIDELVDYLE-----------GFICILAGPSGVGKSSILSRLT-GEELRT-----QEVSEKTERGRHTTTGVRLIPFG-  215 (302)
T ss_dssp             TTHHHHHHHTT-----------TCEEEEECSTTSSHHHHHHHHH-SCCCCC-----SCC---------CCCCEEEEEET-
T ss_pred             CCHHHHHhhcc-----------CcEEEEECCCCCCHHHHHHHHH-HhhCcc-----cccccccCCCCCceeeEEEEEcC-
Confidence            99999877653           3368999999999999999998 422110     01110 00111245554444442 


Q ss_pred             CCcEEEEEcCCCCCCCC
Q 017187          192 RPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       192 ~~~~~liDTPGi~~~~~  208 (375)
                       ...+++||||+..+.+
T Consensus       216 -~~g~v~d~pg~~~~~l  231 (302)
T 2yv5_A          216 -KGSFVGDTPGFSKVEA  231 (302)
T ss_dssp             -TTEEEESSCCCSSCCG
T ss_pred             -CCcEEEECcCcCcCcc
Confidence             2479999999986543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.75  E-value=1.8e-18  Score=174.47  Aligned_cols=159  Identities=23%  Similarity=0.324  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEec
Q 017187           33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINA  109 (375)
Q Consensus        33 ~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa  109 (375)
                      .+..+++...++.+|+||+|+|++.+++..+..+.++  ..++|+++|+||+|+.+..  ..+.+++ ..+. .++++||
T Consensus        90 ~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iSA  166 (456)
T 4dcu_A           90 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPISG  166 (456)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSG-GGSSSSEEECCT
T ss_pred             HHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEeec
Confidence            3444566678899999999999998887766666665  3579999999999987532  2222333 3333 5789999


Q ss_pred             CCccCHHHHHHHHHHHHhhh---hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187          110 HSRSSVQKLLELVELKLKEV---ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG  186 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~~---~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~  186 (375)
                      +++.|+.+|++.+...++..   .......+++++|.||||||||+|+|.+           .....+++.||+|++...
T Consensus       167 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~-----------~~~~~~~~~~gtt~~~~~  235 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRDAVD  235 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECC------CTTS
T ss_pred             ccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhC-----------CCccccCCCCCeEEEEEE
Confidence            99999999999998776542   1234578999999999999999999997           345778899999998753


Q ss_pred             --EEEccCCcEEEEEcCCCCCC
Q 017187          187 --FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       187 --~~i~~~~~~~liDTPGi~~~  206 (375)
                        +... +..+.++||||+...
T Consensus       236 ~~~~~~-~~~~~l~DT~G~~~~  256 (456)
T 4dcu_A          236 TSFTYN-QQEFVIVDTAGMRKK  256 (456)
T ss_dssp             EEEEET-TEEEEETTGGGTTTB
T ss_pred             EEEEEC-CceEEEEECCCCCcC
Confidence              3333 236899999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=3e-17  Score=156.97  Aligned_cols=149  Identities=21%  Similarity=0.250  Sum_probs=100.7

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNI---LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..++++|++|+|+|++.|.++.+ .+.++     ..++|+++|+||+||.+...   .++|.+.+... ..++.+||+++
T Consensus        80 ~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg  157 (301)
T 1u0l_A           80 PHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTG  157 (301)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred             cccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCC
Confidence            35889999999999998865432 33333     25789999999999987644   44566666433 67899999999


Q ss_pred             cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEcc
Q 017187          113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAH  191 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~  191 (375)
                      .|+++++..+.           +-.++++|.||||||||+|+|.+.-....     +... ..+.-..+|+..+.+++. 
T Consensus       158 ~gv~~lf~~l~-----------geiv~l~G~sG~GKSTll~~l~g~~~~~~-----G~i~~~~~~g~~~t~~~~~~~~~-  220 (301)
T 1u0l_A          158 MGIEELKEYLK-----------GKISTMAGLSGVGKSSLLNAINPGLKLRV-----SEVSEKLQRGRHTTTTAQLLKFD-  220 (301)
T ss_dssp             TTHHHHHHHHS-----------SSEEEEECSTTSSHHHHHHHHSTTCCCC------------------CCCSCCEEECT-
T ss_pred             cCHHHHHHHhc-----------CCeEEEECCCCCcHHHHHHHhcccccccc-----cceecccCCCCCceeeeEEEEcC-
Confidence            99999887653           23689999999999999999997311110     0000 000112245544444332 


Q ss_pred             CCcEEEEEcCCCCCCCCC
Q 017187          192 RPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       192 ~~~~~liDTPGi~~~~~~  209 (375)
                       ...+++||||+..+.+.
T Consensus       221 -~~g~v~q~p~~~~~~~~  237 (301)
T 1u0l_A          221 -FGGYVVDTPGFANLEIN  237 (301)
T ss_dssp             -TSCEEESSCSSTTCCCC
T ss_pred             -CCCEEEECcCCCccCCC
Confidence             24689999999877653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.37  E-value=1.4e-14  Score=141.58  Aligned_cols=153  Identities=20%  Similarity=0.159  Sum_probs=101.8

Q ss_pred             CeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhh-C-CCcEEEEecCCccCHHHHHH
Q 017187           47 DLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDS-C-KQDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        47 DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~-g~~vi~iSa~~~~gvk~Ll~  120 (375)
                      |.+-.+++++.++.+.++.+.++.    ..++.++++||+|++++...+.|.+|++. . +.....+++..+.+...+..
T Consensus        59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (357)
T 2e87_A           59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS  138 (357)
T ss_dssp             HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            344456677777777788887774    77888899999999998888889998864 2 33222233333333444433


Q ss_pred             HHHHHHhhh-------------hc-cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187          121 LVELKLKEV-------------IS-REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG  186 (375)
Q Consensus       121 ~L~~~l~~~-------------~~-~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~  186 (375)
                      .+.....+.             .. .....+++++|.||||||||+|+|.+            ....++..|++|++...
T Consensus       139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~------------~~~~~~~~~~~t~~~~~  206 (357)
T 2e87_A          139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTT------------AKPEIASYPFTTRGINV  206 (357)
T ss_dssp             HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCS------------SCCEEECCTTCSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCeeeceeE
Confidence            322211110             01 24568999999999999999999996            22456778889988764


Q ss_pred             EEEc-cCCcEEEEEcCCCCCCCCCCh
Q 017187          187 FKIA-HRPSIYVLDTPGVLVPSIPDI  211 (375)
Q Consensus       187 ~~i~-~~~~~~liDTPGi~~~~~~~~  211 (375)
                      ..+. .+..+.++||||+..+.....
T Consensus       207 ~~~~~~~~~~~l~Dt~G~~~~~~~~~  232 (357)
T 2e87_A          207 GQFEDGYFRYQIIDTPGLLDRPISER  232 (357)
T ss_dssp             EEEEETTEEEEEEECTTTSSSCSTTS
T ss_pred             EEEEecCceEEEEeCCCccccchhhh
Confidence            3332 223588999999987654433

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.9e-10  Score=112.74  Aligned_cols=59  Identities=25%  Similarity=0.353  Sum_probs=48.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~  206 (375)
                      ..+|++||+||||||||+|+|.+            ..+.+++.|+||++...  +.+ .+.++.++||||+...
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~------------~~~~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~  132 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTG------------TESEAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDG  132 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHS------------BCCCGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhC------------CCCcccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCC
Confidence            45899999999999999999997            34778999999999873  333 3346999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.90  E-value=1.6e-09  Score=103.22  Aligned_cols=62  Identities=37%  Similarity=0.552  Sum_probs=48.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ...|+++|.||||||||+|+|.+           .+.+.+++.|+||++... +....+.++.++||||+..+.
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g-----------~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~   69 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLG-----------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM   69 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----------CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence            45799999999999999999997           355677888999988653 222233468899999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.85  E-value=3e-09  Score=101.55  Aligned_cols=64  Identities=36%  Similarity=0.459  Sum_probs=51.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-cc-CCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AH-RPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~-~~~~~liDTPGi~~~~  207 (375)
                      .....|+++|.||||||||+|+|.+           .+.+.+++.|++|++...... .. +.++.++||||+..+.
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g-----------~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~   73 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLG-----------TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK   73 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhC-----------CCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence            4567899999999999999999997           455678899999998764222 22 4468999999998765

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.84  E-value=4.8e-09  Score=97.59  Aligned_cols=60  Identities=30%  Similarity=0.462  Sum_probs=46.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~  208 (375)
                      +|+++|.||||||||+|+|.+            ....++..||+|.+.....+. .+..+.++||||+.....
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g------------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~   63 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTN------------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA   63 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT------------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHC------------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence            699999999999999999997            336688899999876643332 233689999999987653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.84  E-value=3.8e-09  Score=99.14  Aligned_cols=61  Identities=28%  Similarity=0.467  Sum_probs=48.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                      .++|+++|.||||||||+|+|.+            ....++..||+|.+.....+. .+..+.++||||+....
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g------------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~   64 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTG------------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT   64 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT------------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence            57899999999999999999997            235788899999887643232 23468999999998755

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.83  E-value=1e-08  Score=95.75  Aligned_cols=64  Identities=23%  Similarity=0.384  Sum_probs=49.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~~~  207 (375)
                      ...++|+++|.+|||||||+|+|++           .....+++.+|+|.....+.+.. +..+.++||||+....
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~  101 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIG-----------ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG  101 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence            4578999999999999999999997           34456777888888766544433 2358999999997654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.82  E-value=6.6e-09  Score=90.70  Aligned_cols=117  Identities=17%  Similarity=0.023  Sum_probs=69.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh-HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI-LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~   98 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+     ..+.|+++|+||+|+.+... .+...++.+
T Consensus        70 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  148 (195)
T 1x3s_A           70 DTAGQER-FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR  148 (195)
T ss_dssp             EECSSGG-GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH
T ss_pred             eCCCchh-hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH
Confidence            4566532 11223466889999999999976533211  111222     14678999999999965432 233444444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSA  150 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSs  150 (375)
                      ..+..++.+||+++.|++++++++.+.+.+.....      --+.+|+||||
T Consensus       149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~------~~~~~n~gkSs  194 (195)
T 1x3s_A          149 KHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW------ESENQNSGPSS  194 (195)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGGT------CC---------
T ss_pred             HcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhhh------cccccCCCCCC
Confidence            56778899999999999999999988776421111      12446999997

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.82  E-value=6e-09  Score=90.28  Aligned_cols=61  Identities=30%  Similarity=0.505  Sum_probs=46.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~  206 (375)
                      .+.+|+++|.||||||||+|+|.+           .....+++.||+|++...  +.+.. ..+.++||||+...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~   65 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG-----------REAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREA   65 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC-----------CCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccc
Confidence            467899999999999999999997           233456788999987643  33432 35889999999753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.81  E-value=1e-08  Score=96.29  Aligned_cols=62  Identities=29%  Similarity=0.440  Sum_probs=49.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~  208 (375)
                      .++|+++|.||||||||+|+|.+            ....++..||+|.+.....+..+..+.++||||......
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g------------~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~   64 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG------------HNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP   64 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC------------CCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCC
Confidence            46899999999999999999996            235688899999876544443344699999999986543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.81  E-value=2.9e-09  Score=106.55  Aligned_cols=58  Identities=38%  Similarity=0.488  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      +|++||.||||||||+|.|.+           .+.+.+++.||+|++.....+ ..+..+.++||||+..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~   61 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVK-----------KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD   61 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence            689999999999999999997           345678999999998763222 2234689999999875

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.81  E-value=2.1e-09  Score=108.67  Aligned_cols=63  Identities=30%  Similarity=0.498  Sum_probs=30.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ..+++|+++|.||||||||+|+|.+           ...+.+++.||||++...  +.+. +..+.++||||+..+.
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~vs~~~gtT~d~~~~~i~~~-g~~l~liDT~G~~~~~  295 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLG-----------QERAIVSHMPGTTRDYIEECFIHD-KTMFRLTDTAGLREAG  295 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC-----------------------------CEEEEET-TEEEEEEC--------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEEC-CeEEEEEECCCCCcch
Confidence            3468899999999999999999997           345778899999999863  3333 2368999999997643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.80  E-value=8.5e-09  Score=94.23  Aligned_cols=67  Identities=27%  Similarity=0.374  Sum_probs=41.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCC--CeeeeeEEEEEc-cCCcEEEEEcCCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLP--GVTQDIAGFKIA-HRPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~p--g~T~~~~~~~i~-~~~~~~liDTPGi~~~~~~  209 (375)
                      ...++|+++|.+|||||||+|+|.+.           . ...+..|  ++|+......+. .+..+.++||||+......
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~-----------~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~   94 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR-----------K-VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP   94 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS-----------C-CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC-----------C-cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence            46789999999999999999999971           1 2233333  677776643322 2336899999999887655


Q ss_pred             Ch
Q 017187          210 DI  211 (375)
Q Consensus       210 ~~  211 (375)
                      ..
T Consensus        95 ~~   96 (239)
T 3lxx_A           95 NA   96 (239)
T ss_dssp             CH
T ss_pred             HH
Confidence            44

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.79  E-value=3.1e-09  Score=107.66  Aligned_cols=61  Identities=38%  Similarity=0.576  Sum_probs=49.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCC-CC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVL-VP  206 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~-~~  206 (375)
                      .+++|+++|.||||||||+|+|.+           ...+.+++.||||++...  +.+. +..+.++||||+. .+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~-----------~~~a~vs~~~gTT~d~~~~~i~~~-g~~~~l~DTaG~~~~~  305 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLN-----------EDRAIVTDIPGTTRDVISEEIVIR-GILFRIVDTAGVRSET  305 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHH-----------HTBCCCCCSSCCSSCSCCEEEEET-TEEEEEEESSCCCSSC
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHC-----------CCCCccCCCCCeeeeeEEEEEecC-CeEEEEEECCCccccc
Confidence            358999999999999999999997           345678999999998863  4343 3468999999998 54

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.78  E-value=1.1e-08  Score=89.44  Aligned_cols=65  Identities=28%  Similarity=0.373  Sum_probs=42.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIP  209 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~  209 (375)
                      ....+|+++|.+|||||||+|+|.+.          .....+++.||+|+....+.+.  ..+.++||||+..+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~   85 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR----------KNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVS   85 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------CCEEEEEET--TTEEEEECCCBCCCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC----------CCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccC
Confidence            45689999999999999999999971          1235677888999988766554  36999999998765443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.78  E-value=9.3e-09  Score=95.70  Aligned_cols=66  Identities=29%  Similarity=0.429  Sum_probs=50.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCCCCCCCh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLVPSIPDI  211 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~~~~~~~  211 (375)
                      ..++|+++|.||||||||+|+|.+            ....++..||+|.+.....+.. +..+.++||||.........
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g------------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   70 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG------------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI   70 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH
Confidence            457899999999999999999996            2244778899998876433332 33689999999987654333

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.78  E-value=7.9e-09  Score=92.63  Aligned_cols=68  Identities=28%  Similarity=0.392  Sum_probs=52.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc--cCCcEEEEEcCCCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA--HRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~--~~~~~~liDTPGi~~~~~~~  210 (375)
                      ....+|+|+|.+|||||||+|+|.+.          ...+.++..||+|+....+.+.  .+..+.++||||+..+....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   96 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ----------KRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG   96 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC----------SSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC----------CcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh
Confidence            45679999999999999999999971          1246788899999988765554  23469999999987765443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.77  E-value=2.1e-08  Score=93.28  Aligned_cols=65  Identities=25%  Similarity=0.342  Sum_probs=49.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~  208 (375)
                      ...++|+++|.+|||||||+|+|++           ...+.+++.+++|.......+. .+..+.++||||+.....
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~   99 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIG-----------EQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY   99 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHT-----------SCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence            4679999999999999999999997           3445677788888876643332 233689999999976543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.75  E-value=2.3e-08  Score=87.06  Aligned_cols=62  Identities=34%  Similarity=0.440  Sum_probs=49.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ....+|+++|.+|||||||+|+|.+           .....+++.+|+|+........  ..+.++||||+....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~   82 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFN-----------RKIAFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAK   82 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHT-----------SCCSCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHc-----------CccccccCCCCCccCeEEEEEC--CcEEEEECCCCcccc
Confidence            3457899999999999999999997           2346677888999887754443  359999999986543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.74  E-value=8.1e-09  Score=106.68  Aligned_cols=63  Identities=25%  Similarity=0.325  Sum_probs=42.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE----EE--E--EccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA----GF--K--IAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~----~~--~--i~~~~~~~liDTPGi~  204 (375)
                      ....+|+|+|.||||||||+|+|.+.           ..+ + +.+|+|++..    .+  .  ...+..++|+||||+.
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~-----------~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGK-----------KKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC-----------SSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCC-----------CCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            45678999999999999999999972           111 1 3444443332    11  1  1234569999999999


Q ss_pred             CCCC
Q 017187          205 VPSI  208 (375)
Q Consensus       205 ~~~~  208 (375)
                      .+..
T Consensus       103 ~~~~  106 (592)
T 1f5n_A          103 DVEK  106 (592)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            7643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.73  E-value=2.3e-08  Score=86.85  Aligned_cols=60  Identities=30%  Similarity=0.409  Sum_probs=47.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~  210 (375)
                      ++|+++|.+|||||||+|+|.+            ....++..||+|.....+.+.   .+.++||||+......+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~   61 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKIIEIEWK---NHKIIDMPGFGFMMGLP   61 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS------------CCCSSSSSTTCTTSCEEEEET---TEEEEECCCBSCCTTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------------cCCccCCCCCccceeEEEecC---CEEEEECCCccccccCC
Confidence            4799999999999999999996            235566778999887766554   69999999987654443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.72  E-value=5e-09  Score=105.58  Aligned_cols=62  Identities=42%  Similarity=0.631  Sum_probs=44.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccCCcEEEEEcCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~~~~~liDTPGi~~~  206 (375)
                      ..+++|+++|.||||||||+|+|.+           ...+.+++.||+|++..  .+.+. +.++.++||||+..+
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~~-g~~v~liDT~G~~~~  285 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQ-----------SDRAIVTDLPGTTRDVVESQLVVG-GIPVQVLDTAGIRET  285 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHH-----------HHBSCCSCCTTCCHHHHHHEEEET-TEEEEECC-------
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhC-----------CCcccccCCCCeeEEEEEEEEEEC-CEEEEEEECCccccc
Confidence            3568899999999999999999997           34567888999999885  33343 346899999999764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.72  E-value=8.7e-09  Score=98.03  Aligned_cols=59  Identities=27%  Similarity=0.347  Sum_probs=45.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~  204 (375)
                      ...|+++|.||||||||+|+|.+           .+.+.+++.|++|++... +......++.++||||+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g-----------~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~   67 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLG-----------QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT-----------CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC-----------CCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence            45799999999999999999997           345567888999987543 222333468899999986

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.71  E-value=2.6e-08  Score=92.99  Aligned_cols=65  Identities=32%  Similarity=0.496  Sum_probs=49.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCCCCh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSIPDI  211 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~~~~  211 (375)
                      .++|+++|.||||||||+|+|.+            ....++..||+|.+.....+. .+..+.++||||+........
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   68 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTG------------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI   68 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHT------------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH
Confidence            46899999999999999999997            223677889999887643332 233589999999987554443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.70  E-value=3.4e-08  Score=84.56  Aligned_cols=60  Identities=32%  Similarity=0.572  Sum_probs=40.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ..+++++|.||||||||+|.|.+            ....++..||+|.+...  +.+. +..+.++||||.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~~   64 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLT   64 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC------------CSSSCC-----CCCCCEEEEEET-TEEEEEEECCCCSCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC------------CCeeccCCCCcceeeeEEEEEEC-CcEEEEEECCCcccCC
Confidence            46899999999999999999996            22345677888876542  3332 3368899999987643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.67  E-value=1.8e-08  Score=94.21  Aligned_cols=70  Identities=26%  Similarity=0.239  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC---cEEEEEcCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP---SIYVLDTPGVLVP  206 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~---~~~liDTPGi~~~  206 (375)
                      ...++|+++|.||||||||+|+|++.......    .........|+++.+.....+....   .+.++||||+...
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~   78 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPE----YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA   78 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccC----CCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence            45689999999999999999999873211100    0000000133344444333343322   5899999999653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.67  E-value=2.6e-08  Score=92.06  Aligned_cols=67  Identities=22%  Similarity=0.166  Sum_probs=46.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-eeeeeEEEEE-ccCCcEEEEEcCCCCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-VTQDIAGFKI-AHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-~T~~~~~~~i-~~~~~~~liDTPGi~~~~~~~  210 (375)
                      ...++|+|+|.||||||||+|+|.+           .....++..|+ +|+......+ ..+..+.++||||+..+....
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~-----------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~   88 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR-----------KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC   88 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT-----------SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH
Confidence            4568999999999999999999997           22233444444 6776653222 233468999999998765444

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.67  E-value=9e-09  Score=102.89  Aligned_cols=59  Identities=34%  Similarity=0.462  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV  205 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~  205 (375)
                      .+|+++|.||||||||+|+|.+           .+.+.+++.||+|++.....+. .+..+.++||||+..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~   63 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAG-----------ERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI   63 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEE-----------EECC-----------CEEEECTTCSSCCEEEC------
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence            4799999999999999999997           3456789999999987654433 234689999999974

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.67  E-value=8.2e-08  Score=85.90  Aligned_cols=86  Identities=19%  Similarity=0.081  Sum_probs=62.5

Q ss_pred             hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhh-------CCCcEEEEec
Q 017187           43 LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDS-------CKQDYIAINA  109 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~-------~g~~vi~iSa  109 (375)
                      ...+|+||+|+|++.+.+.....+.+.  ..++|+++|+||+|+.+......    +.+.+..       .+.+++.+||
T Consensus       113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA  192 (223)
T 4dhe_A          113 RPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSA  192 (223)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBT
T ss_pred             CcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeec
Confidence            334899999999988766544444343  35789999999999987654332    2233322       3457899999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +++.|+++++++|.+.++.
T Consensus       193 ~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          193 LKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             TTTBSHHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHhcCc
Confidence            9999999999999888765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.62  E-value=6.1e-08  Score=95.84  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=80.0

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC-ch-hHhh--ccCCCCEEEEEEcCCCCChhhHHHHHH----H
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA-HP-GLQP--QLSAKRRVIALNKKDLANPNILNKWVR----H   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~-~~-~l~~--~~~~kp~IiVlNK~DL~~~~~~~~~~~----~   96 (375)
                      +-..||| .+..+.+...+..+|++|+|+|++.+.+.. .. .+..  ....+|+++|+||+|+++.+......+    +
T Consensus        79 iiDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           79 FIDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             EEECCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            3457998 456677788899999999999999865221 11 1111  134568999999999998764433332    2


Q ss_pred             HhhC---CCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEEc
Q 017187           97 FDSC---KQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVVG  142 (375)
Q Consensus        97 ~~~~---g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vvG  142 (375)
                      +...   +.+++++||+++.|+++|++.|.+.++.. .....+.+..+..
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~  207 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIR  207 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEE
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEE
Confidence            3221   45799999999999999999998876543 2223455665554

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.61  E-value=1e-07  Score=82.78  Aligned_cols=62  Identities=29%  Similarity=0.502  Sum_probs=45.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                      ...+++++|.+|||||||+|+|.+            ....++..||+|.+.....+. .+..+.++||||.....
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~   68 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT   68 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC------------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence            457899999999999999999996            223456678888766532222 23358899999987653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.61  E-value=3.1e-08  Score=102.69  Aligned_cols=132  Identities=17%  Similarity=0.145  Sum_probs=93.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChh---hHHHHHHHHhh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPN---ILNKWVRHFDS   99 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~~   99 (375)
                      +-.-|||. .....+...+..+|.+|+|+|+..+.+..... +... ..+.|+++|+||+|+.+..   ..+++.+.+.-
T Consensus        75 liDTPGh~-dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~  153 (599)
T 3cb4_D           75 FIDTPGHV-DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI  153 (599)
T ss_dssp             EEECCCCG-GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC
T ss_pred             EEECCCch-HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCC
Confidence            44589994 44456778899999999999998765543222 1111 4578999999999997643   22334444321


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEEcC---CCCChHHHHHHHHh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVVGV---PNVGKSALINSIHQ  157 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vvG~---pnvGKSsliN~L~~  157 (375)
                      ...+++++||+++.|+++|++++.+.++.. .....+++.+++..   |++|+.++++-+.+
T Consensus       154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG  215 (599)
T 3cb4_D          154 DATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNG  215 (599)
T ss_dssp             CCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred             CcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeC
Confidence            122589999999999999999998888754 22345677777775   89999888776654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.61  E-value=8.7e-08  Score=89.97  Aligned_cols=41  Identities=17%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhhhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          117 KLLELVELKLKEVI--SREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       117 ~Ll~~L~~~l~~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++.+.+.+...+  ......+|+|+|.||||||||+|+|.+
T Consensus         6 ~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g   48 (299)
T 2aka_B            6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHC
Confidence            44445555444321  224567999999999999999999997

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.61  E-value=4.2e-08  Score=83.84  Aligned_cols=62  Identities=18%  Similarity=0.185  Sum_probs=39.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~  205 (375)
                      ...++|+++|.||||||||+|+|.+           .....+.+.+|+|.....+.+.... .+.++||||...
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   64 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAG-----------KQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK   64 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC-----------C-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhc-----------CCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence            3567999999999999999999996           2334445567777655444444321 478999999754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.60  E-value=2.7e-08  Score=96.97  Aligned_cols=59  Identities=24%  Similarity=0.399  Sum_probs=40.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCcEE
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPSIY  196 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~~~  196 (375)
                      .+++++||.||||||||+|+|.+            ..+.+++.|++|.+...  +.+..                ...+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~------------~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~   69 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK------------AGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTME   69 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH------------TC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEE
Confidence            35799999999999999999997            22667888998887652  22221                12589


Q ss_pred             EEEcCCCCC
Q 017187          197 VLDTPGVLV  205 (375)
Q Consensus       197 liDTPGi~~  205 (375)
                      ++||||+..
T Consensus        70 lvDtpGl~~   78 (363)
T 1jal_A           70 FVDIAGLVA   78 (363)
T ss_dssp             EEECCSCCT
T ss_pred             EEECCCCcc
Confidence            999999975

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.60  E-value=1.1e-07  Score=90.20  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhhhhc-cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          117 KLLELVELKLKEVIS-REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       117 ~Ll~~L~~~l~~~~~-~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++.+++.+...+. .....+|+|+|.||||||||+|+|.+
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g   46 (315)
T 1jwy_B            5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVG   46 (315)
T ss_dssp             HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHC
Confidence            445555555543322 24457899999999999999999997

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.58  E-value=2.4e-08  Score=98.78  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--Ec--------------------c--
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IA--------------------H--  191 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~--------------------~--  191 (375)
                      ++|+++|.||||||||+|+|.+           .+ +.+++.|++|++.....  +.                    .  
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~-----------~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~   68 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATL-----------VD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGL   68 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTE
T ss_pred             CEEEEECCCCCCHHHHHHHHHC-----------CC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCc
Confidence            4799999999999999999997           23 67888999998765211  10                    1  


Q ss_pred             -CCcEEEEEcCCCCC
Q 017187          192 -RPSIYVLDTPGVLV  205 (375)
Q Consensus       192 -~~~~~liDTPGi~~  205 (375)
                       .-++.++||||+..
T Consensus        69 ~~~~i~lvDtpG~~~   83 (397)
T 1wxq_A           69 ALIPVKMVDVAGLVP   83 (397)
T ss_dssp             EEEEEEEEECC----
T ss_pred             ceEEEEEEECCCccc
Confidence             12488999999964

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.58  E-value=5.3e-08  Score=82.03  Aligned_cols=60  Identities=37%  Similarity=0.577  Sum_probs=37.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP  206 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~  206 (375)
                      .+++++|.+|||||||+|+|.+           .....++..|++|++.....+. .+..+.++||||....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   62 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLK-----------KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG   62 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH-----------CCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence            4799999999999999999997           2334466778888877643332 2236889999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.55  E-value=7.5e-08  Score=87.06  Aligned_cols=62  Identities=24%  Similarity=0.381  Sum_probs=41.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP  206 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~  206 (375)
                      ....+|+|+|.+|||||||+|+|.+           .. ..+++.+++|++....... ....+.++||||....
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~   89 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR-----------AN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR   89 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT-----------TC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC-----------CC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence            4568999999999999999999996           12 2355678888877643222 2235889999999653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.55  E-value=1.1e-07  Score=80.77  Aligned_cols=61  Identities=20%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ..++|+++|.+|||||||+|+|.+.          .-.....+.+|++.....+.+... ..+.++||||..
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   66 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED----------SFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE   66 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS----------CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC----------CCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence            4689999999999999999999971          112344566777766555444322 247899999974

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.55  E-value=4.5e-08  Score=86.79  Aligned_cols=62  Identities=29%  Similarity=0.387  Sum_probs=38.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~  206 (375)
                      ..+.+++++|.+|||||||+|+|.+.          .....+++.+|+|+....+.+..  ++.++||||+...
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~----------~~~~~~~~~~G~~~~~~~~~~~~--~~~l~Dt~G~~~~   85 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ----------KSLARTSKTPGRTQLINLFEVAD--GKRLVDLPGYGYA   85 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-----------------------CCEEEEEEET--TEEEEECCCCC--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC----------CccccccCCCccceeeEEEEecC--CEEEEECcCCccc
Confidence            56789999999999999999999861          11355677889998765554543  6899999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.54  E-value=4.8e-08  Score=82.84  Aligned_cols=59  Identities=25%  Similarity=0.268  Sum_probs=33.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      .++|+++|.||||||||+|+|.+           .....+.+.+|+|.... +.+... -.+.++||||...
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~   61 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG-----------VEDGPEAEAAGHTYDRS-IVVDGEEASLMVYDIWEQDG   61 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC-----------C----------CEEEEE-EEETTEEEEEEEEECC----
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC-----------ccccCCCCccccceEEE-EEECCEEEEEEEEECCCCcc
Confidence            46899999999999999999986           23446667788887543 223222 2477899999754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.53  E-value=3.5e-07  Score=79.79  Aligned_cols=88  Identities=8%  Similarity=0.099  Sum_probs=63.0

Q ss_pred             HHHhhhc---CeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHHHh-hCCCcEEEEec
Q 017187           40 KHRLKIS---DLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRHFD-SCKQDYIAINA  109 (375)
Q Consensus        40 ~~~l~~~---DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~-~~g~~vi~iSa  109 (375)
                      ...+..+   |++++|+|+..+.+..+..+.++  ..+.|+++|+||+|+.+.....    .+.+.+. ..+.+++.+||
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  176 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSS  176 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEc
Confidence            3444555   99999999988766544333344  3578999999999998765443    2333332 23457899999


Q ss_pred             CCccCHHHHHHHHHHHHh
Q 017187          110 HSRSSVQKLLELVELKLK  127 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~  127 (375)
                      +++.|++++++++.+.++
T Consensus       177 ~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          177 ETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHhc
Confidence            999999999999877653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.53  E-value=4.4e-08  Score=84.54  Aligned_cols=99  Identities=16%  Similarity=0.046  Sum_probs=64.8

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..+..+|++++|+|+..+.+...  ..   +.+.  ..+.|+++|+||+|+.+...  .+...++.+..+.+++.+||++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (181)
T 3t5g_A           73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE  152 (181)
T ss_dssp             GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCC
Confidence            45678999999999976432211  11   1111  23689999999999964322  2333344445677899999999


Q ss_pred             ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHH
Q 017187          112 RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSA  150 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSs  150 (375)
                      +.|++++++.+.+.+..           .-|.+++||||
T Consensus       153 ~~~v~~l~~~l~~~~~~-----------~~~~~~~gkss  180 (181)
T 3t5g_A          153 NQTAVDVFRRIILEAEK-----------MDGACSQGKSS  180 (181)
T ss_dssp             HHHHHHHHHHHHHHHHT-----------C-----CCBSC
T ss_pred             CCCHHHHHHHHHHHHHH-----------hcCCcccCcCC
Confidence            99999999999887765           23678889886

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.52  E-value=1.3e-07  Score=91.69  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHhhhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          115 VQKLLELVELKLKEVI--SREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.+++.+++.+...+  ......+|+|+|.||||||||+|+|.+
T Consensus         9 l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g   53 (353)
T 2x2e_A            9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   53 (353)
T ss_dssp             CHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhC
Confidence            4455566665555432  124457999999999999999999997

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.51  E-value=8.2e-08  Score=94.60  Aligned_cols=63  Identities=25%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCc
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPS  194 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~  194 (375)
                      ..+.+++++|.||||||||+|+|.+           ...+.+++.|++|++...  +.+..                ...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg-----------~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~   86 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK-----------SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF   86 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH-----------STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC-----------CCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcc
Confidence            4567999999999999999999997           344588999999988753  33322                024


Q ss_pred             EEEEEcCCCCCC
Q 017187          195 IYVLDTPGVLVP  206 (375)
Q Consensus       195 ~~liDTPGi~~~  206 (375)
                      ++++||||+...
T Consensus        87 i~lvD~pGl~~~   98 (392)
T 1ni3_A           87 LTVFDIAGLTKG   98 (392)
T ss_dssp             EEEECTGGGCCC
T ss_pred             eEEEeccccccC
Confidence            799999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.2e-07  Score=82.69  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=46.3

Q ss_pred             CccCHHHHHHHHHHHHhhh--hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE
Q 017187          111 SRSSVQKLLELVELKLKEV--ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK  188 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~~--~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~  188 (375)
                      ....+..+.+.+.+.+...  ......++|+++|.+|||||||+|+|.+..         .....++..|++|.+.    
T Consensus        22 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~---------~~~~~~~~~~~~~~~~----   88 (193)
T 2ged_A           22 NKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS---------VRPTVVSQEPLSAADY----   88 (193)
T ss_dssp             TTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSS---------CC------------CC----
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCC---------CCcccccCCCceeeee----
Confidence            3455677777776665433  223567899999999999999999999710         0112233445555443    


Q ss_pred             EccCCcEEEEEcCCCCCC
Q 017187          189 IAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       189 i~~~~~~~liDTPGi~~~  206 (375)
                        ....+.++||||....
T Consensus        89 --~~~~~~l~Dt~G~~~~  104 (193)
T 2ged_A           89 --DGSGVTLVDFPGHVKL  104 (193)
T ss_dssp             --CCTTCSEEEETTCCBS
T ss_pred             --cCCeEEEEECCCCchH
Confidence              2346889999998654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.50  E-value=6.1e-07  Score=85.45  Aligned_cols=92  Identities=15%  Similarity=0.181  Sum_probs=69.9

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhH-hhc--cCCCCEEEEEEcCCCC-ChhhHHHHHHHHh-hCC--CcEEEEec
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGL-QPQ--LSAKRRVIALNKKDLA-NPNILNKWVRHFD-SCK--QDYIAINA  109 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l-~~~--~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~-~~g--~~vi~iSa  109 (375)
                      +.+...++.+|++++|+|+..+.+..+..+ .+.  ..+.|+++|+||+|+. +......+.+.+. ..+  .+++++||
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA  163 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA  163 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            445577899999999999987766544333 332  3468999999999998 6665555555554 233  57999999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +++.|++++++.+.+.+++
T Consensus       164 ~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          164 LKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             TTTBSHHHHHHHHHHHSCB
T ss_pred             CCCCCHHHHHHHHHHhCcc
Confidence            9999999999999888764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.49  E-value=7.6e-08  Score=94.82  Aligned_cols=62  Identities=27%  Similarity=0.438  Sum_probs=34.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCc
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPS  194 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~  194 (375)
                      ..+.+++++|.||||||||+|+|.+            ....+++.|++|.+...  +.+..                ...
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg------------~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~   87 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTN------------SQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAF   87 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC------------CCccccCCCccccCceeEEEEECCccceeeccccCcccccccc
Confidence            4567899999999999999999997            22477888999987653  22211                124


Q ss_pred             EEEEEcCCCCCC
Q 017187          195 IYVLDTPGVLVP  206 (375)
Q Consensus       195 ~~liDTPGi~~~  206 (375)
                      +.++||||+...
T Consensus        88 i~lvDtpGl~~~   99 (396)
T 2ohf_A           88 LNVVDIAGLVKG   99 (396)
T ss_dssp             EEEEECCC----
T ss_pred             cEEEECCCcccc
Confidence            899999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.49  E-value=5.2e-07  Score=78.34  Aligned_cols=86  Identities=21%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhh-CCCcEEEEecCCccCH
Q 017187           43 LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDS-CKQDYIAINAHSRSSV  115 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~-~g~~vi~iSa~~~~gv  115 (375)
                      ...+|+|++|+|+..+.+.....+.++  ..+.|+++|+||+|+.+......    ..+.+.. ...+++.+||+++.|+
T Consensus       102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  181 (195)
T 3pqc_A          102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGI  181 (195)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTH
T ss_pred             CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence            345599999999987655444344333  34789999999999987654433    2233333 2358999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 017187          116 QKLLELVELKLKE  128 (375)
Q Consensus       116 k~Ll~~L~~~l~~  128 (375)
                      +++++++.+.+.+
T Consensus       182 ~~l~~~l~~~l~~  194 (195)
T 3pqc_A          182 SELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.48  E-value=1.5e-07  Score=91.86  Aligned_cols=56  Identities=27%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      .|+++|.||||||||+|+|.+            ....+++.|++|++...  +.+.+ ..+.++||||+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~------------~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~  238 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTG------------LTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIR  238 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHC------------C-----------CCSCEEEEEETT-EEEEEEECCCBCS
T ss_pred             EEEEECCCCCCHHHHHHHHHC------------CCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchh
Confidence            499999999999999999997            22466778899988753  44443 4688999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.47  E-value=2.2e-07  Score=78.66  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      .++|+++|.+|||||||+|+|.+.          .......+..|++.....+.+... -.+.++||||..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   63 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN----------DFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS----------CCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence            478999999999999999999961          111233445566555544444322 158899999954

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.47  E-value=1.6e-07  Score=79.34  Aligned_cols=101  Identities=18%  Similarity=0.063  Sum_probs=67.1

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..||+.. ........++++|++++|+|+..+.+-.+  ..+..+     ..+.|+++|+||+|+.+.....++.+.+.
T Consensus        49 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  127 (164)
T 1r8s_A           49 WDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG  127 (164)
T ss_dssp             EECCCCGG-GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EEcCCChh-hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhC
Confidence            34778732 22233456899999999999987632111  122222     23689999999999976543344444332


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                           ..+.+++.+||+++.|++++++++.+.+.
T Consensus       128 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          128 LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             cccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence                 12346889999999999999999887654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.45  E-value=3.8e-07  Score=92.31  Aligned_cols=90  Identities=18%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      +++.+..++.+|++|+|+|+..+.+..+..+.+...++|+++|+||+||.+....+++.+++ ..+.+++.+||+++.|+
T Consensus       314 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi  392 (482)
T 1xzp_A          314 IERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGL  392 (482)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred             HHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCH
Confidence            35566789999999999999887654444444445678999999999997642333333333 23357899999999999


Q ss_pred             HHHHHHHHHHH
Q 017187          116 QKLLELVELKL  126 (375)
Q Consensus       116 k~Ll~~L~~~l  126 (375)
                      ++|++++.+.+
T Consensus       393 ~eL~~~l~~~~  403 (482)
T 1xzp_A          393 EKLEESIYRET  403 (482)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.45  E-value=2.6e-07  Score=80.90  Aligned_cols=62  Identities=21%  Similarity=0.233  Sum_probs=45.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+.          .....+.+.+|+|.....+.+... ..+.++||||..
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   83 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD----------HFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE   83 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC----------CCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC----------CCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence            45789999999999999999999971          112355667788776655544322 258899999954

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.44  E-value=3.3e-07  Score=78.70  Aligned_cols=62  Identities=21%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+           .........|.++.+...  +.+... -.+.++||||...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   72 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKD-----------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER   72 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH-----------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh-----------CCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            4568999999999999999999997           122222233444444332  223221 1478999999643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.44  E-value=3.2e-07  Score=79.75  Aligned_cols=101  Identities=21%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch----hHhhc-------cCCCCEEEEEEcCCCCChhhHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP----GLQPQ-------LSAKRRVIALNKKDLANPNILNKWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~----~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~~   95 (375)
                      ..|||.. ........++++|++|+|+|+..+.+..+.    .+.++       ..+.|+++|+||+||.+....++..+
T Consensus        80 Dt~G~~~-~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~  158 (198)
T 3t1o_A           80 TVPGQVF-YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRA  158 (198)
T ss_dssp             ECCSCCS-CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHH
T ss_pred             eCCChHH-HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHH
Confidence            4677521 112233578999999999999744222111    12222       15789999999999987655555666


Q ss_pred             HHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.+..+. .++.+||+++.|++++++++.+.+.+
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          159 VVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             HHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            6666677 89999999999999999998877654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.44  E-value=2.5e-07  Score=78.40  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=36.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ..++|+++|.+|||||||+|+|.+.           . ......|.++.+..  .+.+... -.+.++||||...
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   64 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVED-----------K-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER   64 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHC-----------C-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhC-----------C-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence            3578999999999999999999961           1 12223344444433  2333221 1478899999654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.44  E-value=2.7e-07  Score=78.13  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=41.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~  204 (375)
                      ...++|+++|.+|||||||+|+|.+.          .......+..|++.....+.+.. ...+.++||||..
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   66 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKG----------QFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE   66 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS----------CCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            34689999999999999999999961          11122334456665554444432 2247899999964

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.43  E-value=2.7e-07  Score=79.01  Aligned_cols=61  Identities=18%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+            ........|++|.+..  .+.+... -.+.++||||...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   70 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD------------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER   70 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS------------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence            4568999999999999999999986            1122333455554443  3333321 2478899999643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.43  E-value=1.9e-07  Score=81.03  Aligned_cols=102  Identities=17%  Similarity=0.068  Sum_probs=70.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..||+.. ........++++|++++|+|+..+.+-.+  ..+...     ..+.|+++|+||+|+.+....++..+.+.
T Consensus        67 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  145 (186)
T 1ksh_A           67 WDVGGQKS-LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE  145 (186)
T ss_dssp             EEECCSHH-HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EECCCCHh-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC
Confidence            34788743 22233456889999999999987643221  122222     24689999999999987544444444442


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                           ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          146 LDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence                 234578999999999999999999887765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.42  E-value=2.3e-07  Score=88.31  Aligned_cols=60  Identities=18%  Similarity=0.158  Sum_probs=45.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE--EEccCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF--KIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~--~i~~~~~~~liDTPGi~  204 (375)
                      ..++|+++|.||||||||+|.+.+           .....++..+|+|.+....  .+.+.-.+.++||||..
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~-----------~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~   63 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFS-----------NYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD   63 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHS-----------CCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh-----------CCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence            357899999999999999999986           2334556678888877643  33333358899999975

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.41  E-value=4.4e-07  Score=77.03  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHc
Confidence            4568999999999999999999996

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.41  E-value=2.8e-07  Score=77.54  Aligned_cols=87  Identities=17%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCcc
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRS  113 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~  113 (375)
                      +.....+..+|++++|+|+..+.+.....+.++  ..+.|+++|+||+|+.+...  ...++. +.+. +++.+||+++.
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~~~~~~Sa~~~~  147 (161)
T 2dyk_A           71 EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YLGPLY-GLGFGDPIPTSSEHAR  147 (161)
T ss_dssp             HHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GCGGGG-GGSSCSCEECBTTTTB
T ss_pred             HHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hHHHHH-hCCCCCeEEEecccCC
Confidence            345567899999999999988765544444444  24789999999999976521  111222 3455 68999999999


Q ss_pred             CHHHHHHHHHHHH
Q 017187          114 SVQKLLELVELKL  126 (375)
Q Consensus       114 gvk~Ll~~L~~~l  126 (375)
                      |++++++++.+.+
T Consensus       148 gv~~l~~~l~~~l  160 (161)
T 2dyk_A          148 GLEELLEAIWERL  160 (161)
T ss_dssp             SHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHhC
Confidence            9999999887654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.41  E-value=6.3e-07  Score=79.81  Aligned_cols=102  Identities=14%  Similarity=-0.017  Sum_probs=70.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhcc-----CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQL-----SAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~~-----~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      -..||+. +........++.+|++|+|+|+..+.+..+  ..+..+.     .+.|+++|+||+|+.+...  .+...++
T Consensus        89 ~Dt~G~~-~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  167 (217)
T 2f7s_A           89 WDTAGQE-RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL  167 (217)
T ss_dssp             EEEESHH-HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EECCCcH-hHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence            3578874 333445677899999999999976533211  1122221     5689999999999975322  2233333


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ....+.+++.+||+++.|++++++++.+.+.+
T Consensus       168 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          168 ADKYGIPYFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             HHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44557789999999999999999998876654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.41  E-value=2.7e-07  Score=77.80  Aligned_cols=101  Identities=14%  Similarity=0.054  Sum_probs=67.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      -..||+.. ........+..+|++++|+|+..+.+...  ..+..+   .  .+.|+++|+||+|+.+...  .++..++
T Consensus        57 ~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  135 (168)
T 1u8z_A           57 LDTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR  135 (168)
T ss_dssp             EECCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EECCCcch-hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH
Confidence            44788742 22344567889999999999986532111  111111   1  3789999999999975321  2334444


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+..+.+++.+||+++.|++++++++.+.+.
T Consensus       136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          136 ADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             HHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            4455678999999999999999999887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.41  E-value=1.5e-07  Score=80.66  Aligned_cols=60  Identities=30%  Similarity=0.474  Sum_probs=41.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      ....+|+++|.+|||||||+|+|.+            ........|++|.+...  +.+. +..+.++||||...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~   67 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH------------SKVTEQEAGGITQHIGAYQVTVN-DKKITFLDTPGHEA   67 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT------------TCSSCSSCCSSSTTCCCCEEEET-TEEEEESCCCSSSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC------------CccccCCCCceeEeeeEEEEEeC-CceEEEEECCCCHH
Confidence            4578999999999999999999996            11223344555555432  3233 23588999999754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.41  E-value=6.1e-07  Score=90.79  Aligned_cols=112  Identities=20%  Similarity=0.161  Sum_probs=77.7

Q ss_pred             ceEEeeCCCc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhH
Q 017187           15 EMGFTKGGGN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNIL   90 (375)
Q Consensus        15 ~~~~~~~~~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~   90 (375)
                      ...+.....+  +-..|||. +..+.+...+..+|++|+|+|++.+...........  ..+.|.++|+||+|+.+++..
T Consensus        65 ~~~~~~~~~~i~iiDtPGh~-~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~  143 (482)
T 1wb1_A           65 FSAFKLENYRITLVDAPGHA-DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI  143 (482)
T ss_dssp             CCEEEETTEEEEECCCSSHH-HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH
T ss_pred             eEEEEECCEEEEEEECCChH-HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH
Confidence            3444444322  45689994 456778888999999999999987543222111111  356888999999999975433


Q ss_pred             H----HHHHHHhhC----CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           91 N----KWVRHFDSC----KQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        91 ~----~~~~~~~~~----g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +    ++.+++...    +.+++++||+++.|+++|+++|.+.++
T Consensus       144 ~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          144 KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            2    233444333    457899999999999999999988765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.41  E-value=2.2e-07  Score=80.90  Aligned_cols=102  Identities=18%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..||+.. ........++++|++|+|+|+..+.+-.+  ..+...     ..+.|+++|+||+|+.+....+++.+.+.
T Consensus        65 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~  143 (187)
T 1zj6_A           65 WDIGGQES-LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK  143 (187)
T ss_dssp             EECCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             EECCCCHh-HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhC
Confidence            34677732 22233466889999999999987643211  122222     24789999999999986433334444432


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                           ..+..++.+||+++.|++++++++.+.+..
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          144 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             hhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence                 234578999999999999999999877644

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.41  E-value=5.3e-07  Score=77.06  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=38.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~  204 (375)
                      ..++|+|+|.+|||||||+|+|.+.           . ......|.++.+..  .+.+... -.+.++||||..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   74 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYD-----------S-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   74 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS-----------C-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC-----------C-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence            4589999999999999999999961           1 12222344444443  2333321 147899999964

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.40  E-value=4.6e-07  Score=77.53  Aligned_cols=62  Identities=21%  Similarity=0.212  Sum_probs=37.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+++|.+|||||||+|+|.+.          .......+..|.+.....+.+... -.+.++||||..
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   67 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTN----------KFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE   67 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHS----------CCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence            34679999999999999999999961          011122222333332233333321 158899999953

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.40  E-value=4.1e-07  Score=76.88  Aligned_cols=25  Identities=36%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHc
Confidence            3568999999999999999999996

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.40  E-value=5.1e-07  Score=89.38  Aligned_cols=103  Identities=19%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCc-hhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-SSAH-PGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-s~~~-~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~   96 (375)
                      +-..|||. +..+.+...+..+|++|+|+|++.+. .... ..+..+  ...+|+++|+||+|+.+.+.    .+++.++
T Consensus        87 iiDtPGh~-~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~  165 (410)
T 1kk1_A           87 FIDAPGHE-ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF  165 (410)
T ss_dssp             EEECSSHH-HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EEECCChH-HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence            34589995 45566777788999999999998764 1111 111111  34468999999999987643    2334455


Q ss_pred             Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..   .+.+++++|++++.|+++|+++|...++.
T Consensus       166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            532   34689999999999999999999887654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.39  E-value=3.6e-07  Score=96.49  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCe
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV  180 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~  180 (375)
                      ...++|+|+|.||||||||+|+|.+           .....++..|+|
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg-----------~~~~~v~~~p~T  103 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIG-----------ENLLPSDVNPCT  103 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHT-----------SSCSCCCCCTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCCCCCc
Confidence            4678999999999999999999997           345667777777

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.39  E-value=4.8e-07  Score=76.83  Aligned_cols=58  Identities=16%  Similarity=0.302  Sum_probs=38.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ...++|+++|.+|||||||+|+|.+           .......+..|.+..  .+.+. ...+.++||||..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~   62 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV-----------GEVVTTIPTIGFNVE--TVTYK-NLKFQVWDLGGLT   62 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEEE--EEEET-TEEEEEEEECCCG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCCcCCcCccceE--EEEEC-CEEEEEEECCCCh
Confidence            4568999999999999999999986           122222233333322  23333 3358899999974

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.38  E-value=3.1e-07  Score=79.53  Aligned_cols=102  Identities=11%  Similarity=-0.019  Sum_probs=69.4

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      -..|||. +........++++|++|+|+|+..+.+..+  ..+..+   .  .+.|+++|+||+|+.+...  .+...++
T Consensus        75 ~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  153 (195)
T 3bc1_A           75 WDTAGLE-RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL  153 (195)
T ss_dssp             EEECCSG-GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EeCCCcH-HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence            3467773 223345567899999999999976543221  112222   1  5789999999999975321  2233334


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ....+.+++.+|++++.|++++++++.+.+.+
T Consensus       154 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          154 AEKYGIPYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44456789999999999999999998877654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.38  E-value=6.4e-07  Score=78.03  Aligned_cols=61  Identities=18%  Similarity=0.277  Sum_probs=40.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+            ........|++|.+..  .+.+... -.+.++||||...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   77 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFAD------------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER   77 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHc------------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence            3468999999999999999999996            1122233344444433  3334322 1478999999643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.38  E-value=3.1e-07  Score=79.08  Aligned_cols=102  Identities=13%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChh--hHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPN--ILNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~--~~~~~~~~   96 (375)
                      -..|||.. ........+..+|++++|+|+..+.+...  ..+..+   .  .+.|+++|+||+|+.+..  ..++..++
T Consensus        71 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  149 (187)
T 2a9k_A           71 LDTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR  149 (187)
T ss_dssp             EECCCTTC-CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EECCCCcc-cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH
Confidence            34677642 22334466889999999999986532111  111111   2  378999999999997532  23344455


