Citrus Sinensis ID: 017194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Secondary Structure (PSIPRED)
cccccccccEEccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccEEEEEEEccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEcccccccccccEEEEEEccccEEEEcccccccccccEEEEEEccccccccEEEEEEccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEccccccEEEEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHcEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEcccccccccccccEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEccccccEEEEEccccEEEEEccccccEEEEEEEcccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEEcccEEEEEEcc
Coil and Loop (DISEMBL)
mtdaeakprrlrghkatatcciasrdrpgfvassgedgcicwfdlrskDVQLvtdvgngpvtslcfksgnediiyvssgkevksfdvhmpaswrplesynynkeeinqivcnpkssflacaddggdvkiiDIRQHCLYkslraghssicssvqfipwkpwevisggldskLVMWdfskgrpnkivnfglpenngnagqcynpafvhaiaipdadmldktnKICVVAKGDGVVDVINIESelnisrsksttkplkgsqstskvnIRDAEMEILdqsggkrlhldysvgghtAAASCVAFSMFGERGKylisggndklvkvwdcsrfqgvqtsinnDLLIKNINLNKKVNWLcttptesenlvvcdtskvVKVYSIS
Flexible Loop (DISEMBL)
mtdaeakprrlrghkatatcciasrdrpgfvassGEDGCICWFDLRSKDVQLVTDVGNgpvtslcfksgnEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIeselnisrsksttkplkgsqstskvnirdAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVqtsinndllikniNLNKKVNWLCTtptesenlvvcdtskvvkvysis
Low Complexity Region (SEG)
MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSinndllikninlnkkvnWLCTTPTESENLVVCDTSKVVKVYSIS
Disordered region (IsUnstruct)
****************TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES**************************************KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY***
Disordered Region (DISOPRED)
*TDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Disordered Region (DISEMBL)
**************KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR****************VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Disordered Region (DISPRO)
*****AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
Q9DB94	358	WD repeat-containing prot	yes	no	0.826	0.865	0.255	8e-25
Q32KQ2	358	WD repeat-containing prot	yes	no	0.813	0.851	0.259	2e-23
Q7Z5U6	358	WD repeat-containing prot	yes	no	0.826	0.865	0.256	4e-23
Q54BI5	368	WD repeat-containing prot	yes	no	0.845	0.861	0.255	8e-20
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.504	0.123	0.28	1e-06
P0CS35	830	Ribosome biogenesis prote	N/A	no	0.381	0.172	0.25	1e-05
P0CS34	830	Ribosome biogenesis prote	yes	no	0.381	0.172	0.25	1e-05
Q10281	314	Guanine nucleotide-bindin	yes	no	0.6	0.716	0.221	2e-05
Q6FJZ9	427	Pre-mRNA-splicing factor	yes	no	0.754	0.662	0.198	4e-05
Q3Y8L7	446	Outer row dynein assembly	N/A	no	0.770	0.647	0.222	9e-05

>sp|Q9DB94|WDR53_MOUSE WD repeat-containing protein 53 OS=Mus musculus GN=Wdr53 PE=2 SV=1

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 163/400 (40%), Gaps = 90/400 (22%)

Query: 13  GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED 72
           GH ++  C  A++D  G VAS GE G +  +      +  +   G   VTS+ F +    
Sbjct: 8   GHSSSILCLNANKD--GLVASGGEGGDLVAWGEDGTPLGHMQLEGADDVTSVLFSASCPT 65

Query: 73  IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132
            +Y S G+ +   DV        L+ ++ N+EEIN +  N   S LA ADD G +KI+D+
Sbjct: 66  KLYASHGETISVLDVRSLKG--SLDHFHVNEEEINCLSLNETESLLASADDSGAIKILDL 123

Query: 133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 192
            +  + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N    E 
Sbjct: 124 EKKKVTRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDET 182

Query: 193 N-----GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247
                    G+  NPA  H++++           I      DG V +  +          
Sbjct: 183 EETEGPQTPGRLLNPALAHSVSVASC------GNIFSCGAEDGKVRIFRVM--------- 227

Query: 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 307
                                        G +   +    GHT   S V F         
Sbjct: 228 -----------------------------GVKCERELGFKGHTLGVSQVCFL---PESSL 255

Query: 308 LISGGNDKLVKVWDC-------------------------------SRFQGVQTSINNDL 336
           L++GGND  +++WD                                SR  G +   +  +
Sbjct: 256 LLTGGNDGRIRLWDVSGKMEKLQKSPARHIHRKKAKRAACPTQGGNSRAPGAEDEGHAKI 315

Query: 337 LIK-NINLNKKVNWLCTTPTE-SENLVVCDTSKVVKVYSI 374
           L K +I   +KVNWL +T  + +++++V D +  V VY +
Sbjct: 316 LPKLDIEHGEKVNWLLSTKIKGNKSILVADQTSCVSVYPL 355

Mus musculus (taxid: 10090)

>sp|Q32KQ2|WDR53_BOVIN WD repeat-containing protein 53 OS=Bos taurus GN=WDR53 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 166/405 (40%), Gaps = 100/405 (24%)

Query: 13  GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDV---GNGPVTSLCFKS 68
           GH +   C  AS++  G VAS  E G  + W     +D  L+      G   VT++ F  
Sbjct: 8   GHSSPILCLNASQE--GLVASGAEGGDLVVW----GEDGTLLGHTCFQGAEDVTNVLFSP 61

Query: 69  GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
                +Y S G+ +   DV   +   PL+ ++ N+EEIN +  N   + LA ADD G +K
Sbjct: 62  SCPTKLYASHGETISILDVR--SLKEPLDDFHVNEEEINCLSLNETENLLASADDSGTIK 119

Query: 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 188
           I+D+    + +SL+  HS+ICSSV F P +P  ++S GLD ++++W+  K RP  I N  
Sbjct: 120 ILDLENKKISRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWNLRKARPLWITNLQ 178

Query: 189 LPENN-----GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243
             E        + GQ  NPA  H++++           +      DG V +  +      
Sbjct: 179 EDETEEMESPQSPGQLLNPALAHSVSVASC------GNVFSCGAEDGKVRIFRVM----- 227

Query: 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 303
                                            G +   +    GH+   S V F     
Sbjct: 228 ---------------------------------GVKCEQELGFKGHSLGVSQVCFL---- 250

Query: 304 RGKY-LISGGNDKLVKVWDCS--------------------------RFQGVQTSINND- 335
           R  Y L++GGND  +K+WD S                          +  G   S+  + 
Sbjct: 251 RESYLLLTGGNDGKIKLWDVSSEIEKKHKSPTKHTHRKKTKRAAYTKQGGGTHASVTGED 310

Query: 336 ----LLIK-NINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSI 374
               +L K +I   +KVNWL +T  +   N++V D +  + VY +
Sbjct: 311 EHGKILPKLSIEHGEKVNWLLSTKIKGYRNILVADQTSCISVYPL 355

Bos taurus (taxid: 9913)

>sp|Q7Z5U6|WDR53_HUMAN WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 160/402 (39%), Gaps = 92/402 (22%)

Query: 13  GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED 72
           GH +   C  AS++  G +AS  E G +  +      +      G   VTS+ F      
Sbjct: 8   GHSSPVLCLNASKE--GLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPT 65

Query: 73  IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132
            +Y S G+ +   DV        L+ ++ N+EEIN +  N   + LA ADD G +KI+D+
Sbjct: 66  KLYASHGETISVLDVRSLKD--SLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDL 123

Query: 133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 192
               + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N    E 
Sbjct: 124 ENKKVIRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQEDET 182

Query: 193 N-----GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247
                  + GQ  NPA  H+I++           I      DG V +  +          
Sbjct: 183 EEMEGPQSPGQLLNPALAHSISVASC------GNIFSCGAEDGKVRIFRVM--------- 227

Query: 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 307
                                        G +   +    GHT+  S V F         
Sbjct: 228 -----------------------------GVKCEQELGFKGHTSGVSQVCFL---PESYL 255

Query: 308 LISGGNDKLVKVWD-------------------------CSRFQGVQTSIN--------N 334
           L++GGND  + +WD                         C++ QG  T+ +        N
Sbjct: 256 LLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTK-QGGNTNASVTDEEEHGN 314

Query: 335 DLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS 375
            L   NI   +KVNWL  T  +  +N++V D +  + VY ++
Sbjct: 315 ILPKLNIEHGEKVNWLLGTKIKGHQNILVADQTSCISVYPLN 356