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+..+.+++.+|++++.|++++++++.+.+.+
T Consensus       150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          150 AEQWNVNYVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            55667789999999999999999999877654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.38  E-value=5.1e-07  Score=79.87  Aligned_cols=61  Identities=20%  Similarity=0.285  Sum_probs=39.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.           . ......|.++.+..  .+.+... -.+.++||||...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   81 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED-----------K-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER   81 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC-----------C-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC-----------C-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            45689999999999999999999961           1 12223344444433  3333321 2488999999654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.37  E-value=2.7e-07  Score=79.20  Aligned_cols=101  Identities=12%  Similarity=0.029  Sum_probs=65.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+...  .+...++.+
T Consensus        66 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  144 (180)
T 2g6b_A           66 DTAGQER-FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK  144 (180)
T ss_dssp             ECCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred             eCCCcHH-HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence            4788743 22334456899999999999986543211  112222    14689999999999985421  223333334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          145 EYGLPFMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             HHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999998877653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.37  E-value=6.5e-07  Score=75.31  Aligned_cols=23  Identities=39%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|+|.+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            57899999999999999999996

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.37  E-value=6.7e-07  Score=77.24  Aligned_cols=60  Identities=17%  Similarity=0.241  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+.           . ......|.++.+..  .+.+... -.+.++||||..
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   70 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK-----------K-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE   70 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS-----------S-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC-----------C-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            34689999999999999999999961           1 11222333443332  2333321 157899999953

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.37  E-value=5.1e-07  Score=89.35  Aligned_cols=114  Identities=19%  Similarity=0.192  Sum_probs=69.9

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC-Cc-hhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS-AH-PGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~-~~-~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~   97 (375)
                      -..|||. +..+.+...+..+|++|+|+|++.+... +. ..+..+  ...+|+++|+||+|+.+.+.    .+++.+++
T Consensus        86 iDtPGh~-~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l  164 (408)
T 1s0u_A           86 VDSPGHE-TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV  164 (408)
T ss_dssp             EECSSHH-HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred             EECCCHH-HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            4579995 4455666667888999999999876411 11 111111  34468999999999986532    33444555


Q ss_pred             hh---CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEE
Q 017187           98 DS---CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMV  140 (375)
Q Consensus        98 ~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~v  140 (375)
                      ..   .+.+++++||+++.|+++|+++|.+.++.. .....+.+..+
T Consensus       165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v  211 (408)
T 1s0u_A          165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYV  211 (408)
T ss_dssp             TTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEE
T ss_pred             hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEE
Confidence            32   245799999999999999999998876542 12233445544

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.37  E-value=4e-07  Score=79.35  Aligned_cols=89  Identities=18%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--c-----CCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEE
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--L-----SAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYI  105 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--~-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi  105 (375)
                      ...++++|++|+|+|+..+.+-.+  ..+..+  .     .+.|+++|+||+|+.+....+++.+++.     ..+..++
T Consensus        85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T 2h57_A           85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHIC  164 (190)
T ss_dssp             GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEE
Confidence            356789999999999986532111  122222  1     4789999999999986544444444442     2345789


Q ss_pred             EEecCCccCHHHHHHHHHHHHhh
Q 017187          106 AINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       106 ~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+||+++.|++++++++.+.+.+
T Consensus       165 ~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          165 ASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EccCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999877643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.36  E-value=2e-06  Score=85.91  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=69.3

Q ss_pred             hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCch-hHhhc-cCCCC-
Q 017187            9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-------SAHP-GLQPQ-LSAKR-   74 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-------~~~~-~l~~~-~~~kp-   74 (375)
                      +|+++......+...+    +-.-|||- +..+.+...+..+|++|+|+|++.+..       .+.. .+... ..+.| 
T Consensus        79 ~GiTid~~~~~~~~~~~~~~iiDTPGh~-~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~  157 (439)
T 3j2k_7           79 KGKTVEVGRAYFETEKKHFTILDAPGHK-SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH  157 (439)
T ss_pred             cCceEEEeEEEEecCCeEEEEEECCChH-HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence            4555443333333322    45689994 557778888999999999999987643       1111 11111 34566 


Q ss_pred             EEEEEEcCCCCCh----hhH----HHHHHHHhhCC------CcEEEEecCCccCHHHHHH
Q 017187           75 RVIALNKKDLANP----NIL----NKWVRHFDSCK------QDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        75 ~IiVlNK~DL~~~----~~~----~~~~~~~~~~g------~~vi~iSa~~~~gvk~Ll~  120 (375)
                      +|+|+||+|+.+.    +..    ++..+++.+.+      .+++++||+++.|+.++.+
T Consensus       158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            8999999999642    111    22333333333      3689999999999988543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.36  E-value=3.1e-07  Score=80.72  Aligned_cols=101  Identities=18%  Similarity=0.083  Sum_probs=65.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..||+.. ........++++|++|+|+|+..+.+-.+  ..+.++     ..+.|+++|+||+|+.+....+++.+.+.
T Consensus        78 ~Dt~G~~~-~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~  156 (192)
T 2b6h_A           78 WDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLG  156 (192)
T ss_dssp             EECC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EECCCCHh-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhC
Confidence            34788732 22233457889999999999987632211  122222     13689999999999976543344444332


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                           ..+.+++.+||+++.|++++++++.+.+.
T Consensus       157 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          157 LQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             cccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence                 12346889999999999999999877653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.36  E-value=4.6e-07  Score=79.02  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=67.9

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..||+.. ........+..+|++|+|+|+..+.+...  ..+..+     ..+.|+++|+||+|+.+.....++.+.+.
T Consensus        72 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  150 (188)
T 1zd9_A           72 WDIGGQPR-FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN  150 (188)
T ss_dssp             EEECCSHH-HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EECCCCHh-HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC
Confidence            34788743 22334566799999999999976533211  122222     25789999999999986533334444432


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                           ..+..++.+||+++.|++++++++.+.+.
T Consensus       151 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          151 LSAIQDREICCYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             hhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence                 22346789999999999999999877654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.36  E-value=4e-07  Score=77.84  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=68.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+...  .++..++.+
T Consensus        70 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  148 (179)
T 1z0f_A           70 DTAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE  148 (179)
T ss_dssp             ECTTGGG-TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ECCCChH-hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence            4677632 22335567899999999999986533211  111111    25688999999999974322  234444555


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ..+..++.+||+++.|++++++++.+.+
T Consensus       149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          149 ENGLLFLEASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5677899999999999999999887665

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.36  E-value=8.1e-07  Score=78.20  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.           . ......|.++.+..  .+.+... -.+.++||||...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK-----------K-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER   69 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS-----------C-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC-----------C-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            45789999999999999999999971           1 11122233333333  2333221 1478999999643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.36  E-value=7.8e-07  Score=77.40  Aligned_cols=25  Identities=20%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|.+
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999999997

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.35  E-value=1e-07  Score=92.37  Aligned_cols=57  Identities=25%  Similarity=0.316  Sum_probs=44.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      +|+++|.||||||||||+|.+            ....+++.|++|.....  +.+.....+.++||||+..
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~------------~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~  218 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSS------------AKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE  218 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE------------ECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHc------------CCCccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence            588999999999999999986            23456788888887663  3344335699999999754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.35  E-value=5.5e-07  Score=78.67  Aligned_cols=101  Identities=17%  Similarity=0.032  Sum_probs=67.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-c-----------CCCCEEEEEEcCCCCChhhHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-L-----------SAKRRVIALNKKDLANPNILNK   92 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-~-----------~~kp~IiVlNK~DL~~~~~~~~   92 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+-.+  ..+..+ .           .+.|+++|+||+||.+....++
T Consensus        69 Dt~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~  147 (199)
T 4bas_A           69 DMGGAKK-FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE  147 (199)
T ss_dssp             EECCSGG-GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH
T ss_pred             ECCCCHh-HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH
Confidence            3567632 12223355789999999999987643111  122222 1           1789999999999987643333


Q ss_pred             HHHHH------hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           93 WVRHF------DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        93 ~~~~~------~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.+.+      +..+..++.+||+++.|+++++++|.+.+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          148 LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            33332      2345678999999999999999999887765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.35  E-value=7.3e-07  Score=77.78  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=40.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.           ... ...+..|++.....+.+.. .-.+.++||||...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN-----------EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER   86 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS-----------CCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC-----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence            44689999999999999999999971           111 1222334444333333322 12478999999854

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.35  E-value=7.6e-07  Score=77.09  Aligned_cols=58  Identities=19%  Similarity=0.358  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ...++|+++|.+|||||||+|+|.+           .......+..|.+..  .+.+. ...+.++||||..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~   73 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG-----------EDVDTISPTLGFNIK--TLEHR-GFKLNIWDVGGQK   73 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT-----------CCCSSCCCCSSEEEE--EEEET-TEEEEEEEECCSH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc-----------CCCCcccccCccceE--EEEEC-CEEEEEEECCCCH
Confidence            4678999999999999999999996           122333334444432  23232 3368899999973

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.35  E-value=6.7e-07  Score=76.40  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+.          .......+..|.+.....+.+... -.+.++||||..
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK----------KFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE   75 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS----------CCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence            44689999999999999999999971          111222233344444434434321 247899999954

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.35  E-value=9.3e-07  Score=84.02  Aligned_cols=91  Identities=16%  Similarity=0.044  Sum_probs=66.5

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc-c---CCCCEEEEEEcCCCCChhh-HHHHHHHHhhCCCcEEEEecCC
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-L---SAKRRVIALNKKDLANPNI-LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-~---~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ......++.+|++++|+|+..+.+.....+.+. .   .+.|+++|+||+|+.+... +.++.+.+ ....+++++||++
T Consensus        78 ~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~  156 (301)
T 1wf3_A           78 QEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALD  156 (301)
T ss_dssp             HHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTC
T ss_pred             HHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCC
Confidence            455678899999999999988765544444332 1   2789999999999986544 44444443 1223689999999


Q ss_pred             ccCHHHHHHHHHHHHhh
Q 017187          112 RSSVQKLLELVELKLKE  128 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~  128 (375)
                      +.|++++++.+...+++
T Consensus       157 g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          157 ERQVAELKADLLALMPE  173 (301)
T ss_dssp             HHHHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999998876643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.34  E-value=7.3e-07  Score=78.13  Aligned_cols=59  Identities=20%  Similarity=0.322  Sum_probs=39.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      .+..+|+++|.+|||||||+|+|.+           .+.....+..|.+..  .+.+.+ -.+.++||||...
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~~-~~~~i~Dt~G~~~   79 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN-----------DRLATLQPTWHPTSE--ELAIGN-IKFTTFDLGGHIQ   79 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH-----------SCCCCCCCCCSCEEE--EEEETT-EEEEEEECCCSGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCccccCCCCCeE--EEEECC-EEEEEEECCCCHH
Confidence            3457899999999999999999996           122334444455432  333333 3588999999754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.34  E-value=5.9e-07  Score=76.28  Aligned_cols=101  Identities=18%  Similarity=0.098  Sum_probs=67.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+-.+  ..+..+     ..+.|+++|+||+|+.+.....++.+.+. 
T Consensus        57 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  135 (171)
T 1upt_A           57 DLGGLTS-IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL  135 (171)
T ss_dssp             EECCCGG-GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG
T ss_pred             ECCCChh-hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc
Confidence            3667632 11223356789999999999987643211  122222     15789999999999987543334443332 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                          ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          136 PALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence                234578999999999999999999877653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.33  E-value=8.5e-07  Score=77.05  Aligned_cols=62  Identities=23%  Similarity=0.331  Sum_probs=41.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ..++|+|+|.+|||||||+|+|.+.          .......+..|++.....+.+... ..+.++||||...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   76 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD----------TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER   76 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS----------CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC----------CCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence            4589999999999999999999971          111223344455555444444322 2478999999653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.33  E-value=4.3e-07  Score=81.34  Aligned_cols=63  Identities=17%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+++. +         .......+.+|+|.....+.+... -.+.++||||...
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~-~---------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   76 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLT-G---------EFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK   76 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHH-H---------HHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc-C---------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence            4568999999999999999999553 1         123455677888887765544432 2478999999643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.32  E-value=3e-07  Score=89.89  Aligned_cols=59  Identities=31%  Similarity=0.420  Sum_probs=42.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEc--------------------cCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIA--------------------HRP  193 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~--------------------~~~  193 (375)
                      +++++||.||||||||+|+|.+.            .+.+++.|++|.....  ..+.                    ...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~------------~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~   69 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA------------NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPT   69 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH------------HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC------------CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCc
Confidence            35899999999999999999971            2456677777765431  1111                    122


Q ss_pred             cEEEEEcCCCCCC
Q 017187          194 SIYVLDTPGVLVP  206 (375)
Q Consensus       194 ~~~liDTPGi~~~  206 (375)
                      .+.++||||+...
T Consensus        70 ~i~lvDtpGl~~~   82 (368)
T 2dby_A           70 HVEFVDIAGLVKG   82 (368)
T ss_dssp             EEEEEECCSCCCC
T ss_pred             eEEEEECCCcccc
Confidence            5899999999764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.32  E-value=8.9e-07  Score=88.84  Aligned_cols=94  Identities=13%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHhh-----CCCcEE
Q 017187           35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFDS-----CKQDYI  105 (375)
Q Consensus        35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~-----~g~~vi  105 (375)
                      ...+....++.+|++|+|+|+..+.+..+..+...  ..++|+++|+||+|+.+..  ..++..+++++     .+.+++
T Consensus       267 ~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          267 SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            33445567899999999999998776555444444  3679999999999998542  22333333321     145899


Q ss_pred             EEecCCccCHHHHHHHHHHHHhh
Q 017187          106 AINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       106 ~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++||+++.|++++++.+.+.+..
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999887765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.32  E-value=9.8e-07  Score=76.79  Aligned_cols=63  Identities=14%  Similarity=0.202  Sum_probs=41.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.          .......+..|++.....+.... .-.+.++||||...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   83 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD----------SFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER   83 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS----------CCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC----------CCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence            34689999999999999999999971          11112233445555444333332 12578999999654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.31  E-value=1.2e-06  Score=73.64  Aligned_cols=24  Identities=38%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.+|||||||+|+|.+
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999999997

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.31  E-value=3.8e-07  Score=88.50  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....++++|.||||||||+|+|.+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999999986

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.31  E-value=1.4e-06  Score=75.11  Aligned_cols=100  Identities=15%  Similarity=0.036  Sum_probs=65.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+     ..+.|+++|+||+|+.+...  .+...++.
T Consensus        72 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~  150 (183)
T 3kkq_A           72 DTAGQEE-FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA  150 (183)
T ss_dssp             ECCSCGG-GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH
T ss_pred             ECCCchh-hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH
Confidence            3566532 11223456789999999999986532111  111111     25689999999999975321  22233333


Q ss_pred             hhCCCcEEEEecC-CccCHHHHHHHHHHHHh
Q 017187           98 DSCKQDYIAINAH-SRSSVQKLLELVELKLK  127 (375)
Q Consensus        98 ~~~g~~vi~iSa~-~~~gvk~Ll~~L~~~l~  127 (375)
                      +..+.+++.+||+ ++.|++++++.+.+.+.
T Consensus       151 ~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          151 TKYNIPYIETSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             HHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             HHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence            3446789999999 99999999999887664

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.31  E-value=9.1e-07  Score=76.35  Aligned_cols=59  Identities=29%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ..++|+++|.+|||||||+|+|.+.           .  .....++++.+..  .+.+... ..+.++||||...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   64 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN-----------H--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   64 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS-----------S--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC-----------C--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence            4679999999999999999999961           1  1222333443332  2222221 1266799999654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.31  E-value=6.7e-07  Score=78.72  Aligned_cols=62  Identities=18%  Similarity=0.287  Sum_probs=36.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+.          .-.....+..|++.....+.+... ..+.++||||..
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   88 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN----------EFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE   88 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC----------CCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC----------CCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence            45789999999999999999999961          111233344455544444444322 247899999964

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.30  E-value=1.1e-06  Score=76.37  Aligned_cols=62  Identities=23%  Similarity=0.204  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+. .         ......+..|++.....+.+... -.+.++||||..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~-~---------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   80 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAG-R---------FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE   80 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS-S---------CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC-C---------CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence            45689999999999999999999861 1         11112222233333333333321 258899999953

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.30  E-value=1.2e-06  Score=77.02  Aligned_cols=61  Identities=15%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~  204 (375)
                      ..++|+|+|.+|||||||+|+|.+.          .......+..|++.....+.+.. ...+.++||||..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD----------SFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE   68 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC----------CCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC----------CCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence            3579999999999999999999961          11122233345555444443332 1257899999974

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.30  E-value=6.4e-07  Score=77.51  Aligned_cols=59  Identities=19%  Similarity=0.312  Sum_probs=40.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+           .....+.+..|.+..  .+.+. +..+.++||||...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~   77 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVIN-NTRFLMWDIGGQES   77 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHT-----------TSCEEEECCSSSSCE--EEEET-TEEEEEEEESSSGG
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCcCceeeE--EEEEC-CEEEEEEECCCCHh
Confidence            4578999999999999999999997           122344455554432  23232 34688999999743

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.30  E-value=9e-07  Score=76.21  Aligned_cols=59  Identities=17%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+           .......+..|.+..  .+.+. +..+.++||||...
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~   74 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI-----------GEVVTTKPTIGFNVE--TLSYK-NLKLNVWDLGGQTS   74 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC-----------SEEEEECSSTTCCEE--EEEET-TEEEEEEEEC----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCcCccCCcCccceE--EEEEC-CEEEEEEECCCCHh
Confidence            5689999999999999999999985           122344444554332  23232 23588999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.30  E-value=1.4e-06  Score=75.64  Aligned_cols=59  Identities=19%  Similarity=0.313  Sum_probs=38.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+           .....+.+..|.+..  .+.+. +..+.++||||...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~   72 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVIN-NTRFLMWDIGGQES   72 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT-----------TSCEEEECCSCSSCE--EEEET-TEEEEEEECCC---
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCcCcCCCccceE--EEEEC-CEEEEEEECCCCHh
Confidence            5678999999999999999999996           111233333443322  22232 34688999999854

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.29  E-value=5.1e-07  Score=92.84  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc--ccCCCCCeeee
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA--TVGPLPGVTQD  183 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~--~v~~~pg~T~~  183 (375)
                      ...+|+|+|.+|||||||+|+|++           .+.+  .++..|+||+.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg-----------~~~~~~~vs~~p~T~~~  104 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLE-----------QEVPGSRVGPEPTTDCF  104 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHT-----------SCCSSCCCCSSCCCCSE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC-----------CccccCccCCCCccceE
Confidence            457999999999999999999997           2222  46777777653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.29  E-value=7.8e-07  Score=77.34  Aligned_cols=88  Identities=17%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEEEe
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIAIN  108 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~iS  108 (375)
                      ..++++|++|+|+|+..+.+-.+  ..+.+.     ..+.|+++|+||+|+.+.....++.+.+.     ..+.+++.+|
T Consensus        85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  164 (189)
T 2x77_A           85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS  164 (189)
T ss_dssp             SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence            35679999999999987643211  122222     14689999999999986543333333331     2344688999


Q ss_pred             cCCccCHHHHHHHHHHHHhh
Q 017187          109 AHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l~~  128 (375)
                      |+++.|++++++++.+.+.+
T Consensus       165 a~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          165 SKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             TTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHh
Confidence            99999999999999887755

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.29  E-value=5e-07  Score=76.02  Aligned_cols=100  Identities=14%  Similarity=0.030  Sum_probs=66.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+.. ........++.+|.+++|+|+..+.+..+  ..+..+     ..+.|+++|+||+|+.+...  .+...++.
T Consensus        57 D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  135 (167)
T 1kao_A           57 DTAGTEQ-FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA  135 (167)
T ss_dssp             ECCCTTC-CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             ECCCchh-hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH
Confidence            4677532 12233456889999999999986532111  111111     24789999999999975322  22233333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +..+.+++.+||+++.|++++++++.+.+.
T Consensus       136 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          136 EEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            345678999999999999999999887664

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.29  E-value=8.4e-07  Score=77.71  Aligned_cols=100  Identities=9%  Similarity=-0.030  Sum_probs=66.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+.     .+... ..+.|+++|+||+|+.+...  .+...++.+
T Consensus        81 Dt~G~~~-~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~  159 (192)
T 2il1_A           81 DTAGQER-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQ  159 (192)
T ss_dssp             EECCSGG-GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             eCCCcHH-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence            4677632 223345678999999999999875432211     11111 24689999999999975322  122233333


Q ss_pred             h-CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 S-CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~-~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      . .+..++.+||+++.|++++++++.+.+.
T Consensus       160 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          160 QITGMRFCEASAKDNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             TSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3 2668899999999999999999877664

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.29  E-value=1.1e-06  Score=77.64  Aligned_cols=102  Identities=16%  Similarity=-0.007  Sum_probs=69.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~   97 (375)
                      -..||+.. ........++++|++|+|+|+..+.+-.+  ..+..+    ..+.|+++|+||+||.+..  ..++..++.
T Consensus        83 ~Dt~G~~~-~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~  161 (201)
T 2hup_A           83 WDTAGQER-FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLA  161 (201)
T ss_dssp             ECCTTCGG-GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EECCCcHh-HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHH
Confidence            34788742 22334567899999999999876533111  112222    1468999999999997532  123344444


Q ss_pred             hhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQ-DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+. .++.+||+++.|++++++++.+.+.+
T Consensus       162 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          162 EHYDILCAIETSAKDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            45677 88999999999999999998877654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.29  E-value=1e-06  Score=75.61  Aligned_cols=61  Identities=15%  Similarity=0.103  Sum_probs=38.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+++|.+|||||||+|+|.+.           ... ...+..|++.....+.+... ..+.++||||..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   72 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD-----------QFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   72 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC-----------CCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC-----------CCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence            45689999999999999999999961           111 11122233333333333321 258899999954

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.28  E-value=1e-06  Score=77.82  Aligned_cols=103  Identities=11%  Similarity=0.009  Sum_probs=67.6

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH-HHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL-NKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~-~~~~~~~~   98 (375)
                      -..|||... .......+..+|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+.... +...++..
T Consensus        74 ~Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  152 (213)
T 3cph_A           74 WDTAGQERF-RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK  152 (213)
T ss_dssp             ECCTTGGGG-TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH
T ss_pred             EeCCCcHHH-HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH
Confidence            346776421 2223466889999999999976532111  112222    136899999999999543222 22223333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKEV  129 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~  129 (375)
                      ..+.+++.+||+++.|++++++++.+.+.+.
T Consensus       153 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             HHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            4467899999999999999999998877653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.28  E-value=1.4e-06  Score=73.43  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|+|.+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            57899999999999999999996

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.27  E-value=1.2e-06  Score=77.36  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.           . ......|.++.+..  .+.+... -.+.++||||...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD-----------T-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER   69 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC-----------C-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC-----------C-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence            34579999999999999999999971           1 11222333333332  3333321 1488999999754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.27  E-value=1.6e-06  Score=74.05  Aligned_cols=60  Identities=28%  Similarity=0.201  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+.             ..+...++++....  .+.+... ..+.++||||...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~-------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   69 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS-------------YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE   69 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS-------------SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC-------------cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence            45689999999999999999999971             11222333333322  1223221 2477899999754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.27  E-value=1.2e-06  Score=74.10  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.+|||||||+|+|.+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            357899999999999999999996

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.26  E-value=8.7e-07  Score=76.95  Aligned_cols=100  Identities=18%  Similarity=0.097  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      ..||+.. ........+..+|++++|+|+..+.+-.+  ..+.++     ..+.|+++|+||+|+.+....++..+.+. 
T Consensus        66 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  144 (181)
T 1fzq_A           66 DIGGQRK-IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL  144 (181)
T ss_dssp             ECSSCGG-GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG
T ss_pred             ECCCCHH-HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCc
Confidence            4677632 12223466889999999999976533211  122222     24689999999999986544444444432 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                          ..+..++.+||+++.|++++++++.+.+.
T Consensus       145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred             hhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence                12346889999999999999999876653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.26  E-value=5.7e-07  Score=78.13  Aligned_cols=58  Identities=17%  Similarity=0.348  Sum_probs=40.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ...++|+++|.+|||||||+|.|.+           .....+.+.+|.+...  +.+. +-.+.++||||..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~-----------~~~~~~~~t~g~~~~~--~~~~-~~~l~i~Dt~G~~   71 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS-----------EDISHITPTQGFNIKS--VQSQ-GFKLNVWDIGGQR   71 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC-----------SCCEEEEEETTEEEEE--EEET-TEEEEEEECSSCG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc-----------CCCCcccCcCCeEEEE--EEEC-CEEEEEEECCCCH
Confidence            4678999999999999999999986           1223344555655432  2233 3358899999964

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.26  E-value=1.7e-06  Score=75.14  Aligned_cols=101  Identities=10%  Similarity=0.008  Sum_probs=68.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--cCCCCEEEEEEcCCCCCh-hhHHHHHHHHhhCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--LSAKRRVIALNKKDLANP-NILNKWVRHFDSCK  101 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--~~~kp~IiVlNK~DL~~~-~~~~~~~~~~~~~g  101 (375)
                      ..|||.. ........++.+|++|+|+|+..+.+..+  ..+..+  ..+.|+++|+||+|+... ...++..++.++.+
T Consensus        99 Dt~G~~~-~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~  177 (208)
T 3clv_A           99 DTAGQER-YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNN  177 (208)
T ss_dssp             ECTTGGG-CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTT
T ss_pred             ECCCcHH-HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcC
Confidence            3677632 22234567889999999999987633211  112222  245899999999994322 22345555665667


Q ss_pred             CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          102 QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+++.+||+++.|++++++++.+.+.+
T Consensus       178 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          178 LLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            889999999999999999998876644

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.26  E-value=1.1e-06  Score=77.11  Aligned_cols=102  Identities=13%  Similarity=0.047  Sum_probs=68.5

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChh--hHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPN--ILNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~--~~~~~~~~   96 (375)
                      -..||+.. ........+..+|++++|+|+..+.+...  ..+..+   .  .+.|+++|+||+|+.+..  ..+...++
T Consensus        67 ~Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  145 (206)
T 2bov_A           67 LDTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR  145 (206)
T ss_dssp             EECCCTTC-CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EcCCChhh-hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH
Confidence            34677632 22234466889999999999976532111  111111   2  378999999999997532  22344444


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+..+.+++.+||+++.|++++++++.+.+.+
T Consensus       146 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          146 AEQWNVNYVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             HHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            44556789999999999999999998877654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.25  E-value=1.3e-06  Score=75.19  Aligned_cols=62  Identities=18%  Similarity=0.120  Sum_probs=38.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLVP  206 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~~  206 (375)
                      ..++|+++|.+|||||||+|+|.+.          .......+..+.+. ...+.+... -.+.++||||....
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~   67 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG----------QFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEY   67 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS----------SCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC----------CCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhh
Confidence            4679999999999999999999961          11122223333333 122223221 13679999997653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.25  E-value=1.8e-06  Score=75.75  Aligned_cols=25  Identities=36%  Similarity=0.320  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|.+
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999996

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.25  E-value=1e-06  Score=75.86  Aligned_cols=102  Identities=16%  Similarity=0.054  Sum_probs=66.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..||+.. ........++++|++++|+|+..+.+-..  ..+...     ..+.|+++|+||+|+.+.....++.+++.
T Consensus        67 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~  145 (183)
T 1moz_A           67 WDLGGQTS-IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN  145 (183)
T ss_dssp             EEEC-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EECCCCHh-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC
Confidence            34677642 11223456789999999999987633211  122222     25689999999999986543444444442


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                           ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          146 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             TTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence                 123468999999999999999999877654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.25  E-value=1.1e-06  Score=75.36  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999999997

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.24  E-value=6.9e-07  Score=77.32  Aligned_cols=85  Identities=18%  Similarity=0.073  Sum_probs=59.1

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEEE
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIAI  107 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~i  107 (375)
                      ...++++|++|+|+|+..+.+-.+  ..+...     ..+.|+++|+||+||.+....+++.+++.     ..+..++.+
T Consensus        83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  162 (181)
T 2h17_A           83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC  162 (181)
T ss_dssp             GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence            356789999999999987633211  122222     25689999999999976433334444332     234478999


Q ss_pred             ecCCccCHHHHHHHHHH
Q 017187          108 NAHSRSSVQKLLELVEL  124 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~  124 (375)
                      ||+++.|++++++++.+
T Consensus       163 Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          163 CALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             BTTTTBTHHHHHHHHHT
T ss_pred             cCCCCcCHHHHHHHHHh
Confidence            99999999999988754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.24  E-value=1.9e-06  Score=72.16  Aligned_cols=23  Identities=43%  Similarity=0.514  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|+|.+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999996

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.24  E-value=1.7e-06  Score=76.77  Aligned_cols=59  Identities=20%  Similarity=0.292  Sum_probs=37.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGV  203 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi  203 (375)
                      ...++|+++|.+|||||||+|+|.+.           . ......|.++.+..  .+.+... -.+.++||||.
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~   85 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG-----------L-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ   85 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS-----------S-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC-----------C-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence            44689999999999999999999861           1 11122232333332  3333321 14789999995

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.24  E-value=1e-06  Score=76.10  Aligned_cols=101  Identities=14%  Similarity=0.035  Sum_probs=66.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHH-HHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNK-WVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~-~~~~~~   98 (375)
                      ..||+.. ........+..+|++++|+|+..+.+...  ..+..+     ..+.|+++|+||+|+.+.....+ ..++..
T Consensus        58 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~  136 (189)
T 4dsu_A           58 DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR  136 (189)
T ss_dssp             ECCCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH
T ss_pred             ECCCcHH-HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH
Confidence            4677643 22233456789999999999976532111  111111     24689999999999985433222 222333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+..
T Consensus       137 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          137 SYGIPFIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             HHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999998877654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.23  E-value=1.1e-06  Score=76.90  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=38.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+.          .......+..|++.....+.+... -.+.++||||..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   86 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDD----------TFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE   86 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC----------CCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence            45689999999999999999999861          011122233344443334444321 247899999953

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.23  E-value=9.8e-07  Score=77.89  Aligned_cols=60  Identities=17%  Similarity=0.247  Sum_probs=35.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeee--EEEEEccC-CcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI--AGFKIAHR-PSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~--~~~~i~~~-~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+.           . ......|.++.+.  ..+.+... -.+.++||||..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   85 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIEN-----------K-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE   85 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC-----------C-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence            45689999999999999999999861           1 1111223233222  22333321 258899999963

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.23  E-value=2.1e-06  Score=73.85  Aligned_cols=25  Identities=36%  Similarity=0.320  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|.+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Confidence            3568999999999999999999996

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.23  E-value=2.1e-06  Score=74.17  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|.+
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            4468999999999999999999996

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.23  E-value=1.6e-06  Score=76.99  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=38.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc--CCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH--RPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~--~~~~~liDTPGi~  204 (375)
                      ...++|+++|.+|||||||+|+|.+.           .  .....+.++.+...+.+..  .-.+.++||||..
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   65 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG-----------Q--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE   65 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS-----------C--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC-----------C--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence            45679999999999999999999971           1  1122233444433444443  2358999999974

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.23  E-value=6.4e-07  Score=75.72  Aligned_cols=99  Identities=17%  Similarity=0.063  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..|||.. ........++.+|++|+|+|+..+.+...  ..+..+    ....|+++|.||+|+.+...  .++..++..
T Consensus        61 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~  139 (170)
T 1r2q_A           61 DTAGQER-YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD  139 (170)
T ss_dssp             EECCSGG-GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             eCCCcHH-hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH
Confidence            3677632 22234466889999999999976532111  112222    23678899999999975321  233344444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ..+.+++.+||+++.|++++++++.+.+
T Consensus       140 ~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          140 DNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5677889999999999999999987654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.23  E-value=1.1e-06  Score=88.70  Aligned_cols=89  Identities=18%  Similarity=0.134  Sum_probs=62.4

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCC----CchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-CCcEEEEecCC
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSS----AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSC-KQDYIAINAHS  111 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~----~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-g~~vi~iSa~~  111 (375)
                      ++....++.+|++|+|+|+..+.+.    ....+.+...++|+++|+||+|+.+......  +.+.+. ..+++.+||++
T Consensus       304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAkt  381 (476)
T 3gee_A          304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALN  381 (476)
T ss_dssp             ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTT
T ss_pred             HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECC
Confidence            4455678999999999999887664    2222222245789999999999987654322  222221 25789999999


Q ss_pred             ccCHHHHHHHHHHHHh
Q 017187          112 RSSVQKLLELVELKLK  127 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~  127 (375)
                      +.|+++|++++.+.+.
T Consensus       382 g~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          382 GDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TBSHHHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999987764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.23  E-value=2.3e-06  Score=72.53  Aligned_cols=102  Identities=17%  Similarity=0.022  Sum_probs=64.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+...........++.+|++++|+|+..+.+-..  ..+..+   .  .+.|+++|+||+|+.+...  .+...++.
T Consensus        57 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  136 (169)
T 3q85_A           57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA  136 (169)
T ss_dssp             CCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             ECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH
Confidence            4677643221122234778999999999976432111  122222   1  3789999999999974321  22333344


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+.+++.+||+++.|++++++.+.+.+..
T Consensus       137 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          137 GTLSCKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             HHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            4557789999999999999999998876643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.23  E-value=1.6e-06  Score=73.06  Aligned_cols=55  Identities=20%  Similarity=0.301  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ++|+++|.+|||||||+|+|.+.           ......+..|..  ...+.. ....+.++||||..
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~-----------~~~~~~~t~~~~--~~~~~~-~~~~~~i~Dt~G~~   55 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLG-----------EIVTTIPTIGFN--VETVEY-KNISFTVWDVGGQD   55 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH-----------CSSCCCCCSSCC--EEEEEC-SSCEEEEEECCCCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC-----------CcCcccCcCcee--EEEEEE-CCEEEEEEEcCCCh
Confidence            47999999999999999999861           111111211211  112222 23468999999974

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.23  E-value=2.2e-06  Score=74.54  Aligned_cols=101  Identities=16%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH--HHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL--NKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~   98 (375)
                      ..||+.. ........+..+|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+....  ....++..
T Consensus        71 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  149 (196)
T 3tkl_A           71 DTAGQER-FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD  149 (196)
T ss_dssp             EECCSGG-GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred             ECCCcHh-hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence            4677632 22234467889999999999986432111  111111    236899999999999865322  22333334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       150 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          150 SLGIPFLETSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             HTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            557789999999999999999999887765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.22  E-value=1.3e-06  Score=73.88  Aligned_cols=101  Identities=11%  Similarity=0.024  Sum_probs=67.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh-HHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI-LNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~   99 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+... .+...++.+.
T Consensus        58 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  136 (170)
T 1g16_A           58 DTAGQER-FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE  136 (170)
T ss_dssp             CCTTGGG-TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHH
T ss_pred             eCCCChh-hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHH
Confidence            5777632 11223466789999999999976533111  112221    14689999999999954322 2223333344


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+.+++.+||+++.|++++++++.+.+.+
T Consensus       137 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          137 LGIPFIESSAKNDDNVNEIFFTLAKLIQE  165 (170)
T ss_dssp             HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999887754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.22  E-value=1.1e-06  Score=74.96  Aligned_cols=100  Identities=18%  Similarity=0.091  Sum_probs=66.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++++|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+...  .....++..
T Consensus        69 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  147 (179)
T 2y8e_A           69 DTAGQER-FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK  147 (179)
T ss_dssp             EECCSGG-GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             ECCCcHH-HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH
Confidence            4577532 22233466889999999999976532111  112222    24688999999999975422  233344444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..+.+++.+||+++.|++++++++.+.+.
T Consensus       148 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          148 ELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            55678999999999999999999876553

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.22  E-value=1.3e-06  Score=74.78  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            4578999999999999999999996

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.22  E-value=6.7e-07  Score=77.20  Aligned_cols=88  Identities=13%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-c----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEec
Q 017187           35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-Q----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINA  109 (375)
Q Consensus        35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa  109 (375)
                      ++.+....+..+|++++|+|+..+.+.....+.. +    ..++|+++|+||+||.+...     ++.+..+.+++.+||
T Consensus        73 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA  147 (172)
T 2gj8_A           73 GIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSA  147 (172)
T ss_dssp             HHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCT
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeC
Confidence            3455667789999999999998776644332222 1    23689999999999854311     011123457889999


Q ss_pred             CCccCHHHHHHHHHHHHh
Q 017187          110 HSRSSVQKLLELVELKLK  127 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~  127 (375)
                      +++.|++++++.+.+.+.
T Consensus       148 ~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          148 RTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTCTTHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999877654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.22  E-value=1.3e-06  Score=87.00  Aligned_cols=108  Identities=20%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEc
Q 017187            9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNK   81 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK   81 (375)
                      +|+++...........    +-..|||.. ..+.+...+..+|++|+|+|++.+...........   ...+|+++|+||
T Consensus        88 rGiTi~~~~~~~~~~~~~~~iiDtpGh~~-f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK  166 (434)
T 1zun_B           88 QGITIDVAYRYFSTAKRKFIIADTPGHEQ-YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINK  166 (434)
T ss_dssp             --CCCCCEEEEEECSSEEEEEEECCCSGG-GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             CCcEEEeeeeEeecCCceEEEEECCChHH-HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            4565443333333222    345799964 34556677899999999999987653322111111   233458999999


Q ss_pred             CCCCCh--hh----HHHHHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187           82 KDLANP--NI----LNKWVRHFDSCK-----QDYIAINAHSRSSVQK  117 (375)
Q Consensus        82 ~DL~~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~~~gvk~  117 (375)
                      +|+.+.  +.    .+++.++++..+     .+++++||+++.|+++
T Consensus       167 ~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          167 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             CcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            999862  22    223444444455     4688999999999876

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.22  E-value=1.3e-06  Score=74.89  Aligned_cols=101  Identities=14%  Similarity=0.015  Sum_probs=68.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..|||.. ........++.+|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+...  .+...++.+
T Consensus        67 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~  145 (181)
T 2efe_B           67 DTAGQER-YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ  145 (181)
T ss_dssp             ECCCSGG-GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred             eCCCChh-hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHH
Confidence            4778642 22233466889999999999976533111  112222    13678999999999975432  234444444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+..
T Consensus       146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          146 ENGLFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             HTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            567789999999999999999998776543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.21  E-value=2.5e-06  Score=71.92  Aligned_cols=87  Identities=10%  Similarity=0.013  Sum_probs=60.1

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhC-CCcEEEEec
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSC-KQDYIAINA  109 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~-g~~vi~iSa  109 (375)
                      ...+.++|++++|+|+..+.+..+  ..+..+     ..+.|+++|+||+|+.+...  .+...++.+.. +.+++.+||
T Consensus        69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (167)
T 1c1y_A           69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence            456789999999999986532111  112222     24789999999999975322  22233333333 578999999


Q ss_pred             CCccCHHHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVELKL  126 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l  126 (375)
                      +++.|++++++++.+.+
T Consensus       149 ~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          149 KSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987664

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.21  E-value=1.6e-06  Score=75.68  Aligned_cols=59  Identities=24%  Similarity=0.410  Sum_probs=38.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccccc--CCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATV--GPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v--~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ....+|+|+|.+|||||||+|+|.+           .....+  .+..|.+..  .+. .....+.++||||...
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~-----------~~~~~~~~~~t~~~~~~--~~~-~~~~~~~i~Dt~G~~~   75 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKP-----------AQSSSKHITATVGYNVE--TFE-KGRVAFTVFDMGGAKK   75 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSC-----------CC----CCCCCSSEEEE--EEE-ETTEEEEEEEECCSGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCcccccccccceeEE--EEE-eCCEEEEEEECCCCHh
Confidence            5678999999999999999999996           122222  344444332  222 2223588999999743

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.21  E-value=3.7e-07  Score=90.89  Aligned_cols=64  Identities=25%  Similarity=0.305  Sum_probs=40.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--EccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~~~~~~~liDTPGi~~~~  207 (375)
                      ....+|+|+|.+|||||||+|+|.+           ...+.++..+|+|.+.....  +.....+.++||||.....
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~-----------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~   97 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVG-----------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG   97 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC------------------------CCCCEEEEEETTTEEEEEEECSSTTCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHc-----------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc
Confidence            4568999999999999999999996           23456678899998876433  3333368999999997643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.21  E-value=2.1e-06  Score=74.78  Aligned_cols=59  Identities=19%  Similarity=0.232  Sum_probs=37.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~  204 (375)
                      ...++|+|+|.+|||||||+|+|.+.          .......+..|.+..  .+.. ....+.++||||..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~--~~~~-~~~~~~l~Dt~G~~   78 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASG----------QFNEDMIPTVGFNMR--KITK-GNVTIKLWDIGGQP   78 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS----------CCCCSCCCCCSEEEE--EEEE-TTEEEEEEEECCSH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcC----------CCCCccCCCCceeEE--EEEe-CCEEEEEEECCCCH
Confidence            45789999999999999999999961          011122233333322  2222 22358899999964

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.21  E-value=7.8e-07  Score=75.33  Aligned_cols=100  Identities=13%  Similarity=0.007  Sum_probs=64.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc---c---CCCCEEEEEEcCCCCChhhH--HHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ---L---SAKRRVIALNKKDLANPNIL--NKWVRH   96 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~---~---~~kp~IiVlNK~DL~~~~~~--~~~~~~   96 (375)
                      ..||+.. ........++.+|++++|+|+..+.+..  ...+..+   .   .+.|+++|+||+|+.+....  .....+
T Consensus        57 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~  135 (172)
T 2erx_A           57 DTTGSHQ-FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL  135 (172)
T ss_dssp             ECCSCSS-CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             ECCCchh-hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH
Confidence            4677632 1123345678999999999998653221  1122222   1   46899999999999754221  122223


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ....+.+++.+|++++.|++++++++.+.+.
T Consensus       136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          136 ARTWKCAFMETSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence            3344678899999999999999999877653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.20  E-value=3e-06  Score=73.00  Aligned_cols=25  Identities=48%  Similarity=0.535  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999999996

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.20  E-value=1.6e-06  Score=75.66  Aligned_cols=62  Identities=19%  Similarity=0.197  Sum_probs=38.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.           ... ...+..|++.....+.+... -.+.++||||...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   82 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDK-----------RFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES   82 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHS-----------CCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC-----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence            44689999999999999999999971           111 11122233333333434321 2478999999654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.20  E-value=1.6e-06  Score=74.43  Aligned_cols=61  Identities=16%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|.+.+           .......+..|.+.. ..+.+... -.+.++||||...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~   66 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLT-----------GSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD   66 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHH-----------SCCCCCSSCSSSEEE-EEEEETTEEEEEEEEECSSSCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh-----------CCCCCcCCCcceeEE-EEEEECCEEEEEEEEECCCCch
Confidence            3568999999999999999999997           111222233332221 12333321 1377899999754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.20  E-value=1.2e-06  Score=76.96  Aligned_cols=101  Identities=12%  Similarity=-0.019  Sum_probs=67.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+...  .+...++.+
T Consensus        63 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  141 (203)
T 1zbd_A           63 DTAGLER-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD  141 (203)
T ss_dssp             EECCSGG-GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH
T ss_pred             ECCCchh-hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence            4677732 22334566899999999999976532111  111111    14789999999999976422  222333333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       142 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          142 HLGFEFFEASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             HHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             HCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999988776543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.20  E-value=1.3e-06  Score=76.14  Aligned_cols=102  Identities=12%  Similarity=0.008  Sum_probs=67.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc---cCCCCEEEEEEcCCCCChhh-HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ---LSAKRRVIALNKKDLANPNI-LNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~---~~~kp~IiVlNK~DL~~~~~-~~~~~~~   96 (375)
                      -..||+... .......++.+|++|+|+|+..+.+..+  ..+   .+.   ..+.|+++|+||+|+.+... .+...++
T Consensus        61 ~Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  139 (199)
T 2gf0_A           61 TDTTGSHQF-PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV  139 (199)
T ss_dssp             EECCGGGSC-HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred             EeCCChHHh-HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH
Confidence            346776421 1233456789999999999976432111  111   121   13689999999999986432 2222333


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ....+..++.+||+++.|++++++++.+.+..
T Consensus       140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          140 AQEWKCAFMETSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred             HHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            33446788999999999999999999877643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.19  E-value=2.6e-06  Score=75.06  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|.+
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHh
Confidence            4678999999999999999999997

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.19  E-value=1.8e-06  Score=73.22  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||||||||+|+|.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999999985

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.19  E-value=1.6e-06  Score=76.52  Aligned_cols=59  Identities=20%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ....+|+++|.+|||||||+|+|.+           .+.....+..|.+..  .+.+.+ -.+.++||||...
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~-----------~~~~~~~~t~~~~~~--~~~~~~-~~l~i~Dt~G~~~   81 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD-----------DRLGQHVPTLHPTSE--ELTIAG-MTFTTFDLGGHIQ   81 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC-----------C------CCCCCSCE--EEEETT-EEEEEEEECC---
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCCCCceeE--EEEECC-EEEEEEECCCcHh
Confidence            4567999999999999999999986           122233334444432  233333 3588999999654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.19  E-value=3.3e-06  Score=72.12  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=59.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-------C--CcEEEEec
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSC-------K--QDYIAINA  109 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-------g--~~vi~iSa  109 (375)
                      ..+..+|++|+|+|+..+....... +... ..+.|+++|+||+|+.+.. .......+...       +  .+++.+||
T Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            3467899999999998754332211 2222 3578999999999998642 12222222211       1  36889999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +++.|++++++++.+.+..
T Consensus       153 ~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          153 KTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             SSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhh
Confidence            9999999999998877654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.19  E-value=2.2e-06  Score=74.79  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            4678999999999999999999996

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.19  E-value=1.8e-06  Score=73.47  Aligned_cols=103  Identities=15%  Similarity=-0.084  Sum_probs=62.5

Q ss_pred             cccchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187           26 NWFPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVR   95 (375)
Q Consensus        26 ~wfpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~   95 (375)
                      -..||+.....+.+ ...+..+|++++|+|+..+.+-.+  ..+..+     ..++|+++|+||+|+.+...  .+....
T Consensus        57 ~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~  136 (175)
T 2nzj_A           57 VDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA  136 (175)
T ss_dssp             ECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             EecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH
Confidence            34788754211222 345678999999999976532111  111111     13689999999999975422  222223


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +....+.+++.+||+++.|++++++++.+.+..
T Consensus       137 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          137 CAVVFDCKFIETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             HHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            333446789999999999999999999877654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.19  E-value=2.5e-06  Score=72.10  Aligned_cols=101  Identities=15%  Similarity=0.000  Sum_probs=58.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+.. ........+..+|++++|+|+..+.+-.+  ..+..+     ..+.|+++|+||+|+.+...  .+....+.
T Consensus        55 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  133 (166)
T 3q72_A           55 DIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA  133 (166)
T ss_dssp             ECC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH
T ss_pred             ECCCCcc-chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH
Confidence            4677643 22233456789999999999986532111  111111     24689999999999985432  12222333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ...+.+++.+||+++.|++++++++.+.+..
T Consensus       134 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          134 VVFDCKFIETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             HHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence            3456789999999999999999999877643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.19  E-value=1e-06  Score=76.64  Aligned_cols=59  Identities=24%  Similarity=0.366  Sum_probs=38.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+           .......+..|.+..  .+... ...+.++||||...
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~~   78 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL-----------GDVVTTVPTVGVNLE--TLQYK-NISFEVWDLGGQTG   78 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC-----------SCCEEECSSTTCCEE--EEEET-TEEEEEEEECCSSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc-----------CCCCCcCCCCceEEE--EEEEC-CEEEEEEECCCCHh
Confidence            4678999999999999999999975           111222233333322  22232 33688999999754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.19  E-value=2.5e-06  Score=74.36  Aligned_cols=101  Identities=13%  Similarity=-0.006  Sum_probs=67.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+. +........++.+|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+...  .+....+.+
T Consensus        78 Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  156 (191)
T 3dz8_A           78 DTAGQE-RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE  156 (191)
T ss_dssp             CHHHHH-HCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             eCCChH-HHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence            468864 333445567899999999999976422111  111111    14789999999999964321  122222333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+..++.+||+++.|++++++++.+.+.+
T Consensus       157 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          157 QLGFDFFEASAKENISVRQAFERLVDAICD  186 (191)
T ss_dssp             HHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999998877654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.18  E-value=9.3e-07  Score=77.64  Aligned_cols=102  Identities=15%  Similarity=0.027  Sum_probs=59.7

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c----CCCCEEEEEEcCCCCC-hhh--HHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L----SAKRRVIALNKKDLAN-PNI--LNKW   93 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~----~~kp~IiVlNK~DL~~-~~~--~~~~   93 (375)
                      -..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+   .    .+.|+++|+||+|+.+ ...  .+..
T Consensus        78 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~  156 (208)
T 2yc2_C           78 LDTAGSDL-YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA  156 (208)
T ss_dssp             EETTTTHH-HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHH
T ss_pred             EECCCcHH-HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHH
Confidence            44788843 22334456789999999999976543111  112222   1    4789999999999976 321  2344


Q ss_pred             HHHHhhCCCcEEEEecCC-ccCHHHHHHHHHHHHhh
Q 017187           94 VRHFDSCKQDYIAINAHS-RSSVQKLLELVELKLKE  128 (375)
Q Consensus        94 ~~~~~~~g~~vi~iSa~~-~~gvk~Ll~~L~~~l~~  128 (375)
                      .++.+..+..++.+||++ +.|++++++++.+.+.+
T Consensus       157 ~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          157 QDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             HHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence            444555677899999999 99999999988776543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.18  E-value=2e-06  Score=74.81  Aligned_cols=61  Identities=25%  Similarity=0.375  Sum_probs=38.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|+|.+..         .......+..|.+.  ..+.+. +..+.++||||...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~---------~~~~~~~~t~~~~~--~~~~~~-~~~~~l~Dt~G~~~   79 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN---------AQSQNILPTIGFSI--EKFKSS-SLSFTVFDMSGQGR   79 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG---------GCCSSCCCCSSEEE--EEEECS-SCEEEEEEECCSTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC---------CCCCCcCCccceeE--EEEEEC-CEEEEEEECCCCHH
Confidence            457899999999999999999998611         00122222223222  123333 34689999999654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.18  E-value=3e-06  Score=73.56  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHc
Confidence            3458999999999999999999996

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.18  E-value=1.3e-06  Score=75.49  Aligned_cols=101  Identities=13%  Similarity=0.018  Sum_probs=68.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+...  ..+..++..
T Consensus        65 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  143 (186)
T 2bme_A           65 DTAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ  143 (186)
T ss_dssp             EECCSGG-GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             eCCCcHH-HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence            4677632 22334566889999999999976533211  111111    24689999999999964321  233444444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       144 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          144 ENELMFLETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            567789999999999999999998776654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.18  E-value=9.8e-07  Score=78.61  Aligned_cols=64  Identities=22%  Similarity=0.208  Sum_probs=41.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC--cEEEEEcCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP--SIYVLDTPGVLVP  206 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~--~~~liDTPGi~~~  206 (375)
                      ...++|+|+|.+|||||||+|+|.+.          .......+..|++.....+....+.  .+.++||||....
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDG----------RFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK   74 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTC----------STTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcC----------CCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence            45789999999999999999999861          1123334445555544433332221  3789999997543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.18  E-value=8.2e-07  Score=77.54  Aligned_cols=61  Identities=13%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGV  203 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi  203 (375)
                      ...++|+|+|.+|||||||+|+|.+..          ......+..|++.....+.+.... .+.++||||.
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~----------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   82 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT----------FTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ   82 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT----------TCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC----------CCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence            456899999999999999999999711          011111223444444444343322 4889999994

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.17  E-value=1.8e-06  Score=75.08  Aligned_cols=101  Identities=16%  Similarity=0.086  Sum_probs=65.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHh---hc--cCCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQ---PQ--LSAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~---~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      -..||+...........++++|++|+|+|+..+.+...  ..+.   +.  ..+.|+++|+||+|+.+...  .+...++
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  153 (189)
T 1z06_A           74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF  153 (189)
T ss_dssp             EECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHH
Confidence            34788754321344567899999999999976433211  1111   21  24689999999999975422  2222333


Q ss_pred             HhhCCCcEEEEecCCc---cCHHHHHHHHHHHH
Q 017187           97 FDSCKQDYIAINAHSR---SSVQKLLELVELKL  126 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~---~gvk~Ll~~L~~~l  126 (375)
                      ....+..++.+|++++   .+++++++++.+.+
T Consensus       154 ~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          154 ADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             HHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred             HHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence            3355678999999999   89999988876554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.17  E-value=1.8e-06  Score=72.99  Aligned_cols=100  Identities=15%  Similarity=0.005  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+    ....|+++|.||+|+.+...  .+....+..
T Consensus        61 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~  139 (170)
T 1z0j_A           61 DTAGLER-FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD  139 (170)
T ss_dssp             EECCSGG-GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             cCCCchh-hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHH
Confidence            4677632 22233466789999999999976543221  111111    24578899999999975322  222333334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..+.+++.+||+++.|++++++++.+.+.
T Consensus       140 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          140 SIHAIFVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            55678999999999999999999877653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.17  E-value=2.3e-06  Score=74.26  Aligned_cols=102  Identities=14%  Similarity=0.056  Sum_probs=63.9

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhcc--CCCCEEEEEEcCCCCChhh-HHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PG---LQPQL--SAKRRVIALNKKDLANPNI-LNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~~--~~kp~IiVlNK~DL~~~~~-~~~~~~~~   97 (375)
                      -..||+.. ........+..+|++++|+|+..+.+..+  ..   +....  .+.|+++|+||+|+.+... .+...++.
T Consensus        74 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  152 (190)
T 3con_A           74 LDTAGQEE-YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA  152 (190)
T ss_dssp             EECCC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH
T ss_pred             EECCChHH-HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH
Confidence            34788742 22334567899999999999976532111  11   11111  3689999999999976322 22333334


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.+.+++.+|++++.|++++++++.+.+.+
T Consensus       153 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          153 KSYGIPFIETSAKTRQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             HHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4456789999999999999999999877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.17  E-value=6.2e-07  Score=77.34  Aligned_cols=60  Identities=13%  Similarity=0.211  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ..++|+++|.+|||||||+|+|.+.            .......|+++.+..  .+.+.+. -.+.++||||...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED------------AFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER   69 (183)
T ss_dssp             EEEEEEEECCCCC----------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC------------CCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence            4689999999999999999999861            111122233444433  2333221 2478999999643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.17  E-value=4.1e-06  Score=74.16  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|++.+
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            5679999999999999999999996

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.17  E-value=4.1e-06  Score=70.12  Aligned_cols=100  Identities=15%  Similarity=0.057  Sum_probs=65.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhhH-HHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNIL-NKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~~-~~~~~~~~   98 (375)
                      ..||+.. ........+..+|.+++|+|+..+.+..+  ..+..+   .  .+.|+++|+||+|+.+.... +...++.+
T Consensus        57 D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  135 (166)
T 2ce2_X           57 DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR  135 (166)
T ss_dssp             ECCCCSS-CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred             ECCCchh-hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH
Confidence            3667532 11223356789999999999876432111  111111   1  27899999999999864322 23333334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +.+.+++.+|++++.|++++++++.+.+.
T Consensus       136 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          136 SYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999887654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.17  E-value=2.7e-06  Score=72.75  Aligned_cols=102  Identities=13%  Similarity=-0.094  Sum_probs=62.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-----CCCCEEEEEEcCCCCChhh---HHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-----SAKRRVIALNKKDLANPNI---LNK   92 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-----~~kp~IiVlNK~DL~~~~~---~~~   92 (375)
                      -..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+   .     .+.|+++|+||+|+.+...   .+.
T Consensus        63 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~  141 (182)
T 1ky3_A           63 WDTAGQER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS  141 (182)
T ss_dssp             ECCC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH
T ss_pred             EECCCChH-hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH
Confidence            34788643 22233456789999999999976533211  111111   1     5689999999999964321   222


Q ss_pred             HHHHHh-hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           93 WVRHFD-SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        93 ~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..++.+ ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          142 AQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            223332 245688999999999999999998776543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.16  E-value=3.7e-06  Score=73.64  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4678999999999999999999997

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.16  E-value=2.3e-06  Score=73.16  Aligned_cols=102  Identities=15%  Similarity=0.015  Sum_probs=66.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhcc------CCCC-EEEEEEcCCCCChhh--HHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQL------SAKR-RVIALNKKDLANPNI--LNKWV   94 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~~------~~kp-~IiVlNK~DL~~~~~--~~~~~   94 (375)
                      -..||+.. ........++++|++|+|+|+..+.+..+  ..+..+.      ...| +++|+||+|+.+...  .+...
T Consensus        61 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~  139 (178)
T 2hxs_A           61 WDIGGQTI-GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHL  139 (178)
T ss_dssp             EECTTCCT-TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred             EECCCCcc-ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHH
Confidence            34677632 12223456889999999999986543211  1111111      2566 789999999975321  22333


Q ss_pred             HHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           95 RHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        95 ~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.+..+.+++.+||+++.|++++++++.+.+.+
T Consensus       140 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          140 RFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            3334456789999999999999999999877654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.16  E-value=2.5e-06  Score=76.14  Aligned_cols=102  Identities=13%  Similarity=0.003  Sum_probs=59.6

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhH---------
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNIL---------   90 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~---------   90 (375)
                      -..||+.. ........+..+|++|+|+|+..+.+-.+   ..+..+   ..+.|+++|+||+|+.+....         
T Consensus        87 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  165 (214)
T 2j1l_A           87 WDTAGQDD-YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGL  165 (214)
T ss_dssp             EEC----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTC
T ss_pred             EECCCchh-hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccccc
Confidence            34788642 22223456789999999999976533211   011111   247899999999999865322         


Q ss_pred             -----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           91 -----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        91 -----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                           ++..++.+..+. .++.+||+++.|++++++.+.+.+.+
T Consensus       166 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             CCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence                 122233334455 78999999999999999998877644

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.16  E-value=2.8e-06  Score=83.91  Aligned_cols=120  Identities=14%  Similarity=0.101  Sum_probs=77.2

Q ss_pred             HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEE
Q 017187            8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALN   80 (375)
Q Consensus         8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlN   80 (375)
                      .+|+++...........    +-..|||.. ..+.+...+..+|++|+|+|++.+...........  ..+.| +++|+|
T Consensus        58 ~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviN  136 (405)
T 2c78_A           58 ARGITINTAHVEYETAKRHYSHVDCPGHAD-YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMN  136 (405)
T ss_dssp             HHTCCCSCEEEEEECSSCEEEEEECCCSGG-GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             HcCCCEEeeeeEeccCCeEEEEEECCChHH-HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEE
Confidence            45665554444443322    445899953 45667788999999999999987654322222222  34677 789999


Q ss_pred             cCCCCC-hhhHH----HHHHHHhhCC-----CcEEEEecCCccC------------------HHHHHHHHHHHHhh
Q 017187           81 KKDLAN-PNILN----KWVRHFDSCK-----QDYIAINAHSRSS------------------VQKLLELVELKLKE  128 (375)
Q Consensus        81 K~DL~~-~~~~~----~~~~~~~~~g-----~~vi~iSa~~~~g------------------vk~Ll~~L~~~l~~  128 (375)
                      |+|+.+ ++..+    +..+++...+     .+++++||+++.+                  +.+|++.+...++.
T Consensus       137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          137 KVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             CccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            999984 32221    2333443333     5789999998876                  77888888776653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.16  E-value=2e-06  Score=72.57  Aligned_cols=100  Identities=11%  Similarity=-0.014  Sum_probs=67.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   99 (375)
                      ..||+.. ........++.+|++++|+|+..+.+...  ..+..+   ..+.|+++|+||+|+.+...  .+...++.+.
T Consensus        60 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  138 (168)
T 1z2a_A           60 DTAGQEE-FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR  138 (168)
T ss_dssp             CCTTGGG-TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             cCCCcHh-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence            5677632 11223466789999999999976532211  111222   24789999999999975321  2333344445


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+.+++.+|++++.|++++++++.+.+.
T Consensus       139 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          139 LKLRFYRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             HTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            5778999999999999999999877653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.16  E-value=2.9e-06  Score=74.02  Aligned_cols=101  Identities=12%  Similarity=-0.004  Sum_probs=66.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+...  .+...++.+
T Consensus        76 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~  154 (191)
T 2a5j_A           76 DTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR  154 (191)
T ss_dssp             CCTTGGG-TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ECCCchh-hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH
Confidence            4677632 11223466789999999999976432211  111122    23689999999999975321  223333334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+..++.+||+++.|++++++++.+.+.+
T Consensus       155 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          155 EHGLIFMETSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             HHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            556789999999999999999998776644

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.15  E-value=5.5e-06  Score=74.63  Aligned_cols=89  Identities=18%  Similarity=0.090  Sum_probs=60.7

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCch----hHhhcc---CCCCEEEEEEcCCCCChhhH-----HHHHHHHhhCC--CcEE
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHP----GLQPQL---SAKRRVIALNKKDLANPNIL-----NKWVRHFDSCK--QDYI  105 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~----~l~~~~---~~kp~IiVlNK~DL~~~~~~-----~~~~~~~~~~g--~~vi  105 (375)
                      ......+|++|+|+|+..+.+....    .+..+.   .+.|+++|+||+|+.+....     ....++....+  ..++
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            3456788999999999877553321    122221   37899999999999864322     12223333344  6789


Q ss_pred             EEecCCccCHHHHHHHHHHHHhh
Q 017187          106 AINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       106 ~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+||+++.|++++++++.+.+..
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHH
Confidence            99999999999999998877654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.15  E-value=3.6e-06  Score=73.50  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhc
Confidence            4578999999999999999999997

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.15  E-value=1.8e-06  Score=75.67  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=68.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc--cCCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ--LSAKRRVIALNKKDLANPNI--LNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~   96 (375)
                      -..||+..  .......+..+|++|+|+|+..+.+..+  ..+   .+.  ..+.|+++|+||+|+.+...  .+...++
T Consensus        81 ~Dt~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  158 (196)
T 2atv_A           81 LDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL  158 (196)
T ss_dssp             EECCCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EECCCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            34677754  2334567889999999999986533211  111   121  24789999999999975321  2223333


Q ss_pred             HhhCCCcEEEEecCCcc-CHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRS-SVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~-gvk~Ll~~L~~~l~~  128 (375)
                      .+..+.+++.+||+++. |++++++++.+.+.+
T Consensus       159 ~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          159 ATELACAFYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             HHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence            33446788999999999 999999998876644

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.15  E-value=1.5e-06  Score=76.48  Aligned_cols=101  Identities=12%  Similarity=-0.010  Sum_probs=64.7

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCCh-------hh-HH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANP-------NI-LN   91 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~-------~~-~~   91 (375)
                      -..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+||.+.       .. .+
T Consensus        82 ~Dt~G~~~-~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~  160 (199)
T 2p5s_A           82 WDTAGQER-FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGH  160 (199)
T ss_dssp             EECTTCTT-CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHH
T ss_pred             EECCCCcc-hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHH
Confidence            34677642 22334567889999999999976533221  111111    246899999999999631       11 11


Q ss_pred             HHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        92 ~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ...++....+.+++.+||+++.|++++++++.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          161 FGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            222333345678899999999999999999877653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.15  E-value=3e-06  Score=73.86  Aligned_cols=99  Identities=9%  Similarity=0.048  Sum_probs=63.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhh-----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNI-----------   89 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~-----------   89 (375)
                      ..||+... .......++++|++|+|+|+..+.+..+   ..+..+   ..+.|+++|+||+|+.+...           
T Consensus        72 D~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  150 (194)
T 2atx_A           72 DTAGQEDY-DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK  150 (194)
T ss_dssp             CCCCSSSS-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred             ECCCCcch-hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCc
Confidence            46666321 1122345789999999999976533211   111222   34789999999999976421           


Q ss_pred             ---HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187           90 ---LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        90 ---~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                         .++..++.+..+. .++.+||+++.|++++++++.+.+
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          151 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence               1222233333455 789999999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.15  E-value=2.9e-06  Score=74.41  Aligned_cols=60  Identities=20%  Similarity=0.138  Sum_probs=35.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|.|.+.           .  .....++||.+...  +.+... -.+.++||||...
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   80 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTN-----------G--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE   80 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC---------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC-----------C--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence            56789999999999999999999961           1  11222334433222  222221 1366999999854

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.15  E-value=8.3e-07  Score=89.34  Aligned_cols=90  Identities=12%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHH
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ  116 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk  116 (375)
                      ++....+..+|++|+|+|+..+.+.....+.+....+|+++|+||+|+.+....... +.+ ..+.+++.+|++++.|++
T Consensus       295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~~-~~~~~~i~iSAktg~Gi~  372 (462)
T 3geh_A          295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EYP-ENITQIVHTAAAQKQGID  372 (462)
T ss_dssp             ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CCC-TTCCCEEEEBTTTTBSHH
T ss_pred             HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HHh-ccCCcEEEEECCCCCCHH
Confidence            445567889999999999988776555445444556899999999999876443211 001 124578999999999999


Q ss_pred             HHHHHHHHHHhh
Q 017187          117 KLLELVELKLKE  128 (375)
Q Consensus       117 ~Ll~~L~~~l~~  128 (375)
                      +|++.+.+.+..
T Consensus       373 eL~~~i~~~~~~  384 (462)
T 3geh_A          373 SLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999877643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.15  E-value=2.1e-06  Score=74.60  Aligned_cols=89  Identities=15%  Similarity=0.050  Sum_probs=61.8

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ...++.+|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+...  .+...++.+..+.+++.+||++
T Consensus        89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  168 (189)
T 2gf9_A           89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE  168 (189)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence            356789999999999976532211  111222    14789999999999975322  2233333344567899999999


Q ss_pred             ccCHHHHHHHHHHHHhh
Q 017187          112 RSSVQKLLELVELKLKE  128 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~  128 (375)
                      +.|++++++++.+.+.+
T Consensus       169 g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          169 NINVKQVFERLVDVICE  185 (189)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999877654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.15  E-value=3e-06  Score=75.43  Aligned_cols=101  Identities=12%  Similarity=-0.005  Sum_probs=65.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc----cCCCCEEEEEEcCCCCChhh-HH-HHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ----LSAKRRVIALNKKDLANPNI-LN-KWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~----~~~kp~IiVlNK~DL~~~~~-~~-~~~~~~~   98 (375)
                      ..||+.... ......+..+|++|+|+|+..+.+..+.  .+..+    ..++|+++|+||+|+.+... .. ....+..
T Consensus        67 Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  145 (218)
T 4djt_A           67 DTAGQEKKA-VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLK  145 (218)
T ss_dssp             EECSGGGTS-CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTT
T ss_pred             ecCCchhhc-hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence            456653221 1223457889999999999865432211  11111    23589999999999986522 22 2333444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+..
T Consensus       146 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          146 GKNYEYFEISAKTAHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             TCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred             HcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            567789999999999999999999877654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.14  E-value=2.6e-06  Score=72.83  Aligned_cols=101  Identities=13%  Similarity=0.045  Sum_probs=66.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   99 (375)
                      ..||+... .......+..+|++|+|+|+..+.+...  ..+..+   ..+.|+++|+||+|+.+...  ......+...
T Consensus        64 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  142 (181)
T 3tw8_B           64 DTAGQERF-RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQ  142 (181)
T ss_dssp             EETTGGGC-SSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cCCCchhh-hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHH
Confidence            46775321 1122345789999999999987532211  011111   34689999999999875432  2233333344


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+.+++.+||+++.|++++++++.+.+..
T Consensus       143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          143 MGIQLFETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999998877654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.14  E-value=4.7e-06  Score=86.31  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=72.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCC
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHFD-SCK  101 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g  101 (375)
                      +-.-|||... ...+...+..+|.+|+|+|+..+.+...... ... ..+.|+++|+||+|+.+... ....+.+. ..+
T Consensus        77 liDTPGh~dF-~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~-~~v~~el~~~lg  154 (600)
T 2ywe_A           77 LIDTPGHVDF-SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV-DRVKKQIEEVLG  154 (600)
T ss_dssp             EECCCCSGGG-HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHTSC
T ss_pred             EEECCCcHhH-HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH-HHHHHHHHHhhC
Confidence            4468999653 3456677899999999999987654322211 111 45789999999999976432 22222232 223


Q ss_pred             C---cEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187          102 Q---DYIAINAHSRSSVQKLLELVELKLKEV  129 (375)
Q Consensus       102 ~---~vi~iSa~~~~gvk~Ll~~L~~~l~~~  129 (375)
                      .   +++++||+++.|+++|++++.+.++..
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            3   589999999999999999998888653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.14  E-value=2.9e-06  Score=73.92  Aligned_cols=100  Identities=13%  Similarity=-0.021  Sum_probs=66.5

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDS   99 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   99 (375)
                      .||+.. ........++.+|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+||.+...  ......+...
T Consensus        81 t~G~~~-~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  159 (193)
T 2oil_A           81 TAGLER-YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN  159 (193)
T ss_dssp             ESCCCT-TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCchh-hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH
Confidence            566522 11223456789999999999976533211  112222    24678999999999975321  2333344445


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+..++.+||+++.|++++++++.+.+.+
T Consensus       160 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          160 NGLLFLETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            67789999999999999999998776643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.14  E-value=2.6e-06  Score=76.48  Aligned_cols=62  Identities=19%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.           ... ...+..|++.....+.+... -.+.++||||...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   74 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN-----------EFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER   74 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC-----------CCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC-----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence            34589999999999999999999971           111 11122222222223333321 2478999999654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.14  E-value=3e-06  Score=72.38  Aligned_cols=101  Identities=14%  Similarity=0.007  Sum_probs=66.7

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+.. ........++.+|++++|+|+..+.+..+  ..+..+     ..+.|+++|+||+|+.+...  ......+.
T Consensus        63 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  141 (181)
T 2fn4_A           63 DTAGQEE-FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG  141 (181)
T ss_dssp             ECCCTTT-TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             ECCCchh-hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence            3666532 11223456789999999999976432111  111121     24689999999999975322  12233333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ...+..++.+||+++.|++++++++.+.+.+
T Consensus       142 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          142 ASHHVAYFEASAKLRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             HHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            3557789999999999999999999877754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.13  E-value=2.3e-06  Score=74.76  Aligned_cols=101  Identities=15%  Similarity=-0.002  Sum_probs=68.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~   98 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+..  ..+...++.+
T Consensus        78 Dt~G~~~-~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~  156 (192)
T 2fg5_A           78 DTAGQER-FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE  156 (192)
T ss_dssp             EECCSGG-GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             cCCCchh-hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence            4677632 22233467889999999999976533211  111111    1368999999999997432  2334445555


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.+.+++.+||+++.|++++++++.+.+.+
T Consensus       157 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          157 SIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             TTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             HcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            667789999999999999999999876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.12  E-value=2.3e-06  Score=76.21  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=39.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ....+++++|.+|||||||+|+|.+..         .....++..|+++...      ....+.++||||...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~---------~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~   67 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS---------VRPTVVSQEPLSAADY------DGSGVTLVDFPGHVK   67 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS---------CCCBCCCSSCEEETTG------GGSSCEEEECCCCGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC---------CCCeeeecCceEEEEe------eCceEEEEECCCcHH
Confidence            456899999999999999999999710         0112223344444432      223589999999854

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.12  E-value=2e-06  Score=73.86  Aligned_cols=99  Identities=13%  Similarity=0.017  Sum_probs=63.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhH----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNIL----------   90 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~----------   90 (375)
                      ..|||.. ........++++|++++|+|+..+.+..+   ..+..+   ..+.|+++|+||+|+.+....          
T Consensus        62 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v  140 (182)
T 3bwd_D           62 DTAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPI  140 (182)
T ss_dssp             CCCC-CT-TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCC
T ss_pred             ECCCChh-hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCC
Confidence            4666532 11122345788999999999976533211   111111   247899999999999754321          


Q ss_pred             --HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187           91 --NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        91 --~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                        +...++.+..+. +++.+||+++.|++++++.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          141 TTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence              222233333454 789999999999999999987654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.12  E-value=2.6e-06  Score=73.36  Aligned_cols=102  Identities=11%  Similarity=-0.012  Sum_probs=58.8

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      -..||+.. ........++++|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+||.+...  .+...++.
T Consensus        62 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  140 (183)
T 2fu5_C           62 WDTAGQER-FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA  140 (183)
T ss_dssp             EEC----------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred             EcCCCChh-hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHH
Confidence            34788742 22223355789999999999987533111  111111    13689999999999975321  22333344


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+.+++.+||+++.|++++++++.+.+.+
T Consensus       141 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          141 LDYGIKFMETSAKANINVENAFFTLARDIKA  171 (183)
T ss_dssp             HHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4556789999999999999999998776654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.11  E-value=9.5e-07  Score=79.07  Aligned_cols=101  Identities=15%  Similarity=0.032  Sum_probs=66.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCK  101 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g  101 (375)
                      ..||+.. ........+.++|++|+|+|+..+.+..+  ..+..+   ..+.|+++|+||+||.+.........+.+..+
T Consensus        70 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  148 (221)
T 3gj0_A           70 DTAGQEK-FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN  148 (221)
T ss_dssp             EECSGGG-TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHT
T ss_pred             eCCChHH-HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcC
Confidence            3567532 11123356779999999999986533211  111122   34789999999999976543323223333456


Q ss_pred             CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          102 QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..++.+||+++.|++++++++.+.+..
T Consensus       149 ~~~~~~Sa~~~~gi~~l~~~l~~~l~~  175 (221)
T 3gj0_A          149 LQYYDISAKSNYNFEKPFLWLARKLIG  175 (221)
T ss_dssp             CEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999988776543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.11  E-value=3.9e-06  Score=73.98  Aligned_cols=101  Identities=19%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........+..+|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+...  .+...++..
T Consensus        63 Dt~G~~~-~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  141 (206)
T 2bcg_Y           63 DTAGQER-FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD  141 (206)
T ss_dssp             CCTTTTT-TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred             eCCChHH-HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence            4667532 11122345789999999999976533211  111121    24688999999999986422  223333334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       142 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          142 ANKMPFLETSALDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             HTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            567789999999999999999999877654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.11  E-value=1.3e-06  Score=73.77  Aligned_cols=99  Identities=11%  Similarity=0.013  Sum_probs=65.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCCh----hhH-HHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANP----NIL-NKWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~----~~~-~~~~~   95 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+.    ... +...+
T Consensus        58 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~  136 (170)
T 1ek0_A           58 DTAGQER-FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEK  136 (170)
T ss_dssp             EECCSGG-GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHH
T ss_pred             ECCCChh-hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHH
Confidence            4677632 22234567889999999999987533211  112222    246889999999999753    111 22223


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +....+.+++.+||+++.|++++++++.+.+
T Consensus       137 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3334567899999999999999999887554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.11  E-value=2e-06  Score=75.77  Aligned_cols=61  Identities=21%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|.|.+..            ......|++|.+..  .+.+... -.+.++||||...
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   84 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQ------------GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD   84 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEE------------CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhcc------------CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence            457899999999999999999997510            11112334443332  2333321 1367789999853

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.11  E-value=3.4e-06  Score=74.49  Aligned_cols=25  Identities=20%  Similarity=0.444  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|.|.+
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhh
Confidence            4468999999999999999999986

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.10  E-value=2e-05  Score=76.42  Aligned_cols=87  Identities=14%  Similarity=0.140  Sum_probs=63.4

Q ss_pred             HhhhcCeEEEEEeCCCCCCCC-c---hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187           42 RLKISDLVIEVRDSRIPLSSA-H---PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS  114 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~-~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g  114 (375)
                      ....+|.+++|+|+..+.... .   ..+..+   ..++|+++|+||+|+.+........+++...+.+++.+||+++.|
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  322 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG  322 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence            345699999999987543211 1   112222   237999999999999887655555555555667889999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 017187          115 VQKLLELVELKLKE  128 (375)
Q Consensus       115 vk~Ll~~L~~~l~~  128 (375)
                      ++++++++.+.+..
T Consensus       323 i~~l~~~i~~~l~~  336 (357)
T 2e87_A          323 IDLVKEEIIKTLRP  336 (357)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.10  E-value=3.5e-06  Score=74.22  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHh
Confidence            3467999999999999999999997

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.10  E-value=3.4e-06  Score=74.35  Aligned_cols=102  Identities=12%  Similarity=-0.002  Sum_probs=69.2

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      -..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+...  ..+..++.
T Consensus        79 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  157 (200)
T 2o52_A           79 WDTAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFA  157 (200)
T ss_dssp             ECCTTHHH-HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             EcCCCcHh-HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHH
Confidence            45788742 22224456889999999999976533211  112222    24689999999999964322  23344444


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+..++.+||+++.|++++++++.+.+..
T Consensus       158 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          158 QENELMFLETSALTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             HHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5567789999999999999999998776644

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.10  E-value=4.8e-06  Score=88.25  Aligned_cols=51  Identities=18%  Similarity=0.196  Sum_probs=32.1

Q ss_pred             EecCCccCHHHHHHHHHHHHh---hhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          107 INAHSRSSVQKLLELVELKLK---EVI--SREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l~---~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++..+.|+++++..+.+...   ..+  ....-.+|+|+|.+|+|||||+|+|.+
T Consensus        18 ~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g   73 (772)
T 3zvr_A           18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   73 (772)
T ss_dssp             -------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHS
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            344455666666666555443   322  123456999999999999999999997

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.10  E-value=2.6e-06  Score=72.13  Aligned_cols=100  Identities=14%  Similarity=-0.054  Sum_probs=64.8

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+... .......++++|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+...  .+...++.+
T Consensus        61 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  139 (170)
T 1z08_A           61 DTAGQERF-HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE  139 (170)
T ss_dssp             ECCCC--------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             ECCCcHhh-hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence            57887432 2223345789999999999876532111  111111    24689999999999975321  223334444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..+.+++.+||+++.|++++++++.+.+.
T Consensus       140 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          140 SVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             HTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            55778999999999999999999877654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.10  E-value=2.9e-06  Score=74.88  Aligned_cols=98  Identities=14%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~   99 (375)
                      ..||+... .......++.+|++++|+|+..+.+-.  ...+.++     ..+.|+++|+||+|+......++..+++..
T Consensus        75 Dt~G~~~~-~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  153 (198)
T 1f6b_A           75 DLGGHIQA-RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL  153 (198)
T ss_dssp             EECC-----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred             ECCCcHhh-HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCc
Confidence            35776421 112234678999999999998653211  1122222     246899999999999753223333444321


Q ss_pred             -----------------CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187          100 -----------------CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       100 -----------------~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                                       .+.+++.+||+++.|++++++++.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence                             23468899999999999999988643

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.09  E-value=4.6e-06  Score=82.17  Aligned_cols=103  Identities=17%  Similarity=0.063  Sum_probs=68.9

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCC-hhhH----HHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLAN-PNIL----NKWVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~-~~~~----~~~~~~   96 (375)
                      +-..|||.. ..+.+...+..+|++|+|+|++.............  ..+.| +++|+||+|+.+ ++..    ++..++
T Consensus        70 iiDtpG~~~-f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~  148 (397)
T 1d2e_A           70 HTDCPGHAD-YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIREL  148 (397)
T ss_dssp             EEECSSHHH-HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHH
T ss_pred             EEECCChHH-HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHH
Confidence            445899954 45567778899999999999987643322111111  34677 689999999985 3221    233344


Q ss_pred             HhhCC-----CcEEEEecCCccC----------HHHHHHHHHHHHhh
Q 017187           97 FDSCK-----QDYIAINAHSRSS----------VQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g-----~~vi~iSa~~~~g----------vk~Ll~~L~~~l~~  128 (375)
                      +++.+     .+++++||+++.+          +.+|++.+.+.++.
T Consensus       149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence            44333     4789999988653          88888888877654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.09  E-value=3.3e-06  Score=74.87  Aligned_cols=101  Identities=18%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhc-------cCCCCEEEEEEcCCCCChhhHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQ-------LSAKRRVIALNKKDLANPNILNKWV   94 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~   94 (375)
                      +-..|||..-...-....+..+|++|+|+|+..+..+...   .+.+.       ..+.|+++|+||+||.+........
T Consensus        58 i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  137 (214)
T 2fh5_B           58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQ  137 (214)
T ss_dssp             EEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHH
T ss_pred             EEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHH
Confidence            3458898643222344568999999999998752111111   11111       1357999999999998653322222


Q ss_pred             HHHh-------------------------------------hC--CCcEEEEecCCc------cCHHHHHHHHHHH
Q 017187           95 RHFD-------------------------------------SC--KQDYIAINAHSR------SSVQKLLELVELK  125 (375)
Q Consensus        95 ~~~~-------------------------------------~~--g~~vi~iSa~~~------~gvk~Ll~~L~~~  125 (375)
                      +.+.                                     ..  +..++.+||+++      .|++++.+++.+.
T Consensus       138 ~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          138 QQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            1111                                     00  345788999999      9999999988754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.09  E-value=2.4e-06  Score=74.84  Aligned_cols=97  Identities=16%  Similarity=0.076  Sum_probs=63.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS   99 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~   99 (375)
                      ..|||... .......++.+|++|+|+|+..+.+-.+  ..+...     ..+.|+++|+||+|+.+....++..+++..
T Consensus        73 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  151 (190)
T 1m2o_B           73 DLGGHIQA-RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGL  151 (190)
T ss_dssp             ECCCSGGG-TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTC
T ss_pred             ECCCCHHH-HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCC
Confidence            36776431 1122345789999999999987533211  112222     256899999999999764333444444432


Q ss_pred             ------------CCCcEEEEecCCccCHHHHHHHHHH
Q 017187          100 ------------CKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus       100 ------------~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                                  .+.+++.+||+++.|++++++++.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          152 LNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             SSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             ccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence                        2346889999999999999988754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.08  E-value=1.8e-06  Score=73.67  Aligned_cols=79  Identities=18%  Similarity=0.190  Sum_probs=54.3

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChh----hHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPN----ILNKWVRHFDSCKQDYIAINAHSRSSVQKL  118 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L  118 (375)
                      .++|++++|+|+..... ....+... ..++|+++|.||+|+....    ..+.+.+   ..+.+++.+||+++.|++++
T Consensus        80 ~~~~~~i~v~D~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~~v~~l  155 (165)
T 2wji_A           80 EKPDLVVNIVDATALER-NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEEL  155 (165)
T ss_dssp             HCCSEEEEEEETTCHHH-HHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHHH
T ss_pred             CCCCEEEEEecCCchhH-hHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH---HhCCCEEEEEcCCCCCHHHH
Confidence            58999999999875211 11122222 2478999999999986432    1223332   33567899999999999999


Q ss_pred             HHHHHHHH
Q 017187          119 LELVELKL  126 (375)
Q Consensus       119 l~~L~~~l  126 (375)
                      ++++.+.+
T Consensus       156 ~~~l~~~~  163 (165)
T 2wji_A          156 KKAISIAV  163 (165)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99987654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.08  E-value=4.3e-06  Score=71.37  Aligned_cols=100  Identities=13%  Similarity=-0.020  Sum_probs=66.3

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-----CCCCEEEEEEcCCCCChhh-HHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-----SAKRRVIALNKKDLANPNI-LNKWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-----~~kp~IiVlNK~DL~~~~~-~~~~~~   95 (375)
                      ..||+.. ........++.+|++++|+|+..+.+..+  ..+..+   .     .+.|+++|+||+|+.+... .+...+
T Consensus        62 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~  140 (177)
T 1wms_A           62 DTAGQER-FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA  140 (177)
T ss_dssp             ECCCCGG-GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred             eCCCchh-hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHH
Confidence            4677632 22333456789999999999986532211  111111   1     5679999999999974322 223333


Q ss_pred             HHh-hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           96 HFD-SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        96 ~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +.+ ..+.+++.+||+++.|++++++++.+.+.
T Consensus       141 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          141 WCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  173 (177)
T ss_dssp             HHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            333 34568999999999999999999877654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.08  E-value=2.9e-06  Score=74.35  Aligned_cols=25  Identities=16%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            5678999999999999999999985

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.08  E-value=4.6e-06  Score=73.44  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhh----ccCCCCEEEEEEcCCCCChhhH----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQP----QLSAKRRVIALNKKDLANPNIL----------   90 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~----~~~~kp~IiVlNK~DL~~~~~~----------   90 (375)
                      ..||+... .......++++|++|+|+|+..+.+-.+  ..+..    ...+.|+++|+||+|+.+....          
T Consensus        79 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  157 (201)
T 2gco_A           79 DTAGQEDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQE  157 (201)
T ss_dssp             CCCCSGGG-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCC
T ss_pred             ECCCchhH-HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccC
Confidence            46776321 1112245789999999999876432211  01111    1247899999999999865321          


Q ss_pred             ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187           91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                          +...++.+..+. .++.+||+++.|++++++++.+.+
T Consensus       158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence                122233334455 788999999999999999987765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.08  E-value=7.4e-06  Score=70.13  Aligned_cols=96  Identities=13%  Similarity=-0.053  Sum_probs=63.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhcc----CCCCEEEEEEcCCCCC---hh-hHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQL----SAKRRVIALNKKDLAN---PN-ILNKW   93 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~~----~~kp~IiVlNK~DL~~---~~-~~~~~   93 (375)
                      ..||+..      ...++++|++|+|+|+..+.+..+.     .+....    .+.|+++|.||+|+.+   .. ..++.
T Consensus        60 Dt~G~~~------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~  133 (178)
T 2iwr_A           60 EEAGAPD------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA  133 (178)
T ss_dssp             ECSSSCC------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH
T ss_pred             ECCCCch------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH
Confidence            3677643      3567899999999999865432211     122221    3679999999999942   11 12222


Q ss_pred             HHHHhh-CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           94 VRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        94 ~~~~~~-~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .++... .+.+++.+||+++.|++++++.+.+.+..
T Consensus       134 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence            233332 25678999999999999999998776643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.07  E-value=3.5e-06  Score=77.79  Aligned_cols=82  Identities=13%  Similarity=-0.018  Sum_probs=57.5

Q ss_pred             hcCeEEEEEeCCCC--CCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-CCCcEEEEecCCccC
Q 017187           45 ISDLVIEVRDSRIP--LSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS-CKQDYIAINAHSRSS  114 (375)
Q Consensus        45 ~~DlVI~VvDar~p--~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~g~~vi~iSa~~~~g  114 (375)
                      ++|++|+|+|+..+  .+-.+  ..+..+     ..+.|+++|.||+||.+....++..++... .+..++.+||+++.|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g  241 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN  241 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence            69999999999876  32211  111221     246899999999999765444444444433 367889999999999


Q ss_pred             HHHHHHHHHHHH
Q 017187          115 VQKLLELVELKL  126 (375)
Q Consensus       115 vk~Ll~~L~~~l  126 (375)
                      ++++++++.+.+
T Consensus       242 v~elf~~l~~~l  253 (255)
T 3c5h_A          242 VDLAFSTLVQLI  253 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.07  E-value=5.3e-06  Score=72.31  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|.|.+
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHh
Confidence            5678999999999999999999997

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.07  E-value=4.5e-06  Score=71.71  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.+|||||||+|+|.+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            467999999999999999999986

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.07  E-value=4.1e-06  Score=72.53  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|.|.+
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999997

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.07  E-value=1.1e-06  Score=83.55  Aligned_cols=88  Identities=20%  Similarity=0.218  Sum_probs=64.7

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchhHhhcc--CCCCEEEEEEcCCCCC-hhhHHHHHHHHhh-CCC-cEEEEecCCccC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQL--SAKRRVIALNKKDLAN-PNILNKWVRHFDS-CKQ-DYIAINAHSRSS  114 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~--~~kp~IiVlNK~DL~~-~~~~~~~~~~~~~-~g~-~vi~iSa~~~~g  114 (375)
                      ...++.+|++++|+|+.. ++.....+.+..  .++|+++|+||+|+.. ........+.+.+ .+. .++++|++++.+
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~  161 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  161 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence            345789999999999976 554444444432  3789999999999987 4444455554433 354 689999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 017187          115 VQKLLELVELKLKE  128 (375)
Q Consensus       115 vk~Ll~~L~~~l~~  128 (375)
                      ++.+++.+...+++
T Consensus       162 v~~l~~~i~~~l~~  175 (301)
T 1ega_A          162 VDTIAAIVRKHLPE  175 (301)
T ss_dssp             HHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCc
Confidence            99999998876653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.07  E-value=3.2e-06  Score=73.81  Aligned_cols=101  Identities=13%  Similarity=0.005  Sum_probs=65.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH----hhccCCCCEEEEEEcCCCCChh----hHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL----QPQLSAKRRVIALNKKDLANPN----ILNKWVRH   96 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l----~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~   96 (375)
                      ..||+.. ........+.++|++|+|+|+..+.+..+  ..+    .....+.|+++|+||+||.+..    ..+...++
T Consensus        77 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  155 (194)
T 3reg_A           77 DTAGQEE-YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDL  155 (194)
T ss_dssp             EECCSGG-GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHH
T ss_pred             ECCCcHH-HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHH
Confidence            4566532 11223346789999999999986533221  111    1113468999999999997531    12233333


Q ss_pred             HhhCCCc-EEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQD-YIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~-vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .+..+.. ++.+||+++.|++++++.+.+.+..
T Consensus       156 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          156 CQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             HHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence            3344555 8999999999999999998877643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.07  E-value=2.6e-06  Score=75.81  Aligned_cols=25  Identities=16%  Similarity=0.380  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|.+
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            4568999999999999999999996

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.06  E-value=1.9e-06  Score=83.38  Aligned_cols=103  Identities=18%  Similarity=0.259  Sum_probs=68.3

Q ss_pred             ccccchhHHHH------HHHHHHHhhhcCeEEEEEeCCCC-----CCCCch---hHhhc---cCCCCEEEEEEcCCCCCh
Q 017187           25 INWFPGHMAAA------TRAIKHRLKISDLVIEVRDSRIP-----LSSAHP---GLQPQ---LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        25 ~~wfpgHm~k~------~~~i~~~l~~~DlVI~VvDar~p-----~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~   87 (375)
                      +-..||+...+      ..+..+.++++|++|+|+|+...     +.....   ++..+   ...+|+++|+||+|+.+.
T Consensus       210 l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          210 MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             EEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             EecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence            34578865421      13445567889999999999642     111111   12222   247899999999999865


Q ss_pred             hh-HHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           88 NI-LNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        88 ~~-~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .. .+.+.+.+. ...+++.+||+++.|+++|++++.+.+.+
T Consensus       290 ~e~~~~l~~~l~-~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          290 AENLEAFKEKLT-DDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             HHHHHHHHHHCC-SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh-cCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            32 334444442 12568899999999999999999887754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.06  E-value=4.9e-06  Score=73.00  Aligned_cols=26  Identities=15%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....++|+++|.+|||||||+|.+.+
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHh
Confidence            35678999999999999999998886

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.06  E-value=4.6e-06  Score=84.29  Aligned_cols=92  Identities=20%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC----chhHhhc------cCCCCEEEEEEcCCCCCh--hhHH-
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA----HPGLQPQ------LSAKRRVIALNKKDLANP--NILN-   91 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~----~~~l~~~------~~~kp~IiVlNK~DL~~~--~~~~-   91 (375)
                      +-.-||| .+..+.+...+..+|++|+|+|++.+.+..    ..+..+.      ...+|+|+|+||+|+.+.  ...+ 
T Consensus       115 iiDTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~  193 (483)
T 3p26_A          115 IVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE  193 (483)
T ss_dssp             EECCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHH
T ss_pred             EEECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHH
Confidence            4458999 445667778899999999999998753221    1222111      234679999999999862  2222 


Q ss_pred             ---HHHHHHhhC-----CCcEEEEecCCccCHHH
Q 017187           92 ---KWVRHFDSC-----KQDYIAINAHSRSSVQK  117 (375)
Q Consensus        92 ---~~~~~~~~~-----g~~vi~iSa~~~~gvk~  117 (375)
                         .+.+++...     +.+++++||+++.|+.+
T Consensus       194 i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          194 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence               222333222     34679999999998863

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.06  E-value=4.7e-06  Score=83.26  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhh-hcccccc----------ccc--------ccccccCCCCCeeeeeEEEEEc-cC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPV----------QEK--------TKRATVGPLPGVTQDIAGFKIA-HR  192 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~----------~~k--------~~~~~v~~~pg~T~~~~~~~i~-~~  192 (375)
                      ...++++++|.+|+|||||+|.|+.. +.+....          .++        .........+|+|.+.....+. .+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            45689999999999999999999651 1111000          000        0011122346889887643332 23


Q ss_pred             CcEEEEEcCCCC
Q 017187          193 PSIYVLDTPGVL  204 (375)
Q Consensus       193 ~~~~liDTPGi~  204 (375)
                      ..+.++||||..
T Consensus        95 ~~~~iiDTPGh~  106 (439)
T 3j2k_7           95 KHFTILDAPGHK  106 (439)
T ss_pred             eEEEEEECCChH
Confidence            368999999964

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.05  E-value=3.1e-06  Score=72.71  Aligned_cols=101  Identities=10%  Similarity=-0.000  Sum_probs=65.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhH----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNIL----------   90 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~----------   90 (375)
                      ..||+... .......+..+|++|+|+|+..+.+..+.   .+..+   ..+.|+++|+||+|+.+....          
T Consensus        59 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  137 (186)
T 1mh1_A           59 DTAGQEDY-DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  137 (186)
T ss_dssp             CCCCSGGG-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             ECCCCHhH-HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccc
Confidence            46777321 11223457899999999999765332111   11111   237899999999999754211          


Q ss_pred             ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                          +...++.+..+. +++.+||+++.|++++++.+.+.+.+
T Consensus       138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence                122233334455 78999999999999999998877643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.05  E-value=1.4e-06  Score=76.43  Aligned_cols=25  Identities=44%  Similarity=0.468  Sum_probs=7.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~   42 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTS   42 (208)
T ss_dssp             EEEEEEEEC----------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHh
Confidence            3457999999999999999999996

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.31  E-value=5.7e-07  Score=79.41  Aligned_cols=98  Identities=11%  Similarity=0.045  Sum_probs=63.1

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhh-c---cCCCCEEEEEEcCCCCChhhH----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQP-Q---LSAKRRVIALNKKDLANPNIL----------   90 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~-~---~~~kp~IiVlNK~DL~~~~~~----------   90 (375)
                      ..||+.. ........++++|++|+|+|+..+.+..+.  .+.. +   ..+.|+++|+||+|+.+....          
T Consensus        84 Dt~G~~~-~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  162 (204)
T 3th5_A           84 DTAGQED-YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  162 (204)
Confidence            5777632 223344567899999999999776443321  1211 1   236899999999999754211          


Q ss_pred             ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHH
Q 017187           91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                          +...++.+..+. +++.+||+++.|++++++.+.+.
T Consensus       163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence                112222223344 67889999999999998887643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.05  E-value=2.4e-06  Score=75.85  Aligned_cols=101  Identities=17%  Similarity=0.073  Sum_probs=66.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+|+.+...  .+...++..
T Consensus        81 Dt~G~~~-~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~  159 (201)
T 2ew1_A           81 DTAGQER-FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE  159 (201)
T ss_dssp             EECCSGG-GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred             ECCCcHH-HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence            4677632 22234456889999999999976532211  112221    24678999999999974321  222333333


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ..+..++.+||+++.|++++++++.+.+.+
T Consensus       160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          160 AQDMYYLETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             HHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            456788999999999999999998776654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.04  E-value=1.2e-05  Score=78.46  Aligned_cols=104  Identities=24%  Similarity=0.198  Sum_probs=70.6

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-------hHhhc-cCCCCEEEEEEcCCCCChhhHH--HHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-------GLQPQ-LSAKRRVIALNKKDLANPNILN--KWV   94 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-------~l~~~-~~~kp~IiVlNK~DL~~~~~~~--~~~   94 (375)
                      +...|.++..+.+.+.+.+..+|++++|+|+..+.+....       .+..+ ..++|+|+|+||+|+.+....+  ...
T Consensus       237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~  316 (364)
T 2qtf_A          237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLV  316 (364)
T ss_dssp             CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHH
Confidence            4445777777778788889999999999999766411111       12222 2578999999999998643111  111


Q ss_pred             -HHHhhC---CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           95 -RHFDSC---KQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        95 -~~~~~~---g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                       ++....   +.+++++|++++.|+++|++.+.+.+..
T Consensus       317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence             111121   2357899999999999999999887755

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.04  E-value=5.3e-06  Score=72.85  Aligned_cols=101  Identities=14%  Similarity=0.015  Sum_probs=66.0

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-----CCCCEEEEEEcCCCCChhh-HHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-----SAKRRVIALNKKDLANPNI-LNKWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-----~~kp~IiVlNK~DL~~~~~-~~~~~~   95 (375)
                      ..|||... .......++.+|++|+|+|+..+.+..+  ..+..+   .     .+.|+++|+||+|+.+... .+...+
T Consensus        63 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  141 (207)
T 1vg8_A           63 DTAGQERF-QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA  141 (207)
T ss_dssp             EECSSGGG-SCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHH
T ss_pred             eCCCcHHH-HHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHH
Confidence            36776321 1112345789999999999976533211  112221   1     4689999999999985432 223333


Q ss_pred             HHh-hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFD-SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +.. ..+.+++.+||+++.|++++++++.+.+.+
T Consensus       142 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          142 WCYSKNNIPYFETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             HHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            333 346689999999999999999998877654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.03  E-value=7.1e-06  Score=83.88  Aligned_cols=78  Identities=19%  Similarity=0.127  Sum_probs=51.9

Q ss_pred             hcccccceEEeeCCC----cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcC
Q 017187            9 KGLGLGEMGFTKGGG----NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKK   82 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~----~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~   82 (375)
                      +|+++..........    ++-.-|||.. ....+...+..+|.+|+|+|+..+.......+.+.  ..++|+++|+||+
T Consensus        66 ~GiTi~~~~~~~~~~~~~i~liDTPG~~d-f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~  144 (528)
T 3tr5_A           66 RGISVTTSVMQFPYKDYLINLLDTPGHAD-FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKM  144 (528)
T ss_dssp             HCCSSSSSEEEEEETTEEEEEECCCCSTT-CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CCeeEEEeEEEEEeCCEEEEEEECCCchh-HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            555554444333322    2345799843 33456778999999999999988665443333332  3578999999999


Q ss_pred             CCCCh
Q 017187           83 DLANP   87 (375)
Q Consensus        83 DL~~~   87 (375)
                      |+...
T Consensus       145 Dl~~~  149 (528)
T 3tr5_A          145 DRDTR  149 (528)
T ss_dssp             TSCCS
T ss_pred             CCccc
Confidence            99754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.03  E-value=1.4e-05  Score=78.19  Aligned_cols=117  Identities=15%  Similarity=0.092  Sum_probs=75.3

Q ss_pred             hcccccceEEeeCC--Cc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCE-EEEEE-
Q 017187            9 KGLGLGEMGFTKGG--GN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRR-VIALN-   80 (375)
Q Consensus         9 ~~~~~g~~~~~~~~--~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~-IiVlN-   80 (375)
                      +|++++........  .+  +-.-|||. +..+.+...+..+|++|+|+| +.....+.......  ..+.|. |+|+| 
T Consensus        44 ~giTi~~~~~~~~~~~~~i~iiDtPGh~-~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNN  121 (370)
T 2elf_A           44 KGTSSDITMYNNDKEGRNMVFVDAHSYP-KTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTR  121 (370)
T ss_dssp             EEEESSSEEEEECSSSSEEEEEECTTTT-TCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCEEEEeeEEEEecCCeEEEEEECCChH-HHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEe
Confidence            45544444433333  22  34589994 445667778899999999999 64432211111111  346787 99999 


Q ss_pred             cCCCCChhhHH----HHHHHHhhC---CCcEEE--EecCC---ccCHHHHHHHHHHHHhh
Q 017187           81 KKDLANPNILN----KWVRHFDSC---KQDYIA--INAHS---RSSVQKLLELVELKLKE  128 (375)
Q Consensus        81 K~DL~~~~~~~----~~~~~~~~~---g~~vi~--iSa~~---~~gvk~Ll~~L~~~l~~  128 (375)
                      |+|+ +++..+    +..+++...   ..++++  +||++   +.|+++|++.+.+.++.
T Consensus       122 K~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          122 SDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             GGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             ccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            9999 654332    333444332   257899  99999   99999999998887764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.03  E-value=9.5e-06  Score=70.62  Aligned_cols=26  Identities=38%  Similarity=0.493  Sum_probs=23.7

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....++|+++|.+|||||||+|.+.+
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            45679999999999999999999986

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.02  E-value=5.2e-06  Score=72.88  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.||||||||+|.+.+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            3457999999999999999999986

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.02  E-value=6.8e-06  Score=73.25  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc
Confidence            4568999999999999999999996

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.01  E-value=6.6e-06  Score=72.79  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhc
Confidence            4467999999999999999999997

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.01  E-value=4.7e-07  Score=79.74  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=38.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+|+|.+|||||||+|+|.+.            .......|++|.+..  .+.+... -.+.++||||...
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   94 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADD------------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER   94 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCC------------CCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC------------CCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence            34689999999999999999999861            111111223333332  3333321 1478999999654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.01  E-value=4.8e-06  Score=72.97  Aligned_cols=88  Identities=10%  Similarity=0.030  Sum_probs=59.4

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChh--------------hHHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPN--------------ILNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~--------------~~~~~~~~~~~~  100 (375)
                      ..+.++|++|+|+|+..+.+..+.   .+..+   ..+.|+++|+||+|+.+..              ..+....+.+..
T Consensus        87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  166 (201)
T 2q3h_A           87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI  166 (201)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence            457899999999999765332211   11111   3478999999999997531              111222222233


Q ss_pred             CC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          101 KQ-DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       101 g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +. .++.+||+++.|++++++++.+.+.+
T Consensus       167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          167 KAASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            54 78999999999999999998776654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.01  E-value=9e-06  Score=71.92  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|.|.+
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            3568999999999999999999996

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.00  E-value=1.6e-05  Score=69.94  Aligned_cols=88  Identities=18%  Similarity=0.075  Sum_probs=61.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCC--chhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSA--HPGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~--~~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..+..+|++|+|+|+..+.+-.  ...+..+   .  .+.|+++|.||+||.+...  .++..++.+..+..++.+||++
T Consensus        92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~  171 (195)
T 3cbq_A           92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  171 (195)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence            4578899999999997653211  1122222   1  3789999999999975321  2233333334567889999999


Q ss_pred             ccCHHHHHHHHHHHHhh
Q 017187          112 RSSVQKLLELVELKLKE  128 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~  128 (375)
                      +.|++++++.+.+.+..
T Consensus       172 ~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          172 HHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             TBSHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999998877654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.00  E-value=8.2e-06  Score=79.14  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+|+|+|.+|||||||+|+|.+
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            3899999999999999999997

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.00  E-value=2.9e-06  Score=84.82  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      +-..|.|+|.+|+|||||+|.|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3456889999999999999999973

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.99  E-value=1.1e-05  Score=71.80  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|.|.+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999997

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.99  E-value=7.4e-06  Score=78.65  Aligned_cols=101  Identities=18%  Similarity=0.057  Sum_probs=66.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -..|||.. ........++.+|++|+|+|+..+.+...  ..+...     ..+.|+++|+||+|+.+....+++...+.
T Consensus       214 ~Dt~G~~~-~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~  292 (329)
T 3o47_A          214 WDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG  292 (329)
T ss_dssp             EECC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             EECCCCHh-HHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhc
Confidence            45778632 22234456889999999999976533211  122222     24789999999999987654445554442


Q ss_pred             h-----CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 S-----CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~-----~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .     .+..++.+||+++.|++++++.|.+.+.
T Consensus       293 ~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          293 LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             CTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             hhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence            1     2346889999999999999999987664