Homo sapiens (taxid: 9606)

>sp|Q54BI5|WDR53_DICDI WD repeat-containing protein 53 homolog OS=Dictyostelium discoideum GN=wdr53 PE=3 SV=1

 Score = 98.6 bits (244), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 170/392 (43%), Gaps = 75/392 (19%)

Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNG-PVTSLCFK 67
           +L GHK T   CI+S ++   +AS  +D  +  +DL + K +Q + +   G PV ++CF 
Sbjct: 24  KLIGHKDTV-LCISSHNKKEIIASGSDDCTVRIWDLNTNKSIQSIVEGFQGNPVNNVCF- 81

Query: 68  SGNEDIIYVSSGKEVKSFDVHMP-ASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGG 125
              +  +Y S    + SFD+  P    +   + Y +N EEINQ+  + K  +LA  DD G
Sbjct: 82  -DQDFTLYCSYDNIIVSFDLRQPNVILKEFNTQYKFNTEEINQLSFDSKYQYLAACDDSG 140

Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 185
             KIID+ ++ L +SL   H++I +   F P    E+I+  +D  ++ WDF K +     
Sbjct: 141 QTKIIDVTKNKLVESLNKKHTNIATGCVFRPNSKNELITSSMDFSIIHWDFLKAKVLHRD 200

Query: 186 NF---GLPENNGNA----------GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 232
            F    LP+N   +           +  NP FV ++   +       +K   ++ GDG +
Sbjct: 201 TFKEGSLPQNISKSQQQQQETTEPNRMLNPPFVTSVDCSN------NSKYVAISMGDGTI 254

Query: 233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 292
            VIN                +   +   K+N                         H ++
Sbjct: 255 -VIN---------------EISSFKQYLKIN-----------------------SIHKSS 275

Query: 293 ASCVAFSMFGERG-KYLISGGN-DKLVKVWDCSRFQGVQTSI--------NNDLLIKNIN 342
              V +  + E   + LIS GN DK + +WD S     + S         NN+ +   + 
Sbjct: 276 IQQVHYPKYLENNYQRLISFGNYDKKIVIWDVSEDMNTKVSSSLLSNDEKNNERIKTWLE 335

Query: 343 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374
            ++K+N L T+  ++  + V D S  +K+ SI
Sbjct: 336 HSEKINCLTTSNLKNNAIFVADLSNDLKLLSI 367

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 36/225 (16%)

Query: 106  INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG 165
            +N +  +     LA   D   V++ DI      K+ + GH+S   SV F P     + SG
Sbjct: 909  VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFK-GHTSRVRSVVFSP-NSLMLASG 966

Query: 166  GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 225
              D  + +WD S G    I         G+ G  Y+ AF       D  ML         
Sbjct: 967  SSDQTVRLWDISSGECLYIFQ-------GHTGWVYSVAFN-----LDGSML-------AT 1007

Query: 226  AKGDGVVDVINIES-------ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 278
              GD  V + +I S       + + S  +S      G+   S  +  D  + + D S G 
Sbjct: 1008 GSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSD--DQTVRLWDISSGN 1065

Query: 279  RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 323
             L   Y++ GHT   SCV   +F   G  L SGG+D++V++WD S
Sbjct: 1066 CL---YTLQGHT---SCVRSVVFSPDGAMLASGGDDQIVRLWDIS 1104

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P0CS35|ERB1_CRYNB Ribosome biogenesis protein ERB1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ERB1 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 17/160 (10%)

Query: 27  RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86
           +P F A++     I  +DL ++ +      G   ++S+   SG +++I  S  K++  FD
Sbjct: 674 KPHFFAATQR--YIRLYDLAAQKLIRTLQSGVKWISSMDVHSGGDNLIIGSYDKKLAWFD 731

Query: 87  VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII------DIRQHCLYKS 140
           + + A  +P ++  Y+   +  +  +P     A A D G V I       D+ Q+ L   
Sbjct: 732 MDLSA--KPYKTLRYHNRALRSVAYHPTLPLFASASDDGTVHIFHCTVYTDLMQNPLIVP 789

Query: 141 LR--AGHSSI----CSSVQFIPWKPWEVISGGLDSKLVMW 174
           L+   GH  I       ++++P KPW ++S G D ++ +W
Sbjct: 790 LKILRGHKVIDGIGVLDLRWVPGKPW-LVSSGADGEVRLW 828

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|P0CS34|ERB1_CRYNJ Ribosome biogenesis protein ERB1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ERB1 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 17/160 (10%)

Query: 27  RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86
           +P F A++     I  +DL ++ +      G   ++S+   SG +++I  S  K++  FD
Sbjct: 674 KPHFFAATQR--YIRLYDLAAQKLIRTLQSGVKWISSMDVHSGGDNLIIGSYDKKLAWFD 731

Query: 87  VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII------DIRQHCLYKS 140
           + + A  +P ++  Y+   +  +  +P     A A D G V I       D+ Q+ L   
Sbjct: 732 MDLSA--KPYKTLRYHNRALRSVAYHPTLPLFASASDDGTVHIFHCTVYTDLMQNPLIVP 789

Query: 141 LR--AGHSSI----CSSVQFIPWKPWEVISGGLDSKLVMW 174
           L+   GH  I       ++++P KPW ++S G D ++ +W
Sbjct: 790 LKILRGHKVIDGIGVLDLRWVPGKPW-LVSSGADGEVRLW 828

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|Q10281|GBLP_SCHPO Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rkp1 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 19/244 (7%)

Query: 134 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN- 192
           +  + ++   GHS   +S+   P  P  ++SG  D  +++W+  +      VN+G+ +  
Sbjct: 3   EQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDD----VNYGVAQRR 58

Query: 193 -NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTT 250
             G++    + A         +   DKT ++  + KG+     +   S+ L++S S    
Sbjct: 59  LTGHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNR 118

Query: 251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 310
           + + GS        RD  ++I +  G  +  +  + GGH+   SCV FS   +   + +S
Sbjct: 119 QVVSGS--------RDKTIKIWNIIGNCKYTI--TDGGHSDWVSCVRFSPNPDNLTF-VS 167

Query: 311 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 370
            G DK VKVWD   F    +   +   +  + ++   + LC +      L++ D ++   
Sbjct: 168 AGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGS-LCASGGRDGTLMLWDLNESTH 226

Query: 371 VYSI 374
           +YS+
Sbjct: 227 LYSL 230

May be a receptor for protein kinase C in the regulation of actin cytoskeleton organization during cell wall synthesis and morphogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6FJZ9|PRP46_CANGA Pre-mRNA-splicing factor PRP46 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PRP46 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 125/323 (38%), Gaps = 40/323 (12%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
           R + GH     C    +    + A+   D  I  ++L S  +++     +  V  L   +
Sbjct: 109 RVIHGHHGWVRCIAMDKVDNEWFATGSNDKTIKIWNLASGKLKVTLKAHDMTVRDLAISN 168

Query: 69  GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
            +  +  VS  K VK +D+    +   + +Y+ +   ++ +  +P    +  A     VK
Sbjct: 169 RHPYMFSVSEDKTVKCWDLEKNTA---IRNYHGHLSGVHTVDIHPTVDVVVTAGRDSVVK 225

Query: 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 188
           + DIR      +L  GH    + V+ +P  P +VIS  +D+ + +WD   G+  K++   
Sbjct: 226 VWDIRTRLPVMTL-PGHKGPITKVRCLPVDP-QVISSSVDASIRLWDLVAGKSMKVLTHH 283

Query: 189 L---------PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239
                     P     A  C N   + +  +P  ++L  TN    V++   V++ ++I  
Sbjct: 284 QRTVRDISVHPSEFSFASACTND--IRSWLLPKGELL--TN---FVSQDLDVINTVSINQ 336

Query: 240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL--DYSVGGHTAAASCVA 297
           +  +           GS + S        +   D   G +          G   +   + 
Sbjct: 337 DDVL---------FAGSDNGS--------LTFFDYKSGHKYQTFKTKEAPGSPESERGIL 379

Query: 298 FSMFGERGKYLISGGNDKLVKVW 320
            S F   G  L++G  D+ +K+W
Sbjct: 380 SSTFDGTGLRLLTGETDRTIKIW 402

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q3Y8L7|WDR69_CHLRE Outer row dynein assembly protein 16 OS=Chlamydomonas reinhardtii GN=ODA16 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 133/324 (41%), Gaps = 35/324 (10%)