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.98  E-value=6.8e-06  Score=71.31  Aligned_cols=22  Identities=27%  Similarity=0.603  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||||||||+|.|.+
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999986

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.98  E-value=1.3e-05  Score=77.73  Aligned_cols=86  Identities=13%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhh-----------CCCcEEEEec
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDS-----------CKQDYIAINA  109 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----------~g~~vi~iSa  109 (375)
                      ..+..+|++|+|+|+......  ..+......+|.++|+||+|+.+........+.+.+           .+.+++++||
T Consensus       188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA  265 (355)
T 3p32_A          188 AVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSA  265 (355)
T ss_dssp             HHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred             HHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEc
Confidence            345899999999997543211  122222334699999999999765433322222211           1357999999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +++.|+++|.+++.+.+..
T Consensus       266 ~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          266 VEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.97  E-value=5e-06  Score=73.59  Aligned_cols=88  Identities=10%  Similarity=0.019  Sum_probs=60.4

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhh----------HHHHHHHHhhCCC-c
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNI----------LNKWVRHFDSCKQ-D  103 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~----------~~~~~~~~~~~g~-~  103 (375)
                      ..+.++|++|+|+|+..+.+..+   ..+..+   ..+.|+++|+||+||.+...          .+...++....+. .
T Consensus        76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (212)
T 2j0v_A           76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAA  155 (212)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSE
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCce
Confidence            45789999999999976533211   111111   24789999999999975432          2222233334454 7


Q ss_pred             EEEEecCCccCHHHHHHHHHHHHhh
Q 017187          104 YIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       104 vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.+||+++.|++++++++.+.+..
T Consensus       156 ~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          156 YIECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEccCCCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999998877654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.97  E-value=4.6e-06  Score=77.33  Aligned_cols=83  Identities=19%  Similarity=0.078  Sum_probs=56.6

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHH-HHHHHHhhCCCcEEEEecCCccCHHHHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILN-KWVRHFDSCKQDYIAINAHSRSSVQKLLEL  121 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~-~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~  121 (375)
                      ..+|++++|+|+..+... ...+..+ ..+.|+++|+||+|+....... ...+..+..+.+++++||+++.|++++++.
T Consensus        82 ~~~d~ii~V~D~t~~~~~-~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~  160 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQS-LYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEK  160 (258)
T ss_dssp             SCCSEEEEEEETTSCHHH-HHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHH
T ss_pred             cCCCEEEEEeCCCchhhH-HHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHH
Confidence            689999999999764211 1122222 3478999999999986432211 111122234678999999999999999999


Q ss_pred             HHHHHh
Q 017187          122 VELKLK  127 (375)
Q Consensus       122 L~~~l~  127 (375)
                      +.+.+.
T Consensus       161 i~~~~~  166 (258)
T 3a1s_A          161 IVEYAQ  166 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            877653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.97  E-value=8e-06  Score=72.25  Aligned_cols=100  Identities=15%  Similarity=0.103  Sum_probs=63.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH-hhc---cCCCCEEEEEEcCCCCChhhHHHH-------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL-QPQ---LSAKRRVIALNKKDLANPNILNKW-------   93 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l-~~~---~~~kp~IiVlNK~DL~~~~~~~~~-------   93 (375)
                      ..||+... .......++++|++|+|+|+..+.+-.+  ..+ ..+   ..+.|+++|+||+|+.+.....+.       
T Consensus        79 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  157 (207)
T 2fv8_A           79 DTAGQEDY-DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE  157 (207)
T ss_dssp             ECTTCTTC-TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred             ECCCcHHH-HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccC
Confidence            46776321 1122345789999999999876432111  111 111   247899999999999764322211       


Q ss_pred             -------HHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHh
Q 017187           94 -------VRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        94 -------~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                             .++....+. .++.+||+++.|++++++++.+.+.
T Consensus       158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~  199 (207)
T 2fv8_A          158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL  199 (207)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                   122223344 6889999999999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.97  E-value=4.6e-06  Score=73.81  Aligned_cols=98  Identities=10%  Similarity=0.007  Sum_probs=62.6

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHh-hc---cCCCCEEEEEEcCCCCChhhH----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQ-PQ---LSAKRRVIALNKKDLANPNIL----------   90 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~-~~---~~~kp~IiVlNK~DL~~~~~~----------   90 (375)
                      ..||+.. ........++.+|++|+|+|+..+.+..+.  .+. .+   ..++|+++|+||+|+.+....          
T Consensus        84 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  162 (204)
T 4gzl_A           84 DTAGLED-YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  162 (204)
T ss_dssp             EECCSGG-GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             ECCCchh-hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccc
Confidence            4667622 112223467899999999999865432211  111 11   247899999999999764321          


Q ss_pred             ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHH
Q 017187           91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                          +....+.+..+. +++.+||+++.|++++++++.+.
T Consensus       163 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence                122223333443 58999999999999999988653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.96  E-value=1.6e-05  Score=69.17  Aligned_cols=87  Identities=14%  Similarity=-0.017  Sum_probs=58.8

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCCh----hhHHHHHHHHhhCC-CcEEEEec
Q 017187           42 RLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANP----NILNKWVRHFDSCK-QDYIAINA  109 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~----~~~~~~~~~~~~~g-~~vi~iSa  109 (375)
                      .+..+|++++|+|+..+.+-.+  ..+..+     ..+.|+++|.||+||...    ...+...++....+ ..++.+||
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  161 (184)
T 3ihw_A           82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA  161 (184)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred             eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence            6778999999999986543221  112222     146799999999999421    11222333333444 67899999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +++.|++++++++.+.+.+
T Consensus       162 ~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          162 TYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             TTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999998776644

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.96  E-value=3.9e-06  Score=87.28  Aligned_cols=72  Identities=28%  Similarity=0.400  Sum_probs=43.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhh-hccccccccc--ccccccC----------------CCCCeeeeeEEEEEc-cC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK--TKRATVG----------------PLPGVTQDIAGFKIA-HR  192 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k--~~~~~v~----------------~~pg~T~~~~~~~i~-~~  192 (375)
                      ...++|+++|.+|||||||+|+|++. +.+......+  ......+                ..+|+|.+.....+. ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            55789999999999999999999852 1110000000  0000011                136888877643232 23


Q ss_pred             CcEEEEEcCCCC
Q 017187          193 PSIYVLDTPGVL  204 (375)
Q Consensus       193 ~~~~liDTPGi~  204 (375)
                      ..+.++||||..
T Consensus       245 ~~~~iiDTPG~e  256 (611)
T 3izq_1          245 ANFTIVDAPGHR  256 (611)
T ss_dssp             CEEEEEECCSSS
T ss_pred             ceEEEEECCCCc
Confidence            368999999974

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.95  E-value=1.4e-05  Score=70.15  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=36.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~  205 (375)
                      ..++++++|.+|||||||+|.|.+..          ......+..|++.....+.+.+.. .+.++||||...
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~----------~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   66 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNE----------FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER   66 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSC----------CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCC----------CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence            35789999999999999999999710          111112222332222233343221 356799999653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.94  E-value=1.2e-05  Score=70.10  Aligned_cols=24  Identities=38%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.+|||||||+|+|.+
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~   40 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAN   40 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            457999999999999999999997

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.94  E-value=4.9e-06  Score=71.31  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|++.+
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999996

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.94  E-value=2.2e-05  Score=86.17  Aligned_cols=102  Identities=13%  Similarity=0.047  Sum_probs=70.3

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCCh-hhH----HHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLANP-NIL----NKWVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~~-~~~----~~~~~~   96 (375)
                      +-.-|||.. ..+.+...+..+|++|+|+|++.+...+.......  ..+.| +|+|+||+|+.+. +..    ++..++
T Consensus       363 IIDTPGHed-F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el  441 (1289)
T 3avx_A          363 HVDCPGHAD-YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL  441 (1289)
T ss_dssp             EEECCCHHH-HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred             EEECCChHH-HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence            445899964 45667778899999999999988655443222222  34677 6899999999853 211    223334


Q ss_pred             HhhCC-----CcEEEEecCCc--------cCHHHHHHHHHHHHh
Q 017187           97 FDSCK-----QDYIAINAHSR--------SSVQKLLELVELKLK  127 (375)
Q Consensus        97 ~~~~g-----~~vi~iSa~~~--------~gvk~Ll~~L~~~l~  127 (375)
                      +...+     .+++++|++++        .|+.+|++.+...++
T Consensus       442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            43333     47899999998        468888888877654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.94  E-value=5.4e-06  Score=74.06  Aligned_cols=88  Identities=13%  Similarity=0.025  Sum_probs=59.9

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~  100 (375)
                      ..+..+|++|+|+|+..+.+..+   ..+..+   ..+.|+++|.||+||.+.              ...+...++.+..
T Consensus        94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  173 (214)
T 3q3j_B           94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL  173 (214)
T ss_dssp             GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence            45789999999999987543221   111111   347899999999999642              1112222333344


Q ss_pred             CC-cEEEEecCCccC-HHHHHHHHHHHHhh
Q 017187          101 KQ-DYIAINAHSRSS-VQKLLELVELKLKE  128 (375)
Q Consensus       101 g~-~vi~iSa~~~~g-vk~Ll~~L~~~l~~  128 (375)
                      +. .++.+||+++.| ++++++.+.+.+..
T Consensus       174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence            66 789999999998 99999998776643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.93  E-value=1.1e-05  Score=71.93  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|.|.+
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhc
Confidence            4568999999999999999999986

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.93  E-value=2.3e-06  Score=79.35  Aligned_cols=80  Identities=24%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~  120 (375)
                      .++|+||+|+|+..+  ..+..+...  ..++|+++|+||+|+.+........+.+ +..+.+++++||+++.|++++++
T Consensus        82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  159 (256)
T 3iby_A           82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ  159 (256)
T ss_dssp             SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred             CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            789999999999763  112222222  3478999999999987543221111112 23467899999999999999988


Q ss_pred             HHHHH
Q 017187          121 LVELK  125 (375)
Q Consensus       121 ~L~~~  125 (375)
                      .+.+.
T Consensus       160 ~i~~~  164 (256)
T 3iby_A          160 SLLHC  164 (256)
T ss_dssp             HHHTC
T ss_pred             HHHhh
Confidence            87543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.93  E-value=6.4e-06  Score=83.24  Aligned_cols=72  Identities=25%  Similarity=0.350  Sum_probs=43.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhh-hccccc----------cccc--------ccccccCCCCCeeeeeEEEEEc-cC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFP----------VQEK--------TKRATVGPLPGVTQDIAGFKIA-HR  192 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~----------~~~k--------~~~~~v~~~pg~T~~~~~~~i~-~~  192 (375)
                      ...++|+++|.+|+|||||+|+|+.. +.+...          ..|+        .........+|+|.+.....+. ..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            56789999999999999999999862 111000          0000        0112334456888877654443 23


Q ss_pred             CcEEEEEcCCCC
Q 017187          193 PSIYVLDTPGVL  204 (375)
Q Consensus       193 ~~~~liDTPGi~  204 (375)
                      ..+.++||||..
T Consensus       111 ~~~~iiDTPG~~  122 (483)
T 3p26_A          111 ANFTIVDAPGHR  122 (483)
T ss_dssp             CEEEEECCCCCG
T ss_pred             ceEEEEECCCcH
Confidence            468999999984

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.93  E-value=3.3e-06  Score=73.25  Aligned_cols=25  Identities=20%  Similarity=0.192  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|.|.+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999998886

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.92  E-value=4.6e-06  Score=74.78  Aligned_cols=102  Identities=14%  Similarity=-0.047  Sum_probs=64.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      -..|||... .......++.+|++|+|+|+..+.+..+  ..+..+    ..+.|+++|+||+||.+...  .+...++.
T Consensus        67 ~Dt~G~~~~-~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  145 (223)
T 3cpj_B           67 WDTAGQERY-RAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFA  145 (223)
T ss_dssp             ECCTTTTTT-TCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHH
T ss_pred             EECCCccch-hhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH
Confidence            346776321 1122345789999999999986543211  111222    23689999999999975321  22333444


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+..++.+||+++.|++++++++.+.+.+
T Consensus       146 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          146 QENQLLFTETSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             HHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4567788999999999999999999877654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.92  E-value=1.9e-05  Score=69.08  Aligned_cols=62  Identities=19%  Similarity=0.248  Sum_probs=37.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~  205 (375)
                      ..++++++|.+|||||||+|.|.+.          .......+..|+......+.+.+.+ .+.++||||...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~----------~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   90 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN----------EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER   90 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS----------CCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence            3578999999999999999999971          1111222223332222234343221 245699999754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.92  E-value=3.4e-06  Score=87.43  Aligned_cols=73  Identities=22%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhh-hccccc----------ccccc--------cccccCCCCCeeeeeEEEEEcc-C
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFP----------VQEKT--------KRATVGPLPGVTQDIAGFKIAH-R  192 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~----------~~~k~--------~~~~v~~~pg~T~~~~~~~i~~-~  192 (375)
                      ...++|+++|.+|+|||||+|.|+.. +.+...          ..|+.        ........+|+|++.....+.. +
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            45679999999999999999999751 111100          00000        0001112578898876433322 2


Q ss_pred             CcEEEEEcCCCCC
Q 017187          193 PSIYVLDTPGVLV  205 (375)
Q Consensus       193 ~~~~liDTPGi~~  205 (375)
                      ..+.++||||...
T Consensus       255 ~~i~iiDTPGh~~  267 (592)
T 3mca_A          255 KIYEIGDAPGHRD  267 (592)
T ss_dssp             ----CCEEESSSE
T ss_pred             eEEEEEECCChHH
Confidence            3588999999753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.91  E-value=7.6e-06  Score=81.20  Aligned_cols=58  Identities=26%  Similarity=0.445  Sum_probs=42.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      -.++++|.||||||||+|+|.+            ....++..|.+|.....  +.......+.++||||+..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg------------~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~  217 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTR------------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE  217 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS------------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHc------------CCccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence            3589999999999999999986            22356677888766542  3333224689999999864

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.90  E-value=9.6e-06  Score=82.92  Aligned_cols=46  Identities=11%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             ccCHHHHHHHHHHHHhhh--h---ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          112 RSSVQKLLELVELKLKEV--I---SREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~~--~---~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..|++.+..+++......  +   .....++|+++|.||||||||+|+|.+
T Consensus        13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~   63 (535)
T 3dpu_A           13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG   63 (535)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred             HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhc
Confidence            457788888877765521  1   235578999999999999999999996

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.89  E-value=2.2e-06  Score=87.70  Aligned_cols=60  Identities=27%  Similarity=0.462  Sum_probs=43.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE--ccCCcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI--AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i--~~~~~~~liDTPGi~~  205 (375)
                      +..+|+++|.+|+|||||+|+|.+.           . ......||+|++...+.+  ..+..+.++||||...
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~-----------~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~   64 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKT-----------Q-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA   64 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHH-----------H-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC-----------C-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence            3467999999999999999999971           1 223356788888764333  2334689999999643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.89  E-value=3.4e-06  Score=83.89  Aligned_cols=90  Identities=12%  Similarity=0.093  Sum_probs=64.5

Q ss_pred             HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCCCcEEEEecCCc
Q 017187           36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFD-SCKQDYIAINAHSR  112 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g~~vi~iSa~~~  112 (375)
                      .+++...+..+|++|+|+|+  ........+.+.  ..++|+++|+||+|+.+.... +..+.+. ..+.+++.+||+++
T Consensus       104 ~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          104 VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCC
Confidence            34566788999999999998  222222222222  347899999999999866543 2333332 34668899999999


Q ss_pred             cCHHHHHHHHHHHHhh
Q 017187          113 SSVQKLLELVELKLKE  128 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~  128 (375)
                      .|++++++.+.+.+++
T Consensus       181 ~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          181 KGFDDIGKTISEILPG  196 (423)
T ss_dssp             TSTTTHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999988844

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.88  E-value=1.6e-05  Score=71.44  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.||||||||+|.+.+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999985

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.87  E-value=2.5e-05  Score=68.40  Aligned_cols=85  Identities=12%  Similarity=0.019  Sum_probs=56.6

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhhH----H----HHHHHHh-----h
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNIL----N----KWVRHFD-----S   99 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~~----~----~~~~~~~-----~   99 (375)
                      ...++.+|++|+|+|+..+.......+..+       ..+.|+++|.||+||.+.+..    .    ...+.+.     .
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            467789999999999987521111222222       247899999999999874321    1    1112221     2


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .+..++.+||++ .|++++++.+.+.
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHH
Confidence            345788999999 9999998887654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.86  E-value=0.00012  Score=62.94  Aligned_cols=85  Identities=18%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             hhhcCeEEEEEeCCCCCC-----------CCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhCC-----C
Q 017187           43 LKISDLVIEVRDSRIPLS-----------SAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFDSCK-----Q  102 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s-----------~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~g-----~  102 (375)
                      ...+++++.|+|+.....           .....+...  ..+.|+++|+||+|+.+..  ..+.+.+.+. ..     .
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE-VPLSEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT-CCGGGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhh-hhhhccCC
Confidence            455778888998753210           000111122  3478999999999998753  2333433332 11     1


Q ss_pred             cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          103 DYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       103 ~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .++.+||+++.|++++++++.+.+.+
T Consensus       159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          159 VFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhcch
Confidence            47899999999999999999887755

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.85  E-value=1.7e-05  Score=78.96  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC----CchhHhhc-----cCC-CCEEEEEEcCCCCCh----hh-
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS----AHPGLQPQ-----LSA-KRRVIALNKKDLANP----NI-   89 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~----~~~~l~~~-----~~~-kp~IiVlNK~DL~~~----~~-   89 (375)
                      +-..|||.. ....+...+..+|++|+|+|++.....    ..++..+.     ..+ .++++|+||+|+.+.    +. 
T Consensus        88 iiDtpG~~~-f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~  166 (435)
T 1jny_A           88 IIDAPGHRD-FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRY  166 (435)
T ss_dssp             ECCCSSSTT-HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred             EEECCCcHH-HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHH
Confidence            345899954 445677789999999999999874000    11122221     123 468999999999872    11 


Q ss_pred             ---HHHHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187           90 ---LNKWVRHFDSCK-----QDYIAINAHSRSSVQ  116 (375)
Q Consensus        90 ---~~~~~~~~~~~g-----~~vi~iSa~~~~gvk  116 (375)
                         .++..+++...+     .+++++||+++.|+.
T Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~  201 (435)
T 1jny_A          167 KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  201 (435)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence               223334444334     468999999999886

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.84  E-value=9.4e-06  Score=71.34  Aligned_cols=88  Identities=14%  Similarity=-0.012  Sum_probs=60.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..+..+|++|+|+|+..+.+...  ..+..+     ..+.|+++|+||+|+.+....  ....++....+..++.+||++
T Consensus        91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  170 (201)
T 3oes_A           91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARE  170 (201)
T ss_dssp             GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTC
T ss_pred             HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCC
Confidence            45778999999999976432211  111111     136799999999999754321  222233334567889999999


Q ss_pred             ccCHHHHHHHHHHHHhh
Q 017187          112 RSSVQKLLELVELKLKE  128 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~  128 (375)
                      +.|++++++.+.+.+.+
T Consensus       171 ~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          171 NQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999887765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.83  E-value=6.1e-06  Score=76.73  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=56.8

Q ss_pred             hhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCC-CCEEEEEEcCCCCChhh----HHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           43 LKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSA-KRRVIALNKKDLANPNI----LNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~-kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      ..++|++++|+|+..+.  .+.. +... ..+ +|+++|+||+|+.+...    ...+.+   ..+.+++++|++++.|+
T Consensus        79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK---ELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH---HHSSCEEECBGGGTBTH
T ss_pred             ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH---HcCCcEEEEEeCCCCCH
Confidence            47899999999997641  1111 1222 234 99999999999864332    222222   34678999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 017187          116 QKLLELVELKLKE  128 (375)
Q Consensus       116 k~Ll~~L~~~l~~  128 (375)
                      +++++.+...+..
T Consensus       154 ~~l~~~i~~~~~~  166 (271)
T 3k53_A          154 EELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998776543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.83  E-value=2.6e-06  Score=79.60  Aligned_cols=87  Identities=15%  Similarity=0.027  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-c-cCCCCEEEEEEcCCCCChhh----HHHHHHHHhhCCCcEEEEe
Q 017187           35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-Q-LSAKRRVIALNKKDLANPNI----LNKWVRHFDSCKQDYIAIN  108 (375)
Q Consensus        35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~-~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g~~vi~iS  108 (375)
                      .+.+.......+|++|+|+|+..+.  .+..+.. + ..+.|+++|+||+|+.+...    .+.+.+   ..+.+++++|
T Consensus        75 ~i~~~~~~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~i~~S  149 (274)
T 3i8s_A           75 QIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA---RLGCPVIPLV  149 (274)
T ss_dssp             HHHHHHHHHTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH---HHTSCEEECC
T ss_pred             HHHHHHHhhcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH---hcCCCEEEEE
Confidence            3333333457999999999997531  1112222 2 34789999999999875432    222222   3467899999


Q ss_pred             cCCccCHHHHHHHHHHHH
Q 017187          109 AHSRSSVQKLLELVELKL  126 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l  126 (375)
                      |+++.|++++++.+.+.+
T Consensus       150 A~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          150 STRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             CGGGHHHHHHHHHHHTCC
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999988886544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.82  E-value=1.1e-05  Score=70.32  Aligned_cols=99  Identities=13%  Similarity=-0.012  Sum_probs=63.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c----CCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L----SAKRRVIALNKKDLANPNI--LNKWVR   95 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~----~~kp~IiVlNK~DL~~~~~--~~~~~~   95 (375)
                      ..||+...  +.+...+..+|++|+|+|+..+.+-.+  ..+..+   .    .+.|+++|+||+|+.+...  .++..+
T Consensus        75 Dt~G~~~~--~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  152 (187)
T 3c5c_A           75 DTADLDTP--RNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVA  152 (187)
T ss_dssp             ECCC---C--CCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred             ECCCCCcc--hhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHH
Confidence            46776421  113467889999999999976432211  111111   1    4789999999999964321  223333


Q ss_pred             HHhhCCCcEEEEec-CCccCHHHHHHHHHHHHh
Q 017187           96 HFDSCKQDYIAINA-HSRSSVQKLLELVELKLK  127 (375)
Q Consensus        96 ~~~~~g~~vi~iSa-~~~~gvk~Ll~~L~~~l~  127 (375)
                      +.++.+..++.+|| +++.|++++++.+.+.+.
T Consensus       153 ~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          153 LAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            34445678899999 899999999998877653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.82  E-value=1.2e-05  Score=78.14  Aligned_cols=25  Identities=44%  Similarity=0.586  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+|+|.+|||||||+|+|++
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTT
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhC
Confidence            5678899999999999999999986

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.81  E-value=1.3e-05  Score=76.99  Aligned_cols=56  Identities=20%  Similarity=0.305  Sum_probs=34.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~  204 (375)
                      ..++|+|+|.+|||||||+|.|.+           .....  ..|  |.......+. ..-.+.++||||-.
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~-----------~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~  220 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKL-----------GEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD  220 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCS-----------SCCEE--EEE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred             CcceEEEECCCCccHHHHHHHHhC-----------CCCCC--ccc--ccceEEEEEecCcEEEEEEECCCCH
Confidence            456899999999999999999986           11111  112  3333322222 22358899999953

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.78  E-value=1.1e-05  Score=69.58  Aligned_cols=81  Identities=19%  Similarity=0.222  Sum_probs=55.6

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChh----hHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPN----ILNKWVRHFDSCKQDYIAINAHSRSSVQKL  118 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L  118 (375)
                      ..+|++++|+|+... ......+... ..+.|+++|+||+|+....    ..+.+.+   ..+.+++.+|++++.|++++
T Consensus        84 ~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l  159 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL-ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEEL  159 (188)
T ss_dssp             HCCSEEEEEEEGGGH-HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHHH
T ss_pred             cCCCEEEEEecchhH-HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---HhCCCeEEEEecCCCCHHHH
Confidence            459999999998642 1111112222 3468999999999986432    2223322   33568899999999999999


Q ss_pred             HHHHHHHHhh
Q 017187          119 LELVELKLKE  128 (375)
Q Consensus       119 l~~L~~~l~~  128 (375)
                      ++++.+.+..
T Consensus       160 ~~~i~~~~~~  169 (188)
T 2wjg_A          160 KKAISIAVKD  169 (188)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999887754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.77  E-value=1.9e-05  Score=79.50  Aligned_cols=92  Identities=15%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCc-hhHhhc-cCCCC-EEEEEEcCCCCC----hhh-
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-------SAH-PGLQPQ-LSAKR-RVIALNKKDLAN----PNI-   89 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-------~~~-~~l~~~-~~~kp-~IiVlNK~DL~~----~~~-   89 (375)
                      +-..|||. +..+.+...+..+|++|+|+|++.+..       ... ..+... ..+.| +|+|+||+|+.+    ++. 
T Consensus       125 iiDtPGh~-~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~  203 (467)
T 1r5b_A          125 LLDAPGHK-GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY  203 (467)
T ss_dssp             ECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred             EEECCCcH-HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH
Confidence            45589995 445667778899999999999987531       111 111111 34666 899999999964    121 


Q ss_pred             ---HHHHHHHHhhC-C------CcEEEEecCCccCHHH
Q 017187           90 ---LNKWVRHFDSC-K------QDYIAINAHSRSSVQK  117 (375)
Q Consensus        90 ---~~~~~~~~~~~-g------~~vi~iSa~~~~gvk~  117 (375)
                         ..+..+++... +      .+++++|++++.|+.+
T Consensus       204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~  241 (467)
T 1r5b_A          204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD  241 (467)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred             HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence               12233344333 3      3588999999998865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.76  E-value=1.9e-05  Score=74.57  Aligned_cols=99  Identities=11%  Similarity=0.058  Sum_probs=64.3

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch------hHhhccCCCCEEEEEEcCCCCChhh-----------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP------GLQPQLSAKRRVIALNKKDLANPNI-----------   89 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~------~l~~~~~~kp~IiVlNK~DL~~~~~-----------   89 (375)
                      ..||+.. ........+.++|++|+|+|+..+.+..+.      .+.....++|+++|+||+|+.+...           
T Consensus       209 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  287 (332)
T 2wkq_A          209 DTAGLED-YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  287 (332)
T ss_dssp             EECCCGG-GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             eCCCchh-hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccc
Confidence            4667532 112233457899999999999765432211      1111134789999999999965321           


Q ss_pred             ---HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187           90 ---LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        90 ---~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                         .+...++.+..+. +++.+||+++.|++++++.+.+.+
T Consensus       288 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          288 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence               1122233334455 789999999999999999987765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.73  E-value=0.00012  Score=69.14  Aligned_cols=60  Identities=22%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi~~  205 (375)
                      ...++|+++|.+|||||||+|.+.+.           .  .....++||.+...  +.+... -.+.++||||...
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~  215 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTN-----------A--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED  215 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHS-----------C--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhC-----------C--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence            56789999999999999999999861           1  12223344444332  222221 1255999999754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.71  E-value=1.7e-06  Score=76.01  Aligned_cols=87  Identities=17%  Similarity=0.138  Sum_probs=50.8

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..++++|++|+|+|+..+.+...  ..+..+    ..+.|+++|+||+|+.+....  +...++....+.+++.+||+++
T Consensus       101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  180 (199)
T 3l0i_B          101 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA  180 (199)
T ss_dssp             C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCC
Confidence            45778999999999987533111  111111    236899999999999754321  1122233345677889999999


Q ss_pred             cCHHHHHHHHHHHHh
Q 017187          113 SSVQKLLELVELKLK  127 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~  127 (375)
                      .|++++++++.+.+.
T Consensus       181 ~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          181 TNVEQSFMTMAAEIK  195 (199)
T ss_dssp             HHHHHHHHHHTTTTT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999998866543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.70  E-value=2.8e-05  Score=76.69  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=43.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhccccccccc-cc--c------cccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEK-TK--R------ATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG  202 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k-~~--~------~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG  202 (375)
                      ...++++++|.+|+|||||+|+|.+....    .++ ..  .      ......+|+|.+.....+. ....+.++||||
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~----~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG   84 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG   84 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHH----SCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhh----cCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence            46789999999999999999999862000    000 00  0      0001135777766543333 234689999999


Q ss_pred             CCC
Q 017187          203 VLV  205 (375)
Q Consensus       203 i~~  205 (375)
                      ...
T Consensus        85 ~~~   87 (405)
T 2c78_A           85 HAD   87 (405)
T ss_dssp             SGG
T ss_pred             hHH
Confidence            764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.69  E-value=3.3e-05  Score=74.43  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.||+|||||+|.|.+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5677899999999999999999985

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.87  E-value=5.3e-06  Score=73.06  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            5678999999999999999999986

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.69  E-value=5.5e-05  Score=68.14  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.++|+|+|.+|||||||++.+..
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHh
Confidence            467999999999999999999986

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.68  E-value=1.1e-05  Score=81.84  Aligned_cols=61  Identities=28%  Similarity=0.450  Sum_probs=42.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP  206 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~  206 (375)
                      +..+|+++|.+|+|||||+|+|++..            ...+..+|+|.+...+.+. .+..+.++||||....
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~------------v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f   64 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTK------------VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAF   64 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHH------------HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCC------------CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH
Confidence            45679999999999999999998621            2223346777776533332 2346899999997543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.68  E-value=1.3e-05  Score=80.41  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++++|.+|+|||||+|+|++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~   29 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIY   29 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHH
Confidence            3457999999999999999999986

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.68  E-value=2.6e-05  Score=67.40  Aligned_cols=99  Identities=17%  Similarity=0.089  Sum_probs=61.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch------hHhhccCCCCEEEEEEcCCCCChh------------
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP------GLQPQLSAKRRVIALNKKDLANPN------------   88 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~------~l~~~~~~kp~IiVlNK~DL~~~~------------   88 (375)
                      ..||+... .......+..+|++|+|+|+..+.+..+.      .+.+...+.|+++|.||+|+.+..            
T Consensus        61 Dt~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  139 (184)
T 1m7b_A           61 DTSGSPYY-DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT  139 (184)
T ss_dssp             EECCSGGG-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             ECCCChhh-hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence            36676321 11122457899999999999765332211      111113578999999999997421            


Q ss_pred             --hHHHHHHHHhhCC-CcEEEEecC-CccCHHHHHHHHHHHH
Q 017187           89 --ILNKWVRHFDSCK-QDYIAINAH-SRSSVQKLLELVELKL  126 (375)
Q Consensus        89 --~~~~~~~~~~~~g-~~vi~iSa~-~~~gvk~Ll~~L~~~l  126 (375)
                        ..+...++.+..+ ..++.+||+ ++.|++++++.+.+.+
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence              1112222222334 578899998 6899999999887654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.68  E-value=4.5e-05  Score=75.02  Aligned_cols=67  Identities=24%  Similarity=0.271  Sum_probs=42.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~  204 (375)
                      ..++++++|.+|+|||||+|+|.+....    .++..        ........|+|.+.....+. ....+.++||||..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~----~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~   77 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAE----GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHH----TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhh----cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence            4578999999999999999999862100    00000        00111245788776544443 23468999999974

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.66  E-value=1.7e-05  Score=74.25  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=54.1

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChh----hHHHHHHHHhhCCCcEEEEecCCccCHHH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPN----ILNKWVRHFDSCKQDYIAINAHSRSSVQK  117 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~~~g~~vi~iSa~~~~gvk~  117 (375)
                      ..+|++|.|+|+....  .+..+ ..+ ..++|+++|+||+|+....    ..+.+.+   ..+.+++++||+++.|+++
T Consensus        79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~vi~~SA~~g~gi~e  153 (272)
T 3b1v_A           79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY---HLGVPVVATSALKQTGVDQ  153 (272)
T ss_dssp             TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBTTTTBSHHH
T ss_pred             CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---HcCCCEEEEEccCCCCHHH
Confidence            4699999999997531  11112 122 2578999999999986432    1223333   3467899999999999999


Q ss_pred             HHHHHHHHH
Q 017187          118 LLELVELKL  126 (375)
Q Consensus       118 Ll~~L~~~l  126 (375)
                      +++.+.+.+
T Consensus       154 l~~~i~~~~  162 (272)
T 3b1v_A          154 VVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHHH
Confidence            999886543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.66  E-value=2.9e-05  Score=68.94  Aligned_cols=86  Identities=19%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch---h---HhhccCCCCEEEEEEcCCCCChh--------------hHHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP---G---LQPQLSAKRRVIALNKKDLANPN--------------ILNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~---~---l~~~~~~kp~IiVlNK~DL~~~~--------------~~~~~~~~~~~~  100 (375)
                      ..+.++|++|+|+|+..+.+..+.   .   +.+...+.|+++|.||+|+.+..              ..++..++.+..
T Consensus        95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A           95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            457899999999999765332211   1   11113578999999999997421              111222223233


Q ss_pred             C-CcEEEEecC-CccCHHHHHHHHHHHH
Q 017187          101 K-QDYIAINAH-SRSSVQKLLELVELKL  126 (375)
Q Consensus       101 g-~~vi~iSa~-~~~gvk~Ll~~L~~~l  126 (375)
                      + ..++.+||+ ++.|++++++.+.+.+
T Consensus       175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          175 GAATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            4 578999998 6889999999887654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.66  E-value=6e-05  Score=67.92  Aligned_cols=88  Identities=19%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ...++.+|++++|.|...+.+-.+  ..+..+    ..+.|+++|.||+||.+...  .++..++.++.+..++.+||++
T Consensus        80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAkt  159 (216)
T 4dkx_A           80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA  159 (216)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTT
T ss_pred             HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCC
Confidence            356789999999999876533221  112221    24678999999999975321  2233333344567889999999


Q ss_pred             ccCHHHHHHHHHHHHh
Q 017187          112 RSSVQKLLELVELKLK  127 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~  127 (375)
                      +.|++++++.|.+.+.
T Consensus       160 g~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          160 GYNVKQLFRRVAAALP  175 (216)
T ss_dssp             TBSHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999998876654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.66  E-value=6e-05  Score=74.80  Aligned_cols=64  Identities=17%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC---CcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR---PSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~---~~~~liDTPGi~~  205 (375)
                      ..++++|+|.+|+|||||+|.|.+.- .    .+   .......|+.++....+.....   +.+.++||||+..
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~-l----~g---~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTK-F----EG---EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSC-C--------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCcc-c----cC---CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence            33459999999999999999999831 0    00   1112224566665444433322   2578999999965

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.66  E-value=1.4e-05  Score=80.27  Aligned_cols=107  Identities=11%  Similarity=0.099  Sum_probs=65.0

Q ss_pred             hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC-------Cch-hHhhc-cCCCC-
Q 017187            9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS-------AHP-GLQPQ-LSAKR-   74 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~-------~~~-~l~~~-~~~kp-   74 (375)
                      +|+++......+....    +-.-|||. +..+.+...+..+|++|+|+|++.+...       ... .+... ..+.| 
T Consensus        69 ~GiTi~~~~~~~~~~~~~~~iiDtPGh~-~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~  147 (458)
T 1f60_A           69 RGITIDIALWKFETPKYQVTVIDAPGHR-DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQ  147 (458)
T ss_dssp             TTCCCSCSCEEEECSSEEEEEEECCCCT-THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCE
T ss_pred             cCcEEEEEEEEEecCCceEEEEECCCcH-HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCe
Confidence            5665544433333322    34589994 4556677788999999999999864210       111 11111 23555 


Q ss_pred             EEEEEEcCCCCC--hhhHH----HHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187           75 RVIALNKKDLAN--PNILN----KWVRHFDSCK-----QDYIAINAHSRSSVQ  116 (375)
Q Consensus        75 ~IiVlNK~DL~~--~~~~~----~~~~~~~~~g-----~~vi~iSa~~~~gvk  116 (375)
                      +|+|+||+|+.+  ++..+    ++.+++...+     .+++++||+++.|+.
T Consensus       148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~  200 (458)
T 1f60_A          148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  200 (458)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence            889999999983  33222    2333333333     578999999998875

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.65  E-value=2.9e-06  Score=88.00  Aligned_cols=102  Identities=19%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-------CCCchhHhhc--cCCCC-EEEEEEcCCCCC--hhhH--
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-------SSAHPGLQPQ--LSAKR-RVIALNKKDLAN--PNIL--   90 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-------s~~~~~l~~~--~~~kp-~IiVlNK~DL~~--~~~~--   90 (375)
                      +-.-|||. +..+.+...+..+|++|+|+|++.+.       ..........  ..+.| +|+|+||+|+++  ++..  
T Consensus       259 iiDTPGh~-~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~  337 (592)
T 3mca_A          259 IGDAPGHR-DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE  337 (592)
T ss_dssp             CCEEESSS-EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHH
T ss_pred             EEECCChH-HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHH
Confidence            44578884 22333445567899999999998643       2221111111  34555 889999999976  3322  


Q ss_pred             --HHHHHHH-hhCCC-----cEEEEecCCccCHH--------------HHHHHHHHHHh
Q 017187           91 --NKWVRHF-DSCKQ-----DYIAINAHSRSSVQ--------------KLLELVELKLK  127 (375)
Q Consensus        91 --~~~~~~~-~~~g~-----~vi~iSa~~~~gvk--------------~Ll~~L~~~l~  127 (375)
                        ..+.+++ ...++     +++++||+++.|+.              .|++.|....+
T Consensus       338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence              2333444 33344     58999999999987              68888766554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.65  E-value=5.6e-05  Score=74.96  Aligned_cols=88  Identities=16%  Similarity=0.234  Sum_probs=63.7

Q ss_pred             HHhhhcCeEEEEEeCC-CCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187           41 HRLKISDLVIEVRDSR-IPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRS  113 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar-~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~  113 (375)
                      +.++.+|.+++|+|+. .+.....   .++..+   +..+|.++|+||+|+........+.+.+.+.+..++.+||+++.
T Consensus       231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~  310 (416)
T 1udx_A          231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA  310 (416)
T ss_dssp             HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence            4467899999999985 2221111   111221   24689999999999987644555666665557789999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 017187          114 SVQKLLELVELKLKE  128 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~  128 (375)
                      ++++|++.+.+.+.+
T Consensus       311 gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          311 GLPALKEALHALVRS  325 (416)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999888765

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.64  E-value=2.5e-05  Score=78.93  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGV  203 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi  203 (375)
                      ..++++++|.+|+|||||+|+|.+.....     .-........+|+|.+...  +.+. +..+.++||||.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~-----~~d~~~~e~~~GiTi~~~~~~~~~~-~~~i~iiDtPGh   83 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTS-----AHDKLPESQKRGITIDIGFSAFKLE-NYRITLVDAPGH   83 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEET-TEEEEECCCSSH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCccc-----ccccccccccCccEEecceEEEEEC-CEEEEEEECCCh
Confidence            35899999999999999999999721000     0011234456788877652  3332 236899999996

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.63  E-value=1.3e-05  Score=83.30  Aligned_cols=93  Identities=19%  Similarity=0.186  Sum_probs=58.5

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-------CCCchhHhhc---cCCCCEEEEEEcCCCCCh--hhH--
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-------SSAHPGLQPQ---LSAKRRVIALNKKDLANP--NIL--   90 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-------s~~~~~l~~~---~~~kp~IiVlNK~DL~~~--~~~--   90 (375)
                      +-.-||| .+..+.+...+..+|++|+|+|++.+.       ..........   ...+++|+|+||+|+.+.  ...  
T Consensus       249 iiDTPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~e  327 (611)
T 3izq_1          249 IVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE  327 (611)
T ss_dssp             EEECCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHH
T ss_pred             EEECCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHH
Confidence            4458999 345566667789999999999997631       1111111111   233458999999999872  211  


Q ss_pred             --HHHHHHHhhC-----CCcEEEEecCCccCHHHH
Q 017187           91 --NKWVRHFDSC-----KQDYIAINAHSRSSVQKL  118 (375)
Q Consensus        91 --~~~~~~~~~~-----g~~vi~iSa~~~~gvk~L  118 (375)
                        +....++...     ..+++++||+++.|+.++
T Consensus       328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          328 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence              2222333322     347899999999998754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.62  E-value=3.9e-05  Score=73.98  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=23.0

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ......++++|.||+|||||+|.|.+
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            35678899999999999999999975

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.61  E-value=9.6e-05  Score=67.58  Aligned_cols=90  Identities=17%  Similarity=0.134  Sum_probs=58.1

Q ss_pred             HHHHHhhhcCeEEEEEeCCCCCCCCchh-H----hh-c-cCCCCEEEEEEcCCCCChhhHHHHHHH--------------
Q 017187           38 AIKHRLKISDLVIEVRDSRIPLSSAHPG-L----QP-Q-LSAKRRVIALNKKDLANPNILNKWVRH--------------   96 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~-l----~~-~-~~~kp~IiVlNK~DL~~~~~~~~~~~~--------------   96 (375)
                      .+.+.+.. +++++|+|+.......... .    .. . ..++|.++|+||+|+.+....+...++              
T Consensus       131 ~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~  209 (262)
T 1yrb_A          131 RLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLD  209 (262)
T ss_dssp             HHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred             HHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhcc
Confidence            34455667 9999999986543322111 0    01 1 236899999999999875432211111              


Q ss_pred             --------------Hhh--CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 --------------FDS--CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 --------------~~~--~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                                    .++  ...+++++|++++.|+++|++++.+.++.
T Consensus       210 ~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          210 PSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             CSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence                          111  22368999999999999999999887754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.60  E-value=0.00012  Score=75.92  Aligned_cols=103  Identities=19%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--------------
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--------------   88 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--------------   88 (375)
                      +-.-|||..-. ......+..+|++|+|+|+..+.........+.  ..+.|+++|+||+|+.+..              
T Consensus        74 liDTPGhe~F~-~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~  152 (594)
T 1g7s_A           74 FIDTPGHEAFT-TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK  152 (594)
T ss_dssp             EECCCTTSCCT-TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred             EEECCCcHHHH-HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHH
Confidence            33567873221 111234677999999999988654322222122  3578999999999997421              


Q ss_pred             ---h--------HHHHHHHHhhCC---------------CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           89 ---I--------LNKWVRHFDSCK---------------QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        89 ---~--------~~~~~~~~~~~g---------------~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                         .        ..+..+.+.+.+               .+++++||+++.|+++|++++...++.
T Consensus       153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence               0        011222222222               268899999999999999999877653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.60  E-value=6.8e-05  Score=74.61  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++++|.+|+|||||+|+|++
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~   46 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLH   46 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHh
Confidence            3458999999999999999999986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.59  E-value=8.3e-05  Score=66.12  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .....++++|.+|||||||+|.|..
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3557899999999999999999986

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.58  E-value=0.00016  Score=71.60  Aligned_cols=66  Identities=29%  Similarity=0.417  Sum_probs=38.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~  206 (375)
                      ....++++|.+|+|||||+|+|.+.-...   .  +. ..++.. -+|+....+.....+++.++|+||+..+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~---~--Gs-I~~~g~-~~t~~~~v~q~~~~~~ltv~D~~g~~~~  133 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEE---E--GA-AKTGVV-EVTMERHPYKHPNIPNVVFWDLPGIGST  133 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTS---T--TS-CCCCC-----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcc---C--ce-EEECCe-ecceeEEeccccccCCeeehHhhcccch
Confidence            45689999999999999999999832111   0  11 111111 1233211122222346899999998653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.56  E-value=0.00019  Score=67.58  Aligned_cols=93  Identities=16%  Similarity=0.202  Sum_probs=58.8

Q ss_pred             HHHHHHHhhhcCeEEEEEeC-CCCCCCCch-hHhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHH-HhhCCCcEEEEec
Q 017187           36 TRAIKHRLKISDLVIEVRDS-RIPLSSAHP-GLQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRH-FDSCKQDYIAINA  109 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDa-r~p~s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~-~~~~g~~vi~iSa  109 (375)
                      ...+...++.+|++++|+|+ ..+...... .+.+.  ..++|+++|+||+|+.++.. ..++.+. +...+...+++++
T Consensus       158 ~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~  237 (315)
T 1jwy_B          158 RRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVIN  237 (315)
T ss_dssp             HHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCC
T ss_pred             HHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEec
Confidence            34566788999999999996 545443332 34443  35789999999999986543 2222221 1111133445544


Q ss_pred             ---CC---ccCHHHHHHHHHHHHhh
Q 017187          110 ---HS---RSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ---~~---~~gvk~Ll~~L~~~l~~  128 (375)
                         .+   +.|+.++++.+...++.
T Consensus       238 ~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          238 RSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             CCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             CChhhhccCCCHHHHHHHHHHHHhC
Confidence               44   67889998888887764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.55  E-value=6.6e-05  Score=70.08  Aligned_cols=24  Identities=38%  Similarity=0.671  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      .++++++|.+|+|||||+|+|.+.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999999983

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.55  E-value=4.8e-05  Score=77.72  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      ..++.+|++|+|+|++.+ ......+..+   ..++|+++|+||+|+.+...  .+...+.+...+.+++.+||+++.|+
T Consensus       117 ~~l~~~d~ii~V~D~s~~-~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi  195 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD-SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGV  195 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG-GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----C
T ss_pred             HHccCCcEEEEEEeCCCc-hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCH
Confidence            457789999999998753 1111111222   24689999999999976432  33445555556778999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 017187          116 QKLLELVELKLKE  128 (375)
Q Consensus       116 k~Ll~~L~~~l~~  128 (375)
                      +++++.+.+.+..
T Consensus       196 ~eL~~~l~~~~~~  208 (535)
T 3dpu_A          196 ESIAKSLKSAVLH  208 (535)
T ss_dssp             TTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.52  E-value=0.0001  Score=66.11  Aligned_cols=86  Identities=15%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             hhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCcc
Q 017187           43 LKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSRS  113 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~~  113 (375)
                      ...+|.+|+|+|...+.+-.+  ..   +.+.  ..+.|+++|.||+||.+...  .++...+....+.+++.+||+++.
T Consensus       109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            567899999999875422111  11   1111  23689999999999964321  112112222345678999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 017187          114 SVQKLLELVELKLKE  128 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~  128 (375)
                      |++++++.+.+.+..
T Consensus       189 ~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          189 NVKELFEGIVRQVRL  203 (211)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999998776643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.51  E-value=8e-05  Score=64.41  Aligned_cols=100  Identities=17%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhHH----HHHHHH
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNILN----KWVRHF   97 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~~----~~~~~~   97 (375)
                      .+|... ........+..+|++++|+|...+..+..   ..+.++   ..+.|+++|.||+|+.+.....    ...+.+
T Consensus        63 t~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  141 (184)
T 2zej_A           63 FAGREE-FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKEL  141 (184)
T ss_dssp             ECSHHH-HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHT
T ss_pred             cCCCHH-HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHH
Confidence            566532 11222345788999999999876532211   112222   2468999999999998654332    222333


Q ss_pred             h-hCCCc----EEEEecCCcc-CHHHHHHHHHHHHhh
Q 017187           98 D-SCKQD----YIAINAHSRS-SVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~-~~g~~----vi~iSa~~~~-gvk~Ll~~L~~~l~~  128 (375)
                      . ..+..    ++.+||+++. ++++|.+.+.+.+..
T Consensus       142 ~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          142 LNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             TTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            2 23444    7889999996 999999888776654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.51  E-value=5.8e-05  Score=73.69  Aligned_cols=49  Identities=16%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~  205 (375)
                      +++++|.+|+|||||+|+|..                    .|+|.+.....+. ....+.++||||...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~--------------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~   72 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK--------------------KGTSSDITMYNNDKEGRNMVFVDAHSYPK   72 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE--------------------EEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh--------------------CCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence            899999999999999999983                    1344444432222 233589999999854

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.50  E-value=3.2e-05  Score=79.04  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+|+++|.+|||||||+|+|+.
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~   35 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLL   35 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHh
Confidence            356899999999999999999973

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.50  E-value=9.7e-05  Score=72.86  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++++|.+|+|||||+|+|.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g   30 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTG   30 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHS
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Confidence            4678999999999999999999986

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.50  E-value=7.2e-05  Score=73.82  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|+|||||+|+|.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g   32 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTG   32 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhC
Confidence            4568999999999999999999986

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.49  E-value=4.5e-05  Score=75.93  Aligned_cols=73  Identities=22%  Similarity=0.293  Sum_probs=36.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhh-hcccccc----------cccc--------cccccCCCCCeeeeeEEEEEc-cC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPV----------QEKT--------KRATVGPLPGVTQDIAGFKIA-HR  192 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~----------~~k~--------~~~~v~~~pg~T~~~~~~~i~-~~  192 (375)
                      ...++++++|.+|+|||||+|+|+.. +......          .|+.        ........+|+|.+.....+. ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45689999999999999999999862 1111000          0000        000011246788776532232 23


Q ss_pred             CcEEEEEcCCCCC
Q 017187          193 PSIYVLDTPGVLV  205 (375)
Q Consensus       193 ~~~~liDTPGi~~  205 (375)
                      ..+.++||||...
T Consensus        84 ~~~~iiDtpG~~~   96 (435)
T 1jny_A           84 YFFTIIDAPGHRD   96 (435)
T ss_dssp             CEEEECCCSSSTT
T ss_pred             eEEEEEECCCcHH
Confidence            3689999999754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.47  E-value=8.8e-05  Score=71.83  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .....|+++|.||||||||+|.|..
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999975

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.47  E-value=7.6e-05  Score=69.40  Aligned_cols=82  Identities=10%  Similarity=0.084  Sum_probs=47.5

Q ss_pred             cCeEEEEEeCC-CCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHHHH
Q 017187           46 SDLVIEVRDSR-IPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQKLL  119 (375)
Q Consensus        46 ~DlVI~VvDar-~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~Ll  119 (375)
                      +|++++++|.. .++...+..+.+. ...+|+|+|+||+|+.++.....    +.+.+...+.+++.+|+.++.++.++.
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~  195 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  195 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence            78888888654 3444433333333 34789999999999987655443    334444567788889999999999998


Q ss_pred             HHHHHHHh
Q 017187          120 ELVELKLK  127 (375)
Q Consensus       120 ~~L~~~l~  127 (375)
                      +.+.+.++
T Consensus       196 ~~l~~~~p  203 (274)
T 3t5d_A          196 KKIKDRLP  203 (274)
T ss_dssp             HHHHHTCS
T ss_pred             HHHhcCCC
Confidence            88876553

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.45  E-value=0.0001  Score=77.71  Aligned_cols=71  Identities=20%  Similarity=0.160  Sum_probs=37.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhh-hccccccccc-ccccccCC------CCCeeeeeEEEEEc-cCCcEEEEEcCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK-TKRATVGP------LPGVTQDIAGFKIA-HRPSIYVLDTPGV  203 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k-~~~~~v~~------~pg~T~~~~~~~i~-~~~~~~liDTPGi  203 (375)
                      ....+|+++|.+|+|||||+|+|+.. +.+..  .+. .....+.+      .+|+|.......+. .+..+.++||||.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~--~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHK--IGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccc--cccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            34578999999999999999999852 11110  000 00011222      35667655432222 2335889999999


Q ss_pred             CC
Q 017187          204 LV  205 (375)
Q Consensus       204 ~~  205 (375)
                      ..
T Consensus        86 ~d   87 (693)
T 2xex_A           86 VD   87 (693)
T ss_dssp             SS
T ss_pred             cc
Confidence            65

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.43  E-value=0.00015  Score=71.40  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....++|+++|.+|+|||||+|+|.+
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~   30 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITG   30 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            35678999999999999999999986

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.42  E-value=0.00022  Score=75.25  Aligned_cols=103  Identities=10%  Similarity=0.065  Sum_probs=67.7

Q ss_pred             cccchhHHH--HHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc--cCCCCEEEEEEcCCCCChh--------hHH-
Q 017187           26 NWFPGHMAA--ATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ--LSAKRRVIALNKKDLANPN--------ILN-   91 (375)
Q Consensus        26 ~wfpgHm~k--~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~--~~~kp~IiVlNK~DL~~~~--------~~~-   91 (375)
                      -.-||+...  ....+...++++|+||+|+|+..+.+..+.. +.+.  ..++|+++|+||+|+.+..        ..+ 
T Consensus       179 iDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~  258 (695)
T 2j69_A          179 VDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQA  258 (695)
T ss_dssp             EECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHH
T ss_pred             EECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHH
Confidence            346775432  2345667889999999999998876644332 2222  2367899999999997542        111 


Q ss_pred             ---HHH----HHHhh---------CCCcEEEEecC--------------CccCHHHHHHHHHHHHhh
Q 017187           92 ---KWV----RHFDS---------CKQDYIAINAH--------------SRSSVQKLLELVELKLKE  128 (375)
Q Consensus        92 ---~~~----~~~~~---------~g~~vi~iSa~--------------~~~gvk~Ll~~L~~~l~~  128 (375)
                         ...    +.+..         ....++++||+              ++.|++++.+.+.+.+..
T Consensus       259 ~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          259 SENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence               111    11211         11368999999              999999999988876643

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.41  E-value=0.00018  Score=68.49  Aligned_cols=89  Identities=11%  Similarity=0.156  Sum_probs=62.7

Q ss_pred             HhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhhh------hccCCceEEE
Q 017187           66 LQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEV------ISREPTLLVM  139 (375)
Q Consensus        66 l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~------~~~~~~~~v~  139 (375)
                      ++++.......+|++|.|..+++.+    +..++.+.+++.++..+...+..+..++...+...      .-...+.-++
T Consensus        73 ler~l~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl  148 (314)
T 1ko7_A           73 MRKLCRPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVL  148 (314)
T ss_dssp             HHHHCCTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEE
T ss_pred             HHHHhcCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEE
Confidence            3444445566789999999866533    33344578888887777777788777776654321      0123456799


Q ss_pred             EEcCCCCChHHHHHHHHhh
Q 017187          140 VVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       140 vvG~pnvGKSsliN~L~~~  158 (375)
                      ++|.||+||||+.+.|.+.
T Consensus       149 ~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          149 ITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEESTTSSHHHHHHHHHHT
T ss_pred             EEeCCCCCHHHHHHHHHhc
Confidence            9999999999999999974

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.40  E-value=0.00057  Score=59.92  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=59.6

Q ss_pred             hhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhH----HHHHHHHhhCC--CcEEEEecCCccCH
Q 017187           44 KISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNIL----NKWVRHFDSCK--QDYIAINAHSRSSV  115 (375)
Q Consensus        44 ~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~----~~~~~~~~~~g--~~vi~iSa~~~~gv  115 (375)
                      ..+|.+++|+|+..+.+.....+.++  ..+.|.++|.||+|+.+....    ....+.+.+.+  ...+++|++++.++
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~  186 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV  186 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred             hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence            57899999999987755332233333  357899999999999875422    23333343332  35788999999999


Q ss_pred             HHHHHHHHHHHhh
Q 017187          116 QKLLELVELKLKE  128 (375)
Q Consensus       116 k~Ll~~L~~~l~~  128 (375)
                      +++++.+.+.+.+
T Consensus       187 ~~l~~~l~~~~~~  199 (210)
T 1pui_A          187 DKLRQKLDTWFSE  199 (210)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999877643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.37  E-value=0.00033  Score=61.12  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187           42 RLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ....+|.+++|+|..++.+-.+  ..   +.+.  ..+.|+++|.||+||.....  ......+....+.+++.+||+++
T Consensus        77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g  156 (192)
T 2cjw_A           77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ  156 (192)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence            4567899999999875432111  11   1111  13689999999999964321  12211222234567889999999


Q ss_pred             cCHHHHHHHHHHHHh
Q 017187          113 SSVQKLLELVELKLK  127 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~  127 (375)
                      .|++++++.+.+.+.
T Consensus       157 ~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          157 HNVKELFEGIVRQVR  171 (192)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999998877664

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.36  E-value=0.00017  Score=73.65  Aligned_cols=72  Identities=14%  Similarity=0.234  Sum_probs=36.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh-hccccc---ccccccccccC------CCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI-ALSRFP---VQEKTKRATVG------PLPGVTQDIAGFKIA-HRPSIYVLDTPG  202 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~---~~~k~~~~~v~------~~pg~T~~~~~~~i~-~~~~~~liDTPG  202 (375)
                      ...+++++|.+|+|||||+|+|+.. +.+...   ..++.....+.      ...|+|.......+. .+..+.++||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            4578999999999999999999862 111000   00000001111      244566544322222 223588999999


Q ss_pred             CCC
Q 017187          203 VLV  205 (375)
Q Consensus       203 i~~  205 (375)
                      ...
T Consensus        92 ~~d   94 (529)
T 2h5e_A           92 HED   94 (529)
T ss_dssp             STT
T ss_pred             Chh
Confidence            854

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.35  E-value=0.00019  Score=69.07  Aligned_cols=84  Identities=12%  Similarity=0.097  Sum_probs=54.0

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHh----hC-------CCcEEEEecC
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFD----SC-------KQDYIAINAH  110 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~----~~-------g~~vi~iSa~  110 (375)
                      ....+|++++|+|+..+....  .+.....++|.++|+||+|+.+........+.++    ..       ..+++++||+
T Consensus       166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~  243 (341)
T 2p67_A          166 VARMVDCFISLQIAGGGDDLQ--GIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSAL  243 (341)
T ss_dssp             HHTTCSEEEEEECC------C--CCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGG
T ss_pred             HHHhCCEEEEEEeCCccHHHH--HHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCC
Confidence            468999999999986442211  1111112468899999999987533332222221    11       3467899999


Q ss_pred             CccCHHHHHHHHHHHHh
Q 017187          111 SRSSVQKLLELVELKLK  127 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~  127 (375)
                      ++.|++.|++++.+.+.
T Consensus       244 ~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          244 EKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             GTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987664

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.35  E-value=0.00015  Score=68.68  Aligned_cols=25  Identities=44%  Similarity=0.586  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-.++|+++|.+|||||||+|.|.+
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.35  E-value=0.00024  Score=72.53  Aligned_cols=62  Identities=19%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      +-..|||.. ....+...+..+|.+|+|+|+..+.......+.+.  ..+.|+++|+||+|+...
T Consensus        86 liDTPG~~d-f~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           86 LLDTPGHED-FSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             EECCCCSTT-CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred             EEECCCChh-HHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence            445899943 23456678999999999999987654333333332  347899999999999754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.35  E-value=0.0004  Score=72.89  Aligned_cols=58  Identities=14%  Similarity=0.079  Sum_probs=42.2

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA   85 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~   85 (375)
                      ..|||.. ....+...+..+|.+++|+|+..........+.+.  ..+.|+++|+||+|+.
T Consensus        80 DTpG~~~-f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           80 DAPGYGD-FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             ECCCSGG-GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             eCCCccc-hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence            3599954 33567788999999999999876654332223222  3578999999999987

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.35  E-value=0.00017  Score=74.66  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..+|+++|.+|+|||||+|+|++
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~   27 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRG   27 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhc
Confidence            456899999999999999999997

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.32  E-value=0.00041  Score=67.05  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHH----HHHHHHhh-------CCCcEEEEecC
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN----KWVRHFDS-------CKQDYIAINAH  110 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~~-------~g~~vi~iSa~  110 (375)
                      ..+.+|++++|+|+..+...  ..+.......|.++|+||+|+.+.....    .+...+..       ...+++++|++
T Consensus       184 l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~  261 (349)
T 2www_A          184 VADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISAR  261 (349)
T ss_dssp             HHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTT
T ss_pred             HHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecC
Confidence            46799999999998764321  1121112356889999999997643222    22222211       12467899999


Q ss_pred             CccCHHHHHHHHHHHHh
Q 017187          111 SRSSVQKLLELVELKLK  127 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~  127 (375)
                      ++.|+++|.++|.+.+.
T Consensus       262 ~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          262 SGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.32  E-value=0.00022  Score=70.75  Aligned_cols=25  Identities=44%  Similarity=0.586  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-.++|+|+|.+|||||||+|.|.+
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g   53 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFL   53 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhC
Confidence            4457899999999999999999997

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.30  E-value=6.3e-05  Score=70.21  Aligned_cols=90  Identities=8%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             HHHHHHhhhcCeEE-EEEeCCCCCCCCch-hHhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHH-HhhC--C-CcEEEE
Q 017187           37 RAIKHRLKISDLVI-EVRDSRIPLSSAHP-GLQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRH-FDSC--K-QDYIAI  107 (375)
Q Consensus        37 ~~i~~~l~~~DlVI-~VvDar~p~s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~-~~~~--g-~~vi~i  107 (375)
                      ..+...+..+|.+| +|+|+..+.+.... .+.+.  ..++|+++|+||+|+.++.. ...+.+. +...  + ..++.+
T Consensus       153 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  232 (299)
T 2aka_B          153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR  232 (299)
T ss_dssp             HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCC
T ss_pred             HHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECC
Confidence            44556777888665 79999876655432 23333  34689999999999986533 2222211 1011  2 256788


Q ss_pred             ecCCccCHHHHHHHHHHHH
Q 017187          108 NAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~~l  126 (375)
                      ||+++.|++++.+.+.+..
T Consensus       233 SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          233 SQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             CCBCTTSCBCHHHHHHHHH
T ss_pred             ChhhccccccHHHHHHHHH
Confidence            9999999999988887643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.28  E-value=0.00011  Score=67.32  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=57.0

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc----cC---CCCEEEEEE-cCCCCChhhHHH------------HHHH
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ----LS---AKRRVIALN-KKDLANPNILNK------------WVRH   96 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~----~~---~kp~IiVlN-K~DL~~~~~~~~------------~~~~   96 (375)
                      +.+...++.+|++|+|+|+.. +......+.+.    ..   .+|.++|+| |+|+.+.. ...            +.+.
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence            344456788999999999974 33222222222    11   468888888 99998542 222            2222


Q ss_pred             HhhCC--CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCK--QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +....  ...+++||+++.|++++++.+.+.+..
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            22110  111678999999999999999887765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.27  E-value=0.00039  Score=62.90  Aligned_cols=87  Identities=14%  Similarity=0.124  Sum_probs=51.5

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch-hHhhc------cCCCCEEEEEEcCCCCChhhHH--------HHHHHHhhCCCcEE
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP-GLQPQ------LSAKRRVIALNKKDLANPNILN--------KWVRHFDSCKQDYI  105 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~-~l~~~------~~~kp~IiVlNK~DL~~~~~~~--------~~~~~~~~~g~~vi  105 (375)
                      ...+.+|++|+|+|+.. ++.... .+..+      ...+|+++|+||+|+.+...+.        ...+..++++..++
T Consensus       108 ~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~  186 (239)
T 3lxx_A          108 LTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYC  186 (239)
T ss_dssp             HTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEE
T ss_pred             hcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEE
Confidence            33456799999999863 333222 22222      1236999999999998654333        22233345566677


Q ss_pred             EEecCCc-----cCHHHHHHHHHHHHhh
Q 017187          106 AINAHSR-----SSVQKLLELVELKLKE  128 (375)
Q Consensus       106 ~iSa~~~-----~gvk~Ll~~L~~~l~~  128 (375)
                      ++++..+     .++.+|++.+...+.+
T Consensus       187 ~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          187 ALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            7776643     5788888887776654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.25  E-value=0.00042  Score=73.03  Aligned_cols=62  Identities=24%  Similarity=0.203  Sum_probs=43.9

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      +-.-|||.. -...+...+..+|.+|+|+|+..+.+.....+...  ..+.|+++|+||+|+...
T Consensus        81 liDTPG~~d-f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           81 IIDTPGHVD-FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             EECCCSSTT-CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             EEECcCccc-hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence            445899943 33456678899999999999987655433222222  357899999999999754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.22  E-value=0.00046  Score=65.28  Aligned_cols=97  Identities=13%  Similarity=0.029  Sum_probs=59.6

Q ss_pred             cccchhHHHH----HHHHHHHhhhcCeEEEEEeCCCCCCCCch-h----Hhhc---cCCCCEEEEEEcCCCCChhhH---
Q 017187           26 NWFPGHMAAA----TRAIKHRLKISDLVIEVRDSRIPLSSAHP-G----LQPQ---LSAKRRVIALNKKDLANPNIL---   90 (375)
Q Consensus        26 ~wfpgHm~k~----~~~i~~~l~~~DlVI~VvDar~p~s~~~~-~----l~~~---~~~kp~IiVlNK~DL~~~~~~---   90 (375)
                      -..||+..-.    .......++++|++|+|+|+..+.+..+. .    +...   ..+.|+++|+||+|+.+.+..   
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~  136 (307)
T 3r7w_A           57 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREEL  136 (307)
T ss_dssp             EEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred             EECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHH
Confidence            3478874321    12334567899999999999876433221 1    1121   247899999999999873322   


Q ss_pred             -----HHHHHHHhhCC---CcEEEEecCCccCHHHHHHHHH
Q 017187           91 -----NKWVRHFDSCK---QDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus        91 -----~~~~~~~~~~g---~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                           +...++.+..|   .+++.+|+++ .++.+++..+.
T Consensus       137 ~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv  176 (307)
T 3r7w_A          137 FQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV  176 (307)
T ss_dssp             HHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence                 22223333444   5788999998 56655555443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.21  E-value=0.00026  Score=62.86  Aligned_cols=80  Identities=10%  Similarity=0.056  Sum_probs=52.3

Q ss_pred             cCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChh--hHHHHHHHHhh--CCCcEEEEecCCccCHHHHHH
Q 017187           46 SDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPN--ILNKWVRHFDS--CKQDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        46 ~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~--~g~~vi~iSa~~~~gvk~Ll~  120 (375)
                      .+.+++|+|+..+..   ...... ..++|.++|+||+|+.+..  ......+.+++  ...+++.+|++++.|++++++
T Consensus       130 ~~~~i~vvd~~~~~~---~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~  206 (221)
T 2wsm_A          130 ENYRVVMVSVTEGDD---VVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWID  206 (221)
T ss_dssp             CSEEEEEEEGGGCTT---HHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHH
T ss_pred             cCcEEEEEeCCCcch---hhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHH
Confidence            455667999875421   111111 2357899999999996431  23333444432  245789999999999999999


Q ss_pred             HHHHHHhh
Q 017187          121 LVELKLKE  128 (375)
Q Consensus       121 ~L~~~l~~  128 (375)
                      ++.+.+..
T Consensus       207 ~l~~~~~~  214 (221)
T 2wsm_A          207 FLRGILNV  214 (221)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            99876643

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.20  E-value=0.00042  Score=71.06  Aligned_cols=78  Identities=18%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             HhcccccceEEee--CC--CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEc
Q 017187            8 KKGLGLGEMGFTK--GG--GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNK   81 (375)
Q Consensus         8 ~~~~~~g~~~~~~--~~--~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK   81 (375)
                      .|||++-.+....  ..  -++-.=|||..-. .++.+.+.-+|.+|.|+||......+-..+-+.  ..+.|+|+++||
T Consensus        83 eRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~-~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK  161 (548)
T 3vqt_A           83 ERGISVTTSVMQFPYRDRVVNLLDTPGHQDFS-EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNK  161 (548)
T ss_dssp             -----CTTTEEEEEETTEEEEEECCCCGGGCS-HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HCCCcEeeceEEEEECCEEEEEEeCCCcHHHH-HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEec
Confidence            4566554444333  22  2244589996544 457788999999999999987665443333333  468999999999


Q ss_pred             CCCCC
Q 017187           82 KDLAN   86 (375)
Q Consensus        82 ~DL~~   86 (375)
                      +|...
T Consensus       162 ~Dr~~  166 (548)
T 3vqt_A          162 MDREA  166 (548)
T ss_dssp             TTSCC
T ss_pred             ccchh
Confidence            99864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.17  E-value=0.00035  Score=73.58  Aligned_cols=70  Identities=17%  Similarity=0.098  Sum_probs=35.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh-hccccccccc-ccccccCC------CCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK-TKRATVGP------LPGVTQDIAGFKIA-HRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k-~~~~~v~~------~pg~T~~~~~~~i~-~~~~~~liDTPGi~  204 (375)
                      ...+|+++|.+|+|||||+|+|+.. +....  .+. .....+.+      ..|+|.......+. .+..+.++||||..
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~--~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHK--IGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcc--cceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            4578999999999999999999852 11100  000 00011111      34556554432222 23358999999985


Q ss_pred             C
Q 017187          205 V  205 (375)
Q Consensus       205 ~  205 (375)
                      .
T Consensus        89 d   89 (691)
T 1dar_A           89 D   89 (691)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.15  E-value=2.2e-05  Score=79.65  Aligned_cols=99  Identities=18%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCCh--hhHHHHHH---HH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANP--NILNKWVR---HF   97 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~--~~~~~~~~---~~   97 (375)
                      +-..|||... ...+...+..+|++|+|+|+..+....... +... ..+.|+++++||+|+.+.  +.....+.   .+
T Consensus        55 ~iDTPGhe~f-~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~  133 (501)
T 1zo1_I           55 FLDTPGHAAF-TSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGIL  133 (501)
T ss_dssp             EECCCTTTCC-TTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCC
T ss_pred             EEECCCcHHH-HHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhh
Confidence            4458898432 122234467899999999998754433322 2222 457899999999999743  11111100   01


Q ss_pred             -hhC--CCcEEEEecCCccCHHHHHHHHHH
Q 017187           98 -DSC--KQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        98 -~~~--g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                       +..  ..+++++||+++.|+++|++++..
T Consensus       134 ~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          134 PEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence             011  247899999999999999998754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.13  E-value=0.0011  Score=59.56  Aligned_cols=87  Identities=7%  Similarity=-0.068  Sum_probs=58.3

Q ss_pred             HHhhhcCeEEEEEeCCCCCCC-CchhH---hhc------cCCCCEEEEEEcC-CCCChhhHHHHHHHHh----hCCCcEE
Q 017187           41 HRLKISDLVIEVRDSRIPLSS-AHPGL---QPQ------LSAKRRVIALNKK-DLANPNILNKWVRHFD----SCKQDYI  105 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~-~~~~l---~~~------~~~kp~IiVlNK~-DL~~~~~~~~~~~~~~----~~g~~vi  105 (375)
                      .+.+++|.||+|||+.+..-. .-.++   ...      ..+.|++|..||. |+.......+..+.+.    .....+.
T Consensus       121 ~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq  200 (227)
T 3l82_B          121 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ  200 (227)
T ss_dssp             HHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred             HHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEE
Confidence            568999999999999654211 11223   111      2467889889995 7754433444444442    2344688


Q ss_pred             EEecCCccCHHHHHHHHHHHHh
Q 017187          106 AINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       106 ~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+||.+|+|+.+-++||.+.+.
T Consensus       201 ~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          201 DTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             EEETTTCTTHHHHHHHHTTTTT
T ss_pred             EeECCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999876553

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.13  E-value=0.00016  Score=72.65  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|+|||||+|+|+.
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHH
Confidence            4568999999999999999999975

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.12  E-value=0.00037  Score=76.65  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=38.5

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccc--------cccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKT--------KRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG  202 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~--------~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG  202 (375)
                      ....++|+++|.+|+|||||+|+|.+....    .++.        .........|+|.+...+.+. ....+.++||||
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~----~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG  368 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAK----TYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG  368 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHH----HSCC---------------------CCSCEEEECSSCEEEEEECCC
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhcc----ccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence            345689999999999999999999862100    0000        001122356778776543333 234689999999


Q ss_pred             CC
Q 017187          203 VL  204 (375)
Q Consensus       203 i~  204 (375)
                      ..
T Consensus       369 He  370 (1289)
T 3avx_A          369 HA  370 (1289)
T ss_dssp             HH
T ss_pred             hH
Confidence            74

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.12  E-value=6.9e-05  Score=76.58  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=65.9

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHh--
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFD--   98 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~--   98 (375)
                      +-..|||-. ....+...+..+|++|+|+|+..+...........  ..+.|+++|+||+|+.+..  .....+..+.  
T Consensus        56 ~iDTPGhe~-f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~  134 (537)
T 3izy_P           56 FLDTPGHAA-FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVV  134 (537)
T ss_dssp             CEECSSSCC-TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSC
T ss_pred             EEECCChHH-HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhh
Confidence            445789832 12222345678999999999987654432222222  3578999999999997432  1111221111  


Q ss_pred             --hC--CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 --SC--KQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 --~~--g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                        ..  ..+++++||+++.|+++|++.+...+.
T Consensus       135 ~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          135 CEDYGGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             HHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence              11  236788999999999999999987764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.11  E-value=0.0014  Score=69.25  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=44.1

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      +-.-|||.. ....+...+..+|.+|+|+|+..........+.+.  ..+.|+++|+||+|+...
T Consensus        86 liDTPG~~d-f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVD-FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccc-hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence            445899964 33456678899999999999987654332222222  357899999999998753

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.09  E-value=0.0005  Score=72.44  Aligned_cols=62  Identities=23%  Similarity=0.262  Sum_probs=43.4

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~   87 (375)
                      +-.-|||.. -...+...+..+|.+|+|+|+..+.+.....+.+.  ..+.|+++|+||+|+...
T Consensus        79 liDTPG~~d-f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           79 IIDTPGHVD-FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             EECCCCCSS-CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             EEECcCCcc-hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence            345788843 22345677889999999999987655433322222  357899999999999754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.03  E-value=0.00057  Score=65.48  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~  206 (375)
                      +++++|.+|||||||++.+.+. ...      ......    +.|.......+...-.+.++||||-...
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~-~~~------~~~~~~----~~Tig~~~~~v~~~v~LqIWDTAGQErf   59 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHN-MQP------LDTLYL----ESTSNPSLEHFSTLIDLAVMELPGQLNY   59 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSC-CCS------GGGTTC----CCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred             CEEEECCCCCCHHHHHHHHHcC-CCC------Ccccee----cCeeeeeeEEEccEEEEEEEECCCchhc
Confidence            4789999999999999987641 000      001112    2232222112222235899999997654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.02  E-value=0.00089  Score=70.99  Aligned_cols=85  Identities=9%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             HHHh-hhcCeEEEEEeCCCCCCCCch-hHhhc--cCCCCEEEEEEcCCCCChhhH-HHHHH--HHh-hCC-CcEEEEecC
Q 017187           40 KHRL-KISDLVIEVRDSRIPLSSAHP-GLQPQ--LSAKRRVIALNKKDLANPNIL-NKWVR--HFD-SCK-QDYIAINAH  110 (375)
Q Consensus        40 ~~~l-~~~DlVI~VvDar~p~s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~~-~~~~~--~~~-~~g-~~vi~iSa~  110 (375)
                      .+.+ ..+|+|++|+|++.++...+. .+.+.  ..++|+|+|+||+|++++... ..+..  .+. ..+ ..++++||+
T Consensus       181 ~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~  260 (772)
T 3zvr_A          181 MQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK  260 (772)
T ss_dssp             HHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCE
T ss_pred             HHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccc
Confidence            3444 588999999999987776654 34443  346899999999999876432 12211  000 112 257789999


Q ss_pred             CccCHHHHHHHHHH
Q 017187          111 SRSSVQKLLELVEL  124 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~  124 (375)
                      ++.|+++|.+.+.+
T Consensus       261 ~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          261 DIDGKKDITAALAA  274 (772)
T ss_dssp             ESSSSEEHHHHHHH
T ss_pred             ccccchhHHHHHHH
Confidence            99999998888875

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.95  E-value=0.00038  Score=72.63  Aligned_cols=79  Identities=18%  Similarity=0.084  Sum_probs=54.1

Q ss_pred             HHhcccccceEEeeCC----CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEE
Q 017187            7 IKKGLGLGEMGFTKGG----GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALN   80 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~----~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlN   80 (375)
                      ..|||++-.+.....-    -++-.=|||..-. .++...+.-+|.+|.|+||......+-..+.+.  ..+.|+|+++|
T Consensus        49 reRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~-~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~IN  127 (638)
T 3j25_A           49 RQRGITIQTGITSFQWENTKVNIIDTPGHMDFL-AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFIN  127 (638)
T ss_dssp             HHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCE
T ss_pred             HhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEe
Confidence            3567765444333332    2234479996544 557889999999999999988766544444333  45789999999


Q ss_pred             cCCCCC
Q 017187           81 KKDLAN   86 (375)
Q Consensus        81 K~DL~~   86 (375)
                      |+|...
T Consensus       128 KmDr~~  133 (638)
T 3j25_A          128 KIDQNG  133 (638)
T ss_dssp             ECCSSS
T ss_pred             cccccc
Confidence            999753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.88  E-value=0.00057  Score=69.30  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .....|+++|.|||||||++|.|..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999984

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.82  E-value=0.00026  Score=62.63  Aligned_cols=86  Identities=22%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             ccchhHHHHHHHHHHHhhh----cCeEEEEEeCC-CCCCCC--chhHhhcc--------CCCCEEEEEEcCCCCChhhHH
Q 017187           27 WFPGHMAAATRAIKHRLKI----SDLVIEVRDSR-IPLSSA--HPGLQPQL--------SAKRRVIALNKKDLANPNILN   91 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~----~DlVI~VvDar-~p~s~~--~~~l~~~~--------~~kp~IiVlNK~DL~~~~~~~   91 (375)
                      ..|||.. ....+...+..    +|++|+|+|+. .+.+..  ...+.+..        .+.|+++|+||+|+.+.....
T Consensus        61 Dt~G~~~-~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B           61 DFPGHVK-LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             ECCCCGG-GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             ECCCcHH-HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence            4677632 11223344444    99999999998 432221  11222221        478999999999998654333


Q ss_pred             HHHHHH--------hhCCCcEEEEecCCcc
Q 017187           92 KWVRHF--------DSCKQDYIAINAHSRS  113 (375)
Q Consensus        92 ~~~~~~--------~~~g~~vi~iSa~~~~  113 (375)
                      .+.+.+        ...+..++.+|++++.
T Consensus       140 ~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~  169 (218)
T 1nrj_B          140 KIKDALESEIQKVIERRKKSLNEVERKINE  169 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            222211        1223345667777654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.81  E-value=0.00029  Score=64.36  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .....++++|.+||||||+++.|..
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHH
Confidence            4457889999999999999999973

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=96.78  E-value=0.0016  Score=68.80  Aligned_cols=24  Identities=13%  Similarity=0.032  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+|+|+|.+|+|||||++.|+.
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=96.76  E-value=0.00087  Score=72.16  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+|+|+|.+|+|||||+|+|+.
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~   41 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQ   41 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999986

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.76  E-value=0.0021  Score=55.94  Aligned_cols=88  Identities=14%  Similarity=0.048  Sum_probs=59.2

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      .....+|.+++|+|...+.+..+  ..+..+    ....|+++|+||+||.+...  ......+..+.+..++.+|++++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~  152 (199)
T 2f9l_A           73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS  152 (199)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            45678999999999876533221  111111    23578999999999964321  12233333455677888999999


Q ss_pred             cCHHHHHHHHHHHHhh
Q 017187          113 SSVQKLLELVELKLKE  128 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~  128 (375)
                      .+++++++.+.+.+..
T Consensus       153 ~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          153 TNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999998876644

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=96.75  E-value=0.00068  Score=70.14  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+++++|.+|+|||||+|+|+.
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~   28 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLE   28 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999986

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=96.74  E-value=0.00069  Score=70.11  Aligned_cols=67  Identities=21%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh-hhccccccccccccccc------CCCCCeeeeeEEEEE--c--cC--CcEEEEEcC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ-IALSRFPVQEKTKRATV------GPLPGVTQDIAGFKI--A--HR--PSIYVLDTP  201 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k~~~~~v------~~~pg~T~~~~~~~i--~--~~--~~~~liDTP  201 (375)
                      ..+++++|.+|+|||||+++|+. .|.+...    .....+      ....|.|.......+  .  .+  ..+.++|||
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~----~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTP   79 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDR----EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTP   79 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC------------------------------CEEEEEEECTTSCEEEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccc----cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECC
Confidence            45899999999999999999986 2222110    000111      113466665443222  2  11  247899999


Q ss_pred             CCCC
Q 017187          202 GVLV  205 (375)
Q Consensus       202 Gi~~  205 (375)
                      |...
T Consensus        80 Gh~d   83 (599)
T 3cb4_D           80 GHVD   83 (599)
T ss_dssp             CCGG
T ss_pred             CchH
Confidence            9854

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=96.73  E-value=0.00056  Score=62.78  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=23.4

Q ss_pred             cCCceEEEEEcCC---------CCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVP---------NVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~p---------nvGKSsliN~L~~  157 (375)
                      ....++|+++|.|         |||||||+|.|.+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            3556899999999         9999999999996

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.69  E-value=0.0025  Score=56.60  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=40.3

Q ss_pred             CCCEEEEEEcCCCCChh--hHHHHHHHHhh--CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           72 AKRRVIALNKKDLANPN--ILNKWVRHFDS--CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        72 ~kp~IiVlNK~DL~~~~--~~~~~~~~~~~--~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+|.++|+||+|+.+..  ..+...++++.  .+.+++.+|++++.|++++++.+.+.+.
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            35669999999996532  23333333332  3457899999999999999999877654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.69  E-value=0.0012  Score=64.08  Aligned_cols=76  Identities=5%  Similarity=-0.036  Sum_probs=40.0

Q ss_pred             CeEEEEEeC-CCCCCCCchhHhh-ccCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHHHHH
Q 017187           47 DLVIEVRDS-RIPLSSAHPGLQP-QLSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQKLLE  120 (375)
Q Consensus        47 DlVI~VvDa-r~p~s~~~~~l~~-~~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~Ll~  120 (375)
                      |++++++|. +.++...+..+.+ +..+.|+|+|+||+|+.+...+..    ..+.....+.+++.+|++++.+ ++.+.
T Consensus       147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~  225 (361)
T 2qag_A          147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFK  225 (361)
T ss_dssp             CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CH
T ss_pred             EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHH
Confidence            568888875 4444433222222 245689999999999987654433    3333444567888999998876 44443


Q ss_pred             HHH
Q 017187          121 LVE  123 (375)
Q Consensus       121 ~L~  123 (375)
                      .+.
T Consensus       226 ~l~  228 (361)
T 2qag_A          226 EQT  228 (361)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.62  E-value=0.00064  Score=66.90  Aligned_cols=47  Identities=28%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             CCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187           72 AKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL  118 (375)
Q Consensus        72 ~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L  118 (375)
                      .+|+++|+||+|+.....+..+.+.+...+.+++++||+.+.++.++
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L  260 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKA  260 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSC
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHH
Confidence            49999999999998544445555555434668999999988877664

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.58  E-value=0.0056  Score=57.52  Aligned_cols=87  Identities=7%  Similarity=-0.044  Sum_probs=59.3

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCC-chhHh---hc------cCCCCEEEEEEc-CCCCChhhHHHHHHHHh----hCCCcEE
Q 017187           41 HRLKISDLVIEVRDSRIPLSSA-HPGLQ---PQ------LSAKRRVIALNK-KDLANPNILNKWVRHFD----SCKQDYI  105 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~-~~~l~---~~------~~~kp~IiVlNK-~DL~~~~~~~~~~~~~~----~~g~~vi  105 (375)
                      .+.+++|.||+|||+.+..--. -.++.   ..      ..+.|++|..|| .|+.......+..+.+.    .....+.
T Consensus       206 ~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq  285 (312)
T 3l2o_B          206 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ  285 (312)
T ss_dssp             HHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred             HHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEE
Confidence            5689999999999996542211 11222   11      257899999997 58865433444444442    2234688


Q ss_pred             EEecCCccCHHHHHHHHHHHHh
Q 017187          106 AINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       106 ~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+||.+|+|+.+-++|+.+.+.
T Consensus       286 ~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          286 DTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             EEETTTCTTHHHHHHHHHHHSC
T ss_pred             ecccCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999987764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=96.49  E-value=0.00062  Score=65.92  Aligned_cols=88  Identities=14%  Similarity=0.010  Sum_probs=56.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCC------Cc--h----hHhhc-----cCCCCEEEEEEcCCCCChh---------------
Q 017187           41 HRLKISDLVIEVRDSRIPLSS------AH--P----GLQPQ-----LSAKRRVIALNKKDLANPN---------------   88 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~------~~--~----~l~~~-----~~~kp~IiVlNK~DL~~~~---------------   88 (375)
                      ...++++.||+|+|....-+.      .+  .    .+...     ..+.|+|+|+||+||....               
T Consensus       212 ~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g  291 (353)
T 1cip_A          212 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG  291 (353)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCS
T ss_pred             HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCC
Confidence            457899999999998753210      11  1    11111     2468999999999985211               


Q ss_pred             --hHHHHHHHHh-----------hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           89 --ILNKWVRHFD-----------SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        89 --~~~~~~~~~~-----------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                        ..++..+++.           ..+..++.+||+++.|++.+++++.+.+..
T Consensus       292 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          292 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence              1222333332           134467889999999999999988776643

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.49  E-value=0.0034  Score=66.21  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=46.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA   85 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~   85 (375)
                      +-.=|||..-. .++...++-+|.+|.|+||-.....+-..+.+.  ..+.|+++++||+|..
T Consensus        89 lIDTPGHvDF~-~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           89 VIDTPGHVDFT-IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EECCCSCTTCH-HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred             EEeCCCCcccH-HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence            45679997654 557889999999999999987766544444333  4579999999999975

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.49  E-value=0.0017  Score=57.62  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA  185 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~  185 (375)
                      .+-.++++|.+|||||||+|.|.+.          .........+.|||...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~----------~~~~~~~~vs~TTR~p~   59 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ----------NPEKFVYPVPYTTRPPR   59 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH----------CTTTEECCCCEECSCCC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh----------CCccEEeeecccccCCc
Confidence            4457889999999999999999972          11123445567787664

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.48  E-value=0.0035  Score=55.60  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....+++++|.+|||||||+|.|..
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4568899999999999999999986

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.39  E-value=0.0041  Score=65.15  Aligned_cols=25  Identities=24%  Similarity=0.297  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....+++++|.+|+|||||++.|.+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~   31 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLY   31 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHH
Confidence            3467899999999999999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.38  E-value=0.0074  Score=57.86  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh-hHHHHHHHHhh-----C------CCcEEEEec
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN-ILNKWVRHFDS-----C------KQDYIAINA  109 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~-~~~~~~~~~~~-----~------g~~vi~iSa  109 (375)
                      ..+.+|++++|+|+..+...  ..+.......+.++|+||+|+.+.. ......+.+..     .      ..+++++|+
T Consensus       165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sa  242 (337)
T 2qm8_A          165 VADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISG  242 (337)
T ss_dssp             HHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBT
T ss_pred             HHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeC
Confidence            35789999999998533110  1111111134668889999986532 22122222210     1      246889999


Q ss_pred             CCccCHHHHHHHHHHHHh
Q 017187          110 HSRSSVQKLLELVELKLK  127 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~  127 (375)
                      .++.|+++|.+.+.+...
T Consensus       243 l~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          243 LHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999987754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.32  E-value=0.00085  Score=65.20  Aligned_cols=88  Identities=11%  Similarity=0.034  Sum_probs=55.8

Q ss_pred             HHhhhcCeEEEEEeCCCCCC------CCch------hHhhc-----cCCCCEEEEEEcCCCCCh----------------
Q 017187           41 HRLKISDLVIEVRDSRIPLS------SAHP------GLQPQ-----LSAKRRVIALNKKDLANP----------------   87 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s------~~~~------~l~~~-----~~~kp~IiVlNK~DL~~~----------------   87 (375)
                      ..+++++.||+|+|....-.      +.+.      .+...     ..+.|+|+|+||+||...                
T Consensus       220 ~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g  299 (362)
T 1zcb_A          220 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEG  299 (362)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCS
T ss_pred             HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccC
Confidence            45789999999999875210      0111      11111     246899999999998521                


Q ss_pred             --hhHHHHHHHH----h-------hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           88 --NILNKWVRHF----D-------SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        88 --~~~~~~~~~~----~-------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                        ...++..+++    .       ..+..++.+||+++.+++.+++.+.+.+..
T Consensus       300 ~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          300 DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence              1122333332    1       123567889999999999999988776543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.30  E-value=0.0062  Score=60.69  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-..|.|+|.+++|||+|+|.|++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~   89 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLR   89 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHHH
Confidence            345677999999999999998864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.25  E-value=0.005  Score=54.39  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++.+.+.+.+.  ...+..++|+|.+|+|||||++.|.+
T Consensus         5 ~~~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            5 AALCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             HHHHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34555554444321  35677899999999999999999987

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.15  E-value=0.0068  Score=52.52  Aligned_cols=86  Identities=14%  Similarity=0.043  Sum_probs=56.7

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      .....+|.++.|+|...+.+..+  ..+..+    ....|+++|+||+||.+..  .......+..+.+..++.+|++++
T Consensus        97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~  176 (191)
T 1oix_A           97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS  176 (191)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            45678899999999865432111  112111    2357899999999996431  122233333455677888999999


Q ss_pred             cCHHHHHHHHHHHH
Q 017187          113 SSVQKLLELVELKL  126 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l  126 (375)
                      .+++++++.+.+.+
T Consensus       177 ~~v~~l~~~l~~~i  190 (191)
T 1oix_A          177 TNVEAAFQTILTEI  190 (191)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999887643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.13  E-value=0.0015  Score=65.00  Aligned_cols=23  Identities=17%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..++++|.|||||||+++.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.94  E-value=0.0058  Score=58.83  Aligned_cols=86  Identities=13%  Similarity=0.170  Sum_probs=52.4

Q ss_pred             HHHHHHhhhcCeEEEEEeCCC-CCCCCc-hhHhh-c-cCCCCEEEEEEcCCCCChhh-HHHHHHHH-hhCCCcEEEEecC
Q 017187           37 RAIKHRLKISDLVIEVRDSRI-PLSSAH-PGLQP-Q-LSAKRRVIALNKKDLANPNI-LNKWVRHF-DSCKQDYIAINAH  110 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~-p~s~~~-~~l~~-~-~~~kp~IiVlNK~DL~~~~~-~~~~~~~~-~~~g~~vi~iSa~  110 (375)
                      ..+...+.++|+||+|+|+.. ...... ..+.+ + ..++|.++|+||+|++++.. .....+.+ ...+..++.+++.
T Consensus       164 ~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~  243 (360)
T 3t34_A          164 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNR  243 (360)
T ss_dssp             HHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCC
T ss_pred             HHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEEC
Confidence            455677899999999998643 222111 12222 2 34679999999999986532 11212111 1234567889999


Q ss_pred             CccCHHHHHHHH
Q 017187          111 SRSSVQKLLELV  122 (375)
Q Consensus       111 ~~~gvk~Ll~~L  122 (375)
                      ++.++++.....
T Consensus       244 s~~~i~~~~~~~  255 (360)
T 3t34_A          244 SQADINKNVDMI  255 (360)
T ss_dssp             CHHHHHTTCCHH
T ss_pred             ChHHhccCCCHH
Confidence            888776654443

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.88  E-value=0.0019  Score=62.15  Aligned_cols=86  Identities=8%  Similarity=0.111  Sum_probs=52.9

Q ss_pred             HHHHhh-hcCeEEEEEeCCCCCCCCchh-Hhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHH--Hh-hCCC-cEEEEec
Q 017187           39 IKHRLK-ISDLVIEVRDSRIPLSSAHPG-LQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRH--FD-SCKQ-DYIAINA  109 (375)
Q Consensus        39 i~~~l~-~~DlVI~VvDar~p~s~~~~~-l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~--~~-~~g~-~vi~iSa  109 (375)
                      +...+. ..++|++|+|+..++...... +.+.  ..++|.++|+||+|+.++.. ...+.+.  +. ..++ .++.+|+
T Consensus       160 ~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA  239 (353)
T 2x2e_A          160 LMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ  239 (353)
T ss_dssp             HHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCH
T ss_pred             HHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCc
Confidence            334453 456777788887655544321 3332  34689999999999986533 2222211  00 1122 4667899


Q ss_pred             CCccCHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVEL  124 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~  124 (375)
                      +++.|++++.+.+..
T Consensus       240 ~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          240 KDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHTTCCHHHHHHH
T ss_pred             ccccccccHHHHHHH
Confidence            999999888888765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.73  E-value=0.0061  Score=52.59  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.||+|||||+|.|.+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999999987

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.70  E-value=0.0078  Score=62.38  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 017187          137 LVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      .++|+|.+|+|||||+|+|.+.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            4999999999999999999973

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.67  E-value=0.0071  Score=51.91  Aligned_cols=57  Identities=25%  Similarity=0.127  Sum_probs=35.4

Q ss_pred             HHhhhcCeEEEEEeCC-CCCCCCc--hhHhhcc--------CCCCEEEEEEcCCCCChhhHHHHHHHH
Q 017187           41 HRLKISDLVIEVRDSR-IPLSSAH--PGLQPQL--------SAKRRVIALNKKDLANPNILNKWVRHF   97 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar-~p~s~~~--~~l~~~~--------~~kp~IiVlNK~DL~~~~~~~~~~~~~   97 (375)
                      ..+..+|++|+|+|+. .+.+...  ..+..+.        .+.|+++|+||+|+.+........+.+
T Consensus       114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            4456699999999997 3211100  1122221        378999999999998765444444443

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.60  E-value=0.011  Score=60.50  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=40.2

Q ss_pred             HHHHHhhhcCeEEEEEeCCCC-CCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHH
Q 017187           38 AIKHRLKISDLVIEVRDSRIP-LSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHF   97 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p-~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~   97 (375)
                      .+...+..+|+||+|+|+..+ .......+.+.  ..+.|+++|+||+|++++..+....+.+
T Consensus       181 ~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l  243 (550)
T 2qpt_A          181 VLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL  243 (550)
T ss_dssp             HHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence            345678899999999999764 22222222222  2357899999999999876655544433

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=95.52  E-value=0.0045  Score=59.23  Aligned_cols=116  Identities=12%  Similarity=0.028  Sum_probs=66.1

Q ss_pred             cccceEEeeCCCcc-cc-cchhHHHHHHHHHHHhhhcCeEEEEEeCCC------CCCCCch------hHhhc-----cCC
Q 017187           12 GLGEMGFTKGGGNI-NW-FPGHMAAATRAIKHRLKISDLVIEVRDSRI------PLSSAHP------GLQPQ-----LSA   72 (375)
Q Consensus        12 ~~g~~~~~~~~~~~-~w-fpgHm~k~~~~i~~~l~~~DlVI~VvDar~------p~s~~~~------~l~~~-----~~~   72 (375)
                      |+....+.....+. -| ..|+ .+-.+......++++.||+|+|...      ..++.+.      .+...     ..+
T Consensus       156 Gi~~~~~~~~~v~l~iwDtgGQ-e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~  234 (327)
T 3ohm_A          156 GIIEYPFDLQSVIFRMVDVGGQ-RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  234 (327)
T ss_dssp             SEEEEEEEETTEEEEEEEECCS-HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             eEEEEEEEeeceeeEEEEcCCc-hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence            33444444444332 23 3344 2222333346789999999997641      1112221      11211     246


Q ss_pred             CCEEEEEEcCCCCChh------------------hHHHHHHHH----h------hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           73 KRRVIALNKKDLANPN------------------ILNKWVRHF----D------SCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        73 kp~IiVlNK~DL~~~~------------------~~~~~~~~~----~------~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      .|+++++||+||....                  ..++..+|+    .      +.+..++.+||++..+++.+...+.+
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            8999999999985321                  122333332    1      12345678899999999999998887


Q ss_pred             HHhh
Q 017187          125 KLKE  128 (375)
Q Consensus       125 ~l~~  128 (375)
                      .+-.
T Consensus       315 ~Il~  318 (327)
T 3ohm_A          315 TILQ  318 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=95.52  E-value=0.0056  Score=58.84  Aligned_cols=115  Identities=17%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             ccccceEEeeCCCcc-cc-cchhHHHHHHHHHHHhhhcCeEEEEEeCCCC------CCCCch------hHhhc-----cC
Q 017187           11 LGLGEMGFTKGGGNI-NW-FPGHMAAATRAIKHRLKISDLVIEVRDSRIP------LSSAHP------GLQPQ-----LS   71 (375)
Q Consensus        11 ~~~g~~~~~~~~~~~-~w-fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p------~s~~~~------~l~~~-----~~   71 (375)
                      +|+....+.....+. -| ..|+ .+-........+.++.||+|+|...-      ....+.      .+...     ..
T Consensus       149 iGi~~~~~~~~~v~l~iwDtaGQ-e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~  227 (340)
T 4fid_A          149 TGIHEYDFVVKDIPFHLIDVGGQ-RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK  227 (340)
T ss_dssp             CSCEEEEEESSSCEEEEEECCSC-HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred             eeeEEEEEEeeeeeeccccCCCc-ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence            444455555544332 23 4455 33333344568999999999998620      011111      11111     25


Q ss_pred             CCCEEEEEEcCCCCChh-----------------hHHHHH----HHH------hh-----------------CCCcEEEE
Q 017187           72 AKRRVIALNKKDLANPN-----------------ILNKWV----RHF------DS-----------------CKQDYIAI  107 (375)
Q Consensus        72 ~kp~IiVlNK~DL~~~~-----------------~~~~~~----~~~------~~-----------------~g~~vi~i  107 (375)
                      +.|+++++||+||....                 ..++..    +.|      ..                 ....++.+
T Consensus       228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~T  307 (340)
T 4fid_A          228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPT  307 (340)
T ss_dssp             TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEE
T ss_pred             CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEE
Confidence            68999999999985321                 112222    222      10                 12345678


Q ss_pred             ecCCccCHHHHHHHHHHHH
Q 017187          108 NAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~~l  126 (375)
                      ||++..+++.++..+.+.+
T Consensus       308 sA~dt~nv~~vF~~v~~~I  326 (340)
T 4fid_A          308 NATDGSNIKRVFMLAVDVI  326 (340)
T ss_dssp             CTTCHHHHHHHHHHHHHHH
T ss_pred             EeeCcHHHHHHHHHHHHHH
Confidence            9999999988888776654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.52  E-value=0.0069  Score=53.23  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -.++|+|.+|+|||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999987

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=95.49  E-value=0.0073  Score=58.39  Aligned_cols=87  Identities=15%  Similarity=0.054  Sum_probs=52.8

Q ss_pred             HHhhhcCeEEEEEeCCC------CCCCCc--h----hHhhc-----cCCCCEEEEEEcCCCCChh---------------
Q 017187           41 HRLKISDLVIEVRDSRI------PLSSAH--P----GLQPQ-----LSAKRRVIALNKKDLANPN---------------   88 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~------p~s~~~--~----~l~~~-----~~~kp~IiVlNK~DL~~~~---------------   88 (375)
                      ...++++.+|+|+|...      .....+  .    .+...     ..+.|+++|+||+||....               
T Consensus       202 ~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y  281 (354)
T 2xtz_A          202 HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY  281 (354)
T ss_dssp             GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTC
T ss_pred             HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccccccccc
Confidence            35689999999999751      001111  1    11111     2468999999999984211               


Q ss_pred             --------hHHHHHHHHhh----------------CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           89 --------ILNKWVRHFDS----------------CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        89 --------~~~~~~~~~~~----------------~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                              ..++..+++.+                ....++.+||+++.+++++++.+.+.+.
T Consensus       282 ~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~  344 (354)
T 2xtz_A          282 QPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR  344 (354)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence                    01222222211                1223578999999999999998876654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.46  E-value=0.008  Score=52.12  Aligned_cols=21  Identities=33%  Similarity=0.735  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++++|.+|+|||||++.|.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999997

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.42  E-value=0.0082  Score=52.67  Aligned_cols=20  Identities=25%  Similarity=0.587  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      |+|+|.|||||+||++.|+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999986

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.40  E-value=0.01  Score=51.14  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.||+|||||++.|.+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999999986

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=95.24  E-value=0.011  Score=56.59  Aligned_cols=83  Identities=11%  Similarity=0.049  Sum_probs=50.0

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhhH--------HHHHHHHhh-----
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNIL--------NKWVRHFDS-----   99 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~~--------~~~~~~~~~-----   99 (375)
                      ....+.++.+|+|+|+...+......+.++       ..+.|+++|.||+||.+++..        .+..+.+.+     
T Consensus        67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~  146 (331)
T 3r7w_B           67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG  146 (331)
T ss_dssp             HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred             hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence            356789999999999987621111122111       246899999999999875321        111122323     


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVE  123 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~  123 (375)
                      .+..++.+|+++ .++.+....+.
T Consensus       147 ~~i~f~eTSAkd-~nV~eAFs~iv  169 (331)
T 3r7w_B          147 VQVSFYLTSIFD-HSIYEAFSRIV  169 (331)
T ss_dssp             CCEEEECCCSSS-SHHHHHHHHHH
T ss_pred             cCceEEEeccCC-CcHHHHHHHHH
Confidence            234667789987 45666554443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.13  E-value=0.013  Score=50.93  Aligned_cols=23  Identities=17%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            44689999999999999999997

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.03  E-value=0.014  Score=51.39  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      .+-.++++|.+|+|||||+|.|.+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3457899999999999999999973

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.01  E-value=0.012  Score=51.76  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.|||||||+.+.|..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            455689999999999999999986

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.92  E-value=0.037  Score=51.84  Aligned_cols=43  Identities=19%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhhh--hccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          115 VQKLLELVELKLKEV--ISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~--~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.+++.|.+.+...  .....+..|+|+|.+|+|||||.+.|.+
T Consensus         9 ~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A            9 LDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            444555554444332  2235678899999999999999999986

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.90  E-value=0.016  Score=52.07  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++|+|.+|+|||||++.|.+
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            455789999999999999999997

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.88  E-value=0.036  Score=48.47  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.+|+||||+.+.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999986

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=94.87  E-value=0.02  Score=56.28  Aligned_cols=87  Identities=13%  Similarity=0.067  Sum_probs=53.4

Q ss_pred             HHhhhcCeEEEEEeCCCC---C---CCCch------hHhhc-----cCCCCEEEEEEcCCCCChhh--------------
Q 017187           41 HRLKISDLVIEVRDSRIP---L---SSAHP------GLQPQ-----LSAKRRVIALNKKDLANPNI--------------   89 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p---~---s~~~~------~l~~~-----~~~kp~IiVlNK~DL~~~~~--------------   89 (375)
                      ...++++.||+|+|...-   +   .+.+.      .+...     ..+.|+++|+||+||.....              
T Consensus       236 ~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y  315 (402)
T 1azs_C          236 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEF  315 (402)
T ss_dssp             GGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGG
T ss_pred             hhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccc
Confidence            457899999999998750   0   01111      11111     24679999999999843211              


Q ss_pred             ------------------HHHHHHH----Hhh---------CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           90 ------------------LNKWVRH----FDS---------CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        90 ------------------~~~~~~~----~~~---------~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                                        .+....|    |.+         .+..++.+||+++.+++.++..+.+.+.
T Consensus       316 ~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~  384 (402)
T 1azs_C          316 ARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ  384 (402)
T ss_dssp             GTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence                              1111122    111         1334568899999999999998876654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.87  E-value=0.017  Score=50.16  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      .+..++++|.||+||||+++.|.+.
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999999873

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.83  E-value=0.014  Score=52.11  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++|+|.+|+|||||++.|.+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            344689999999999999999997

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.77  E-value=0.027  Score=48.14  Aligned_cols=42  Identities=21%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++.++.+...+... ....+-.++++|.||+|||||++++.+
T Consensus        19 ~~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           19 QNRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             HHHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHH
Confidence            445555565555432 112345789999999999999999986

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.73  E-value=0.013  Score=57.93  Aligned_cols=81  Identities=10%  Similarity=0.069  Sum_probs=38.3