Query: 11  LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN 70
           LR H    T C  ++    F+  S +  C  W     ++V  +    N  V ++ F +  
Sbjct: 90  LRAHILPLTNCAFNKSGDRFITGSYDRTCKVWNTFTGEEVFTLEGHKN-VVYAIAFNNPY 148

Query: 71  ED-IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC---NPKSSFLACADDGGD 126
            D I+  S  K  K +D +    +  L+ +        +IVC   NP+S+ +A       
Sbjct: 149 GDKIVTGSFDKTCKLWDAYTGQLYYTLKGHQ------TEIVCLSFNPQSTIIATGSMDNT 202

Query: 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186
            K+ D+       +L AGH +   S+ F       +++G  D    +WD   G+   +++
Sbjct: 203 AKLWDVETGQERATL-AGHRAEIVSLGFNTGGDL-IVTGSFDHDSRLWDVRTGQCVHVLS 260

Query: 187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-VDVINIESELNISR 245
                  G+ G+  +  F +A  +  +  +D T+++  V  G  + V   + +  L+++ 
Sbjct: 261 -------GHRGEVSSTQFNYAGTLVVSGSIDCTSRLWDVRSGRCLSVKQGHTDEVLDVAF 313

Query: 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 305
             + TK +  S         D    +     G   H   ++ GH    S VAF+  G R 
Sbjct: 314 DAAGTKMVSASA--------DGSARLYHTLTGVCQH---TLVGHEGEISKVAFNPQGTR- 361

Query: 306 KYLISGGNDKLVKVWDCSRFQGVQ 329
             LI+  +DK  ++WDC   + +Q
Sbjct: 362 --LITASSDKTCRLWDCDTGECLQ 383

Functions as a cargo-specific adapter between intraflagellar transport (IFT) particles and outer row dynein. Required for efficient dynein-mediated transport into the flagellar compartment.

Chlamydomonas reinhardtii (taxid: 3055)

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2171953	360	AT5G45760 "AT5G45760" [Arabido	0.717	0.747	0.684	1.1e-101
MGI|MGI:1916230	358	Wdr53 "WD repeat domain 53" [M	0.512	0.536	0.338	6.8e-30
UNIPROTKB|F1NUJ8	320	POC1A "Uncharacterized protein	0.426	0.5	0.252	3e-10
RGD|1565004	324	Poc1a "POC1 centriolar protein	0.149	0.172	0.428	1.4e-07
MGI|MGI:1917485	405	Poc1a "POC1 centriolar protein	0.130	0.120	0.436	1.5e-07
ZFIN|ZDB-GENE-040426-1993	416	poc1a "POC1 centriolar protein	0.157	0.141	0.378	3.4e-07
UNIPROTKB|F1SIZ2	367	POC1A "Uncharacterized protein	0.130	0.133	0.436	3.6e-07
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.333	0.394	0.229	4.1e-07
UNIPROTKB|E9PFC6	369	POC1A "POC1 centriolar protein	0.245	0.249	0.307	4.4e-07
UNIPROTKB|Q8NBT0	407	POC1A "POC1 centriolar protein	0.245	0.226	0.307	5.8e-07

TAIR|locus:2171953 AT5G45760 "AT5G45760" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 191/279 (68%), Positives = 227/279 (81%)

Query:     1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP 60
             M  A  +PR+LRGHK+TATCCIASRDRPG V +SGEDGCICWFDLR KDVQ + DVG  P
Sbjct:     1 MATAMEEPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKDVQFIIDVGTEP 60

Query:    61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHM--PASWRPLESYNYNKEEINQIVCNPKSSFL 118
             V+SLCFK+GNE+I+Y S G E+KSFDVH     SW+PLESYNYNK+E+NQ+VCN +SSFL
Sbjct:    61 VSSLCFKTGNENILYASCGNEIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFL 120

Query:   119 ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
             A ADD GDVKIID+ Q CLYK+LRAGH+SICSSVQFIPW+PWEVI+GGLDSKLV+WDFSK
Sbjct:   121 ASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKLVLWDFSK 180

Query:   179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238
             GR  KI++FG   NN N+GQC NPAFVH+IAIP+ DM+DK +KIC VA+GDG+V++INIE
Sbjct:   181 GRSQKIIDFGSDTNN-NSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIE 239

Query:   239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 277
             SEL  SR K T+   KGS S+S  N+   +   LD S G
Sbjct:   240 SEL--SR-KGTSS--KGSSSSSSNNV--VKRVCLDYSVG 271

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1916230 Wdr53 "WD repeat domain 53" [Mus musculus (taxid:10090)]

 Score = 278 (102.9 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 69/204 (33%), Positives = 108/204 (52%)

Query:    13 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE 71
             GH ++  C  A++D  G VAS GE G  + W +  +    +  + G   VTS+ F +   
Sbjct:     8 GHSSSILCLNANKD--GLVASGGEGGDLVAWGEDGTPLGHMQLE-GADDVTSVLFSASCP 64

Query:    72 DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131
               +Y S G+ +   DV        L+ ++ N+EEIN +  N   S LA ADD G +KI+D
Sbjct:    65 TKLYASHGETISVLDVRSLKG--SLDHFHVNEEEINCLSLNETESLLASADDSGAIKILD 122

Query:   132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG--- 188
             + +  + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N     
Sbjct:   123 LEKKKVTRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDE 181

Query:   189 LPENNG--NAGQCYNPAFVHAIAI 210
               E  G    G+  NPA  H++++
Sbjct:   182 TEETEGPQTPGRLLNPALAHSVSV 205

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NUJ8 POC1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
 Identities = 44/174 (25%), Positives = 69/174 (39%)

Query:    11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN 70
             L GHK  A  C+        VAS   D  +C +    K    V       V S+ F S  
Sbjct:    58 LVGHK-DAVMCVQFSPSGHLVASGSRDKTVCLWVPSVKGESTVFKAHTATVRSVHFSSDG 116

Query:    71 EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC---NPKSSFLACADDGGDV 127
             + ++  S  K +K + VH     + L S +   + IN + C   +P    +A A D   V
Sbjct:   117 QSLVTASDDKTIKVWTVHRQ---KFLFSLS---QHINWVRCARFSPDGRLIASASDDKTV 170

Query:   128 KIID-IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
             K+ D   + C++      H    + V+F P     + + G D  + +WD    R
Sbjct:   171 KLWDKTSRECIHSFCE--HGGFANHVEFHPSGTC-IAAAGTDKTVKVWDVRMNR 221

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

RGD|1565004 Poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Rattus norvegicus (taxid:10116)]

 Score = 99 (39.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query:   266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
             D+ ++ILD   G+ L   Y++ GH   A+ VAFS  GE   Y  SGG+D+ V VW  S F
Sbjct:   250 DSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVWK-SNF 302

Query:   326 QGV 328
               V
Sbjct:   303 DTV 305

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005932 "microtubule basal body" evidence=ISO

MGI|MGI:1917485 Poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query:   266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
             D+ ++ILD   G+ L   Y++ GH   A+ VAFS  GE   Y  SGG+D+ V VW
Sbjct:   250 DSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 298

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0030030 "cell projection organization" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

ZFIN|ZDB-GENE-040426-1993 poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 95 (38.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query:   266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
             D+ ++ILD   G+ L   Y++ GH  +ASCV+FS  G++     S G+D+ V VW  + F
Sbjct:   249 DSTLKILDLLEGRLL---YTLHGHQGSASCVSFSRSGDQ---FASAGSDQQVMVWR-TNF 301

Query:   326 QGVQTS 331
               V  S
Sbjct:   302 DSVDYS 307

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0030030 "cell projection organization" evidence=IEA

UNIPROTKB|F1SIZ2 POC1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 97 (39.2 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query:   266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
             D+ ++ILD   G+ L   Y++ GH   A+ VAFS  GE   Y  SGG+D+ V VW
Sbjct:   281 DSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 329

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 30/131 (22%), Positives = 65/131 (49%)

Query:    58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PASWRPLESYNYNKEEINQIVCNPK 114
             N  V+S+ F S    +   S+ K ++++ ++    P +  P++ +  ++  I+ +  +  
Sbjct:    24 NRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIA-EPVQEFTGHENGISDVAFSSD 82

Query:   115 SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW 174
             + F+  A D   +K+ D+    L K+L  GH++    V F P     ++SG  D  + +W
Sbjct:    83 ARFIVSASDDKTLKLWDVETGSLIKTL-IGHTNYAFCVNFNPQSNM-IVSGSFDETVRIW 140