Q ss_pred             cCeEEEEEeCC-CCCCCCch-hHhhccCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHHHH
Q 017187           46 SDLVIEVRDSR-IPLSSAHP-GLQPQLSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQKLL  119 (375)
Q Consensus        46 ~DlVI~VvDar-~p~s~~~~-~l~~~~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~Ll  119 (375)
                      +++||++.++. ..+...+. .+..+..+.++|+|+||+|+.++..+..    ..+.+...+.+++.+|+.++.++.++.
T Consensus       139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~  218 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  218 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------
T ss_pred             eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHH
Confidence            45566666553 33433222 2233345789999999999987654433    333444457778888998888887765


Q ss_pred             HHHHHHH
Q 017187          120 ELVELKL  126 (375)
Q Consensus       120 ~~L~~~l  126 (375)
                      ..+...+
T Consensus       219 ~~l~~~i  225 (418)
T 2qag_C          219 KKIKDRL  225 (418)
T ss_dssp             ------C
T ss_pred             HHHHhhC
Confidence            5554443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=94.73  E-value=0.019  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.+|+|||||++.|.+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHh
Confidence            455789999999999999999987

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.66  E-value=0.021  Score=53.71  Aligned_cols=57  Identities=9%  Similarity=0.003  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEEcCCCCChhhHH----HHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           70 LSAKRRVIALNKKDLANPNILN----KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        70 ~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ....++++|+||+|+..+....    ...++.+..+..++.+|++++ ++++++..+.+.+.
T Consensus       153 ~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          153 HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence            3456899999999998754332    333444556778889999999 99998877766654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.65  E-value=0.021  Score=49.99  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.+|+|||||++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999987

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.60  E-value=0.022  Score=48.12  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..|+++|.||+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999985

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.56  E-value=0.027  Score=47.77  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.||+||||+.+.|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999976

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.52  E-value=0.022  Score=49.69  Aligned_cols=24  Identities=33%  Similarity=0.619  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.||+||||+.+.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999986

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=94.47  E-value=0.01  Score=63.84  Aligned_cols=60  Identities=22%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA   85 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~   85 (375)
                      +-.-|||.. ....+...+..+|.+|+|+|+..+.+.....+...  ..+.|+++|+||+|+.
T Consensus       102 liDTPG~~d-f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          102 LIDSPGHVD-FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EECCCCCCS-SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             EEECcCchh-hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            445788854 23356678899999999999987765443332222  4578999999999986

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.47  E-value=0.027  Score=49.14  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.||+||||+.+.|.+
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999986

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.43  E-value=0.021  Score=48.18  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++|.||+||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999986

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.43  E-value=0.023  Score=49.13  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++|.+|+|||||++.|.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3588999999999999999986

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.42  E-value=0.021  Score=47.67  Aligned_cols=21  Identities=24%  Similarity=0.623  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 017187          136 LLVMVVGVPNVGKSALINSIH  156 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~  156 (375)
                      ..|+++|.||+||||+.+.|.
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L~   22 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLLK   22 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999993

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.41  E-value=0.028  Score=48.17  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..|+++|.||+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999975

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.35  E-value=0.026  Score=48.59  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++|.+|+|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999985

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.34  E-value=0.025  Score=47.93  Aligned_cols=22  Identities=18%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..|+++|.||+||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.33  E-value=0.025  Score=47.42  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+++|.||+||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999975

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.26  E-value=0.049  Score=45.82  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....++++|.||+|||++++.+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999986

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.15  E-value=0.031  Score=47.72  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.+..
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc
Confidence            345689999999999999998653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.14  E-value=0.054  Score=50.48  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.||+||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999975

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.12  E-value=0.029  Score=53.04  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      .++-.++|+|.+|+|||||++.|.+.
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            34567999999999999999999973

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.06  E-value=0.029  Score=50.81  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            344689999999999999999997

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.04  E-value=0.031  Score=47.68  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..|+|.|.||+||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999986

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.03  E-value=0.026  Score=50.71  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34688999999999999999997

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.01  E-value=0.035  Score=47.42  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.||+||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999975

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.99  E-value=0.036  Score=51.02  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+-.++|+|.+|+|||||++.|.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH
Confidence            4566899999999999999999987

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.99  E-value=0.033  Score=47.52  Aligned_cols=21  Identities=33%  Similarity=0.776  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+|.|.||+||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999986

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=93.94  E-value=0.027  Score=58.66  Aligned_cols=68  Identities=19%  Similarity=0.142  Sum_probs=38.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh-hhccccccccc-ccccccCCCC------CeeeeeEEEE-EccCCcEEEEEcCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQ-IALSRFPVQEK-TKRATVGPLP------GVTQDIAGFK-IAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k-~~~~~v~~~p------g~T~~~~~~~-i~~~~~~~liDTPGi~~~  206 (375)
                      +|+|+|....|||||..+|+- .|.+...  |+ ....++.+.-      |.|....... .+.+..+.||||||-..+
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~--g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITEL--GSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSC--SSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccc--cccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence            689999999999999999874 3333211  00 0111122111      4444333111 123346889999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.86  E-value=0.033  Score=50.47  Aligned_cols=24  Identities=38%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999997

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.78  E-value=0.036  Score=47.85  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+++|.||+||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999986

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.78  E-value=0.019  Score=49.44  Aligned_cols=21  Identities=29%  Similarity=0.621  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+|.+|+|||||++.|.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999987

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.77  E-value=0.043  Score=47.64  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..|++.|.||+||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999986

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.77  E-value=0.038  Score=50.21  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            445789999999999999999997

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.76  E-value=0.037  Score=49.91  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 017187          135 TLLVMVVGVPNVGKSALINSIH  156 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~  156 (375)
                      +..++|+|.||+||||+++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.76  E-value=0.036  Score=50.43  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -.++++|.+|+|||||++.|.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            3688999999999999999997

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.75  E-value=0.04  Score=48.02  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++|.||+||||+.+.|.+
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999985

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.71  E-value=0.043  Score=51.95  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=23.4

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+..++|+|.+|+|||||++.|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            35678899999999999999999987

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.69  E-value=0.053  Score=49.32  Aligned_cols=25  Identities=12%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.||+||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999976

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=93.64  E-value=0.037  Score=48.19  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...|+++|.||+||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999976

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.64  E-value=0.052  Score=46.56  Aligned_cols=25  Identities=24%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.||+||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999999999975

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.63  E-value=0.037  Score=48.41  Aligned_cols=21  Identities=38%  Similarity=0.683  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++|.+|+|||||++.|.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            488999999999999999987

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.62  E-value=0.043  Score=48.51  Aligned_cols=24  Identities=17%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..|+++|.||+||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999975

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.61  E-value=0.041  Score=48.58  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++++|.||+||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.60  E-value=0.038  Score=50.85  Aligned_cols=24  Identities=21%  Similarity=0.428  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999997

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.55  E-value=0.05  Score=47.54  Aligned_cols=25  Identities=28%  Similarity=0.585  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..++++|.||+||||+.+.|.+
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999999986

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.55  E-value=0.038  Score=49.14  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 017187          137 LVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      .++++|.+|+|||||++.|.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999984

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.54  E-value=0.048  Score=47.22  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..|++.|.||+||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999999986

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.52  E-value=0.042  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999997

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.50  E-value=0.042  Score=47.81  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+|+|.+|+||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999986

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.45  E-value=0.047  Score=47.56  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..|++.|.||+||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999999985

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.44  E-value=0.041  Score=50.18  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            44689999999999999999997

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.44  E-value=0.058  Score=45.75  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+-.++++|..|+|||||++.|.+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4455789999999999999999997

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.44  E-value=0.03  Score=49.95  Aligned_cols=24  Identities=13%  Similarity=0.342  Sum_probs=16.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH-h
Q 017187          134 PTLLVMVVGVPNVGKSALINSIH-Q  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~-~  157 (375)
                      .+-.++++|.+|+|||||++.|. +
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~   50 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEK   50 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            34578999999999999999999 7

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.44  E-value=0.038  Score=51.33  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            34689999999999999999997

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.44  E-value=0.049  Score=47.48  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..|++.|.||+||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999985

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.43  E-value=0.043  Score=50.47  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344789999999999999999997

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.43  E-value=0.037  Score=49.47  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -.++++|.+|+|||||++.|.+
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999999997

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.43  E-value=0.041  Score=50.42  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999997

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.42  E-value=0.037  Score=51.09  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            34689999999999999999997

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.40  E-value=0.097  Score=48.36  Aligned_cols=20  Identities=30%  Similarity=0.652  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++|.||+|||||+++|.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999987

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.39  E-value=0.048  Score=50.31  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344689999999999999999997

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.38  E-value=0.044  Score=50.58  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHc
Confidence            344689999999999999999997

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.36  E-value=0.054  Score=46.28  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..|+++|.||+||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.32  E-value=0.055  Score=47.01  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..|+++|.||+||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5567899999999999999999975

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.31  E-value=0.055  Score=46.52  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.||+||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999986

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.30  E-value=0.046  Score=50.61  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999997

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.30  E-value=0.045  Score=49.27  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44689999999999999999997

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=93.28  E-value=0.06  Score=45.85  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.+|+||||+.+.|.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999986

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.27  E-value=0.07  Score=44.83  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....+++.|.||+|||+++..+..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999986

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.26  E-value=0.1  Score=49.53  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++.++++|.+|+|||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35577899999999999999999986

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.22  E-value=0.055  Score=47.16  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIA  159 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g  159 (375)
                      ..++++|.+|+||||+.+.|.+.|
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~lg   26 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDLG   26 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHCC
Confidence            468999999999999999998643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.20  E-value=0.057  Score=46.34  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..|+++|.||+||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999975

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.19  E-value=0.049  Score=50.02  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	375
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	5e-35
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-07
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-04
d1u0la2	225	c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C	4e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	7e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.001
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.002
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.002
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.004
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	0.004

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score =  127 bits (320), Expect = 5e-35
 Identities = 70/242 (28%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 31  HMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNIL 90
           HMA A R +  +LK+ D+V E+ D+RIP+SS +P ++  L  K R++ LNK D A+  + 
Sbjct: 1   HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVT 60

Query: 91  NKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLLVMVVGV 143
            +W  HF++     ++IN+ +   + +++   +        +++    +   +  +++G+
Sbjct: 61  QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGI 120

Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
           PNVGKS LIN +            K   A  G  PG+T      K+     + +LDTPG+
Sbjct: 121 PNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGKE--LELLDTPGI 167

Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSE 263
           L P   D   GL+LA++G+IKDS++  + +A + L  L     P   +      E+ +  
Sbjct: 168 LWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLE-EHYPERLKERYGLDEIPEDI 226

Query: 264 TE 265
            E
Sbjct: 227 AE 228

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 14/125 (11%)

Query: 95  RHFDSCKQDYIAINAHSRSSVQKLLELVEL-----KLKEVISR--EPTLLVMVVGVPNVG 147
            +F         I+    + ++  +    +      + + +       L V V G    G
Sbjct: 9   GYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSG 68

Query: 148 KSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207
           KS+ IN++  I         + + A    +  VT +   +K  + P++   D PG+   +
Sbjct: 69  KSSFINTLRGI-------GNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN 121

Query: 208 IPDIE 212
            P   
Sbjct: 122 FPPDT 126

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 102 QDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALS 161
           +++  IN  + ++  KLLEL+   LK+      T  ++V+G   VGKS+ +NSI      
Sbjct: 2   REWSGINTFAPATQTKLLELLG-NLKQEDVNSLT--ILVMGKGGVGKSSTVNSII----- 53

Query: 162 RFPVQEKTKRATVGPLPGVTQD-IAGFKIAHRPSIYVLDTPGVLVPSIPDIET 213
                   +  ++ P        +   +     ++ ++DTPG++     +   
Sbjct: 54  ------GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMA 100

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 15/65 (23%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
           ++  G  NVGKS LI  +              K+   G  PGVT+           +  +
Sbjct: 3   IIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRK---IIEIEWKNHKI 47

Query: 198 LDTPG 202
           +D PG
Sbjct: 48  IDMPG 52

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 15/150 (10%)

Query: 76  VIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT 135
           V+ +NK DL + + L K     +     Y  +   +++ +        LK          
Sbjct: 45  VMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK---------G 95

Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
            +  + G+  VGKS+L+N+I+         + +    +     G         +      
Sbjct: 96  KISTMAGLSGVGKSSLLNAINPGL------KLRVSEVSEKLQRGRHTTTTAQLLKFDFGG 149

Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKD 225
           YV+DTPG     I DIE            D
Sbjct: 150 YVVDTPGFANLEINDIEPEELKHYFKEFGD 179

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIY 196
           V +VG PN GKS+L+ ++            +                 G  +++      
Sbjct: 4   VGLVGYPNAGKSSLLAAMT-----------RAHPKIAPYPFTTLSPNLGVVEVSEEERFT 52

Query: 197 VLDTPGVLVPSIPDIETGLK 216
           + D PG++  +      GL+
Sbjct: 53  LADIPGIIEGASEGKGLGLE 72

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIY 196
           +++VG PNVGKS L+N +               RA V  +PG T+D+   +I  R     
Sbjct: 3   MVIVGKPNVGKSTLLNRLL-----------NEDRAIVTDIPGTTRDVISEEIVIRGILFR 51

Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
           ++DT GV   +   +E          I+ + +
Sbjct: 52  IVDTAGVRSETNDLVERLGIERTLQEIEKADI 83

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 11/47 (23%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI 184
           V++VG PNVGKS L N +            K K+A V    GVT+D 
Sbjct: 3   VLIVGRPNVGKSTLFNKLV-----------KKKKAIVEDEEGVTRDP 38

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIY 196
           V +VG P+VGKS L++ +              K               G        S  
Sbjct: 4   VGLVGFPSVGKSTLLSVVS-----------SAKPKIADYHFTTLVPNLGMVETDDGRSFV 52

Query: 197 VLDTPGVLVPSIPDIETGLK 216
           + D PG++  +   +  G +
Sbjct: 53  MADLPGLIEGAHQGVGLGHQ 72

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 11/46 (23%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
           V +VG PNVGKS L+N++              K A + P P  T+ 
Sbjct: 8   VAIVGKPNVGKSTLLNNLL-----------GVKVAPISPRPQTTRK 42

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 13/66 (19%)

Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSI 195
           + +VG PNVGKS L+N +              K +        T+             +I
Sbjct: 8   IAIVGRPNVGKSTLLNKLL-----------GQKISITSRKAQTTRHRIVGIHTEGAYQAI 56

Query: 196 YVLDTP 201
           YV    
Sbjct: 57  YVDTPG 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	375
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	100.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.91
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.89
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.23
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.23
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.14
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.01
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.0
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.97
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.88
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.86
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.86
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.81
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.77
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.75
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.71
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.69
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.66
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.65
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.65
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.63
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.62
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.59
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.54
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.54
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.52
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.5
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.46
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.41
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.37
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.35
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.32
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.31
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.3
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.28
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.25
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.25
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.22
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.21
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.2
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.19
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.19
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.17
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.17
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.15
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.13
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.12
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.1
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.09
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.09
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.08
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.08
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.05
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.02
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.99
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.94
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.91
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.9
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.89
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.89
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.89
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.85
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.85
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.82
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.81
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.8
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.77
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.74
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.73
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.72
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.72
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.71
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.69
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.69
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.69
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.66
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.65
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.65
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.64
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.64
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.61
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.59
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.55
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.54
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.54
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.52
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.48
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.48
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.45
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.38
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.37
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.34
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.32
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.32
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.31
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.22
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.12
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.05
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.04
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.03
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.94
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.92
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.9
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.85
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.74
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.68
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.63
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.44
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.4
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.37
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.31
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.29
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.26
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.1
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.07
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.05
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.97
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.89
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.59
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.58
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.55
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.47
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.42
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.4
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.3
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.25
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.21
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.13
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.01
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.96
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.84
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.78
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.78
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.76
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.76
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.74
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.7
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.66
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.66
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.64
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.61
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.57
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.53
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.53
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.5
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.5
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.49
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.41
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.41
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.29
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.28
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.22
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.21
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.14
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.14
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.11
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.06
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.0
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.85
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.79
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.77
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.73
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.67
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.64
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.56
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.5
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.48
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.41
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.39
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.35
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.22
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.17
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.17
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.13
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.09
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.06
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.03
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.01
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.98
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.86
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.76
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.6
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	92.55
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.54
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.5
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.22
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.08
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.06
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.03
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.97
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.8
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.79
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.78
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	91.36
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.33
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.26
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	91.22
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.57
d1vmaa2	213	GTPase domain of the signal recognition particle r	89.94
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.83
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	89.81
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	89.69
d2qy9a2	211	GTPase domain of the signal recognition particle r	89.65
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.54
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	89.21
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.1
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	88.74
d1okkd2	207	GTPase domain of the signal recognition particle r	88.63
d1j8yf2	211	GTPase domain of the signal sequence recognition p	88.05
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	87.78
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	87.55
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	87.52
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	87.49
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	87.15
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	87.1
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	86.94
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	86.69
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	86.57
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	86.47
d1ls1a2	207	GTPase domain of the signal sequence recognition p	86.35
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.29
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	85.87
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	85.63
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	85.55
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.5
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	84.87
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.64
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	84.43
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.39
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	84.34
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	83.94
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	83.42
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	83.37
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	83.03
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	82.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	82.63
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	82.5
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.78
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	80.94
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	80.42

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.6e-53  Score=400.23  Aligned_cols=265  Identities=29%  Similarity=0.447  Sum_probs=217.7

Q ss_pred             hHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecC
Q 017187           31 HMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAH  110 (375)
Q Consensus        31 Hm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~  110 (375)
                      ||+++++++++.++.+|+||+|+|||+|++++++.++++..+||+|+|+||+||++++..+.|.++|++.+..++++|+.
T Consensus         1 Hm~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           1 HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecc
Confidence            99999999999999999999999999999999999999988999999999999999999999999998777889999999


Q ss_pred             CccCHHHHHHHHHHHHhhh-------hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeee
Q 017187          111 SRSSVQKLLELVELKLKEV-------ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD  183 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~~-------~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~  183 (375)
                      ++.+...+.+.+.+.+.+.       ......++++|||+||||||||||+|++           .+++.|++.||+||+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~-----------~~~~~~~~~pG~Tr~  149 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK-----------KNIAKTGDRPGITTS  149 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHT-----------SCCC-----------
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhc-----------cceEEECCccccccc
Confidence            9988877777666555432       2345689999999999999999999997           577899999999999


Q ss_pred             eEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccccccccc
Q 017187          184 IAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSE  263 (375)
Q Consensus       184 ~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~  263 (375)
                      .+++++.  ++++++||||++.|...+++.+.++|++++|++..++.+.+++|++.+++.......+     ..+++   
T Consensus       150 ~~~i~~~--~~~~l~DTPGi~~p~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~-----~~~~~---  219 (273)
T d1puja_         150 QQWVKVG--KELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLK-----ERYGL---  219 (273)
T ss_dssp             -CCEEET--TTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHH-----HHTTC---
T ss_pred             ceEEECC--CCeEEecCCCccccCCccHHHHhhhhhcCCcchhhcchhhHHHHHHHHHHHhChHhhh-----HhcCC---
Confidence            9987664  4699999999999999999999999999999999999999999999999874432211     11111   


Q ss_pred             ccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCCCcchHH
Q 017187          264 TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEA  343 (375)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  343 (375)
                                                                    +....+..+|++.+|+++|++.++| .||     
T Consensus       220 ----------------------------------------------~~~~~d~~~~l~~ia~~~g~~~kgg-~~D-----  247 (273)
T d1puja_         220 ----------------------------------------------DEIPEDIAELFDAIGEKRGCLMSGG-LIN-----  247 (273)
T ss_dssp             ----------------------------------------------SSCCSSHHHHHHHHHHHHTCBCSTT-CBC-----
T ss_pred             ----------------------------------------------CCCCCCHHHHHHHHHHHhCCcccCC-ccC-----
Confidence                                                          1123467789999999999999876 465     


Q ss_pred             HHHHHHHHHHHhhCCCCCCeecccC
Q 017187          344 RLMVSKKFLTLFRTGKLGPFILDDV  368 (375)
Q Consensus       344 ~~~aa~~~l~~~r~G~lg~~~ld~~  368 (375)
                      +++||+.||+|||+|+||+||||.+
T Consensus       248 ~~~aa~~~l~d~r~G~lg~~~ld~P  272 (273)
T d1puja_         248 YDKTTEVIIRDIRTEKFGRLSFEQP  272 (273)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCCSCCC
T ss_pred             HHHHHHHHHHHHHcCCCceeeccCC
Confidence            8999999999999999999999953

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.2e-24  Score=196.52  Aligned_cols=148  Identities=24%  Similarity=0.265  Sum_probs=107.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--hCCCcEEEEecCCcc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD--SCKQDYIAINAHSRS  113 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~--~~g~~vi~iSa~~~~  113 (375)
                      ..++|+|.++.|+.+..|..+. ..+.++     ..+.+.++|+||+||++++..+.|.+.+.  ..+++++.+|++++.
T Consensus         6 P~vANiD~vliV~s~~~P~~~~-~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~   84 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGM   84 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             CCcccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccch
Confidence            3578999999999998876543 456665     36899999999999998776655554432  456789999999999


Q ss_pred             CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh-----hhcccccccccccccccCCCCCeeeeeEEEE
Q 017187          114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ-----IALSRFPVQEKTKRATVGPLPGVTQDIAGFK  188 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~-----~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~  188 (375)
                      |++.|.+.+.           +.+.+++|.||||||||||+|.+     +|.++.         ..+.-..||+..+.+.
T Consensus        85 g~~~L~~~l~-----------~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~---------~~~rGrHTTt~~~l~~  144 (225)
T d1u0la2          85 GIEELKEYLK-----------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE---------KLQRGRHTTTTAQLLK  144 (225)
T ss_dssp             THHHHHHHHS-----------SSEEEEECSTTSSHHHHHHHHSTTCCCC----------------------CCCSCCEEE
T ss_pred             hHhhHHHHhc-----------CCeEEEECCCCCCHHHHHHhhcchhhhhccCccc---------ccCCCCccccceeEEE
Confidence            9999877763           23689999999999999999986     222221         1122234677777777


Q ss_pred             EccCCcEEEEEcCCCCCCCCCCh
Q 017187          189 IAHRPSIYVLDTPGVLVPSIPDI  211 (375)
Q Consensus       189 i~~~~~~~liDTPGi~~~~~~~~  211 (375)
                      +..  +.+++|||||.+..+...
T Consensus       145 l~~--gg~iiDTPG~r~~~l~~~  165 (225)
T d1u0la2         145 FDF--GGYVVDTPGFANLEINDI  165 (225)
T ss_dssp             CTT--SCEEESSCSSTTCCCCSS
T ss_pred             ECC--CcEEEeCCcccccccccc
Confidence            754  479999999998887653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=3e-25  Score=201.12  Aligned_cols=195  Identities=18%  Similarity=0.168  Sum_probs=128.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhH----HHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNIL----NKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~----~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..++|+|.++.|+.+..|..+ ...+.++     ..+.+.++|+||+||++....    +.|.+.|...|++++.+|+++
T Consensus         6 P~vANiD~~~iV~s~~~P~~~-~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFS-TALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCC-HHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             CCccccCEEEEEEECCCCCCC-HHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCC
Confidence            357899999999999887543 3456665     367899999999999976543    345556667799999999999


Q ss_pred             ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh-----hhcccccccccccccccCCCCCeeeeeEE
Q 017187          112 RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ-----IALSRFPVQEKTKRATVGPLPGVTQDIAG  186 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~-----~g~~~~~~~~k~~~~~v~~~pg~T~~~~~  186 (375)
                      +.|+++|.+.+.           +-+.+++|.||||||||||+|.+     +|.++.. .++++|        ||+..+.
T Consensus        85 ~~gl~~L~~~l~-----------~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~-~~rGrH--------TTt~~~l  144 (231)
T d1t9ha2          85 QDSLADIIPHFQ-----------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH-LGRGKH--------TTRHVEL  144 (231)
T ss_dssp             HTTCTTTGGGGT-----------TSEEEEEESHHHHHHHHHHHHCC----------------------------CCCCCE
T ss_pred             hhHHHHHHHhhc-----------cceEEEECCCCccHHHHHHhhccHhHhhhcccccc-cCCCce--------eeeeEEE
Confidence            999988776652           23578999999999999999987     2222211 122223        4555555


Q ss_pred             EEEccCCcEEEEEcCCCCCCCCCChh-HHH--------HHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccc
Q 017187          187 FKIAHRPSIYVLDTPGVLVPSIPDIE-TGL--------KLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT  257 (375)
Q Consensus       187 ~~i~~~~~~~liDTPGi~~~~~~~~~-~~~--------~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~  257 (375)
                      +.+.   +.++||||||....+.+.+ ..+        .++-.+.++||.+..|.-+...-++-+......+|+.|....
T Consensus       145 ~~~~---gg~iiDTPG~r~~~l~~~~~~~l~~~F~ei~~~~~~CkF~dC~H~~EpgCaV~~av~~g~i~~~Ry~~Y~~l~  221 (231)
T d1t9ha2         145 IHTS---GGLVADTPGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFM  221 (231)
T ss_dssp             EEET---TEEEESSCSCSSCCCTTCCHHHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             EecC---CCEEEECCccccccccccCcccchhhhhhHHHHhCCCCCCCCCCCCCCCchHHHHHHcCCCCHHHHHHHHHHH
Confidence            5442   4799999999998876532 111        233344566666665555555555555555556666665554


Q ss_pred             cc
Q 017187          258 EV  259 (375)
Q Consensus       258 ~~  259 (375)
                      .+
T Consensus       222 ~e  223 (231)
T d1t9ha2         222 TE  223 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.23  E-value=1e-11  Score=113.62  Aligned_cols=69  Identities=22%  Similarity=0.308  Sum_probs=55.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCCCCCh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPSIPDI  211 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~~~~~  211 (375)
                      ...++|+++|.||||||||+|+|++           ...+.+++.+++|++.+.+.. ..+..+.++||||+..+...+.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg-----------~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~   98 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG-----------ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND   98 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC-----------CCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH
Confidence            5679999999999999999999998           466788889999998875432 2334699999999988765554


Q ss_pred             h
Q 017187          212 E  212 (375)
Q Consensus       212 ~  212 (375)
                      +
T Consensus        99 ~   99 (257)
T d1h65a_          99 M   99 (257)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=7.3e-12  Score=107.46  Aligned_cols=59  Identities=31%  Similarity=0.421  Sum_probs=47.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~  210 (375)
                      +|+++|.||||||||+|+|.+            +.+.+++.||+|++...+..   .++.++||||+.......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~------------~~~~~~~~~g~T~~~~~~~~---~~~~ivDtpG~~~~~~~~   60 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKIIEIEW---KNHKIIDMPGFGFMMGLP   60 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS------------CCCSSSSSTTCTTSCEEEEE---TTEEEEECCCBSCCTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhC------------CCceeeCCCCEeeccccccc---ccceecccCCceeccccc
Confidence            689999999999999999996            33568899999999876543   358999999986654443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=4.5e-11  Score=116.12  Aligned_cols=89  Identities=26%  Similarity=0.329  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCc
Q 017187          115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS  194 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~  194 (375)
                      +.+....+.+.+.+.  ...+++|+|+|.||||||||||+|++.+..       ...+.+...++||++...+.....++
T Consensus        38 ~~~~~~~i~~~l~~~--~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~-------~~~~~~~g~~~tT~~~~~~~~~~~~~  108 (400)
T d1tq4a_          38 IQLTNSAISDALKEI--DSSVLNVAVTGETGSGKSSFINTLRGIGNE-------EEGAAKTGVVEVTMERHPYKHPNIPN  108 (400)
T ss_dssp             HHHHHHHHHHHHHHH--HHCCEEEEEEECTTSSHHHHHHHHHTCCTT-------STTSCCCCC----CCCEEEECSSCTT
T ss_pred             HHHHHHHHHHHHHhc--ccCCcEEEEECCCCCCHHHHHHHHhCCCcC-------CCccCCCCCCCCceeeeeeeccCCCe
Confidence            444444454444432  245799999999999999999999973211       11233334467899888887777778


Q ss_pred             EEEEEcCCCCCCCCCChh
Q 017187          195 IYVLDTPGVLVPSIPDIE  212 (375)
Q Consensus       195 ~~liDTPGi~~~~~~~~~  212 (375)
                      +.++||||+..+.....+
T Consensus       109 ~~l~DtPG~~~~~~~~~~  126 (400)
T d1tq4a_         109 VVFWDLPGIGSTNFPPDT  126 (400)
T ss_dssp             EEEEECCCGGGSSCCHHH
T ss_pred             EEEEeCCCcccccccHHH
Confidence            999999999887655443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=6.9e-11  Score=98.96  Aligned_cols=61  Identities=38%  Similarity=0.588  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~  207 (375)
                      ++|+++|.||||||||+|+|.+           .+...+++.||+|+......+ ..+..+.++||||+..+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~   62 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLN-----------EDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET   62 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHH-----------HTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------CCceeeeccccccccceeEEEEeCCeeEEeccccccccCC
Confidence            5799999999999999999997           356778899999988764333 233357889999987653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.5e-10  Score=94.57  Aligned_cols=62  Identities=31%  Similarity=0.490  Sum_probs=48.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~  207 (375)
                      +++|+++|.||||||||+|+|.+           .+...++..||+|+......+. .+.++.++||||+....
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~   63 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG-----------REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS   63 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----------CCceEeecccccccceEeeeeeccCceeeecccccccccc
Confidence            47899999999999999999997           3456678889999887643222 23368899999998754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.99  E-value=5.4e-10  Score=95.96  Aligned_cols=103  Identities=20%  Similarity=0.183  Sum_probs=76.3

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHH----h
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHF----D   98 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~----~   98 (375)
                      +-+.|||. ...+.+...+..+|++++|+|++.+.......+...  ..++|+++|+||+|+++.+..+...+.+    +
T Consensus        63 ~~d~~g~~-~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~  141 (179)
T d1wb1a4          63 LVDAPGHA-DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQ  141 (179)
T ss_dssp             ECCCSSHH-HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccc-ccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHH
Confidence            56678884 566778889999999999999998654433333332  4679999999999999876543222211    1


Q ss_pred             h----CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           99 S----CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        99 ~----~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .    ...+++++||++|.|+++|++.|.+.+++
T Consensus       142 ~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         142 STHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            1    13478999999999999999999988876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=3.9e-10  Score=96.40  Aligned_cols=64  Identities=36%  Similarity=0.474  Sum_probs=49.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPSIPD  210 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~~~~  210 (375)
                      ..|+|+|.||||||||+|+|.+           .+...++..|++|+....... ..+..+.++||||+.......
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~-----------~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~   70 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG-----------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL   70 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhC-----------CCceeecccCCcccccccceeeeeeeeeeeccccccccccccc
Confidence            4699999999999999999997           355678889999988774332 233468899999997654433

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=7.5e-11  Score=101.44  Aligned_cols=57  Identities=25%  Similarity=0.316  Sum_probs=42.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~  205 (375)
                      .|+++|.||||||||+|+|.+            ....+++.+++|+....  ........+.++||||+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~------------~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~   61 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS------------AKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE   61 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE------------ECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhC------------CCCceecCCCceEeeeeceeEecCCcEEEEecCCCccc
Confidence            489999999999999999986            22356667777766542  3333444688999999854

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.90  E-value=1.8e-09  Score=92.15  Aligned_cols=93  Identities=15%  Similarity=0.091  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-C-CCcEEEE
Q 017187           34 AATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ----LSAKRRVIALNKKDLANPNILNKWVRHFDS-C-KQDYIAI  107 (375)
Q Consensus        34 k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~-g~~vi~i  107 (375)
                      ...+++.+.+++||+||+|+|++.+....+..+.+.    ..++|+++|+||+|+.....  .+.+.+.+ . ...++++
T Consensus        73 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i  150 (178)
T d1wf3a1          73 FMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHELLPEAEPRML  150 (178)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHTSTTSEEEEC
T ss_pred             hcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH--HHHHHHHhhcccCceEEE
Confidence            345667778999999999999998876654444443    34689999999999976432  33334432 2 2468899


Q ss_pred             ecCCccCHHHHHHHHHHHHhh
Q 017187          108 NAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ||+++.|+++|++.|.+.+++
T Consensus       151 SA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         151 SALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCB
T ss_pred             ecCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999887754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2.9e-09  Score=90.13  Aligned_cols=92  Identities=17%  Similarity=0.163  Sum_probs=69.0

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS  114 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g  114 (375)
                      ..+...+..+|++++++|++.+.......+.+.  ..++|+|+|+||+|+.++...+...+.++....+++++||+++.|
T Consensus        72 ~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~g  151 (171)
T d1mkya1          72 EVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNIN  151 (171)
T ss_dssp             HHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred             cccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCC
Confidence            445667899999999999988776655555444  357899999999999765433323333332334679999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 017187          115 VQKLLELVELKLKE  128 (375)
Q Consensus       115 vk~Ll~~L~~~l~~  128 (375)
                      +++|+++|.+.+++
T Consensus       152 id~L~~~i~~~l~e  165 (171)
T d1mkya1         152 LDTMLETIIKKLEE  165 (171)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999998876

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=8e-10  Score=94.48  Aligned_cols=57  Identities=28%  Similarity=0.538  Sum_probs=40.5

Q ss_pred             EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-E-EEEccCCcEEEEEcCCCCCC
Q 017187          138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-G-FKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~-~~i~~~~~~~liDTPGi~~~  206 (375)
                      |+++|.||||||||+|+|.+            ....++..+++|+... . .....+..+.++||||+...
T Consensus         4 VaivG~~nvGKSTLin~L~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~   62 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR------------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG   62 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS------------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred             EEEECCCCCCHHHHHHHHhC------------CCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecC
Confidence            89999999999999999996            2233444555555543 2 22334456889999998763

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=5e-10  Score=104.92  Aligned_cols=38  Identities=29%  Similarity=0.407  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA  185 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~  185 (375)
                      ++|++||.||||||||+|+|.+            ..+.++++|+||.++.
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~------------~~~~v~nypftT~~pn   38 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL------------VDVEIANYPFTTIEAN   38 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------------------CC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC------------CCCchhcCCCCcccCc
Confidence            3699999999999999999997            4578999999997653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=1.5e-09  Score=92.00  Aligned_cols=60  Identities=37%  Similarity=0.492  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLVPS  207 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~~~  207 (375)
                      +|+++|.||||||||+|+|.+           .....++..||+|+......+... ..+.+.||||+....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~   62 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK-----------KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP   62 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTSSG
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CCcceecccCceeeccccccccccccccccccccceeeee
Confidence            689999999999999999997           345678888999988765434332 357889999997654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=1.6e-09  Score=92.76  Aligned_cols=61  Identities=38%  Similarity=0.578  Sum_probs=42.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      ..++|+++|.||||||||+|+|++           .+.+.++..+++|+......+ ..+.++.++||||+..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~-----------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~   68 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN-----------KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR   68 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC-----------CCcceeecccccccccceeeeccCCceeeeeccCCccc
Confidence            468999999999999999999997           355778888999988763222 2334688999999854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=1.1e-08  Score=88.24  Aligned_cols=91  Identities=9%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEEEe
Q 017187           36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIAIN  108 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~iS  108 (375)
                      .....+....+|+|++|+|++.++......+.+.  ..++|+++|+||+|+.++....+..+.++     ....+++++|
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             HhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            4455566778899999999998877655455444  46789999999999987765544433332     2345789999


Q ss_pred             cCCccCHHHHHHHHHHHH
Q 017187          109 AHSRSSVQKLLELVELKL  126 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l  126 (375)
                      |+++.|+++|+++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998775

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.75  E-value=3e-09  Score=98.73  Aligned_cols=64  Identities=25%  Similarity=0.348  Sum_probs=49.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCc
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPS  194 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~  194 (375)
                      ...+++++||.||||||||+|+|.+           ...+.++++|+||.++..  +.+..                ...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~-----------~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~   76 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITK-----------SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF   76 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH-----------STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHC-----------CCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceeccc
Confidence            4568999999999999999999997           344678999999987642  33221                124


Q ss_pred             EEEEEcCCCCCCC
Q 017187          195 IYVLDTPGVLVPS  207 (375)
Q Consensus       195 ~~liDTPGi~~~~  207 (375)
                      +.++|.||+..-.
T Consensus        77 i~~~DvaGLv~gA   89 (296)
T d1ni3a1          77 LTVFDIAGLTKGA   89 (296)
T ss_dssp             EEEECTGGGCCCC
T ss_pred             ceeeecccccccc
Confidence            7899999998643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.71  E-value=1.4e-08  Score=88.79  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=72.0

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-hhHhhc---cCCCCEEEEEEcCCCCChhhHHH----HHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-PGLQPQ---LSAKRRVIALNKKDLANPNILNK----WVRH   96 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~----~~~~   96 (375)
                      +-..|||- .-.+.+...+..+|++|+|+||+.+..... ......   ...+|+|+++||+|+.+......    ..++
T Consensus        90 iiD~PGH~-df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~  168 (205)
T d2qn6a3          90 FIDAPGHE-VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF  168 (205)
T ss_dssp             EEECSCHH-HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EeccchHH-HHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHH
Confidence            45679995 566677788899999999999998753211 111111   34457888899999997654322    2222


Q ss_pred             Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..   ...+++++||+++.|+++|++.+..+++.
T Consensus       169 l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         169 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            221   13478999999999999999999887753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=3.3e-08  Score=82.09  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=69.4

Q ss_pred             HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      .++..+.+.++|+|++|+|++.+.......+.......++++++||+|+.++...+...+.+ ....+++++||+++.|+
T Consensus        71 ~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~-~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          71 IERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccchhhhHHHHHHh-CCCCcEEEEECCCCCCH
Confidence            34556678999999999999988766555555556778999999999999876655555554 34568999999999999


Q ss_pred             HHHHHHHHH
Q 017187          116 QKLLELVEL  124 (375)
Q Consensus       116 k~Ll~~L~~  124 (375)
                      ++|++.|.+
T Consensus       150 ~~L~~~I~k  158 (160)
T d1xzpa2         150 EKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=2.1e-08  Score=86.51  Aligned_cols=64  Identities=28%  Similarity=0.391  Sum_probs=40.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCCh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDI  211 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~  211 (375)
                      .+|+|+|.||||||||||+|.+.          ...+.++..+++|+......+.  ....++|+||+..+.....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~----------~~~~~~~~~~~~t~~~~~~~~~--~~~~~~d~~~~~~~~~~~~   87 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINR----------KNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVSKS   87 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-----------------------CCEEEEEET--TTEEEEECCCBCCCSSCHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCC----------CceEEeecccceeeeccccccc--ccceEEEEEeecccccccc
Confidence            37999999999999999999971          2346778888999887765454  3588999999987765543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=1.9e-08  Score=85.63  Aligned_cols=92  Identities=14%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEec
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINA  109 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa  109 (375)
                      .++.+.+..+|++++++|+..............       ..++|+|+|+||+|+.+++..+...+.+...+.+++++||
T Consensus        71 ~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA  150 (180)
T d1udxa2          71 LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSA  150 (180)
T ss_dssp             HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred             HHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEc
Confidence            456677899999999999854321111111111       2358999999999999988777777777777889999999


Q ss_pred             CCccCHHHHHHHHHHHHhh
Q 017187          110 HSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +++.|+++|++.+.+.++.
T Consensus       151 ~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         151 LTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999888765

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.65  E-value=7.6e-09  Score=95.05  Aligned_cols=59  Identities=24%  Similarity=0.399  Sum_probs=40.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCcEE
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPSIY  196 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~~~  196 (375)
                      .++|++||.||||||||+|+|.+            ..+.++++|.||.++..  ..+..                ...+.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~------------~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~   69 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK------------AGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTME   69 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH------------TC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHC------------CCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEE
Confidence            46899999999999999999997            34678899999987652  22221                12377


Q ss_pred             EEEcCCCCC
Q 017187          197 VLDTPGVLV  205 (375)
Q Consensus       197 liDTPGi~~  205 (375)
                      ++|.||+..
T Consensus        70 ~~Di~GLi~   78 (278)
T d1jala1          70 FVDIAGLVA   78 (278)
T ss_dssp             EEECCSCCT
T ss_pred             EEEccccCC
Confidence            999999974

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.3e-08  Score=86.03  Aligned_cols=60  Identities=27%  Similarity=0.350  Sum_probs=44.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~~  205 (375)
                      -..|+++|.||||||||||+|.+           .+.+.++..+++|+.... ........+..+|+||+..
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~-----------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLG-----------QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM   65 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT-----------CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC-----------CCceeeccCCCceEEEEEeeeecCCceeEeecCCCcee
Confidence            34689999999999999999997           345667777777766543 3333344567789999854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=2.6e-08  Score=82.79  Aligned_cols=96  Identities=10%  Similarity=0.036  Sum_probs=70.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhH-----hhccCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL-----QPQLSAKRRVIALNKKDLANPNILNKWVRHFDS   99 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l-----~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~   99 (375)
                      ..+-+.+....+++.......+|++++++|+..+.+.....+     .+...++|+++|+||+||.+......     +.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~-----~~  134 (161)
T d2gj8a1          60 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMS-----EV  134 (161)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEE-----EE
T ss_pred             ccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHHH-----Hh
Confidence            345566667777888888999999999999987765443322     11235789999999999876432110     12


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .+.+++++||+++.|+++|+++|.+.
T Consensus       135 ~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         135 NGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             TTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            34578999999999999999998764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.59  E-value=5e-08  Score=84.43  Aligned_cols=100  Identities=20%  Similarity=0.204  Sum_probs=69.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH--hhccCCCCEEEEEEcCCCCChhhHHH----HHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL--QPQLSAKRRVIALNKKDLANPNILNK----WVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l--~~~~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~   98 (375)
                      .-||| ..-.+.+...+..+|++++|+|+..+.....  ..+  ......+++|+++||+|+.+......    ..+++.
T Consensus        84 DtPGh-~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~  162 (195)
T d1kk1a3          84 DAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE  162 (195)
T ss_dssp             ECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             ccchh-hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhc
Confidence            46999 4556677788999999999999987653321  111  11134455788899999998754322    223332


Q ss_pred             hC---CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SC---KQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~---g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..   ..+++++||++|.|+++|++.+.+.+|
T Consensus       163 ~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         163 GTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            22   246899999999999999999987764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=2.4e-08  Score=86.44  Aligned_cols=55  Identities=18%  Similarity=0.278  Sum_probs=39.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      ..+|+++|.||||||||+|+|.+           .+.     .|++|+......+ ..+..+.++||||...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~-----------~~~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~   58 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTT-----------DSV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVK   58 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH-----------SSC-----CCBCCCSSCEEETTGGGSSCEEEECCCCGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----------CCC-----CCeEEecceEEEEEeCCeEEEEEecccccc
Confidence            45899999999999999999997           121     2566665543322 2334689999999764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=3.7e-07  Score=77.17  Aligned_cols=91  Identities=18%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCC-----------CCCCchhHhhc--cCCCCEEEEEEcCCCCChhh-H-HHHHHHHhhCC
Q 017187           37 RAIKHRLKISDLVIEVRDSRIP-----------LSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI-L-NKWVRHFDSCK  101 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p-----------~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~-~-~~~~~~~~~~g  101 (375)
                      ..+...++.+|++++|+|++.+           ....+..+.+.  ..++|+|+|+||+|++.... . ..+.+.+. ..
T Consensus        73 ~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~-~~  151 (184)
T d2cxxa1          73 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE-VP  151 (184)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT-CC
T ss_pred             hhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHhc-cc
Confidence            3455667899999999998642           22222222222  35789999999999875432 1 22223332 11


Q ss_pred             -----CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187          102 -----QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       102 -----~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                           ..++++||+++.|+++|++.+.+.+++
T Consensus       152 ~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         152 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                 247889999999999999999988875

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.7e-07  Score=79.70  Aligned_cols=92  Identities=14%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh-----CCCcEEEE
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDS-----CKQDYIAI  107 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~-----~g~~vi~i  107 (375)
                      ..+...++.+|++++|+|+..+.......+...  ..++|+|+|+||+|+.....  ..+..+.+.+     ...+++++
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  162 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  162 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEE
Confidence            456677889999999999998776655444443  46789999999999875432  2233333321     12478999


Q ss_pred             ecCCccCHHHHHHHHHHHHhh
Q 017187          108 NAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       108 Sa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ||+++.|+++|++.|.+.+..
T Consensus       163 Sa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         163 SADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999876654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.50  E-value=7.6e-08  Score=83.81  Aligned_cols=118  Identities=17%  Similarity=0.121  Sum_probs=75.5

Q ss_pred             hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEc
Q 017187            9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNK   81 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK   81 (375)
                      ||+++......+...+    +-.-|||.. -.+.+...+..+|++|+|+||......+......+   ...+|+|+++||
T Consensus        50 rgiTi~~~~~~~~~~~~~~~~iDtPGh~~-f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK  128 (196)
T d1d2ea3          50 RGITINAAHVEYSTAARHYAHTDCPGHAD-YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNK  128 (196)
T ss_dssp             TTEEEECEEEEEECSSCEEEEEECSSHHH-HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CCccCCcceEEEEeceeeEEeecCcchHH-HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEec
Confidence            3444444434443322    456899954 45677888999999999999998765433332222   345678889999


Q ss_pred             CCCCChhhH-H----HHHHHHhhCC-----CcEEEEecCCc----------cCHHHHHHHHHHHHh
Q 017187           82 KDLANPNIL-N----KWVRHFDSCK-----QDYIAINAHSR----------SSVQKLLELVELKLK  127 (375)
Q Consensus        82 ~DL~~~~~~-~----~~~~~~~~~g-----~~vi~iSa~~~----------~gvk~Ll~~L~~~l~  127 (375)
                      +|+++.+.. +    +..+++...+     .+++++|+.++          .+++.|++.+.++++
T Consensus       129 ~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         129 ADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            999864321 1    2223333222     46889999876          477788887766654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.46  E-value=6e-09  Score=92.85  Aligned_cols=102  Identities=21%  Similarity=0.140  Sum_probs=68.4

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHH------------
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILN------------   91 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~------------   91 (375)
                      -.-|||.. -.+.+...+..+|++|+|+||..+.......+...  ..++|+|+|+||+|+++.+...            
T Consensus        75 iDtPGh~~-f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~  153 (227)
T d1g7sa4          75 IDTPGHEA-FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ  153 (227)
T ss_dssp             ECCCTTSC-CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred             ccccceec-ccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcc
Confidence            35788843 23334456788999999999998776655444444  4678999999999987543110            


Q ss_pred             -------------HHHHHHhhCC---------------CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           92 -------------KWVRHFDSCK---------------QDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        92 -------------~~~~~~~~~g---------------~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                                   .....+.+.+               .+++++||.+|.|+++|++.+.....+
T Consensus       154 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                         0001110111               257899999999999999988776544

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.41  E-value=1.2e-07  Score=79.89  Aligned_cols=97  Identities=19%  Similarity=0.113  Sum_probs=64.8

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD--   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~--   98 (375)
                      ++|+ ..........+..+|.+|+|+|+.++.+..+.  .+.+.     ..++|+++|.||+||.+........+.+.  
T Consensus        67 ~~g~-~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~  145 (176)
T d1fzqa_          67 IGGQ-RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH  145 (176)
T ss_dssp             CSSC-GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred             cccc-ccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHH
Confidence            4454 33334456778999999999998765332211  11111     34689999999999987654444443332  


Q ss_pred             ---hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 ---SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                         .....++.+||+++.|+++++++|.+.
T Consensus       146 ~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         146 TIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             GCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence               223467889999999999999988653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=3e-07  Score=75.32  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=40.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      +++++|.||||||||+|+|.+           ++.+.+.+.++++.....   ..+....+.||+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~-----------~~~~~~~~t~~~~~~~~~---~~~~~~~~~~~~~~~~   56 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN-----------DRLATLQPTWHPTSEELA---IGNIKFTTFDLGGHIQ   56 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-----------SCCCCCCCCCSCEEEEEC---CTTCCEEEEECCCSGG
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CCCCeeeceeeEeEEEec---cCCeeEEEEeeccchh
Confidence            689999999999999999997           345566666666664332   2234588999998754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.35  E-value=3.2e-07  Score=76.42  Aligned_cols=54  Identities=19%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGV  203 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi  203 (375)
                      .++|+++|.||||||||+|.|.+           .....+++    |.......+. .+-.+.++||||-
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~-----------~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~   56 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG-----------EDVDTISP----TLGFNIKTLEHRGFKLNIWDVGGQ   56 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT-----------CCCSSCCC----CSSEEEEEEEETTEEEEEEEECCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC-----------CCCCcccc----eEeeeeeeccccccceeeeecCcc
Confidence            57899999999999999999986           22233333    3333222222 2235889999994

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.32  E-value=1.2e-07  Score=80.80  Aligned_cols=66  Identities=21%  Similarity=0.238  Sum_probs=34.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVL  204 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~  204 (375)
                      +.++|+++|.||+|||||+|+|.+.+....     ..........|.|..... .....+..+.++||||..
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~   70 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSA-----HDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA   70 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEETTEEEEECCCSSHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCcee-----cccccceeeeeeeccccccccccCCcccccccccccc
Confidence            457899999999999999999996221110     011222223344444331 222333457889999954

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=3.8e-07  Score=76.19  Aligned_cols=58  Identities=19%  Similarity=0.317  Sum_probs=33.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccCC-cEEEEEcCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHRP-SIYVLDTPGVLV  205 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~~-~~~liDTPGi~~  205 (375)
                      ++|+++|.||||||||+|++.+ +           .......|.++.+..  .+.+.... .+.++||||-..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~-~-----------~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~   63 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE-D-----------KFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER   63 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-C-----------CCCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHh-C-----------CCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence            5799999999999999999986 1           111122233343333  23222211 366799999643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.3e-07  Score=78.12  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....+|+++|.||||||||+|+|.+
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            5678999999999999999999986

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=6.5e-07  Score=75.10  Aligned_cols=59  Identities=14%  Similarity=0.276  Sum_probs=38.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGV  203 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi  203 (375)
                      -++|+++|.+|||||||||+|.+ +         .-.....+.+|.+.....+..... -.+.++||||-
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~   64 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYAD-D---------SFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ   64 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH-S---------CCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHc-C---------CCCcccccccccceeeEEEEeecceEEEEEEECCCc
Confidence            36899999999999999999986 1         111223344455544433333221 14778999994

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=5.4e-07  Score=78.03  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc--CCcEEEEEcCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH--RPSIYVLDTPGV  203 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~--~~~~~liDTPGi  203 (375)
                      +|+++|.||||||||+|+|.+           .+...+.+..+++..  .+.+..  .-.+.++||||.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~-----------~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~   57 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT-----------GQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGH   57 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-----------SCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHc-----------CCCCcccCCeeEEEE--EEEEeeeeeeeeeeeecccc
Confidence            589999999999999999997           222233333333333  333322  234788999996

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=1.1e-06  Score=74.41  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=68.8

Q ss_pred             ccchhHHHH------HHHHHHHhhhcCeEEEEEeCCCCCCCCchhH---hh-c-------cCCCCEEEEEEcCCCCChhh
Q 017187           27 WFPGHMAAA------TRAIKHRLKISDLVIEVRDSRIPLSSAHPGL---QP-Q-------LSAKRRVIALNKKDLANPNI   89 (375)
Q Consensus        27 wfpgHm~k~------~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l---~~-~-------~~~kp~IiVlNK~DL~~~~~   89 (375)
                      ..||+....      .++..+.+..+|.++++++............   .. .       ..++|+++|+||+|+.+...
T Consensus        55 DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~  134 (185)
T d1lnza2          55 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE  134 (185)
T ss_dssp             EHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH
T ss_pred             cCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH
Confidence            578864321      2455567789999999998765433322111   00 0       24689999999999987543


Q ss_pred             H-HHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           90 L-NKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        90 ~-~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      . +.+.+.+ ..+.+++++||+++.|+++|++.+.+.+++
T Consensus       135 ~~~~~~~~~-~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         135 NLEAFKEKL-TDDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             HHHHHHHHC-CSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             HHHHHHHHh-ccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            2 3333333 346688999999999999999999888754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1e-06  Score=73.98  Aligned_cols=57  Identities=21%  Similarity=0.335  Sum_probs=36.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccCC-cEEEEEcCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHRP-SIYVLDTPGV  203 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~~-~~~liDTPGi  203 (375)
                      -++|+++|.+|||||||||.+.+            ........|+++.+..  .+.+.... .+.++||||-
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~------------~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~   64 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQ------------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ   64 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------------CCCCCcccccccceEEEEEEEECCEEEEEEEEECCCc
Confidence            36899999999999999999986            1122223334444433  23332211 2667999993