Query:   175 DFSKGRPNKIV 185
             D + G+  K++
Sbjct:   141 DVTTGKCLKVL 151

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

UNIPROTKB|E9PFC6 POC1A "POC1 centriolar protein homolog A" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query:   223 CVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-----RDAEMEILDQSG 276
             C+ A G D  V V ++ +   +   +  +  + G       N       D+ ++ILD   
Sbjct:   163 CIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLME 222

Query:   277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
             G+ L   Y++ GH   A+ VAFS  GE   Y  SGG+D+ V VW
Sbjct:   223 GRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 260

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q8NBT0 POC1A "POC1 centriolar protein homolog A" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query:   223 CVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-----RDAEMEILDQSG 276
             C+ A G D  V V ++ +   +   +  +  + G       N       D+ ++ILD   
Sbjct:   201 CIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLME 260

Query:   277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
             G+ L   Y++ GH   A+ VAFS  GE   Y  SGG+D+ V VW
Sbjct:   261 GRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 298

GO:0030030 "cell projection organization" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0005814 "centriole" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	375
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.0 bits (190), Expect = 6e-16
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 10/185 (5%)

Query: 2   TDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV 61
            +     R L GH +  +    S D    ++SS  D  I  +D+ +             V
Sbjct: 80  LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138

Query: 62  TSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLA 119
            S+ F S +   +  SS    +K +D+    + + + +   +  E+N +  +P     L+
Sbjct: 139 NSVAF-SPDGTFVASSSQDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194

Query: 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG 179
            + D G +K+ D+       +LR GH +  +SV F P     + SG  D  + +WD   G
Sbjct: 195 SSSD-GTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLRTG 251

Query: 180 RPNKI 184
              + 
Sbjct: 252 ECVQT 256

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 68/315 (21%), Positives = 120/315 (38%), Gaps = 72/315 (22%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFK 67
           R L+GH        AS D   ++AS   D  I  +DL + +  + T  G    V+S+ F 
Sbjct: 45  RTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAF- 101

Query: 68  SGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126
           S +  I+  SS  K +K +DV    + + L +   + + +N +  +P  +F+A +   G 
Sbjct: 102 SPDGRILSSSSRDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Query: 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186
           +K+ D+R      +L  GH+   +SV F P    +++S   D  + +WD S G+      
Sbjct: 159 IKLWDLRTGKCVATLT-GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKC----- 211

Query: 187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 246
             L    G+     + AF                 +      DG + V ++ +       
Sbjct: 212 --LGTLRGHENGVNSVAF------------SPDGYLLASGSEDGTIRVWDLRTG------ 251

Query: 247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
                                                 ++ GHT + + +A+S     GK
Sbjct: 252 ----------------------------------ECVQTLSGHTNSVTSLAWS---PDGK 274

Query: 307 YLISGGNDKLVKVWD 321
            L SG  D  +++WD
Sbjct: 275 RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 66.3 bits (160), Expect = 7e-12
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 3/181 (1%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
             L GH    +    S D    +AS   DG I  +DL +  +   T  G+       F  
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251

Query: 69  GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
               +   SS   ++ +D+   +S   L + + +   +  +  +P    LA     G V+
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309

Query: 129 IIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 187
           + D+    L  SL   GH    SS+ F P     V  G  D  + +WD   G+P K +  
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369

Query: 188 G 188
            
Sbjct: 370 H 370

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.9 bits (159), Expect = 8e-12
 Identities = 74/343 (21%), Positives = 123/343 (35%), Gaps = 32/343 (9%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF-K 67
           R L GH  + T    S D     + S  DG I  +DLR+            PV+SL F  
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 68  SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127
            G   I   SS   ++ +D+    + + L S      +      +P  S LA     G +
Sbjct: 209 DGGLLIASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI 265

Query: 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 187
           ++ D+R         +GHSS   SV F P     + SG  D  + +WD   G+    +  
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--R 245
                             H   +         + +      DG + + ++ +   +    
Sbjct: 325 ----------------KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 246 SKSTTKPLKGSQSTSKVNIR--DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 303
             S    +  S     V+    D  + + D S G    L  ++ GHT+  + + FS    
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS---LLRNLDGHTSRVTSLDFS---P 422

Query: 304 RGKYLISGGNDKLVKVWDCSRF-QGVQTSINNDLLIKNINLNK 345
            GK L SG +D  +++WD     + V  S +  +L    +   
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLS 465

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 58/292 (19%), Positives = 103/292 (35%), Gaps = 51/292 (17%)

Query: 58  NGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116
            G VT + F S +  ++   SG   +K +D+      R L+    +   +  +  +   +
Sbjct: 9   TGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDVAASADGT 64

Query: 117 FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF 176
           +LA       +++ D+      ++L  GH+S  SSV F P     + S   D  + +WD 
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRI-LSSSSRDKTIKVWDV 122

Query: 177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 236
             G+    +               +  +V+++A                +  DG + + +
Sbjct: 123 ETGKCLTTLRG-------------HTDWVNSVAF------SPDGTFVASSSQDGTIKLWD 163

Query: 237 IESELNISRSKSTTKPLKGSQST-SKVNIRDAEMEILDQSGGKRLHL-DYSVG------- 287
           +       R+      L G     + V       ++L  S    + L D S G       
Sbjct: 164 L-------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD------CSRFQGVQTSIN 333
           GH    + VAFS     G  L SG  D  ++VWD           G   S+ 
Sbjct: 217 GHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 60/324 (18%), Positives = 122/324 (37%), Gaps = 26/324 (8%)

Query: 58  NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP----ASWRPLESYNYNKEEINQIVCNP 113
              +TS+ F    E ++  SS   +K +D+        S   L   + +K  ++    + 
Sbjct: 65  EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDG 122

Query: 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173
            S  LA +   G VK+ D+           GHS   +S+ F P          LD  + +
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 233
           WD   G+P   +       +  +   ++P     IA   +   D T ++  ++ G  +  
Sbjct: 183 WDLRTGKPLSTLA---GHTDPVSSLAFSPDGGLLIASGSS---DGTIRLWDLSTGKLLRS 236

Query: 234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 293
            ++  S+  +S        L    S   + + D               L  ++ GH+++ 
Sbjct: 237 TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS---------SSLLRTLSGHSSSV 287

Query: 294 SCVAFSMFGERGKYLISGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWLC 351
             VAFS     GK L SG +D  V++WD    +     T   ++  + +++ +   + L 
Sbjct: 288 LSVAFS---PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 352 TTPTESENLVVCDTSKVVKVYSIS 375
           +  ++   + + D      + ++ 
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLE 368

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321
            ++ GHT   + VAFS     G  L SG +D  V+VWD
Sbjct: 5   RTLKGHTGPVTSVAFS---PDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321
           GHT   + VAFS     GKYL SG +D  +K+WD
Sbjct: 10  GHTGPVTSVAFS---PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 347
           GHT   +CVAFS     GK L +G  D  +KVWD             +LL         V
Sbjct: 7   GHTGGVTCVAFS---PDGKLLATGSGDGTIKVWDLE---------TGELLRTLKGHTGPV 54

Query: 348 NWLCTTPTESENLVVCDTSKVVKVYSIS 375
                   +   L    + K ++++ + 
Sbjct: 55  RD-VAASADGTYLASGSSDKTIRLWDLE 81

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
PTZ00421	493	coronin; Provisional	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0639	705	consensus Transducin-like enhancer of split protei	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG2055	514	consensus WD40 repeat protein [General function pr	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG4283	397	consensus Transcription-coupled repair protein CSA	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0646	476	consensus WD40 repeat protein [General function pr	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG1539	910	consensus WD repeat protein [General function pred	99.98
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG1274	933	consensus WD40 repeat protein [General function pr	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.97
KOG4328	498	consensus WD40 protein [Function unknown]	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG1188	376	consensus WD40 repeat protein [General function pr	99.95
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.94
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.93
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.93
KOG1310	758	consensus WD40 repeat protein [General function pr	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0649	325	consensus WD40 repeat protein [General function pr	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1334	559	consensus WD40 repeat protein [General function pr	99.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG4227	609	consensus WD40 repeat protein [General function pr	99.91
PRK11028	330	6-phosphogluconolactonase; Provisional	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.91
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.88
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG4227	609	consensus WD40 repeat protein [General function pr	99.86
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.85
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.83
KOG2139	445	consensus WD40 repeat protein [General function pr	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG2139	445	consensus WD40 repeat protein [General function pr	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.8
KOG2321	703	consensus WD40 repeat protein [General function pr	99.8
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.78
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.78
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
PRK03629	429	tolB translocation protein TolB; Provisional	99.76
PRK04922	433	tolB translocation protein TolB; Provisional	99.74
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.69
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.69
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
KOG2315	566	consensus Predicted translation initiation factor	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.63
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.61
KOG2314	698	consensus Translation initiation factor 3, subunit	99.61
PRK00178	430	tolB translocation protein TolB; Provisional	99.61
PRK00178	430	tolB translocation protein TolB; Provisional	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
PRK01029	428	tolB translocation protein TolB; Provisional	99.6
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.59
PRK04792	448	tolB translocation protein TolB; Provisional	99.59
KOG4547	541	consensus WD40 repeat-containing protein [General	99.59
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.58
PRK04792	448	tolB translocation protein TolB; Provisional	99.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.58
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.54
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.52
KOG4547	541	consensus WD40 repeat-containing protein [General	99.52
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.48
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.46
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.46
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.46
COG4946	668	Uncharacterized protein related to the periplasmic	99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.42
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.41
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.39
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.37
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.34
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.34
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.34
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.33
KOG2315	566	consensus Predicted translation initiation factor	99.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.31
KOG2314	698	consensus Translation initiation factor 3, subunit	99.31
COG4946	668	Uncharacterized protein related to the periplasmic	99.28
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.28
PRK04043	419	tolB translocation protein TolB; Provisional	99.26
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.25
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.24
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.24
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.23
PRK04043	419	tolB translocation protein TolB; Provisional	99.23
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.22
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.2
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.19
KOG2695	425	consensus WD40 repeat protein [General function pr	99.18
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.17
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.17
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.13
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.02
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.01
KOG2695	425	consensus WD40 repeat protein [General function pr	99.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.0
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.96
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.87
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.83
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.74
PRK02888	635	nitrous-oxide reductase; Validated	98.72
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.7
PRK02888	635	nitrous-oxide reductase; Validated	98.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.67
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.58
KOG3621	726	consensus WD40 repeat-containing protein [General	98.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.56
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.55
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.52
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.49
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.47
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.45
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.44
KOG3621	726	consensus WD40 repeat-containing protein [General	98.42
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.4
COG3391	381	Uncharacterized conserved protein [Function unknow	98.39
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.39
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.33
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.32
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.3
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.29
COG3391	381	Uncharacterized conserved protein [Function unknow	98.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.27
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.18
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.13
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.09
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.08
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.07
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.05
KOG2395	644	consensus Protein involved in vacuole import and d	98.03
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.95
KOG2444	238	consensus WD40 repeat protein [General function pr	97.94
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.93
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.92
PHA02713	557	hypothetical protein; Provisional	97.92
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.89
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.87
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.84
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.78
PRK13616	591	lipoprotein LpqB; Provisional	97.77
PRK13616	591	lipoprotein LpqB; Provisional	97.73
KOG2395	644	consensus Protein involved in vacuole import and d	97.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.7
PHA02713	557	hypothetical protein; Provisional	97.67
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.59
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.55
COG5276	370	Uncharacterized conserved protein [Function unknow	97.47
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.45
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.4
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.38
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.32
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.22
KOG2444	238	consensus WD40 repeat protein [General function pr	97.21
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.19
PHA03098	534	kelch-like protein; Provisional	97.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.15
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.08
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.08
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.08
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.94
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.9
PHA03098	534	kelch-like protein; Provisional	96.85
PHA02790	480	Kelch-like protein; Provisional	96.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.67
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.67
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.65
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.6
PRK13684	334	Ycf48-like protein; Provisional	96.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.52
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.45
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.44
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.43
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.42
COG5167	776	VID27 Protein involved in vacuole import and degra	96.41
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.37
PHA02790	480	Kelch-like protein; Provisional	96.37
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.3
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.29
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.24
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.21
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.13
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.08
KOG2247	615	consensus WD40 repeat-containing protein [General	96.05
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	95.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.92
COG5167	776	VID27 Protein involved in vacuole import and degra	95.86
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.86
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.62
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.5
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.44
PRK10115	686	protease 2; Provisional	95.34
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.29
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.25
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.14
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.08
KOG2247	615	consensus WD40 repeat-containing protein [General	95.03
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.77
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.75
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.67
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.47
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.41
PRK10115	686	protease 2; Provisional	94.21
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.16
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.13
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.92
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.88
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.87
COG4590	733	ABC-type uncharacterized transport system, permeas	93.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.45
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.19
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.17
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.68
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.37
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.17
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.05
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.78
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.73
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	91.71
COG4590	733	ABC-type uncharacterized transport system, permeas	91.67
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.28
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.2
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.02
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.51
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.33
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.31
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.3
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.02
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.01
PRK13684	334	Ycf48-like protein; Provisional	89.77
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.76
PLN02153	341	epithiospecifier protein	89.3
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.22
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.44
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.01
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.95
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	87.86
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.67
PLN02153	341	epithiospecifier protein	87.49
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.29
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.22
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.21
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.09
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.78
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.74
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.3
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.56
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	85.22
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.56
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.33
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	84.03
PLN02193	470	nitrile-specifier protein	83.38
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	83.15
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	81.8

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-61  Score=371.26  Aligned_cols=335  Identities=18%  Similarity=0.214  Sum_probs=302.1

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      +-..+.||.++|.|++|+|+ +..||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus       107 CssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eccccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            34568899999999999998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcC-----CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNP-----KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      .++++  +....+.+|...|++++|.|     ..++|++++.||.++|||+..++++..+. +|+.+|+|+.|-.+|  +
T Consensus       186 pktg~--~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g--l  260 (480)
T KOG0271|consen  186 PKTGQ--QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG--L  260 (480)
T ss_pred             CCCCC--cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc--e
Confidence            99875  45567888999999999987     56789999999999999999999999999 999999999998777  8


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc-----ccc-------------------
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD-----MLD-------------------  217 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~-------------------  217 (375)
                      +++|+.|++|++|+...|.+...++ +            |...|+.++.+.+.     .++                   
T Consensus       261 iySgS~DrtIkvw~a~dG~~~r~lk-G------------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  261 IYSGSQDRTIKVWRALDGKLCRELK-G------------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             EEecCCCceEEEEEccchhHHHhhc-c------------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            9999999999999999999988887 3            57788888887431     111                   


Q ss_pred             ------CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee---eeeeecCCcceeEeeeeecC
Q 017194          218 ------KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGG  288 (375)
Q Consensus       218 ------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~~~~~~~  288 (375)
                            ..+..|++|+.|.++.+|+.....++......+...+..+.||||+++++.   ..+...+.....+.+..+++
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence                  234569999999999999998877777777777788999999999999997   34556677788889999999


Q ss_pred             CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194          289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                      |-..|+.++|+   .|.++|++|+.|.++++|++++.         ++...+.+|.+.|.++.|+| ||+.+++|+.|..
T Consensus       408 Hv~~VYqvaws---aDsRLlVS~SkDsTLKvw~V~tk---------Kl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv  474 (480)
T KOG0271|consen  408 HVAAVYQVAWS---ADSRLLVSGSKDSTLKVWDVRTK---------KLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKV  474 (480)
T ss_pred             ccceeEEEEec---cCccEEEEcCCCceEEEEEeeee---------eecccCCCCCceEEEEEecC-CCceeecCCCceE
Confidence            99999999999   99999999999999999999998         77788999999999999999 9999999999999


Q ss_pred             EEEEe
Q 017194          369 VKVYS  373 (375)
Q Consensus       369 v~iw~  373 (375)
                      +++|.
T Consensus       475 ~~lw~  479 (480)
T KOG0271|consen  475 LRLWR  479 (480)
T ss_pred             EEeec
Confidence            99995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-54  Score=337.48  Aligned_cols=284  Identities=20%  Similarity=0.307  Sum_probs=266.4

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC--CCeEEEEcCCCeEEEEECCCC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      |-+.+|..+.|+++ ++.||||+-+|.+++|+..+...+.++.+|...|.++.|+|.  +..+++++.||++++|++.+.
T Consensus       173 gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            56789999999999 899999999999999999999999999999999999999997  568999999999999999853


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                         .++..+.+|...|..++|+|+|++|++++.|.+-++||+++++.+.... +|...|.+++|.|+|. ++++|+.|..
T Consensus       252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGS-L~~tGGlD~~  326 (459)
T KOG0272|consen  252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGS-LAATGGLDSL  326 (459)
T ss_pred             ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecCCCc-eeeccCccch
Confidence               6778888999999999999999999999999999999999998888778 9999999999999999 8999999999