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.1e-06  Score=74.33  Aligned_cols=61  Identities=23%  Similarity=0.355  Sum_probs=37.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      .++|+++|.+|||||||||+|.+ +         .-.....+.++.+.....+.+... -.+.++||||...
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   68 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTD-D---------TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER   68 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH-S---------CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh-C---------CCCCccccceeecceeEEEEEeccccEEEEEECCCchh
Confidence            57899999999999999999986 1         111222222333322223333322 1478899999754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.22  E-value=9.2e-07  Score=72.36  Aligned_cols=22  Identities=18%  Similarity=0.561  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||||||||+|+|.+
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999986

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.21  E-value=5.1e-07  Score=75.86  Aligned_cols=60  Identities=17%  Similarity=0.322  Sum_probs=41.9

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ....++|+++|.||||||||+|.|.+           .+...+.+..|++....  ... +-.+.++|+||-..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~-----------~~~~~~~~~~~~~~~~i--~~~-~~~~~i~d~~g~~~   72 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS-----------EDISHITPTQGFNIKSV--QSQ-GFKLNVWDIGGQRK   72 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC-----------SCCEEEEEETTEEEEEE--EET-TEEEEEEECSSCGG
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc-----------CCCCcceeeeeeeEEEe--ccC-CeeEeEeecccccc
Confidence            45679999999999999999999986           23344445556554322  222 22578899999753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=7e-07  Score=77.92  Aligned_cols=70  Identities=20%  Similarity=0.300  Sum_probs=43.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh-hccccccccc-ccccccCCCC-----CeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK-TKRATVGPLP-----GVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k-~~~~~v~~~p-----g~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      +.++|+++|.+|+|||||+|+|+.. |.+..  .+. .........|     |+|.+.....+ ..+..+.++||||...
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~--~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENP--NVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCT--TSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccC--CcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh
Confidence            4689999999999999999999752 21110  000 0111122223     78887764322 3345689999999765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=9.6e-07  Score=75.86  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~  205 (375)
                      -++|+|+|.+|||||||+|.+.. +         .-.....+..|++.....+.+.... .+.++||||-..
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~-~---------~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~   67 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSD-D---------TYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER   67 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH-C---------CCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHhh-C---------CCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchh
Confidence            46899999999999999999986 1         1122333444555544444343322 477899999654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.19  E-value=9.3e-07  Score=74.88  Aligned_cols=62  Identities=16%  Similarity=0.292  Sum_probs=38.5

Q ss_pred             hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          130 ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       130 ~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      ....+.++|+++|.||||||||+|.|..           .......+..|.+....  .. ..-.+.++||||...
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~-----------~~~~~~~~t~~~~~~~~--~~-~~~~~~i~D~~g~~~   73 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQI-----------GEVVTTKPTIGFNVETL--SY-KNLKLNVWDLGGQTS   73 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTCC-----------SEEEEECSSTTCCEEEE--EE-TTEEEEEEEEC----
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHhc-----------CCCCccccccceEEEEE--ee-CCEEEEEEecccccc
Confidence            3457789999999999999999999975           12233334444433221  11 222478899999865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.17  E-value=1.6e-06  Score=71.28  Aligned_cols=59  Identities=15%  Similarity=0.273  Sum_probs=39.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~  206 (375)
                      +.++|+++|.||||||||||++.+           .+...+.+..+.+...  . ....-.+.+.|+||....
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~-----------~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~   62 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV-----------GEVVTTIPTIGFNVET--V-TYKNLKFQVWDLGGLTSI   62 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEEEE--E-EETTEEEEEEEECCCGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC-----------CCCcceecccceeeee--e-ccCceEEEEeeccccccc
Confidence            468999999999999999999987           2334444443433321  1 222335778899987543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.17  E-value=6.2e-07  Score=79.40  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+|+|.||+|||||+|+|++
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHh
Confidence            499999999999999999987

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.15  E-value=5.7e-07  Score=76.24  Aligned_cols=88  Identities=17%  Similarity=0.074  Sum_probs=61.9

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEEEe
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIAIN  108 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~iS  108 (375)
                      ..+..+|++++|+|+.++.+..+  ..+.+.     ..+.|+++|.||+|+.+.....+..+.+.     ..+..++.+|
T Consensus        80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S  159 (182)
T d1moza_          80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  159 (182)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence            45789999999999987654322  112222     24689999999999975433333333331     2234688999


Q ss_pred             cCCccCHHHHHHHHHHHHhh
Q 017187          109 AHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l~~  128 (375)
                      |+++.|+++++++|.+.+.+
T Consensus       160 A~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         160 AIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             GGGTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999887765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.5e-06  Score=72.90  Aligned_cols=86  Identities=16%  Similarity=0.084  Sum_probs=62.7

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV  115 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv  115 (375)
                      ..++.+|.+++|+|...+.+-.+  ..+...   ..+.|+++|.||+||.......+...+....+.+++.+||+++.|+
T Consensus        71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v  150 (170)
T d1i2ma_          71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF  150 (170)
T ss_dssp             GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTT
T ss_pred             hhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            46789999999999987654332  111111   3578999999999998654433333444456778899999999999


Q ss_pred             HHHHHHHHHHH
Q 017187          116 QKLLELVELKL  126 (375)
Q Consensus       116 k~Ll~~L~~~l  126 (375)
                      ++++..|.+.+
T Consensus       151 ~e~f~~l~~~l  161 (170)
T d1i2ma_         151 EKPFLWLARKL  161 (170)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998887655

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.13  E-value=2.8e-06  Score=75.08  Aligned_cols=106  Identities=21%  Similarity=0.271  Sum_probs=66.5

Q ss_pred             hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCC-CCEEEEEEc
Q 017187            9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSA-KRRVIALNK   81 (375)
Q Consensus         9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~-kp~IiVlNK   81 (375)
                      ++++...........+    +-.-||| ..-+..+...+..+|.+|+|+||......+-......  ..+ +.+|+++||
T Consensus        73 ~g~ti~~~~~~~~~~~~~~~iiD~PGH-~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK  151 (222)
T d1zunb3          73 QGITIDVAYRYFSTAKRKFIIADTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINK  151 (222)
T ss_dssp             --CCCCCEEEEEECSSEEEEEEECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             cCCCceeeEEEEeccceEEEEEeccch-hhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEc
Confidence            4454444444444433    4458999 4556777788999999999999988765443322222  334 457889999


Q ss_pred             CCCCChh--hH----HHHHHHHhhCCC-----cEEEEecCCccCH
Q 017187           82 KDLANPN--IL----NKWVRHFDSCKQ-----DYIAINAHSRSSV  115 (375)
Q Consensus        82 ~DL~~~~--~~----~~~~~~~~~~g~-----~vi~iSa~~~~gv  115 (375)
                      +|+++..  ..    ++...++...+.     +++++|+.+|.|+
T Consensus       152 ~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni  196 (222)
T d1zunb3         152 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNV  196 (222)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTT
T ss_pred             cccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccC
Confidence            9998632  11    233344443332     4689999999876

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.12  E-value=2.2e-06  Score=71.57  Aligned_cols=61  Identities=18%  Similarity=0.269  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      .+.++|+|+|.||||||||+|+|.+           .+.+.+.+..+++....  ... +-.+.++|++|.....
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~-----------~~~~~~~~~~~~~~~~~--~~~-~~~~~~~d~~~~~~~~   73 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVEEI--VIN-NTRFLMWDIGGQESLR   73 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT-----------TSCEEEECCSCSSCEEE--EET-TEEEEEEECCC----C
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc-----------CCCCccccccceeEEEE--eec-ceEEEEeccccccccc
Confidence            4678999999999999999999997           23344445444443322  122 2357889999875543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3e-06  Score=70.87  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=35.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVL  204 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~  204 (375)
                      .++|+++|.+|||||||+|.+.. +..        ......+..|.+.....+...+.. .+.++||||-.
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e   67 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD-GAF--------LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE   67 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH-SCC--------CCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh-CCC--------CcccccceeeeeeEEEEEEecCcEEEEEEEECCCch
Confidence            46899999999999999999986 111        011111222333332233333221 36789999953

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.10  E-value=1.9e-06  Score=71.67  Aligned_cols=98  Identities=10%  Similarity=0.054  Sum_probs=65.9

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      .+|||- .........+..+|.+++|+|+.++.+-.+  ..+...     ..++|+++|.||+|+..........+.+. 
T Consensus        53 D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~  131 (164)
T d1zd9a1          53 DIGGQP-RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL  131 (164)
T ss_dssp             EECCSH-HHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG
T ss_pred             eccccc-cccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHH
Confidence            378873 233344567899999999999876432111  112222     35689999999999975444444444432 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                          ..+..++.+||+++.|+++++++|.+.
T Consensus       132 ~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         132 SAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             GGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence                223467899999999999999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.4e-06  Score=72.54  Aligned_cols=86  Identities=12%  Similarity=0.025  Sum_probs=59.4

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCch--hHh---hccCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHP--GLQ---PQLSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~--~l~---~~~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ...++.+|++++|+|...+.+-.+-  .+.   +...+.|+++|.||+|+.+...  .++..++.++.+.+++.+||+++
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g  148 (164)
T d1z2aa1          69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKED  148 (164)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             hhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCC
Confidence            3567899999999999765432221  122   2246789999999999975422  12222333345678899999999


Q ss_pred             cCHHHHHHHHHHH
Q 017187          113 SSVQKLLELVELK  125 (375)
Q Consensus       113 ~gvk~Ll~~L~~~  125 (375)
                      .|++++++.+.+.
T Consensus       149 ~~v~e~f~~l~~~  161 (164)
T d1z2aa1         149 LNVSEVFKYLAEK  161 (164)
T ss_dssp             BSSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999998887554

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.09  E-value=1.2e-06  Score=73.65  Aligned_cols=99  Identities=14%  Similarity=-0.002  Sum_probs=64.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-   98 (375)
                      .+||+... .......+..+|.+|+|+|+..+.+..+  ..+...     ....|+++|.||+||.+..........+. 
T Consensus        62 D~~g~~~~-~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~  140 (173)
T d1e0sa_          62 DVGGQDKI-RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL  140 (173)
T ss_dssp             EESCCGGG-HHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG
T ss_pred             cCCCcchh-hhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHH
Confidence            36665332 2334457899999999999875433211  112221     24689999999999975433333333321 


Q ss_pred             ----hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           99 ----SCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                          ..+..++.+||++++|+++++++|.+.+
T Consensus       141 ~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         141 TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence                2234577899999999999999997654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.09  E-value=1.4e-06  Score=72.44  Aligned_cols=101  Identities=17%  Similarity=0.068  Sum_probs=66.3

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD   98 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~   98 (375)
                      -.+||+-. ........+..+|.+++|+|+.+..+...  ..+.+.     ..+.|+++|.||+|+.+.....+....+.
T Consensus        51 ~D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  129 (165)
T d1ksha_          51 WDVGGQKS-LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE  129 (165)
T ss_dssp             EEECCSHH-HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             eecCcchh-hhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHH
Confidence            34778732 22233456889999999999865433211  112221     35689999999999976544433333331


Q ss_pred             -----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 -----SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                           ..+..++.+||+++.|+++++++|.+.+.
T Consensus       130 ~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         130 LDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS  163 (165)
T ss_dssp             GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence                 22346788999999999999999877654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=5.4e-06  Score=75.74  Aligned_cols=41  Identities=17%  Similarity=0.211  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhhhhc--cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          117 KLLELVELKLKEVIS--REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       117 ~Ll~~L~~~l~~~~~--~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++.+.+.+...+.  .-.-.+++|+|.-++|||||||+|++
T Consensus         6 ~~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1           6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhC
Confidence            455555555555421  22345799999999999999999998

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.08  E-value=1e-06  Score=74.11  Aligned_cols=59  Identities=15%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV  205 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~  205 (375)
                      .+.++|+++|.||||||||+|.+..           .......+..|.+....   ....-.+.++||||...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~-----------~~~~~~~~t~~~~~~~~---~~~~~~~~i~D~~g~~~   68 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL-----------GQSVTTIPTVGFNVETV---TYKNVKFNVWDVGGQDK   68 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC-----------CCCEEEEEETTEEEEEE---EETTEEEEEEEESCCGG
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc-----------CCCCCccceeeeeEEEe---eccceeeEEecCCCcch
Confidence            5679999999999999999999985           12222222223332211   12223578999999643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=2.9e-06  Score=71.91  Aligned_cols=61  Identities=21%  Similarity=0.230  Sum_probs=38.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLVP  206 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~~  206 (375)
                      ++|+|+|.+|||||||+|.+.+ +..         .....+..|.+.....+..... -.+.++||||....
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~-~~f---------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~   64 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN-KKF---------SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF   64 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH-SCC---------CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHh-CCC---------CCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccc
Confidence            5799999999999999999986 111         1122233444444333333221 14678999997653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.7e-06  Score=70.02  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -++|+++|.||||||||||++.+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999986

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.2e-06  Score=70.86  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|.+..
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999986

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.05  E-value=3e-06  Score=70.45  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|.|..
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            47899999999999999999986

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.7e-06  Score=70.66  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~  205 (375)
                      -++|+|+|.+|||||||+|.+.+ +..         .....+.++.+.....+.+.... .+.++||||-..
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~   65 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTR-NEF---------NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER   65 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH-SCC---------CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh-CCC---------CCcccccccceeeeEEEEECCEEEEEEecccCCcHH
Confidence            36899999999999999999986 110         11112222333333333333221 477999999643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=3.4e-06  Score=70.11  Aligned_cols=62  Identities=21%  Similarity=0.217  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCCCC
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLVPS  207 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~~~  207 (375)
                      ++|+++|.||||||||+|.+.. +.         -.....+..|.+.....+.... .-.+.++||||-....
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~-~~---------~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   65 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK-GI---------FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD   65 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH-CC---------CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT
T ss_pred             EEEEEECCCCcCHHHHHHHHHh-CC---------CCcccccccccccceeeeeecCceeeeeeeccCCccchh
Confidence            6899999999999999999986 11         0111122223332222222221 1246789999976543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=3.7e-06  Score=73.14  Aligned_cols=80  Identities=14%  Similarity=0.039  Sum_probs=55.9

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEE
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIAL   79 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVl   79 (375)
                      -.||+++..........+    +-.-|||.. ..+.+...+..+|++|+|+||......+......+  ..+.| +++++
T Consensus        49 ~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d-f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~i  127 (204)
T d2c78a3          49 RARGITINTAHVEYETAKRHYSHVDCPGHAD-YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFM  127 (204)
T ss_dssp             HHHTCCCSCEEEEEECSSCEEEEEECCCSGG-GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             hcCCeEEEeeEEEEEeCCeEEEEEeCCCchh-hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence            356887766655544433    345899964 55778899999999999999998776544333333  34555 56679


Q ss_pred             EcCCCCCh
Q 017187           80 NKKDLANP   87 (375)
Q Consensus        80 NK~DL~~~   87 (375)
                      ||+|+++.
T Consensus       128 NK~D~~~~  135 (204)
T d2c78a3         128 NKVDMVDD  135 (204)
T ss_dssp             ECGGGCCC
T ss_pred             EecccCCC
Confidence            99999864

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.00  E-value=2.3e-06  Score=73.57  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|+|||||+|+|.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHh
Confidence            4568999999999999999999986

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=5.6e-06  Score=69.17  Aligned_cols=102  Identities=12%  Similarity=0.001  Sum_probs=66.0

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhh---c--cCCCCEEEEEEcCCCCChh--hHHHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQP---Q--LSAKRRVIALNKKDLANPN--ILNKWVRH   96 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~---~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~   96 (375)
                      -+++|+.. ........+..+|++++|+|...|.+-.+  ..+..   .  ....|+++|.||+|+....  ..++..++
T Consensus        58 ~d~~g~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~  136 (171)
T d2erya1          58 LDTAGQEE-FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL  136 (171)
T ss_dssp             EECC-----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHH
T ss_pred             cccccccc-ccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHH
Confidence            34566533 22333466789999999999887643221  11111   1  2468899999999997542  12334444


Q ss_pred             HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .++.+.+++.+||+++.|+++++..+.+.+.+
T Consensus       137 ~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             HHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            44567788899999999999999988776643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.00  E-value=6.7e-06  Score=75.51  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhhhhc-cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          117 KLLELVELKLKEVIS-REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       117 ~Ll~~L~~~l~~~~~-~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+.+.+.+.+...+. .-.-.+++|||..++|||||||+|+|
T Consensus         5 ~~~n~l~d~~~~~~~~~~~lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_           5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCcCCCCCCeEEEEeCCCCCHHHHHHHHhC
Confidence            344444444443221 12234799999999999999999997

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=3.3e-06  Score=70.72  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|.+.+
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5799999999999999999986

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.9e-06  Score=69.21  Aligned_cols=88  Identities=16%  Similarity=0.075  Sum_probs=60.7

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc--cCCCCEEEEEEcCCCCChhhHH-HHHHHHhhCCCcEEEEecCC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ--LSAKRRVIALNKKDLANPNILN-KWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~--~~~kp~IiVlNK~DL~~~~~~~-~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ...+..+|++++|.|...+.+-.+  ..+   .+.  ..+.|+++|.||+|+....... +..++.+..+.+++.+||++
T Consensus        69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~  148 (166)
T d1ctqa_          69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             hhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCC
Confidence            456889999999999976533211  111   111  2457999999999997543322 22333344567889999999


Q ss_pred             ccCHHHHHHHHHHHHh
Q 017187          112 RSSVQKLLELVELKLK  127 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~  127 (375)
                      +.|+++++..+.+.+.
T Consensus       149 g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         149 RQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999988876554

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.98  E-value=2.8e-06  Score=71.15  Aligned_cols=99  Identities=14%  Similarity=0.076  Sum_probs=64.5

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ++|+.. ...-....++++|.+++|.|..++.+..+  ..+.++     ..+.|+++|.||+||.....  .++..++.+
T Consensus        59 ~~g~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~  137 (168)
T d1u8za_          59 TAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD  137 (168)
T ss_dssp             CCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             cccccc-hhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHH
Confidence            566643 22334467889999999999976543222  111121     24678999999999864321  233444444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +.+.+++.+||+++.|++++++.+.+.+.
T Consensus       138 ~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         138 QWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             HHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            55678899999999999999888766553

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4.7e-06  Score=69.63  Aligned_cols=101  Identities=15%  Similarity=0.000  Sum_probs=61.4

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      .+||+- +...-....++.+|++|+|+|...+.+-.+  ..+.+.     ....|+++|.||+||.+...  ..+..++-
T Consensus        54 D~~g~e-~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~  132 (168)
T d2gjsa1          54 DIWEQD-GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA  132 (168)
T ss_dssp             ECC--------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             eccccc-ccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHH
Confidence            367752 221223456889999999999876533221  111111     23468999999999975422  12222233


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+.+++.+||+++.|++++++.+.+.+..
T Consensus       133 ~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         133 VVFDCKFIETSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             HHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            3446788899999999999999888765543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.97  E-value=4.9e-06  Score=69.39  Aligned_cols=88  Identities=18%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCchh--Hhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEE
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAHPG--LQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIA  106 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~~~--l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~  106 (375)
                      ....+..++.+++|+|..+..+.....  ....     ....|+++|.||+|+..........+.+.     ..+.+++.
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  155 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA  155 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEE
Confidence            345678899999999987654322111  1111     35789999999999976544444444432     22346888


Q ss_pred             EecCCccCHHHHHHHHHHHH
Q 017187          107 INAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +||++++|+++++++|.+.+
T Consensus       156 ~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         156 CCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             CBTTTTBTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.7e-06  Score=70.30  Aligned_cols=22  Identities=41%  Similarity=0.614  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|.+.+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhC
Confidence            5799999999999999999986

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=9e-06  Score=67.93  Aligned_cols=88  Identities=16%  Similarity=0.074  Sum_probs=60.5

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhh---c--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQP---Q--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAH  110 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~---~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~  110 (375)
                      ...++.+|++++|+|..++.+-.+  ..+.+   .  ..+.|+++|.||+||.....  .++..++.++.+.+++.+||+
T Consensus        70 ~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak  149 (169)
T d1x1ra1          70 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK  149 (169)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCS
T ss_pred             hhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCC
Confidence            456789999999999986543222  11222   2  24679999999999975422  233344444556788999999


Q ss_pred             Ccc-CHHHHHHHHHHHHh
Q 017187          111 SRS-SVQKLLELVELKLK  127 (375)
Q Consensus       111 ~~~-gvk~Ll~~L~~~l~  127 (375)
                      ++. |+++++..+.+.+.
T Consensus       150 ~~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         150 DPPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             SSCBSHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            875 99999888776653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=6.6e-06  Score=69.03  Aligned_cols=89  Identities=15%  Similarity=0.037  Sum_probs=62.1

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhCCCcEEEEecC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPN--ILNKWVRHFDSCKQDYIAINAH  110 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~g~~vi~iSa~  110 (375)
                      ...+..+|++|+|+|...+.+-.+  ..+...     ..+.|+++|.||+||....  ..++..++.++.+.+++.+||+
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak  151 (173)
T d2fn4a1          72 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK  151 (173)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred             chhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCC
Confidence            466789999999999986533221  111111     2467999999999986432  1223334444567788899999


Q ss_pred             CccCHHHHHHHHHHHHhh
Q 017187          111 SRSSVQKLLELVELKLKE  128 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.|++++++.+.+.+.+
T Consensus       152 ~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         152 LRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999988877654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=5e-06  Score=68.87  Aligned_cols=98  Identities=14%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVR   95 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~   95 (375)
                      +.|.+|+-..........+.++|++|+|+|...+.+-.+  ..+.+.     ..+.|+++|.||+||..+..  .++..+
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~  134 (165)
T d1z06a1          55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK  134 (165)
T ss_dssp             EEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH
Confidence            344556544433334467899999999999987643322  112221     24679999999999965421  222333


Q ss_pred             HHhhCCCcEEEEecCCc---cCHHHHHHHH
Q 017187           96 HFDSCKQDYIAINAHSR---SSVQKLLELV  122 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~---~gvk~Ll~~L  122 (375)
                      +.++.+.+++.+||+++   .+++++.+.|
T Consensus       135 ~~~~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         135 FADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             HHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             HHHHCCCEEEEEecccCCcCcCHHHHHHHh
Confidence            44455678899999875   4777776654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=8e-06  Score=68.41  Aligned_cols=61  Identities=21%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      -++|+|+|.||||||||+|.+.. +.         -........+.+.......+.+. -.+.++||||...
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~-~~---------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   67 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVT-NK---------FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER   67 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH-SC---------CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh-CC---------CCCccccceeeeeeeeeeeecCceeeEeeecccCcce
Confidence            46899999999999999999986 11         11122223344433333333321 1357899999643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.92  E-value=6.7e-06  Score=71.08  Aligned_cols=72  Identities=24%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh-hccccccccc---ccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK---TKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k---~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~  205 (375)
                      +.++|+++|.+++|||||+|+|++. +.......+.   ..........|.|.+.....+ .....+.++||||-..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~   78 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD   78 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHH
Confidence            4589999999999999999999862 1000000000   001112223478887764333 3344689999999643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=9.2e-06  Score=67.66  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=37.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      .++|+++|.+|||||||++.+.+ +.         -.....+.+|..-....+..... -.+.++||+|...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~-~~---------f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~   64 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVS-ND---------FAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER   64 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH-SC---------CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh-CC---------CCccccccccceeeccccccccccccccccccCCchh
Confidence            57899999999999999999986 11         11222334443322222222211 1478899999643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=9.7e-06  Score=67.04  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.+|||||||+|++.+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999999986

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3e-06  Score=70.27  Aligned_cols=89  Identities=20%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhCCCcEEEEecC
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFDSCKQDYIAINAH  110 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~g~~vi~iSa~  110 (375)
                      ....+..+|++++|+|...+.+-.+  ..+...    ....|+++|.||+|+.+..  ..+...++.++.+.+++.+||+
T Consensus        66 ~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk  145 (164)
T d1yzqa1          66 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK  145 (164)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             hHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCC
Confidence            4457899999999999976543322  111111    2467899999999997432  2234444445567788999999


Q ss_pred             CccCHHHHHHHHHHHHh
Q 017187          111 SRSSVQKLLELVELKLK  127 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~  127 (375)
                      ++.|++++.+.|.+.++
T Consensus       146 ~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         146 AGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             TCTTHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHhhC
Confidence            99999999999877654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=5.3e-06  Score=69.27  Aligned_cols=98  Identities=13%  Similarity=0.033  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHHHH-HhhhcCeEEEEEeCCCCCCCCch--hHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           28 FPGHMAAATRAIKH-RLKISDLVIEVRDSRIPLSSAHP--GLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~-~l~~~DlVI~VvDar~p~s~~~~--~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      .||+..  ...+++ .++.+|++|+|+|...+.+..+.  .+...    ....|+++|.||+|+.....  .++..++.+
T Consensus        61 t~G~e~--~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~  138 (169)
T d3raba_          61 TAGQER--YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD  138 (169)
T ss_dssp             ECCSGG--GHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             CCCchh--hHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHH
Confidence            577532  222333 58999999999999765332211  11111    34577888999999865322  123333334


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      +.+.+++.+||+++.|++++++.+.+.+.
T Consensus       139 ~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         139 HLGFEFFEASAKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             HHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HcCCEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            55778999999999999999998877654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=2.2e-06  Score=71.44  Aligned_cols=86  Identities=17%  Similarity=0.062  Sum_probs=59.9

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchhHhhc--------cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEec
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--------LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINA  109 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--------~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa  109 (375)
                      ...+..+|.+|+|.|...+.+..  .+..+        ....|+++|.||+|+.+...  .++..++.++.+..++.+||
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (167)
T d1z0ja1          71 PMYYRGSAAAIIVYDITKEETFS--TLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  148 (167)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             HHHHhhccceEEEeeechhhhhh--hHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence            35678999999999987653322  12111        35678999999999964311  22333334455678899999


Q ss_pred             CCccCHHHHHHHHHHHHh
Q 017187          110 HSRSSVQKLLELVELKLK  127 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l~  127 (375)
                      +++.|+++++..+.+.++
T Consensus       149 k~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         149 KNAININELFIEISRRIP  166 (167)
T ss_dssp             TTTBSHHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHHHhCC
Confidence            999999999998876653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.89  E-value=5.2e-06  Score=69.18  Aligned_cols=62  Identities=19%  Similarity=0.266  Sum_probs=36.1

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS  207 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~  207 (375)
                      ..+..+|++||.||||||||+|+|.+           .....+.+..+.+...  +... +......|++|.....
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~-----------~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~   71 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKD-----------DRLGQHVPTLHPTSEE--LTIA-GMTFTTFDLGGHIQAR   71 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSC-----------C------CCCCCSCEE--EEET-TEEEEEEEECC----C
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhC-----------CCCcceecccccceeE--EEec-ccccccccccchhhhh
Confidence            35678999999999999999999986           2223333333444332  2222 2246778888876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.2e-05  Score=67.94  Aligned_cols=101  Identities=14%  Similarity=0.007  Sum_probs=64.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhhH--HHHHHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNIL--NKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~   97 (375)
                      ..+||-. ...-....++++|.+|+|+|...+.+....  .+...     ....|+++|.||+||.....+  ++..++.
T Consensus        70 dt~G~e~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~  148 (186)
T d2f7sa1          70 DTAGQER-FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA  148 (186)
T ss_dssp             EEESHHH-HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             cCCcchh-hHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH
Confidence            3567632 222223457899999999998764332110  11111     234678899999999643221  2233334


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.+.+++.+||+++.|++++++.+.+.+.+
T Consensus       149 ~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         149 DKYGIPYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             HHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4557789999999999999999988776543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=2.1e-06  Score=72.06  Aligned_cols=23  Identities=17%  Similarity=0.459  Sum_probs=10.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -++|+++|.+|||||||+++|.+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999986

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.2e-05  Score=67.30  Aligned_cols=25  Identities=44%  Similarity=0.409  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|.+|||||||||.+..
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHh
Confidence            4568999999999999999999986

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1e-05  Score=67.88  Aligned_cols=100  Identities=14%  Similarity=0.032  Sum_probs=64.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD   98 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~   98 (375)
                      .+||+.. ........++.+|++|+|+|...+.+...  ..+...    ..+.|+++|.||+|+.+..  .......+.+
T Consensus        59 d~~g~e~-~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  137 (175)
T d2f9la1          59 DTAGQER-YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE  137 (175)
T ss_dssp             ECSSGGG-TTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ccCCcHH-HHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhc
Confidence            3566532 11122355789999999999987633221  112222    2457899999999997542  2222333444


Q ss_pred             hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      ..+.+++.+||+++.|++++++.+.+.+.
T Consensus       138 ~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~  166 (175)
T d2f9la1         138 KNNLSFIETSALDSTNVEEAFKNILTEIY  166 (175)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            55678899999999999999887766543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.1e-05  Score=67.09  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.++|+++|.+|||||||+|.|..
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            357899999999999999999986

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=7.9e-06  Score=67.89  Aligned_cols=23  Identities=43%  Similarity=0.514  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|+|.+
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999996

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.5e-06  Score=71.27  Aligned_cols=87  Identities=13%  Similarity=0.018  Sum_probs=58.4

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEec
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PG---LQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINA  109 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa  109 (375)
                      ...+..+|++|+|+|+..+.+..+  ..   +.+.   ....|+++|.||+|+.+...  .++..++.++.+.+++.+||
T Consensus        68 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  147 (171)
T d2erxa1          68 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSA  147 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred             cccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcC
Confidence            356789999999999976533221  11   1111   24579999999999964321  12223333345678899999


Q ss_pred             CCccCHHHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVELKL  126 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l  126 (375)
                      +++.|++++++.|.+.+
T Consensus       148 k~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         148 KLNHNVKELFQELLNLE  164 (171)
T ss_dssp             TTTBSHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999988877654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.1e-05  Score=67.44  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+|+|.||||||||||++.+
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5899999999999999999986

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.7e-05  Score=66.00  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=37.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV  205 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~  205 (375)
                      ..++|+++|.+|||||||++.|.. +.         -.....+..+.+........... -.+.++||||-..
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~-~~---------f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   67 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVK-GQ---------FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER   67 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH-SC---------CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHh-CC---------CCcccccccccccccceeeccceEEEEEeccCCCchh
Confidence            356899999999999999999996 11         11222233344332222222211 2377899999643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=3.4e-05  Score=64.23  Aligned_cols=86  Identities=13%  Similarity=0.072  Sum_probs=58.2

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHH----HHHHhhC--CCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKW----VRHFDSC--KQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~----~~~~~~~--g~~vi~iSa~~~  112 (375)
                      .....++.++.+.|+..+...........  ....+.++++||+|++++......    .+.+...  ..+++++||+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          94 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             hhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            34556667777788776554433332222  457889999999999987554432    2333222  236899999999


Q ss_pred             cCHHHHHHHHHHHH
Q 017187          113 SSVQKLLELVELKL  126 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l  126 (375)
                      .|+++|++.|.+.+
T Consensus       174 ~Gid~L~~~i~~~~  187 (188)
T d1puia_         174 QGVDKLRQKLDTWF  187 (188)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999887654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.4e-05  Score=66.22  Aligned_cols=24  Identities=38%  Similarity=0.414  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.++|+++|.+|||||||+|++.+
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            357899999999999999999986

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.5e-05  Score=66.19  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..+|+++|.+|||||||+|.+.+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            457899999999999999999986

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=9.1e-06  Score=67.49  Aligned_cols=88  Identities=14%  Similarity=0.013  Sum_probs=58.8

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEec
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINA  109 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa  109 (375)
                      ......++|++++|.|...+.+-.+.  .+...     ..+.|+++|.||+|+.....  .++...+.++.+.+++.+||
T Consensus        68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  147 (167)
T d1kaoa_          68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA  147 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred             hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECC
Confidence            34567899999999998765332211  11111     24579999999999864321  12222333344667899999


Q ss_pred             CCccCHHHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVELKL  126 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l  126 (375)
                      +++.|++++++.+.+.+
T Consensus       148 k~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         148 KSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999988876654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=7.6e-06  Score=67.99  Aligned_cols=86  Identities=14%  Similarity=-0.003  Sum_probs=57.9

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch-----hHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..+..+|++|+|+|...+.+-.+.     .+.+.  ..+.|+++|.||+||.....  .++..++.++.+..++.+||++
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~  150 (167)
T d1xtqa1          71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE  150 (167)
T ss_dssp             GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTC
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCC
Confidence            456799999999999876443221     11111  24579999999999964321  2222333334566788999999


Q ss_pred             ccCHHHHHHHHHHHH
Q 017187          112 RSSVQKLLELVELKL  126 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l  126 (375)
                      +.|++++++.+...+
T Consensus       151 ~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         151 NQTAVDVFRRIILEA  165 (167)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999988775543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.3e-05  Score=67.04  Aligned_cols=88  Identities=15%  Similarity=0.064  Sum_probs=58.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS  111 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~  111 (375)
                      ..++.+|++|+|.|...+.+-.+  ..+...     ..+.|+++|.||+||.+...  .++..++-...+.+++.+||++
T Consensus        73 ~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~  152 (172)
T d2g3ya1          73 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV  152 (172)
T ss_dssp             CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             ccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCC
Confidence            34789999999999876533211  111111     24689999999999865321  1222222234467888899999


Q ss_pred             ccCHHHHHHHHHHHHhh
Q 017187          112 RSSVQKLLELVELKLKE  128 (375)
Q Consensus       112 ~~gvk~Ll~~L~~~l~~  128 (375)
                      +.|+++++..+.+.+..
T Consensus       153 g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         153 QHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999888766543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.8e-06  Score=68.40  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=64.0

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDS   99 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   99 (375)
                      .||+-. -.......++.+|++|+|+|...+.+..+  ..+...    ..+.|+++|.||+|+.....  .....++..+
T Consensus        61 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~  139 (174)
T d2bmea1          61 TAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE  139 (174)
T ss_dssp             ECCSGG-GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCchh-hhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHh
Confidence            666522 11223456889999999999976533221  111111    24689999999999864322  1222333345


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKLK  127 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~  127 (375)
                      .+.+++.+||+++.|+++++.++.+.+.
T Consensus       140 ~~~~~~e~Sak~~~gi~e~f~~l~~~i~  167 (174)
T d2bmea1         140 NELMFLETSALTGENVEEAFVQCARKIL  167 (174)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCcCHHHHHHHHHHHHH
Confidence            5678899999999999999888766543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=2e-05  Score=66.43  Aligned_cols=86  Identities=16%  Similarity=0.064  Sum_probs=58.2

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc-----cCCCCEEEEEEcCCCCChhhHH-HHHHHHh-hCCCcEEEEe
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ-----LSAKRRVIALNKKDLANPNILN-KWVRHFD-SCKQDYIAIN  108 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~-----~~~kp~IiVlNK~DL~~~~~~~-~~~~~~~-~~g~~vi~iS  108 (375)
                      ..+..+|++++|+|...+.+..+  ..+   .+.     ....|+++|.||+||.+..... ...++.. ..+.+++.+|
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECB
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEc
Confidence            45789999999999875433211  111   111     1357999999999997654332 3333333 3456889999


Q ss_pred             cCCccCHHHHHHHHHHHH
Q 017187          109 AHSRSSVQKLLELVELKL  126 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l  126 (375)
                      |+++.|++++++++.+.+
T Consensus       150 ak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         150 AKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999998875544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.2e-05  Score=66.22  Aligned_cols=25  Identities=36%  Similarity=0.462  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -+.++|+++|.+|||||||+|.+.+
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHh
Confidence            3568999999999999999999986

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.1e-05  Score=64.18  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||++.+.+
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.72  E-value=2e-05  Score=64.04  Aligned_cols=97  Identities=18%  Similarity=0.074  Sum_probs=63.3

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHH---
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHF---   97 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~---   97 (375)
                      .||... ...........+|.+++++|...+.+..+.  .+.+.     ....|+++|.||+|+.+.....+.....   
T Consensus        51 ~~g~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~  129 (160)
T d1r8sa_          51 VGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH  129 (160)
T ss_dssp             CCCCGG-GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred             CCCccc-chhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHH
Confidence            444432 233445678999999999998765332211  11111     3467899999999998654433322221   


Q ss_pred             --hhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           98 --DSCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        98 --~~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                        +..+..++.+||++|.|+++++++|.+.
T Consensus       130 ~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         130 SLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             GCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence              1234578899999999999999998754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.6e-05  Score=64.85  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|.+..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            57899999999999999999986

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.9e-05  Score=63.54  Aligned_cols=87  Identities=11%  Similarity=0.061  Sum_probs=58.6

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh-CCCcEEEEec
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHFDS-CKQDYIAINA  109 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~-~g~~vi~iSa  109 (375)
                      ...++.+|++|+|+|...+.+-.+  ..+...     ....|+++|.||+|+.....  .++..++.++ .+..++.+||
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (167)
T d1c1ya_          69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcC
Confidence            356889999999999987543322  111111     24578999999999974422  1222233323 3567888999


Q ss_pred             CCccCHHHHHHHHHHHH
Q 017187          110 HSRSSVQKLLELVELKL  126 (375)
Q Consensus       110 ~~~~gvk~Ll~~L~~~l  126 (375)
                      +++.|++++++.+.+.+
T Consensus       149 k~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         149 KSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHh
Confidence            99999999988886654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=2.3e-05  Score=65.26  Aligned_cols=98  Identities=14%  Similarity=-0.060  Sum_probs=58.4

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--------cCCCCEEEEEEcCCCCChhh---HHHHH
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--------LSAKRRVIALNKKDLANPNI---LNKWV   94 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--------~~~kp~IiVlNK~DL~~~~~---~~~~~   94 (375)
                      .||+. +........++.+|.+++|+|...+.+-..  ..+.++        ....|+++|.||+|+.+...   .+...
T Consensus        59 ~~g~~-~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~  137 (175)
T d1ky3a_          59 TAGQE-RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ  137 (175)
T ss_dssp             CC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred             cCCch-hhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH
Confidence            46653 222333456889999999999976543211  111111        13679999999999975421   12222


Q ss_pred             HHHhhCC-CcEEEEecCCccCHHHHHHHHHHHH
Q 017187           95 RHFDSCK-QDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        95 ~~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      ++.++.+ .+++.+||+++.|++++++.+.+.+
T Consensus       138 ~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         138 ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             HHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            2223333 5788999999999999988876544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.5e-05  Score=66.20  Aligned_cols=97  Identities=12%  Similarity=0.034  Sum_probs=62.8

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDS   99 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   99 (375)
                      +||+.. ...-....++.+|++|+|+|...+.+..+  ..+...    ....|+++|.||+|+.+...  .++..++.++
T Consensus        60 ~~g~~~-~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~  138 (166)
T d1z0fa1          60 TAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE  138 (166)
T ss_dssp             CTTGGG-TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cCCchh-HHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHH
Confidence            566532 11222355789999999999876432211  111111    34578889999999864332  2334444455


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      .+.+++.+||+++.|+++++..+.+.
T Consensus       139 ~~~~~~e~Saktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         139 NGLLFLEASAKTGENVEDAFLEAAKK  164 (166)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            67788999999999999998877654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.5e-05  Score=65.03  Aligned_cols=24  Identities=42%  Similarity=0.415  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.||||||||||.+..
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            357899999999999999999986

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.4e-05  Score=67.52  Aligned_cols=23  Identities=17%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -++|+++|.||||||||+|.|.+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhc
Confidence            46899999999999999999986

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=9.8e-06  Score=67.77  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|++..
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35899999999999999999875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=8.2e-06  Score=68.20  Aligned_cols=86  Identities=20%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             hhhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChh-hHHHHHHHHh-hCC-CcEEEEecCCccCHHHH
Q 017187           43 LKISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPN-ILNKWVRHFD-SCK-QDYIAINAHSRSSVQKL  118 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~-~~~~~~~~~~-~~g-~~vi~iSa~~~~gvk~L  118 (375)
                      ...+|+++++.|+.............+ ....|.++|+||+|+.... ......+.+. +.+ .+++++||+++.|+++|
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L  162 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTI  162 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHH
T ss_pred             hhhcceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHH
Confidence            457899999999875433322222222 3567899999999987543 2333333332 333 47899999999999999


Q ss_pred             HHHHHHHHhh
Q 017187          119 LELVELKLKE  128 (375)
Q Consensus       119 l~~L~~~l~~  128 (375)
                      ++.+.+.+++
T Consensus       163 ~~~i~~~lpe  172 (179)
T d1egaa1         163 AAIVRKHLPE  172 (179)
T ss_dssp             HHHHHTTCCB
T ss_pred             HHHHHHhCCC
Confidence            9999887765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.7e-05  Score=64.64  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||+|++.+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999986

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3.4e-05  Score=64.41  Aligned_cols=87  Identities=13%  Similarity=0.013  Sum_probs=57.8

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHh---hc-cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQ---PQ-LSAKRRVIALNKKDLANPN--ILNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~---~~-~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..+..+|++|+|+|...+.+...  ..+.   +. ..+.|+++|.||+|+....  ..+....+.++.+.+++.+||+++
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg  150 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA  150 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCC
Confidence            45679999999999876543321  1111   11 2467899999999985321  112222333344678899999999


Q ss_pred             cCHHHHHHHHHHHHh
Q 017187          113 SSVQKLLELVELKLK  127 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~  127 (375)
                      .|++++...+.+.+.
T Consensus       151 ~~V~e~f~~i~~~i~  165 (173)
T d2a5ja1         151 CNVEEAFINTAKEIY  165 (173)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999887766543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.9e-05  Score=65.52  Aligned_cols=86  Identities=15%  Similarity=-0.011  Sum_probs=58.9

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..+.++|++|+|+|...+.+-.+  ..+...    ....|+++|.||+||.....  .++..++.++.+.+++.+||+++
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~  150 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN  150 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred             hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCC
Confidence            45789999999999876543221  111111    24567888899999864321  22333444455778899999999


Q ss_pred             cCHHHHHHHHHHHH
Q 017187          113 SSVQKLLELVELKL  126 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l  126 (375)
                      .|++++++.|.+.+
T Consensus       151 ~~v~e~F~~l~~~i  164 (167)
T d1z08a1         151 KGIEELFLDLCKRM  164 (167)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999998876654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2.3e-05  Score=65.59  Aligned_cols=86  Identities=15%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhH----hhccCCCCEEEEEEcCCCCChhhHH--------------HHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGL----QPQLSAKRRVIALNKKDLANPNILN--------------KWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l----~~~~~~kp~IiVlNK~DL~~~~~~~--------------~~~~~~~~~  100 (375)
                      ..+..+|++|+|+|...+.+-.+  ..+    .....+.|+++|.||+|+.+.....              +..++.++.
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~  148 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI  148 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc
Confidence            45789999999999976543221  011    1113568999999999997543211              122222233


Q ss_pred             C-CcEEEEecCCccCHHHHHHHHHHHH
Q 017187          101 K-QDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       101 g-~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      + ..++.+||+++.|++++++.+.+.+
T Consensus       149 ~~~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         149 GAFGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            3 3678899999999999988876543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.4e-05  Score=66.62  Aligned_cols=86  Identities=20%  Similarity=0.115  Sum_probs=58.0

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHh---hc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQ---PQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~---~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..++++|++++|+|...+.+..+  ....   +. ..+.|+++|.||+|+..+..  .+...++.+..+.+++.+||+++
T Consensus        74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g  153 (170)
T d1r2qa_          74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTS  153 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCC
Confidence            46789999999999875433211  1111   11 24678999999999864422  12233333345678899999999


Q ss_pred             cCHHHHHHHHHHHH
Q 017187          113 SSVQKLLELVELKL  126 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l  126 (375)
                      .|++++++.|.+.+
T Consensus       154 ~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         154 MNVNEIFMAIAKKL  167 (170)
T ss_dssp             TTHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999998886554

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=4.1e-05  Score=63.07  Aligned_cols=61  Identities=25%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLV  205 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~  205 (375)
                      -++|+++|.+|||||||+|.+.. +.         -.....+.++.+.......+.. ...+.++|++|...
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA-GR---------FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER   63 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH-SS---------CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh-CC---------CCCccCcccccccceeeeeeeccceEEEEEeccCchh
Confidence            36899999999999999999986 11         1112222333333332322322 22477899999643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=66.44  Aligned_cols=96  Identities=19%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             ccchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      ..||+..  .+.+ ...++.+|++++|+|...+.+-.+  ..+...    ....|+++|.||+|+.+...  .++..++-
T Consensus        60 Dt~G~e~--~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~  137 (171)
T d2ew1a1          60 DTAGQER--FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS  137 (171)
T ss_dssp             EECCSGG--GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             ECCCchh--hHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHH
Confidence            3677522  1222 245789999999999876533211  111111    24578899999999865322  22333333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      +..+.+++.+||+++.|+++++..+..
T Consensus       138 ~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1         138 EAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             HHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            345678899999999999998765543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=1e-05  Score=72.02  Aligned_cols=108  Identities=12%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-----CCCchhHhh-c----cCC
Q 017187            7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-----SSAHPGLQP-Q----LSA   72 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-----s~~~~~l~~-~----~~~   72 (375)
                      -.||+++..+.+.+...+    +-.-|||. .-...+...+..+|.+|+|+||....     ... ++..+ +    ..+
T Consensus        66 r~rGiTi~~~~~~~~~~~~~i~iiDtPGH~-df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~-~QT~eh~~~~~~~g  143 (239)
T d1f60a3          66 RERGITIDIALWKFETPKYQVTVIDAPGHR-DFIKNMITGTSQADCAILIIAGGVGEFEAGISKD-GQTREHALLAFTLG  143 (239)
T ss_dssp             HHTTCCCSCSCEEEECSSEEEEEEECCCCT-THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTT-SHHHHHHHHHHHTT
T ss_pred             hcceeccccceeEeccCCEEEEEEECCCcH-HHHHHHHHHHHHhCEEEEEEECCCCccccccCch-HhHHHHHHHHHHcC
Confidence            467888777666666654    45689995 45566778999999999999997531     111 11111 1    234


Q ss_pred             CC-EEEEEEcCCCCChhh--H----HHHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187           73 KR-RVIALNKKDLANPNI--L----NKWVRHFDSCK-----QDYIAINAHSRSSVQ  116 (375)
Q Consensus        73 kp-~IiVlNK~DL~~~~~--~----~~~~~~~~~~g-----~~vi~iSa~~~~gvk  116 (375)
                      .| +|+++||+|+++.+.  .    .+...++...+     ..++++|+..+.++-
T Consensus       144 v~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         144 VRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             CCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            44 677899999985332  1    22233333222     356889999887753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=2.3e-05  Score=65.43  Aligned_cols=100  Identities=11%  Similarity=-0.001  Sum_probs=58.8

Q ss_pred             cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--------cCCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187           26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--------LSAKRRVIALNKKDLANPNI--LNKWVR   95 (375)
Q Consensus        26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--------~~~kp~IiVlNK~DL~~~~~--~~~~~~   95 (375)
                      -.+||+-.- ..-....++.+|++|+|+|+..+.+-.  .+..+        ..+.|+++|.||+|+.....  .+....
T Consensus        60 ~D~~G~e~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~  136 (173)
T d2fu5c1          60 WDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEK  136 (173)
T ss_dssp             EEC----------CCTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHH
T ss_pred             EECCCchhh-HHHHHHhccCCCEEEEEEECCChhhHH--HHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHH
Confidence            347776321 111223478999999999998764322  12111        35689999999999985422  223334


Q ss_pred             HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      +..+.+.+++.+||+++.|+++++.++.+.+.+
T Consensus       137 ~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         137 LALDYGIKFMETSAKANINVENAFFTLARDIKA  169 (173)
T ss_dssp             HHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            444567788999999999999999988777654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.3e-05  Score=63.89  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+|+|+|.+|||||||++.+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999986

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.64  E-value=3.8e-05  Score=63.88  Aligned_cols=24  Identities=38%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.+|+++|.+|||||||+|.+..
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            346899999999999999999986

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=3.6e-05  Score=63.93  Aligned_cols=98  Identities=10%  Similarity=0.034  Sum_probs=62.9

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-hH----hhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-GL----QPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFD   98 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-~l----~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~   98 (375)
                      ++|.....  .....+..+|.+++|.|...+.+..+- .+    ...  ..+.|+++|.||+||.+...  .++..++.+
T Consensus        57 ~~g~~~~~--~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~  134 (168)
T d2atva1          57 TAGQEDTI--QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT  134 (168)
T ss_dssp             CCCCCCCH--HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             cccccccc--cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH
Confidence            45553322  234567899999999999876443221 11    111  35689999999999964321  223333334


Q ss_pred             hCCCcEEEEecCCccC-HHHHHHHHHHHHh
Q 017187           99 SCKQDYIAINAHSRSS-VQKLLELVELKLK  127 (375)
Q Consensus        99 ~~g~~vi~iSa~~~~g-vk~Ll~~L~~~l~  127 (375)
                      +.+.+++.+||+++.| +++++..+.+.+.
T Consensus       135 ~~~~~~~e~Saktg~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         135 ELACAFYECSACTGEGNITEIFYELCREVR  164 (168)
T ss_dssp             HHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             HhCCeEEEEccccCCcCHHHHHHHHHHHHH
Confidence            4567888999999985 9998887765543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.4e-05  Score=65.24  Aligned_cols=85  Identities=8%  Similarity=0.035  Sum_probs=55.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHh----hccCCCCEEEEEEcCCCCChhhH--------------HHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQ----PQLSAKRRVIALNKKDLANPNIL--------------NKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~----~~~~~kp~IiVlNK~DL~~~~~~--------------~~~~~~~~~~  100 (375)
                      ..+..+|++++|+|+..+.+-.+  ..+.    ....+.|.++|.||+||.+....              ++..++.++.
T Consensus        76 ~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~  155 (185)
T d2atxa1          76 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI  155 (185)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred             hcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHc
Confidence            45788999999999987543221  1111    11356799999999999753211              1222222222


Q ss_pred             C-CcEEEEecCCccCHHHHHHHHHHH
Q 017187          101 K-QDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       101 g-~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                      + ..++.+||+++.|++++++.+.+.
T Consensus       156 ~~~~~~E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         156 GACCYVECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             TCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCcCHHHHHHHHHHH
Confidence            3 467789999999999998877554

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.6e-05  Score=65.38  Aligned_cols=23  Identities=39%  Similarity=0.491  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+++|.+|||||||++.+..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999999986

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.6e-05  Score=64.83  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.++|+|+|.+|||||||+|.+..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHh
Confidence            468999999999999999999986

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=5.5e-05  Score=63.86  Aligned_cols=24  Identities=38%  Similarity=0.423  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++|+++|.+|||||||+|.+..
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhh
Confidence            357899999999999999999986

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=6.9e-05  Score=62.41  Aligned_cols=88  Identities=14%  Similarity=0.011  Sum_probs=58.5

Q ss_pred             HHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc-----cCCCCEEEEEEcCCCCChhh-HHHHHHHHhhC-CCcEEE
Q 017187           39 IKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ-----LSAKRRVIALNKKDLANPNI-LNKWVRHFDSC-KQDYIA  106 (375)
Q Consensus        39 i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~-----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~-g~~vi~  106 (375)
                      ....+..+|+++++.|...+.+-..     +.+.++     ..+.|+++|.||+|+.+... .++..++.++. ..+++.
T Consensus        72 ~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred             hhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEE
Confidence            3456789999999999876543221     112221     13579999999999975432 22233333333 357889