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT  250 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  250 (375)
                      -++||+++++++..+. +            |...|.+|+|+|      +|..||+|+.|++++|||++..          
T Consensus       327 ~RvWDlRtgr~im~L~-g------------H~k~I~~V~fsP------NGy~lATgs~Dnt~kVWDLR~r----------  377 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMFLA-G------------HIKEILSVAFSP------NGYHLATGSSDNTCKVWDLRMR----------  377 (459)
T ss_pred             hheeecccCcEEEEec-c------------cccceeeEeECC------CceEEeecCCCCcEEEeeeccc----------
Confidence            9999999999999887 3            578999999999      8999999999999999999963          


Q ss_pred             CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee
Q 017194          251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT  330 (375)
Q Consensus       251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  330 (375)
                                                    ..++.+.+|..-|+.+.|+|  ..|.+|+|++.|++++||...+.     
T Consensus       378 ------------------------------~~ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~-----  420 (459)
T KOG0272|consen  378 ------------------------------SELYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTW-----  420 (459)
T ss_pred             ------------------------------ccceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCc-----
Confidence                                          44778999999999999994  38899999999999999999999     


Q ss_pred             cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          331 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                          .+++.+.||.+.|.++.+++ |++++++++.|.++++|.
T Consensus       421 ----~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 ----SPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ----ccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence                78899999999999999999 999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-50  Score=300.76  Aligned_cols=294  Identities=14%  Similarity=0.208  Sum_probs=264.8

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      +..++|+||.+.|+++.|++| .+.|++++.||.+.|||.-+......++.....|..++|+|.|++++.|+-|+...||
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            345789999999999999999 8999999999999999999988888898889999999999999999999999999999


Q ss_pred             ECCCCC---cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee-CCCcE
Q 017194           86 DVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWE  161 (375)
Q Consensus        86 d~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  161 (375)
                      ++.+..   .....+.+.+|.+.+.++.|.+| ..|++++.|.+..+||+++++.+..|. +|.+.|.++.++| +++ .
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~n-t  201 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGN-T  201 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCC-e
Confidence            998542   22455668899999999999885 488999999999999999999999999 9999999999999 555 8


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      |++|+.|+..++||++.+.+.+.+..             |...|+++.|.|      +|.-+++|+.|++.++||++..+
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF~g-------------hesDINsv~ffP------~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTFEG-------------HESDINSVRFFP------SGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             EEecccccceeeeeccCcceeEeecc-------------cccccceEEEcc------CCCeeeecCCCceeEEEeecCCc
Confidence            99999999999999999999999983             578999999999      89999999999999999999754


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                      +...                                      +.-..-..+|++++||   ..|++|.+|..|..+.+||
T Consensus       263 ~~a~--------------------------------------ys~~~~~~gitSv~FS---~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  263 ELAV--------------------------------------YSHDSIICGITSVAFS---KSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             EEee--------------------------------------eccCcccCCceeEEEc---ccccEEEeeecCCceeEee
Confidence            3321                                      1222335689999999   9999999999999999999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      .-.+         +.+..+.+|..+|.++..+| ||--+++|+.|..++||.
T Consensus       302 tlk~---------e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  302 TLKG---------ERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccc---------ceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence            9988         77778899999999999999 999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.1e-49  Score=287.16  Aligned_cols=279  Identities=17%  Similarity=0.286  Sum_probs=249.5

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN  107 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  107 (375)
                      .-+|++++.|.+|++|...+|.+..+++.....|+.+...|+++.|++++ ...|++||+++++. .++..+.+|...|+
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np-~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP-NPVATFEGHTKNVT   87 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC-CceeEEeccCCceE
Confidence            45899999999999999999999999998899999999999999988877 57899999998764 58889999999999


Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec
Q 017194          108 QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       108 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  187 (375)
                      .+.|..+|+++++|++||+++|||++...+.+.++  |..+|+++..+|+.. .|++|..+|.|++||+....+...+..
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCC
Confidence            99999999999999999999999999987777776  889999999999987 799999999999999998877766653


Q ss_pred             CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                      .            ....|.++.+.|      +|.+++.+...|..++|++-+...                         
T Consensus       165 e------------~~~~i~sl~v~~------dgsml~a~nnkG~cyvW~l~~~~~-------------------------  201 (311)
T KOG0315|consen  165 E------------DDTSIQSLTVMP------DGSMLAAANNKGNCYVWRLLNHQT-------------------------  201 (311)
T ss_pred             C------------CCcceeeEEEcC------CCcEEEEecCCccEEEEEccCCCc-------------------------
Confidence            3            346899999999      899999999999999999986321                         


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccce
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV  347 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  347 (375)
                               ...+.++.+++.|+..+..+.+|   ||+++||+++.|.+++||+.++.-        +....+.+|...+
T Consensus       202 ---------~s~l~P~~k~~ah~~~il~C~lS---Pd~k~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWv  261 (311)
T KOG0315|consen  202 ---------ASELEPVHKFQAHNGHILRCLLS---PDVKYLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWV  261 (311)
T ss_pred             ---------cccceEhhheecccceEEEEEEC---CCCcEEEeecCCceEEEEecCCce--------eeEEEeecCCceE
Confidence                     12345667899999999999999   999999999999999999999972        4455778999999


Q ss_pred             eeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          348 NWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       348 ~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      .+.+|+. ||+||++++.|+.+++|+++
T Consensus       262 Wdc~FS~-dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  262 WDCAFSA-DGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             Eeeeecc-CccEEEecCCCCceeecccc
Confidence            9999999 99999999999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-48  Score=284.63  Aligned_cols=305  Identities=15%  Similarity=0.227  Sum_probs=251.1

Q ss_pred             CCcCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-----CceeeEeeecCccEEEEEEeCCCCeEEE
Q 017194            1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----KDVQLVTDVGNGPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~~   75 (375)
                      |++......+|++|++.|+.++..+.+.+.+++++.|.++.+|++..     |.+++.+.+|...|..+..+++|++.++
T Consensus         1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS   80 (315)
T KOG0279|consen    1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS   80 (315)
T ss_pred             CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence            67778888899999999999999998788999999999999999754     5568899999999999999999999999


Q ss_pred             EcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                      ++.|+.+++||+.++   +....+.+|...|.+++|++|++.|++|+.|.+|++|++........-...+++.|.+++|+
T Consensus        81 ~swD~~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             ccccceEEEEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence            999999999999976   55667788999999999999999999999999999999876555444442338899999999


Q ss_pred             eC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          156 PW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       156 ~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      |+  .+ ++++++.|++|++||+++.+....+. +            |...++.++++|      ||.++++|+.||.+.
T Consensus       158 P~~~~p-~Ivs~s~DktvKvWnl~~~~l~~~~~-g------------h~~~v~t~~vSp------DGslcasGgkdg~~~  217 (315)
T KOG0279|consen  158 PNESNP-IIVSASWDKTVKVWNLRNCQLRTTFI-G------------HSGYVNTVTVSP------DGSLCASGGKDGEAM  217 (315)
T ss_pred             CCCCCc-EEEEccCCceEEEEccCCcchhhccc-c------------ccccEEEEEECC------CCCEEecCCCCceEE
Confidence            98  45 79999999999999999887766665 4            678999999999      899999999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||++.++                                        .++.+ +|...|.+++|+   |+...|+.+ .
T Consensus       218 LwdL~~~k----------------------------------------~lysl-~a~~~v~sl~fs---pnrywL~~a-t  252 (315)
T KOG0279|consen  218 LWDLNEGK----------------------------------------NLYSL-EAFDIVNSLCFS---PNRYWLCAA-T  252 (315)
T ss_pred             EEEccCCc----------------------------------------eeEec-cCCCeEeeEEec---CCceeEeec-c
Confidence            99999753                                        22333 568899999999   776555554 4


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +..|+|||+.+...+........-.....-.....+++|++ ||..|++|..|+.|++|.+
T Consensus       253 ~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  253 ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEe
Confidence            55699999999843311100000001111233467789998 9999999999999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-48  Score=300.98  Aligned_cols=287  Identities=18%  Similarity=0.210  Sum_probs=236.8

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII  130 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (375)
                      -..+.+|.++|.+++|+|+|..|++|+.|.++++||+.+.   .+..+.++|...|.+++|+||++.||+|+.||+|++|
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            4556789999999999999999999999999999999974   5667788899999999999999999999999999999


Q ss_pred             eCcCcee-eeeEecCcccceeEEEEeeC-----CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCc
Q 017194          131 DIRQHCL-YKSLRAGHSSICSSVQFIPW-----KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF  204 (375)
Q Consensus       131 d~~~~~~-~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (375)
                      |.++++. .+.+. +|...|++++|.|-     .+ +|++++.||.|+|||+..+.++..+. +            |..+
T Consensus       185 dpktg~~~g~~l~-gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~ls-g------------HT~~  249 (480)
T KOG0271|consen  185 DPKTGQQIGRALR-GHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLS-G------------HTAS  249 (480)
T ss_pred             cCCCCCccccccc-CcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEec-c------------Cccc
Confidence            9998865 46777 99999999999763     34 79999999999999999988888876 4            6789


Q ss_pred             eeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC----------CCCCceeecccccc---------
Q 017194          205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----------PLKGSQSTSKVNIR---------  265 (375)
Q Consensus       205 v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~s~~g~~---------  265 (375)
                      |+++.|--       ..++++|+.|++|++|+...+.....+..+..          ...+.-+|.|.|++         
T Consensus       250 VTCvrwGG-------~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  250 VTCVRWGG-------EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             eEEEEEcC-------CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            99999974       68999999999999999988665544433211          00111123333332         


Q ss_pred             ----------------eee---eeeeecCC-cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          266 ----------------DAE---MEILDQSG-GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       266 ----------------~~~---~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                      +..   ....-.+. ....+++..+.+|..-|+.+.||   ||++++|+++.|..|++|+.+++
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS---Pd~r~IASaSFDkSVkLW~g~tG  399 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS---PDGRYIASASFDKSVKLWDGRTG  399 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC---CCccEEEEeecccceeeeeCCCc
Confidence                            211   00111122 22334667889999999999999   99999999999999999999999


Q ss_pred             eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                               +.+..+.+|-..|..++|+. |.++|++|+.|.++++|++.
T Consensus       400 ---------k~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  400 ---------KFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             ---------chhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEee
Confidence                     88999999999999999998 99999999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.2e-49  Score=305.82  Aligned_cols=252  Identities=17%  Similarity=0.188  Sum_probs=234.2

Q ss_pred             CCCCCeeeecCCCceeEEEEecC-CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      +...+.+|.||++.|.++.|+|. ++..+|||+.||++++|++++..++..+.+|...|..++|+|+|++|++++.|.+-
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW  285 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW  285 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence            45678899999999999999998 46789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      ++||++++.   .+....+|...|.+++|.|||.++++|+.|..-+|||+++++++..+. +|..+|.+++|+|+|- .+
T Consensus       286 RlWD~~tk~---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy-~l  360 (459)
T KOG0272|consen  286 RLWDLETKS---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGY-HL  360 (459)
T ss_pred             hhcccccch---hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCce-EE
Confidence            999999754   344456789999999999999999999999999999999999999999 9999999999999997 89


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ++|+.|++++|||++..+.+..+..             |..-|..+.|+|.     .|.+|++++.|+++++|..++.  
T Consensus       361 ATgs~Dnt~kVWDLR~r~~ly~ipA-------------H~nlVS~Vk~~p~-----~g~fL~TasyD~t~kiWs~~~~--  420 (459)
T KOG0272|consen  361 ATGSSDNTCKVWDLRMRSELYTIPA-------------HSNLVSQVKYSPQ-----EGYFLVTASYDNTVKIWSTRTW--  420 (459)
T ss_pred             eecCCCCcEEEeeecccccceeccc-------------ccchhhheEeccc-----CCeEEEEcccCcceeeecCCCc--
Confidence            9999999999999999888887764             5788999999985     6999999999999999999874  


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                            +++..+.||.+.|.+++++   +|+.++++++.|+++++|.
T Consensus       421 --------------------------------------~~~ksLaGHe~kV~s~Dis---~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 --------------------------------------SPLKSLAGHEGKVISLDIS---PDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             --------------------------------------ccchhhcCCccceEEEEec---cCCceEEEeccCceeeecc
Confidence                                                  6778999999999999999   9999999999999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-47  Score=290.62  Aligned_cols=297  Identities=19%  Similarity=0.245  Sum_probs=271.5

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      .+...+.+|..+|+.+-|+|+ -..++++++|++|++||..+++....+++|.+.+..++|+..|+++++++.|-.+++|
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            345667889999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      |..+  ..+.++...+|+..|.++.|-|.|.+|++++.|.+|+.|++.++-++.+|. +|...|..++.+.||. +++++
T Consensus       178 d~~~--~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGt-i~As~  253 (406)
T KOG0295|consen  178 DFDT--FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGT-IIASC  253 (406)
T ss_pred             eHHH--HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCee-EEEec
Confidence            9985  356777788899999999999999999999999999999999999999999 9999999999999998 89999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc---------CCCCEEEEEecCCcEEEEe
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD---------KTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~l~~~~~dg~i~i~d  236 (375)
                      +.|.++++|-+.++++...+..             |..+|.+++|.|...++         ..+.++.+++.|++|++||
T Consensus       254 s~dqtl~vW~~~t~~~k~~lR~-------------hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKAELRE-------------HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             CCCceEEEEEeccchhhhhhhc-------------cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence            9999999999999977766653             46789999998875431         1246999999999999999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      +.++                                        .++.++.+|...|..++|+   |.|+||+++.+|++
T Consensus       321 v~tg----------------------------------------~cL~tL~ghdnwVr~~af~---p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  321 VSTG----------------------------------------MCLFTLVGHDNWVRGVAFS---PGGKYILSCADDKT  357 (406)
T ss_pred             ccCC----------------------------------------eEEEEEecccceeeeeEEc---CCCeEEEEEecCCc
Confidence            9985                                        6788999999999999999   99999999999999


Q ss_pred             EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +++||+++.         .++..+..|..-++++.|+. +..++++|+-|..+++|.
T Consensus       358 lrvwdl~~~---------~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  358 LRVWDLKNL---------QCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEEEEeccc---------eeeeccCCCcceeEEEecCC-CCceEEeccccceeeeee
Confidence            999999999         67778889999999999987 667999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.9e-45  Score=292.97  Aligned_cols=351  Identities=17%  Similarity=0.188  Sum_probs=282.0

Q ss_pred             CcCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194            2 TDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE   81 (375)
Q Consensus         2 ~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~   81 (375)
                      -+++..+..+.||...|++++|-|...-.++||++|++|.+|+-...+...++..|..-|+++.|+|||.++++++.||+
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence            35777888999999999999999987778999999999999997777778888899999999999999999999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee----------------------
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK----------------------  139 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------  139 (375)
                      +.+||=.+++....+..-.+|++.|..++|+||++.+++++.|.+++|||+.+.++++                      
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence            9999999988877777777999999999999999999999999999999998665444                      


Q ss_pred             ---------------------eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce-----------EEec
Q 017194          140 ---------------------SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-----------IVNF  187 (375)
Q Consensus       140 ---------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-----------~~~~  187 (375)
                                           .+. +|...|+++..+|+++ .|++|+.||.|.-||..++..-+           .+..
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~  371 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA  371 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence                                 334 7999999999999998 79999999999999997654321           1110


Q ss_pred             CC-CC-------------------C---------CCCCCccc----------------------------CCCceeEEee
Q 017194          188 GL-PE-------------------N---------NGNAGQCY----------------------------NPAFVHAIAI  210 (375)
Q Consensus       188 ~~-~~-------------------~---------~~~~~~~~----------------------------~~~~v~~~~~  210 (375)
                      .. .+                   .         .+....+.                            -.....++++
T Consensus       372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv  451 (603)
T KOG0318|consen  372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV  451 (603)
T ss_pred             cCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence            00 00                   0         00000000                            0011234555


Q ss_pred             cCCccccCCCCEEEEEecCCcEEEEeCCCccee-ecccccCCCCCCceeecccccceeee------eeeecCCcceeEee
Q 017194          211 PDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLD  283 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~~~~~------~~~~~~~~~~~~~~  283 (375)
                      +|      ++..+++|+.||.|++|.+...... .........+++.+++|||+.+++..      -.++......  ..
T Consensus       452 ~~------~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~  523 (603)
T KOG0318|consen  452 SP------DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KT  523 (603)
T ss_pred             cC------CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ec
Confidence            55      8999999999999999999986643 33556677889999999999999972      2233333222  33