Q ss_pred             EecCCccCHHHHHHHHHHHH
Q 017187          107 INAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       107 iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +||+++.|++++++.+.+.+
T Consensus       152 ~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHH
Confidence            99999999999988775543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.54  E-value=3.7e-05  Score=66.30  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+.++|+++|..++|||||+|+|++
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            4568999999999999999999985

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=6.1e-05  Score=64.12  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..++++|++|+|+|+..+.+....     .+.+. ....|+++|.||+|+.+...  .+.........+..++.+||+++
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g  153 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDS  153 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTC
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcC
Confidence            457899999999998754322111     01111 34678999999999986432  22333334455678899999999


Q ss_pred             cCHHHHHHHHHHHHhh
Q 017187          113 SSVQKLLELVELKLKE  128 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~  128 (375)
                      .|++++++.+.+.+.+
T Consensus       154 ~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         154 TNVEDAFLTMARQIKE  169 (194)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            9999998888766544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.52  E-value=4.9e-05  Score=66.77  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=23.0

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +...++++++|..++|||||+++|+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHH
Confidence            35568999999999999999999975

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.0001  Score=60.93  Aligned_cols=24  Identities=38%  Similarity=0.429  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.++|+++|.+|||||||++.+..
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            357899999999999999999986

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=8.1e-05  Score=61.85  Aligned_cols=24  Identities=50%  Similarity=0.596  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.++|+++|.+|||||||+|.+.+
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            467899999999999999999986

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=7e-05  Score=61.78  Aligned_cols=88  Identities=11%  Similarity=0.042  Sum_probs=61.2

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchh--Hhhc----cCCCCEEEEEEcCCCCChhhHH-HHHHHHhhCCCcEEEEecCCcc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPG--LQPQ----LSAKRRVIALNKKDLANPNILN-KWVRHFDSCKQDYIAINAHSRS  113 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~--l~~~----~~~kp~IiVlNK~DL~~~~~~~-~~~~~~~~~g~~vi~iSa~~~~  113 (375)
                      ..++++|.+|+|+|...+.+..+..  ....    ....|.+++.||.|+.+..... ...++..+.+.+++.+||+++.
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  149 (166)
T d1g16a_          70 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDD  149 (166)
T ss_dssp             HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred             HHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCC
Confidence            5678999999999998764322211  1111    2457789999999987543322 2223333456789999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 017187          114 SVQKLLELVELKLKE  128 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~  128 (375)
                      |++++++.+.+.+.+
T Consensus       150 ~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         150 NVNEIFFTLAKLIQE  164 (166)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999988777654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.8e-05  Score=62.11  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -++|+++|.+|||||||+|.+.+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999999986

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00011  Score=60.90  Aligned_cols=98  Identities=12%  Similarity=0.041  Sum_probs=62.2

Q ss_pred             ccchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCch--hHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187           27 WFPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF   97 (375)
Q Consensus        27 wfpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~   97 (375)
                      .+||+-.-  +.+ ...+.++|++++|+|...+.+....  .+...    ....|+++|.||+|+..+..  .++..++.
T Consensus        62 Dt~G~e~~--~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~  139 (170)
T d2g6ba1          62 DTAGQERF--RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA  139 (170)
T ss_dssp             ECCCC----------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHH
T ss_pred             ECCCchhh--HHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHH
Confidence            37887332  222 2357899999999998765432211  11111    24578899999999876422  12223333


Q ss_pred             hhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           98 DSCKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      +..+.+++.+||+++.|++++++.+.+.+
T Consensus       140 ~~~~~~~~e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         140 KEYGLPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCcCHHHHHHHHHHHc
Confidence            44567899999999999999988887654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.6e-05  Score=63.61  Aligned_cols=86  Identities=9%  Similarity=0.030  Sum_probs=55.8

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch--hHh----hccCCCCEEEEEEcCCCCChhhHH--------------HHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP--GLQ----PQLSAKRRVIALNKKDLANPNILN--------------KWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~--~l~----~~~~~kp~IiVlNK~DL~~~~~~~--------------~~~~~~~~~  100 (375)
                      ..+..+|++++|+|+..+.+-.+.  .+.    ....+.|+++|.||+||.+.....              ...++.++.
T Consensus        72 ~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  151 (183)
T d1mh1a_          72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  151 (183)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             hcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHc
Confidence            457899999999999765332111  111    113568999999999986543211              111222222


Q ss_pred             C-CcEEEEecCCccCHHHHHHHHHHHH
Q 017187          101 K-QDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       101 g-~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      + ..++.+||+++.|++++++.+.+.+
T Consensus       152 ~~~~~~E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         152 GAVKYLECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCcCHHHHHHHHHHHH
Confidence            3 4678899999999999988776543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.38  E-value=0.00021  Score=57.91  Aligned_cols=88  Identities=19%  Similarity=0.121  Sum_probs=60.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCchh--Hhh-c----cCCCCEEEEEEcCCCCChhhHHHHHHHH-----hhCCCcEEEEe
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHPG--LQP-Q----LSAKRRVIALNKKDLANPNILNKWVRHF-----DSCKQDYIAIN  108 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~~--l~~-~----~~~kp~IiVlNK~DL~~~~~~~~~~~~~-----~~~g~~vi~iS  108 (375)
                      .....++.++.++|...........  +.. .    ....|+++|.||.|+.......+....+     .....+++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  147 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS  147 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            4578899999999987544332111  111 1    3457889999999998654433333332     12345789999


Q ss_pred             cCCccCHHHHHHHHHHHHhh
Q 017187          109 AHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l~~  128 (375)
                      |+++.|+++++++|.+.+++
T Consensus       148 A~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         148 ATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999887654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.37  E-value=4e-05  Score=68.30  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=50.7

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-------CCCchhH---hhccCCCCEEEEEEcCCCCChh----hH
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-------SSAHPGL---QPQLSAKRRVIALNKKDLANPN----IL   90 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-------s~~~~~l---~~~~~~kp~IiVlNK~DL~~~~----~~   90 (375)
                      +-.-|||. .-...+...+..+|.+++|+||....       ..+-...   .....-+++++++||+|+...+    ..
T Consensus       106 ~iDtPGH~-df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~  184 (245)
T d1r5ba3         106 LLDAPGHK-GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY  184 (245)
T ss_dssp             ECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred             eecccccc-cchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHH
Confidence            45679995 45667778899999999999997642       1111111   1113334577889999997432    12


Q ss_pred             HHHH----HHHhhC-C------CcEEEEecCCccCHHHHH
Q 017187           91 NKWV----RHFDSC-K------QDYIAINAHSRSSVQKLL  119 (375)
Q Consensus        91 ~~~~----~~~~~~-g------~~vi~iSa~~~~gvk~Ll  119 (375)
                      ++..    .++++. +      .+++++||.+|.|+.+++
T Consensus       185 ~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         185 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            2222    222221 1      357999999999986643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00018  Score=60.03  Aligned_cols=87  Identities=18%  Similarity=0.061  Sum_probs=60.4

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh-HHHHHHHHhhCCCcEEEEecCCc
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI-LNKWVRHFDSCKQDYIAINAHSR  112 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~g~~vi~iSa~~~  112 (375)
                      ..+..+|++|+|+|...+.+...  ..+.++     ....|++++.||.|+..... .++..++.++.+..++.+||+++
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg  154 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTC  154 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCC
Confidence            56789999999999876433211  112221     23467889999999865432 23444555566778999999999


Q ss_pred             cCHHHHHHHHHHHHh
Q 017187          113 SSVQKLLELVELKLK  127 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~  127 (375)
                      .|++++++++.+.+.
T Consensus       155 ~gv~e~f~~l~~~l~  169 (177)
T d1x3sa1         155 DGVQCAFEELVEKII  169 (177)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHc
Confidence            999999987766543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00014  Score=61.39  Aligned_cols=22  Identities=18%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 017187          135 TLLVMVVGVPNVGKSALINSIH  156 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~  156 (375)
                      .++++++|.+|||||||++.+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4789999999999999999995

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.32  E-value=0.00032  Score=63.08  Aligned_cols=79  Identities=11%  Similarity=-0.014  Sum_probs=55.6

Q ss_pred             HHHhcccccceEEeeC--CCc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEE
Q 017187            6 IIKKGLGLGEMGFTKG--GGN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIAL   79 (375)
Q Consensus         6 ~~~~~~~~g~~~~~~~--~~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVl   79 (375)
                      -..|++.+........  +.+  +-.-|||.. -...+...+.-+|.+|+|+||..+....-..+.+.  ..++|+++++
T Consensus        48 E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d-F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~i  126 (267)
T d2dy1a2          48 AKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD-FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVV  126 (267)
T ss_dssp             HHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHhCCeEEeecccccccccceeEEccCchhh-hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccc
Confidence            3466666555444433  333  345899954 45567789999999999999998766544444443  4679999999


Q ss_pred             EcCCCC
Q 017187           80 NKKDLA   85 (375)
Q Consensus        80 NK~DL~   85 (375)
                      ||+|..
T Consensus       127 Nk~D~~  132 (267)
T d2dy1a2         127 TKLDKG  132 (267)
T ss_dssp             ECGGGC
T ss_pred             cccccc
Confidence            999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.32  E-value=7.7e-05  Score=65.30  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC----CchhH------hhccCCCCEEEEEEcCCCCChhh----H
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS----AHPGL------QPQLSAKRRVIALNKKDLANPNI----L   90 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~----~~~~l------~~~~~~kp~IiVlNK~DL~~~~~----~   90 (375)
                      +-..||| ..-...+...+.-+|.+|+|+||......    ..++.      ......+++|+++||+|+..+..    .
T Consensus        85 iiDtPGH-~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~  163 (224)
T d1jnya3          85 IIDAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRY  163 (224)
T ss_dssp             ECCCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred             EeeCCCc-HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHHH
Confidence            5679999 56667788889999999999999764211    01122      12244557888899999975321    1


Q ss_pred             H----HHHHHHhhC-----CCcEEEEecCCccCHH
Q 017187           91 N----KWVRHFDSC-----KQDYIAINAHSRSSVQ  116 (375)
Q Consensus        91 ~----~~~~~~~~~-----g~~vi~iSa~~~~gvk  116 (375)
                      +    ....++...     ..+++++|+..+.++.
T Consensus       164 ~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         164 KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            1    111222222     2357899999887753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=6e-05  Score=62.46  Aligned_cols=87  Identities=11%  Similarity=0.043  Sum_probs=59.0

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchh--Hhhc----cCCCCEEEEEEcCCCCChh-----hHHHHHHHHhhCCCcEEEEe
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPG--LQPQ----LSAKRRVIALNKKDLANPN-----ILNKWVRHFDSCKQDYIAIN  108 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~--l~~~----~~~kp~IiVlNK~DL~~~~-----~~~~~~~~~~~~g~~vi~iS  108 (375)
                      ...+..+|++|+|+|...+.+..+..  +...    ....|.++|.||+|+.+..     ..++..++.++.+.+++.+|
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~S  149 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETS  149 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEec
Confidence            35688999999999998754432211  1111    3457899999999985321     11223334445567889999


Q ss_pred             cCCccCHHHHHHHHHHHH
Q 017187          109 AHSRSSVQKLLELVELKL  126 (375)
Q Consensus       109 a~~~~gvk~Ll~~L~~~l  126 (375)
                      |+++.|+++++..|.+.+
T Consensus       150 ak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         150 AKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             TTTCTTHHHHHHHHHTTS
T ss_pred             CCCCcCHHHHHHHHHHHh
Confidence            999999999988876543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00013  Score=61.64  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=55.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch--hHhhc----cCCCCEEEEEEcCCCCChhhH--------------HHHHHHHhh-
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP--GLQPQ----LSAKRRVIALNKKDLANPNIL--------------NKWVRHFDS-   99 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~--~l~~~----~~~kp~IiVlNK~DL~~~~~~--------------~~~~~~~~~-   99 (375)
                      ..+..+|++++|+|...+.+-.+-  .+...    ..+.|+++|.||+||.+....              +...++..+ 
T Consensus        70 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (191)
T d2ngra_          70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL  149 (191)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred             hcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc
Confidence            446799999999999876432111  11111    356899999999998643211              111112222 


Q ss_pred             CCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187          100 CKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus       100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      .+..++.+||+++.|++++++.+...+
T Consensus       150 ~~~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         150 KAVKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            235678899999999999988776554

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00017  Score=60.54  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+|+++|.+|||||||++.+..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.22  E-value=0.00022  Score=61.94  Aligned_cols=81  Identities=19%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             hcCeEEEEEeCCCCCCCCchh---Hhhc----cCCCCEEEEEEcCCCCChhhHHHHHHHH--------------------
Q 017187           45 ISDLVIEVRDSRIPLSSAHPG---LQPQ----LSAKRRVIALNKKDLANPNILNKWVRHF--------------------   97 (375)
Q Consensus        45 ~~DlVI~VvDar~p~s~~~~~---l~~~----~~~kp~IiVlNK~DL~~~~~~~~~~~~~--------------------   97 (375)
                      ..++++.|+|+..........   +...    ....|.++|+||+|+.+.+....+..+.                    
T Consensus       123 ~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (244)
T d1yrba1         123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLM  202 (244)
T ss_dssp             SSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHH
T ss_pred             cCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            456899999986443322111   1111    2357899999999999875443322111                    


Q ss_pred             --------h--hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187           98 --------D--SCKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus        98 --------~--~~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                              +  ....+++++||++++|+++|+..|.++
T Consensus       203 ~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         203 AYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence                    0  113468999999999999999998775

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.12  E-value=0.0003  Score=57.89  Aligned_cols=86  Identities=12%  Similarity=0.003  Sum_probs=57.0

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchh--Hhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-------------
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPG--LQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS-------------   99 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~--l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-------------   99 (375)
                      .......+.+++++|..++....+..  +...     ..++|.+++.||.|+..........+.+..             
T Consensus        75 ~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  154 (186)
T d1f6ba_          75 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK  154 (186)
T ss_dssp             GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             hhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHH
Confidence            35678999999999987643322111  1111     357899999999998654333333333310             


Q ss_pred             ----CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187          100 ----CKQDYIAINAHSRSSVQKLLELVELK  125 (375)
Q Consensus       100 ----~g~~vi~iSa~~~~gvk~Ll~~L~~~  125 (375)
                          .+..++.+||++|+|+++++++|.+.
T Consensus       155 ~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         155 ELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             TCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence                11247889999999999999998654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.0003  Score=63.55  Aligned_cols=69  Identities=17%  Similarity=0.144  Sum_probs=37.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh-hhccccccccc-ccccccCCC------CCeeeeeE--EEEEccCCcEEEEEcCCCCCC
Q 017187          137 LVMVVGVPNVGKSALINSIHQ-IALSRFPVQEK-TKRATVGPL------PGVTQDIA--GFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k-~~~~~v~~~------pg~T~~~~--~~~i~~~~~~~liDTPGi~~~  206 (375)
                      +|+++|..++|||||+.+|+- .|.+..  .|+ ...+++.+.      -|.|....  .+. +.+..+.++||||...+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~-~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHK--IGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCCCCSEEEEE-ETTEEEEEECCCSSSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcccc--ccceecCceEEeccHHHHhcCCccccceeeec-cCCeEEEEecCCchhhh
Confidence            699999999999999999874 222211  000 001111111      13333322  222 33446899999999875


Q ss_pred             CC
Q 017187          207 SI  208 (375)
Q Consensus       207 ~~  208 (375)
                      ..
T Consensus        85 ~~   86 (276)
T d2bv3a2          85 TI   86 (276)
T ss_dssp             ST
T ss_pred             HH
Confidence            43

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00034  Score=56.18  Aligned_cols=85  Identities=14%  Similarity=0.042  Sum_probs=55.5

Q ss_pred             HHHhhhcCeEEEEEeCCCCCCCCchh--Hh---hc--cCCCCEEEEEEcCCCCChhhHHHHHHHHh------------hC
Q 017187           40 KHRLKISDLVIEVRDSRIPLSSAHPG--LQ---PQ--LSAKRRVIALNKKDLANPNILNKWVRHFD------------SC  100 (375)
Q Consensus        40 ~~~l~~~DlVI~VvDar~p~s~~~~~--l~---~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~------------~~  100 (375)
                      ......++.+++++|...+.......  +.   ..  ....|++++.||.|+.......+..+.+.            ..
T Consensus        62 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  141 (166)
T d2qtvb1          62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR  141 (166)
T ss_dssp             GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSC
T ss_pred             hhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccC
Confidence            35578899999999987643321110  01   10  24678999999999975433333333331            11


Q ss_pred             CCcEEEEecCCccCHHHHHHHHHH
Q 017187          101 KQDYIAINAHSRSSVQKLLELVEL  124 (375)
Q Consensus       101 g~~vi~iSa~~~~gvk~Ll~~L~~  124 (375)
                      +..++.+||++++|+++++++|.+
T Consensus       142 ~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         142 PVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CCEEEEeeCCCCCCHHHHHHHHhC
Confidence            235788999999999999998853

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00029  Score=58.96  Aligned_cols=86  Identities=16%  Similarity=0.104  Sum_probs=54.6

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCch--hHhh----ccCCCCEEEEEEcCCCCChhh--------------HHHHHHHHhhC
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAHP--GLQP----QLSAKRRVIALNKKDLANPNI--------------LNKWVRHFDSC  100 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~~--~l~~----~~~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~~~  100 (375)
                      ..++.+|++|+|+|...+.+-.+.  .+..    ...+.|+++|.||+|+.+...              .++..++.++.
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~  148 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  148 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh
Confidence            457899999999999765432110  1111    135789999999999864211              11222222233


Q ss_pred             C-CcEEEEecCCcc-CHHHHHHHHHHHH
Q 017187          101 K-QDYIAINAHSRS-SVQKLLELVELKL  126 (375)
Q Consensus       101 g-~~vi~iSa~~~~-gvk~Ll~~L~~~l  126 (375)
                      + ..++.+||+++. +++++++.+...+
T Consensus       149 ~~~~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         149 GAATYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence            3 356779999997 5999988776554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.00046  Score=57.50  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++++|..|||||||++.+..
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Confidence            57899999999999999999875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0006  Score=61.58  Aligned_cols=64  Identities=23%  Similarity=0.242  Sum_probs=39.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCC-CCCeeeeeE-E-EEEc--cCCcEEEEEcCCCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP-LPGVTQDIA-G-FKIA--HRPSIYVLDTPGVLVPSI  208 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~-~pg~T~~~~-~-~~i~--~~~~~~liDTPGi~~~~~  208 (375)
                      -..|.|+|...+|||+|+|.|++...          ...++. ...+|+.+- + ..+.  ....++++||.|+..+..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~----------~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~  100 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKK----------GFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK  100 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSS----------CSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCC----------CCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccccc
Confidence            34788999999999999999997321          111111 112344432 2 1122  223488999999988653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00068  Score=57.64  Aligned_cols=60  Identities=23%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc-------cCCCCEEEEEEcCCCCCh
Q 017187           28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ-------LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~-------~~~kp~IiVlNK~DL~~~   87 (375)
                      +|||-......+...+..+|.+++|+|+.+......   ..+.++       ....|+++|+||+||.+.
T Consensus        54 ~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          54 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             ccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            788865444556677899999999999875322111   112221       234688889999999753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00079  Score=56.22  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++++|.+|||||||++.+..
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999999999975

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.85  E-value=0.00092  Score=59.96  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|..++|||||+.+|+.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            699999999999999999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0012  Score=55.05  Aligned_cols=94  Identities=13%  Similarity=-0.058  Sum_probs=57.5

Q ss_pred             ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hH---hhc----cCCCCEEEEEEcCCCCChhh----HHHH
Q 017187           27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GL---QPQ----LSAKRRVIALNKKDLANPNI----LNKW   93 (375)
Q Consensus        27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l---~~~----~~~kp~IiVlNK~DL~~~~~----~~~~   93 (375)
                      +.+|++..      ..++.+|++|+|+|...+.+-.+.  ..   ...    ....|+++|.||.|+.....    .++.
T Consensus        58 Dt~g~~~~------~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~  131 (175)
T d2bmja1          58 EEAGAPDA------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA  131 (175)
T ss_dssp             ECSSCCCH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHH
T ss_pred             eccccccc------ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHH
Confidence            35666532      357789999999998765332110  11   111    13457899999999753211    1122


Q ss_pred             HHHHhh-CCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           94 VRHFDS-CKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        94 ~~~~~~-~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                      .++..+ .+..++.+||+++.|+++++..+.+.+
T Consensus       132 ~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         132 RALCADMKRCSYYETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             HHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHH
Confidence            233333 245678899999999999877665544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.00071  Score=61.01  Aligned_cols=80  Identities=21%  Similarity=0.136  Sum_probs=51.9

Q ss_pred             HHhcccccceEEeeCC--Cc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEE
Q 017187            7 IKKGLGLGEMGFTKGG--GN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALN   80 (375)
Q Consensus         7 ~~~~~~~g~~~~~~~~--~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlN   80 (375)
                      ..||+.+........-  .+  +-.-|||- .-...+...+.-+|.+|+|+||..+....-..+-+.  ..+.|+|+++|
T Consensus        53 ~~r~~si~~~~~~~~~~~~~~n~iDtPG~~-dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fIN  131 (276)
T d2bv3a2          53 RERGITITAAVTTCFWKDHRINIIDAPGHV-DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFAN  131 (276)
T ss_dssp             --CCCCCCCSEEEEEETTEEEEEECCCSSS-SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             HhcCCccccceeeeccCCeEEEEecCCchh-hhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEe
Confidence            3455544443333333  22  33478884 344556788899999999999988766544333333  46899999999


Q ss_pred             cCCCCCh
Q 017187           81 KKDLANP   87 (375)
Q Consensus        81 K~DL~~~   87 (375)
                      |+|....
T Consensus       132 KmDr~~a  138 (276)
T d2bv3a2         132 KMDKTGA  138 (276)
T ss_dssp             CTTSTTC
T ss_pred             ccccccc
Confidence            9997654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00068  Score=59.82  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..++|+++|..+.|||||+.+|+-
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHH
Confidence            3458999999999999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.001  Score=61.39  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=23.5

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .....+|+|.|.||||||||+|+|..
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            46689999999999999999999975

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0019  Score=59.86  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             Cce-EEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTL-LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~-~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+ +|+|+|..+.|||||+.+|+.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHH
Confidence            345 599999999999999999875

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.00084  Score=58.37  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.++|+++|..+.|||||+.+|+.
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEEecCCCCHHHHHHHHHH
Confidence            468999999999999999999863

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.37  E-value=0.00087  Score=55.05  Aligned_cols=22  Identities=32%  Similarity=0.744  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||+|||||++.|.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            3699999999999999999987

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.00093  Score=54.19  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+.|+|.||+|||||+|.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999985

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.29  E-value=0.0011  Score=55.81  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.-|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999985

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.26  E-value=0.0032  Score=54.26  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=35.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP  206 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~  206 (375)
                      ..+|+++|.+|||||||++.+..           ....   ++-|.+.  ..+.+.. -.+.++|+.|-...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~-----------~~~~---pTiG~~~--~~~~~~~-~~~~~~D~~Gq~~~   60 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRI-----------LHVV---LTSGIFE--TKFQVDK-VNFHMFDVGGQRDE   60 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH-----------HHCC---CCCSCEE--EEEEETT-EEEEEEECCCSTTT
T ss_pred             cCEEEEECCCCCCHHHHHHHHhc-----------CCcC---CCCCeEE--EEEEECc-EEEEEEecCcccee
Confidence            46899999999999999999874           1111   2223221  1232332 25788999996543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.17  E-value=0.0011  Score=58.56  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++|+++|..++|||||+.+|+.
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHH
Confidence            4467899999999999999999863

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.10  E-value=0.0032  Score=57.83  Aligned_cols=26  Identities=35%  Similarity=0.563  Sum_probs=23.4

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .....+|+|.|.|||||||||+.|..
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            45678999999999999999999875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.07  E-value=0.0013  Score=53.60  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-+|+|+|.||||||||.++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999986

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.05  E-value=0.0018  Score=52.73  Aligned_cols=25  Identities=20%  Similarity=0.509  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++|++.|.|||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999999975

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.97  E-value=0.0019  Score=55.61  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.|+|+|++|+|||||+++|+.
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3589999999999999999985

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.89  E-value=0.0028  Score=51.44  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..|.++|.||+||||+-+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5678899999999999999999985

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.64  E-value=0.0031  Score=52.43  Aligned_cols=21  Identities=29%  Similarity=0.618  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -++++|.||||||||++.|..
T Consensus         4 iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999999986

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.59  E-value=0.0031  Score=50.18  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -|+++|.||+||||+.+.|..
T Consensus         4 lIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.58  E-value=0.0086  Score=49.29  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=23.5

Q ss_pred             ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          131 SREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       131 ~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....++.|+|.|.+|+|||||.+.|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999999985

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.55  E-value=0.0032  Score=51.36  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.|+|++|+|||||++.|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.019  Score=47.74  Aligned_cols=64  Identities=25%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             cccchhHH---HHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhc--------cCCCCEEEEEEcCCCCChhh
Q 017187           26 NWFPGHMA---AATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQ--------LSAKRRVIALNKKDLANPNI   89 (375)
Q Consensus        26 ~wfpgHm~---k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~--------~~~kp~IiVlNK~DL~~~~~   89 (375)
                      -..|||..   ...+.....+..+|.++.++|+.....+...   .+.+.        ..++|+++|+||+|+.+...
T Consensus        51 ~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          51 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             EECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            34777763   2334555678888999999998754333221   11111        25789999999999976443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.42  E-value=0.0033  Score=50.79  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+|+++|.|||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999975

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0015  Score=60.56  Aligned_cols=60  Identities=22%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187           25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA   85 (375)
Q Consensus        25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~   85 (375)
                      +-.-|||.. -..++...+.-+|.+|+|+||..+....-..+.+.  ..+.|+++++||+|..
T Consensus       100 liDtPGh~d-F~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         100 LIDSPGHVD-FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EECCCCCCS-SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             EEcCCCcHH-HHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            356799954 44556678889999999999998776654444443  4679999999999953

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.30  E-value=0.0044  Score=49.80  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -|+++|.|||||||+.+.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999986

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.0049  Score=52.72  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-++|+|.||||||||+|.|+.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999986

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.011  Score=54.22  Aligned_cols=83  Identities=11%  Similarity=0.040  Sum_probs=47.9

Q ss_pred             hhhcCeEEEEEeCCCCCCCCchhHhh-ccCCCCEEEEEEcCCCCChhhHHHHHHH-------Hhh----CCCcEEEEecC
Q 017187           43 LKISDLVIEVRDSRIPLSSAHPGLQP-QLSAKRRVIALNKKDLANPNILNKWVRH-------FDS----CKQDYIAINAH  110 (375)
Q Consensus        43 l~~~DlVI~VvDar~p~s~~~~~l~~-~~~~kp~IiVlNK~DL~~~~~~~~~~~~-------~~~----~g~~vi~iSa~  110 (375)
                      ...+|.+++|++...   ....+... -....+=++|+||+|+..........+.       +..    ...+++.+||.
T Consensus       165 ~~~aD~~l~v~~P~~---Gd~iq~~k~gi~e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~  241 (327)
T d2p67a1         165 ARMVDCFISLQIAGG---GDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSAL  241 (327)
T ss_dssp             HTTCSEEEEEECC---------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGG
T ss_pred             hhccceEEEEecCCC---chhhhhhchhhhccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEee
Confidence            345677777775421   11111111 1112344899999999875543322222       211    12368999999


Q ss_pred             CccCHHHHHHHHHHHHhh
Q 017187          111 SRSSVQKLLELVELKLKE  128 (375)
Q Consensus       111 ~~~gvk~Ll~~L~~~l~~  128 (375)
                      ++.|+++|.+.|.++...
T Consensus       242 ~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         242 EKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             GTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999877543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.006  Score=50.81  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -++++|.+||||+||++.|+.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999986

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.13  E-value=0.011  Score=51.41  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+.-++++|.||+|||||..+|.+
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34456699999999999999999986

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.01  E-value=0.0079  Score=50.08  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++..|+|+|.||+||||+...|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5667899999999999999999975

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.96  E-value=0.0057  Score=49.73  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+|.|.|||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999975

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.84  E-value=0.035  Score=50.58  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             CEEEEEEcCCCCChhhHHH-----HHHHHh-------hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           74 RRVIALNKKDLANPNILNK-----WVRHFD-------SCKQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        74 p~IiVlNK~DL~~~~~~~~-----~~~~~~-------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                      .=++|+||+|+.+......     +...+.       ....+++.+|+.++.|+++|.+.+.++...
T Consensus       191 aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            3499999999876654322     222221       012379999999999999999999887654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.78  E-value=0.007  Score=50.30  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++|+|+|.||+||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999975

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.78  E-value=0.0057  Score=49.84  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|+|||||||+-+.|..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999975

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0047  Score=51.01  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++..|.++|.||+||||+-+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467888999999999999999975

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.76  E-value=0.015  Score=50.01  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhh-hccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          116 QKLLELVELKLKEV-ISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       116 k~Ll~~L~~~l~~~-~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++.+.+...+... ......-.+++.|.||+||||+.+++.+
T Consensus        15 ~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          15 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            44444444443321 1122345689999999999999999986

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.74  E-value=0.0079  Score=49.94  Aligned_cols=89  Identities=13%  Similarity=0.026  Sum_probs=54.3

Q ss_pred             HHHHHhhhcCeEEEEEeCCCCCCCCc------h------hHhhc-----cCCCCEEEEEEcCCCCChh------------
Q 017187           38 AIKHRLKISDLVIEVRDSRIPLSSAH------P------GLQPQ-----LSAKRRVIALNKKDLANPN------------   88 (375)
Q Consensus        38 ~i~~~l~~~DlVI~VvDar~p~s~~~------~------~l~~~-----~~~kp~IiVlNK~DL~~~~------------   88 (375)
                      ......+.++.+++++|.........      .      .+...     ..+.|+++|+||+|+....            
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~  139 (200)
T d1zcba2          60 RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLE  139 (200)
T ss_dssp             -CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTT
T ss_pred             cccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCcc
Confidence            33455788999999999875433210      0      01111     3578999999999975321            


Q ss_pred             ------hHHH----HHHHHhhC-------CCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           89 ------ILNK----WVRHFDSC-------KQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        89 ------~~~~----~~~~~~~~-------g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                            ....    ..+.|...       .+.++.+||+++.+++.+.+.+.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         140 FEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             CCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence                  1111    22233211       12355689999999999999887765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0075  Score=47.71  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+++|.|||||||+-..|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999975

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.66  E-value=0.0089  Score=48.94  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+|+|.||+||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.66  E-value=0.0095  Score=49.44  Aligned_cols=24  Identities=17%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++++++++|.||+||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999985

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.64  E-value=0.021  Score=48.74  Aligned_cols=38  Identities=16%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++.+.+...+..    ...-.+++.|.||+||||++.+|..
T Consensus        30 ~~~~~~l~~~i~~----~~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          30 EHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             HHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4555555555544    3334689999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.0084  Score=52.61  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++-.++|+|.+|+|||||++.|.+
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999999998

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.01  Score=49.03  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+.-|+++|.||+||||+...|..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.008  Score=50.13  Aligned_cols=20  Identities=25%  Similarity=0.587  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      |+|+|.|||||+||++.|..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999986

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.53  E-value=0.021  Score=49.12  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.+.++|...+..  .....-.+++.|.||+|||++++.|..
T Consensus        25 i~~l~~~l~~~l~~--~~~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          25 LQQLDILLGNWLRN--PGHHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             HHHHHHHHHHHHHS--TTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCCCCCceEEECCCCCCHHHHHHHHHH
Confidence            56666666655432  123445799999999999999999986

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.50  E-value=0.01  Score=52.02  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++-.++++|.+|+|||||++.|.+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999999997

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0095  Score=48.11  Aligned_cols=21  Identities=38%  Similarity=0.683  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|.+.|.||+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999876

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.49  E-value=0.0092  Score=52.72  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++-.+++||.+|+|||||++.|.+
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhc
Confidence            3445799999999999999999997

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.41  E-value=0.009  Score=48.74  Aligned_cols=20  Identities=35%  Similarity=0.768  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|.|.|||||||+++.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999975

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.41  E-value=0.01  Score=47.72  Aligned_cols=21  Identities=19%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -|++.|.||+||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.011  Score=52.05  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++-.++++|.+|+|||||++.|.+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3445799999999999999999997

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.016  Score=46.56  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+--++++|.||+||||+.+.|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345577899999999999999986

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.011  Score=49.42  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      |+|+|.|||||+||.+.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999986

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.21  E-value=0.014  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +--|++.|.||+||||+.+.|..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999985

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.14  E-value=0.015  Score=48.53  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+.++|+++|.||+||||+-..|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999986

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.14  E-value=0.013  Score=48.15  Aligned_cols=22  Identities=23%  Similarity=0.584  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||+||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999986

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.11  E-value=0.011  Score=48.10  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +|+++|+|||||||+-..|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999975

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.06  E-value=0.014  Score=52.25  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++-.++|+|.+|+|||||++.|.+
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhC
Confidence            3445689999999999999999997

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.026  Score=48.24  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+++.|.||+||||+.+.|..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            34689999999999999999986

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.87  E-value=0.034  Score=48.50  Aligned_cols=45  Identities=31%  Similarity=0.505  Sum_probs=32.1

Q ss_pred             cCHHHHHHHHHHHHhhhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          113 SSVQKLLELVELKLKEVI--SREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       113 ~gvk~Ll~~L~~~l~~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++.+++.+...+....  ...+...|++.|.||+|||++.++|.+
T Consensus        16 ~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          16 DPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhh
Confidence            456666666665554431  223445699999999999999999986

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.85  E-value=0.016  Score=47.49  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+++|.||+||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.018  Score=50.05  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      ++=.++++|.+|+|||||+|.|.+.
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3446899999999999999999973

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.77  E-value=0.014  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|..|+|||||++.|.+
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            33588999999999999999997

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.73  E-value=0.017  Score=50.18  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+=.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            344689999999999999999987

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.02  Score=47.06  Aligned_cols=23  Identities=17%  Similarity=0.540  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++|+|+|.||+||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999986

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.67  E-value=0.024  Score=53.19  Aligned_cols=85  Identities=13%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             HhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh------------h-hHHHH----HHHHhhCCC
Q 017187           42 RLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP------------N-ILNKW----VRHFDSCKQ  102 (375)
Q Consensus        42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~------------~-~~~~~----~~~~~~~g~  102 (375)
                      .+..+|++|++.|.+.  +..+..+.+.  ..++|+++|+||+|....            + .++.+    .+.+++.+.
T Consensus       132 ~~~~~d~~l~~~~~~~--~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~  209 (400)
T d1tq4a_         132 KFYEYDFFIIISATRF--KKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  209 (400)
T ss_dssp             TGGGCSEEEEEESSCC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcceEEEEecCCCC--CHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            4678999999998763  3333444443  357999999999996411            1 11222    222333332


Q ss_pred             ---cEEEEecCC--ccCHHHHHHHHHHHHhh
Q 017187          103 ---DYIAINAHS--RSSVQKLLELVELKLKE  128 (375)
Q Consensus       103 ---~vi~iSa~~--~~gvk~Ll~~L~~~l~~  128 (375)
                         +++.+|+..  ..++..|.+.+.+.+++
T Consensus       210 ~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         210 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence               567778754  45889999988877654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.64  E-value=0.017  Score=47.13  Aligned_cols=21  Identities=14%  Similarity=0.354  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+++|.|||||||+-+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999999975

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.018  Score=47.16  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++|+|+|.||+||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999975

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.54  E-value=0.023  Score=48.35  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=23.4

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+..|.+.|.||+||||+.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999999999999974

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.50  E-value=0.04  Score=47.52  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=27.4

Q ss_pred             CHHHHHHHHHHHHhhhhccCCce-EEEEEcCCCCChHHHHHHHHh
Q 017187          114 SVQKLLELVELKLKEVISREPTL-LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~-~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++.+.+.+...+..-....... .+++.|.||+|||++++++..
T Consensus        24 e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          24 EAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             HHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHH
Confidence            35666666654443311112222 345579999999999999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.11  Score=45.43  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..+++.|.||+|||+++++|..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34689999999999999999986

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.41  E-value=0.023  Score=49.61  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            34689999999999999999998

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.39  E-value=0.032  Score=50.80  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++...+...+..      +.+++|+|.+|+||||++|+|.+
T Consensus       153 ~~~~~~l~~~v~~------~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         153 EQAISAIKDGIAI------GKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             HHHHHHHHHHHHH------TCCEEEEESTTSSHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHh------CCCEEEEeeccccchHHHHHHhh
Confidence            4555556555543      33589999999999999999996

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.35  E-value=0.013  Score=51.89  Aligned_cols=25  Identities=44%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++-.++|+|.+|+|||||++.|.+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHh
Confidence            3445799999999999999999997

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.22  E-value=0.021  Score=47.33  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=23.5

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+++.|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            46678999999999999999999986

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.028  Score=46.45  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..|+|+|.||+||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.17  E-value=0.0024  Score=53.61  Aligned_cols=117  Identities=10%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187           37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS  114 (375)
Q Consensus        37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g  114 (375)
                      +.+.+.+...+..+.++|+..+.......+.++  ....+++++.++++  ++...+.-.... ..+. ..++++....+
T Consensus        75 ~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~  150 (213)
T d1bifa1          75 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV--DPEVIAANIVQV-KLGS-PDYVNRDSDEA  150 (213)
T ss_dssp             HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC--CHHHHHHHHHHH-TTTS-TTTTTSCHHHH
T ss_pred             HHHHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc--HHHHHHHhHHHH-hcCC-CcccccchHHH
Confidence            333444555666778899976644433344443  34567788888876  232222111111 1111 11234444455


Q ss_pred             HHHHHHHHHHHHhhhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          115 VQKLLELVELKLKEVI--SREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+.+.+....+...  .......+.++|.+|+|||+++|.+.+
T Consensus       151 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~I~~~n~g~~~lvn~i~g  195 (213)
T d1bifa1         151 TEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVAD  195 (213)
T ss_dssp             HHHHHHHHHHHHTTCCCCCTTTTTTSCEEEEETTTTEEEEECCCS
T ss_pred             HHHHHHhhhhccccccccCccccCCcCeEecCCCCceeeeccccc
Confidence            6666666665554321  112223356789999999999998775

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.13  E-value=0.025  Score=49.42  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +=.++++|.+|+|||||++.|.+
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            34689999999999999999997

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.044  Score=46.20  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..-++++||.||||||+++..|..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            445899999999999999999986

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.042  Score=48.73  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..-++++||.||||||+++..|..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            445899999999999999999986

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.03  E-value=0.02  Score=49.71  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQI  158 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~  158 (375)
                      .+=.++++|.+|+|||||++.|.+.
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3446899999999999999999983

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.018  Score=49.94  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|.+|+|||||+|.|.+
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            344689999999999999999997

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.98  E-value=0.025  Score=49.42  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++|.+|+|||||++.|.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            467899999999999999998

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.026  Score=49.28  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||++.|.+
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            34689999999999999999997

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.86  E-value=0.026  Score=49.31  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.++++|.+|+|||||+|.|.+
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            34689999999999999999998

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.036  Score=47.02  Aligned_cols=37  Identities=14%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          117 KLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       117 ~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.+.++..+..    ...-.+++.|.||+||||+.+.|..
T Consensus        22 ~~~~~L~~~~~~----~~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          22 ETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             HHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc----CCCCeEEEECCCCCCchhhHHHHHH
Confidence            344444444433    2233588999999999999998865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.60  E-value=0.032  Score=48.63  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++++|..|+|||||+|.|.+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344688999999999999999998

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=92.55  E-value=0.074  Score=46.32  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..-+++.|.||+|||++.++|.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34589999999999999999986

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.54  E-value=0.032  Score=49.20  Aligned_cols=24  Identities=21%  Similarity=0.428  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+=.++++|.+|+|||||+++|.+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            344689999999999999999997

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.041  Score=46.20  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.|+|.|.+|+||||+.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999999976

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.22  E-value=0.0047  Score=51.17  Aligned_cols=88  Identities=13%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             HHhhhcCeEEEEEeCCCCCCC------Cchh------Hhhc-----cCCCCEEEEEEcCCCCChhh--------------
Q 017187           41 HRLKISDLVIEVRDSRIPLSS------AHPG------LQPQ-----LSAKRRVIALNKKDLANPNI--------------   89 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~------~~~~------l~~~-----~~~kp~IiVlNK~DL~~~~~--------------   89 (375)
                      .....++.+++|+|+.+...-      .+..      +...     ..+.|+++|.||+|+.....              
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~  143 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG  143 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCS
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccC
Confidence            557899999999998654221      1111      1111     35789999999999742110              


Q ss_pred             ----HHH----HHHHHhhC------CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187           90 ----LNK----WVRHFDSC------KQDYIAINAHSRSSVQKLLELVELKLKE  128 (375)
Q Consensus        90 ----~~~----~~~~~~~~------g~~vi~iSa~~~~gvk~Ll~~L~~~l~~  128 (375)
                          ...    ....+.+.      .+.++.+||+++.+++++.+.+.+.+.+
T Consensus       144 ~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         144 PQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence                111    11122111      1235678999999999999998776643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.19  E-value=0.035  Score=48.80  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +=.++++|.+|+|||||+|.|.+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHC
Confidence            34689999999999999999998

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.08  E-value=0.11  Score=46.35  Aligned_cols=43  Identities=19%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhhh--hccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          115 VQKLLELVELKLKEV--ISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~--~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.+++.+..+++..  .....++-|+|.|.+|+|||||.+.|..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_           5 LDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCEEEEeECCCCCCHHHHHHHHHH
Confidence            344555565555443  2345678999999999999999988864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.06  E-value=0.068  Score=45.10  Aligned_cols=38  Identities=18%  Similarity=0.321  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++.+.+...+..    .....+++.|.||+||||++..|.+
T Consensus        20 ~~~~~~L~~~i~~----~~~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          20 NEVITTVRKFVDE----GKLPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             HHHHHHHHHHHHT----TCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----CCCCeEEEECCCCCChhHHHHHHHH
Confidence            3445555555433    2223488999999999999999975

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.03  E-value=0.025  Score=49.44  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +=.++++|.+|+|||||++.|.+
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            44689999999999999999998

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.97  E-value=0.091  Score=44.89  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+++.|.||+||||++.+|.+
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999987

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.80  E-value=0.049  Score=45.06  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...|+++|.||+||||+...|..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999986

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.79  E-value=0.05  Score=46.59  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -.++|.|.+|+|||||++.+..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3688999999999999998864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.78  E-value=0.059  Score=44.31  Aligned_cols=26  Identities=15%  Similarity=0.284  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHhhh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQIA  159 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~~g  159 (375)
                      .++-|+|.|.+|+||||+.+.|...|
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            36788999999999999999997643

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.65  E-value=0.084  Score=46.10  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +--+++.|.||+|||++++++..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            34589999999999999999987

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.36  E-value=0.043  Score=46.51  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++.|.||+||||++..+.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            488999999999999999875

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.33  E-value=0.12  Score=43.68  Aligned_cols=41  Identities=22%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+-.++..+...+..   ..+.-.+++.|.||+|||.+.++|..
T Consensus        35 ~~~~Fl~~l~~~l~~---~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          35 EFITFLGALKSFLKG---TPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CHHHHHHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcC---CCCceEEEEECCCCccHHHHHHHHHH
Confidence            455666666665533   23446899999999999999999986

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.22  E-value=0.076  Score=43.80  Aligned_cols=23  Identities=22%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-.++++|.||+||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44688999999999999999986

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.57  E-value=0.11  Score=42.14  Aligned_cols=86  Identities=15%  Similarity=0.054  Sum_probs=52.4

Q ss_pred             HHhhhcCeEEEEEeCCCCCCCCc------hh------Hhh----c-cCCCCEEEEEEcCCCCChh---------------
Q 017187           41 HRLKISDLVIEVRDSRIPLSSAH------PG------LQP----Q-LSAKRRVIALNKKDLANPN---------------   88 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s~~~------~~------l~~----~-~~~kp~IiVlNK~DL~~~~---------------   88 (375)
                      .....+|.+++|+|.....+...      ..      +..    . ....|+++|.||+|+....               
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~  140 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG  140 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCS
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcC
Confidence            55789999999999764332211      00      111    1 3467999999999963110               


Q ss_pred             --hHHHHH----HHHhh-------CCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187           89 --ILNKWV----RHFDS-------CKQDYIAINAHSRSSVQKLLELVELKL  126 (375)
Q Consensus        89 --~~~~~~----~~~~~-------~g~~vi~iSa~~~~gvk~Ll~~L~~~l  126 (375)
                        ......    ..+.+       ..+.++.+||+++.+++++++.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         141 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             CSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence              111111    12211       122456789999999999999887765

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=89.94  E-value=0.11  Score=44.38  Aligned_cols=26  Identities=35%  Similarity=0.649  Sum_probs=22.1

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+..+++||.+||||||.+=.|..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35677899999999999999887764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.17  Score=45.48  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=23.4

Q ss_pred             cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          132 REPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       132 ~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++.|+|.|.++|||||+.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            46689999999999999999999985

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.81  E-value=0.093  Score=43.45  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999985

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.69  E-value=0.15  Score=45.61  Aligned_cols=24  Identities=17%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++-.++++|.||||||.|.++|.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            445688999999999999999986

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=89.65  E-value=0.11  Score=44.10  Aligned_cols=25  Identities=28%  Similarity=0.638  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..+++||.+||||||.+-.|..
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4467899999999999999998864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.08  Score=45.22  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+|.|+.|+|||||+|.|+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            467899999999999999986

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.12  Score=43.57  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.-|+|-|..||||||+++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            345688889999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.10  E-value=0.12  Score=48.19  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..-++++||.||||||+++..|..
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHH
Confidence            444689999999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.74  E-value=0.28  Score=42.94  Aligned_cols=39  Identities=13%  Similarity=0.268  Sum_probs=27.5

Q ss_pred             CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++.+++.+..     ......|.|+|++|+|||||...+.+
T Consensus        28 ~~~~i~~~L~~~~-----~~~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          28 HVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             HHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-----CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4555555554321     23455788999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=88.63  E-value=0.13  Score=43.52  Aligned_cols=24  Identities=38%  Similarity=0.571  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+..++++|.+||||||.+=.|..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999988754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=88.05  E-value=0.14  Score=43.40  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=17.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..+..+++||.+||||+|.+=.|..
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999888764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.78  E-value=0.13  Score=43.86  Aligned_cols=21  Identities=14%  Similarity=0.262  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++.|.||+||||++.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999876

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=87.55  E-value=0.25  Score=45.36  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-.+++.|.||+|||++.++|.+
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            44789999999999999999986

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=87.52  E-value=0.17  Score=42.14  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-|+|-|..|+||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3478889999999999999985

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=87.49  E-value=0.18  Score=42.10  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIA  159 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g  159 (375)
                      +-|+|+|.+|+||||+.+.|...|
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            468899999999999999988644

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=87.15  E-value=0.04  Score=44.64  Aligned_cols=20  Identities=20%  Similarity=0.280  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+|+|..|+||||++.+|.-
T Consensus        27 tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999863

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.10  E-value=0.18  Score=42.02  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+.|+|-|.|||||||+-..|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45788889999999999999975

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.94  E-value=0.15  Score=44.57  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...+++.|.||+|||+|+++|.+
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHH
Confidence            34699999999999999999986

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.69  E-value=0.095  Score=44.44  Aligned_cols=47  Identities=19%  Similarity=0.104  Sum_probs=30.5

Q ss_pred             HHhhhcCeEEEEEeCCCCCC------CCch------hHhhc-----cCCCCEEEEEEcCCCCCh
Q 017187           41 HRLKISDLVIEVRDSRIPLS------SAHP------GLQPQ-----LSAKRRVIALNKKDLANP   87 (375)
Q Consensus        41 ~~l~~~DlVI~VvDar~p~s------~~~~------~l~~~-----~~~kp~IiVlNK~DL~~~   87 (375)
                      ...+.++.+++|+|......      ..+.      .+...     ..+.|+++++||+||...
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            45689999999999763211      1111      11111     356899999999998643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=86.57  E-value=0.35  Score=43.31  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ...++++|.|||||+.|..+|..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            34789999999999999999986

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=86.35  E-value=0.23  Score=41.94  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .-.++++|.+||||||.+-.|..
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34578899999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=85.87  E-value=0.26  Score=40.94  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQIA  159 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~~g  159 (375)
                      +-|+|.|.+|+||||+.+.|...|
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~G   26 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDLG   26 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC
Confidence            568899999999999999887643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.63  E-value=0.28  Score=37.80  Aligned_cols=25  Identities=8%  Similarity=0.118  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..++.|.+-|.+|+||||+-|+|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            5688999999999999999999975

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=85.55  E-value=0.23  Score=40.92  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.-|++.|.||+||||+.-.|..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            44589999999999999999886

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.50  E-value=0.24  Score=40.72  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +.-|++.|.||+||||+.-.|..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            44589999999999999999886

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=0.25  Score=40.78  Aligned_cols=21  Identities=19%  Similarity=0.465  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .|+|.|.||+||||+-..|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999999976

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.64  E-value=0.7  Score=40.30  Aligned_cols=42  Identities=12%  Similarity=0.069  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....+..++...+..  .......+.+.|.|+.|||+++++|..
T Consensus        85 ~~~~f~~~l~~~L~~--~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          85 DPQYAASVFLGWATK--KFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CHHHHHHHHHHHHTT--CSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC--CCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            344455555444321  224466889999999999999999986

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=84.43  E-value=0.22  Score=44.71  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 017187          137 LVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       137 ~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .++++|.||+|||+|..+|..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.39  E-value=0.29  Score=39.95  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+.-|++.|.||+||||+.-.|..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            345689999999999999988886

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.34  E-value=0.2  Score=43.92  Aligned_cols=20  Identities=35%  Similarity=0.547  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      .+++|..|+||||++.||.-
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999853

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.94  E-value=0.35  Score=40.73  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +..|+|=|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34688999999999999999986

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=0.23  Score=41.77  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -.|+|-|..||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999986

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=83.37  E-value=0.6  Score=43.16  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHh
Q 017187          133 EPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       133 ~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ....-++|.|.+|+||||++.+++.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhh
Confidence            3556789999999999999999986

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.03  E-value=0.72  Score=39.03  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187          116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++.+.+...+..   ...+-.+++.|.||+||+|+...+..
T Consensus        18 ~~~~~~L~~~i~~---~~~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          18 EHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             HHHHHHHHHHHHT---TCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc---CCCCeeEEEECCCCCcHHHHHHHHHH
Confidence            4555555555433   12233478999999999999998865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.88  E-value=0.34  Score=40.82  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 017187          138 VMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       138 v~vvG~pnvGKSsliN~L~~  157 (375)
                      +++.|.||+|||.|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999986

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.63  E-value=0.39  Score=38.65  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      +-.+.|.|.||+|||+|...+..
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            44688999999999999988774

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.50  E-value=0.42  Score=40.03  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHh
Q 017187          134 PTLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       134 ~~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.-|+|-|.-||||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            456789999999999999999985

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.78  E-value=0.79  Score=40.88  Aligned_cols=43  Identities=12%  Similarity=0.225  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhhhccCCc-eEEEEEcCCCCChHHHHHHHHh
Q 017187          115 VQKLLELVELKLKEVISREPT-LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       115 vk~Ll~~L~~~l~~~~~~~~~-~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ++.+.+.+...........++ ..++++|.||||||.+.+.|..
T Consensus        32 i~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          32 IRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             HHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHH
Confidence            444444444432222222333 3678899999999999999876

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=80.94  E-value=1.1  Score=40.12  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 017187          136 LLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       136 ~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      -.++++|.|||||+.|..+|.+
T Consensus       124 g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            3456689999999999999986

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.42  E-value=0.33  Score=43.07  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=17.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHh
Q 017187          135 TLLVMVVGVPNVGKSALINSIHQ  157 (375)
Q Consensus       135 ~~~v~vvG~pnvGKSsliN~L~~  157 (375)
                      ..-|+|.|-||+||||+.++|..
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            34699999999999999999865