Q ss_pred             eeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe
Q 017194          284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       284 ~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  363 (375)
                      ....-|...|.+++|+   |+..++|+|+-|-.|.||+++...        +.+.....|...|+.+.|-  +...+++.
T Consensus       524 ~~w~FHtakI~~~aWs---P~n~~vATGSlDt~Viiysv~kP~--------~~i~iknAH~~gVn~v~wl--de~tvvSs  590 (603)
T KOG0318|consen  524 NRWAFHTAKINCVAWS---PNNKLVATGSLDTNVIIYSVKKPA--------KHIIIKNAHLGGVNSVAWL--DESTVVSS  590 (603)
T ss_pred             ceeeeeeeeEEEEEeC---CCceEEEeccccceEEEEEccChh--------hheEeccccccCceeEEEe--cCceEEec
Confidence            3455689999999999   999999999999999999999874        4455666799999999996  45689999


Q ss_pred             eCCCeEEEEecC
Q 017194          364 DTSKVVKVYSIS  375 (375)
Q Consensus       364 ~~dg~v~iw~~~  375 (375)
                      +.|..|++|+++
T Consensus       591 G~Da~iK~W~v~  602 (603)
T KOG0318|consen  591 GQDANIKVWNVT  602 (603)
T ss_pred             cCcceeEEeccc
Confidence            999999999974

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.6e-47  Score=301.01  Aligned_cols=295  Identities=16%  Similarity=0.234  Sum_probs=262.1

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      +.+..+.||+..|+++.|.|..+.+|++++.|+.|+||++.. +.+++++.+|..+|.+++|+++|..+++++.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            456788999999999999995589999999999999999876 8899999999999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      ||+++|+....+..    ...+.++.|.|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+.|-++|. .++
T Consensus       285 wDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~-rFi  358 (503)
T KOG0282|consen  285 WDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGR-RFI  358 (503)
T ss_pred             eccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCc-eEe
Confidence            99999987766665    5678999999988 789999999999999999999999999 8999999999999999 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +.+.|+++++|+.+.+-+++.+...            ......++..+|      ++++++.-+.|+.|.+|.+....  
T Consensus       359 ssSDdks~riWe~~~~v~ik~i~~~------------~~hsmP~~~~~P------~~~~~~aQs~dN~i~ifs~~~~~--  418 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIPVPIKNIADP------------EMHTMPCLTLHP------NGKWFAAQSMDNYIAIFSTVPPF--  418 (503)
T ss_pred             eeccCccEEEEEcCCCccchhhcch------------hhccCcceecCC------CCCeehhhccCceEEEEeccccc--
Confidence            9999999999999987776655433            235677888988      89999999999999999976421  


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC--ccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                         .......+.+|.  +.-..+.||   |||.+|++|+.||.+.+||
T Consensus       419 -----------------------------------r~nkkK~feGh~vaGys~~v~fS---pDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  419 -----------------------------------RLNKKKRFEGHSVAGYSCQVDFS---PDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             -----------------------------------ccCHhhhhcceeccCceeeEEEc---CCCCeEEeecCCccEEEee
Confidence                                               123334667774  456678899   9999999999999999999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      .++.         +++..+..|.+++..+.|+|.....+|+|+.||.|++|+
T Consensus       461 wkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  461 WKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             chhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9998         889999999999999999998888999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5e-45  Score=279.24  Aligned_cols=298  Identities=18%  Similarity=0.293  Sum_probs=259.3

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      ..+.-+.++||.+.|.|+++.|- +++|++|+.|++|+|||+.+|+...++.+|-..|..+++++...|+++++.|+.|+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            34566788999999999999998 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      .||++.   .+.+..+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+. +|..+|..+.+.|-++ .++
T Consensus       219 CwDLe~---nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dp-qvi  293 (460)
T KOG0285|consen  219 CWDLEY---NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDP-QVI  293 (460)
T ss_pred             EEechh---hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCC-ceE
Confidence            999995   46778888999999999999999999999999999999999999999999 9999999999999888 699


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +|+.|++|++||++.++....+..             |...+.+++.+|      ....+++++.| .|+-|++..+   
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt~-------------hkksvral~lhP------~e~~fASas~d-nik~w~~p~g---  350 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLTH-------------HKKSVRALCLHP------KENLFASASPD-NIKQWKLPEG---  350 (460)
T ss_pred             EecCCceEEEeeeccCceeEeeec-------------ccceeeEEecCC------chhhhhccCCc-cceeccCCcc---
Confidence            999999999999999998887763             578899999999      68888888887 6899999864   


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                           ..+..+.+|..-|++++..   .| .++++|+++|.+.+||.+
T Consensus       351 -------------------------------------~f~~nlsgh~~iintl~~n---sD-~v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  351 -------------------------------------EFLQNLSGHNAIINTLSVN---SD-GVLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             -------------------------------------chhhccccccceeeeeeec---cC-ceEEEcCCceEEEEEecC
Confidence                                                 3444688999999999987   55 489999999999999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      ++...+........ ........|.+.+|.. .|..|++|..|.+|++|.
T Consensus       390 sg~nyQ~~~t~vqp-GSl~sEagI~as~fDk-tg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  390 SGHNYQRGQTIVQP-GSLESEAGIFASCFDK-TGSRLITGEADKTIKMYK  437 (460)
T ss_pred             cCcccccccccccC-CccccccceeEEeecc-cCceEEeccCCcceEEEe
Confidence            98543211000000 0112345788889987 788999999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-46  Score=291.95  Aligned_cols=282  Identities=18%  Similarity=0.240  Sum_probs=252.1

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      +-+|..+.|.|+ |+.|++|+..|...+|+..+-.....++.|..+|.++.|++++.++++|..+|.|++|+...    .
T Consensus        96 kc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----n  170 (464)
T KOG0284|consen   96 KCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM----N  170 (464)
T ss_pred             ccceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch----h
Confidence            357999999999 89999999999999999876666677789999999999999999999999999999999873    3


Q ss_pred             ccccccCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194           95 PLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        95 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                      .++.+..| ...|++++|+|+...++++++||+|+|||....+....+. +|.-.|.+++|+|... ++++++.|..|++
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg-LiasgskDnlVKl  248 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG-LIASGSKDNLVKL  248 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc-eeEEccCCceeEe
Confidence            34444444 4899999999999999999999999999999988888888 9999999999999988 8999999999999


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL  253 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  253 (375)
                      ||.+++.++.++..             |...|..+.|+|      ++++|++++.|..+++||+++.             
T Consensus       249 WDprSg~cl~tlh~-------------HKntVl~~~f~~------n~N~Llt~skD~~~kv~DiR~m-------------  296 (464)
T KOG0284|consen  249 WDPRSGSCLATLHG-------------HKNTVLAVKFNP------NGNWLLTGSKDQSCKVFDIRTM-------------  296 (464)
T ss_pred             ecCCCcchhhhhhh-------------ccceEEEEEEcC------CCCeeEEccCCceEEEEehhHh-------------
Confidence            99999999988863             578899999999      7999999999999999999963             


Q ss_pred             CCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecch
Q 017194          254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN  333 (375)
Q Consensus       254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  333 (375)
                                                 +.+..+++|+..|++++|+|  -...+|.+|+.||.|..|.+...+       
T Consensus       297 ---------------------------kEl~~~r~Hkkdv~~~~WhP--~~~~lftsgg~Dgsvvh~~v~~~~-------  340 (464)
T KOG0284|consen  297 ---------------------------KELFTYRGHKKDVTSLTWHP--LNESLFTSGGSDGSVVHWVVGLEE-------  340 (464)
T ss_pred             ---------------------------HHHHHhhcchhhheeecccc--ccccceeeccCCCceEEEeccccc-------
Confidence                                       45568889999999999997  355689999999999999998543       


Q ss_pred             hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          334 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                       ++.....+|...|++++|+| -|.+|++|+.|.++++|.
T Consensus       341 -p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  341 -PLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT  378 (464)
T ss_pred             -cccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence             55556678999999999999 899999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-43  Score=261.77  Aligned_cols=297  Identities=17%  Similarity=0.194  Sum_probs=247.4

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC---ceeeEe-eecCccEEEEEEeCCCCeEEEEcCCC
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      ...++.+++|++.|..++|+|-.|..|||++.|+.|++|+...+   .+...+ .+|+..|.+++|+|.|++|++++.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            34578899999999999999975679999999999999998853   333334 36999999999999999999999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc---eeeeeEecCcccceeEEEEeeC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      ++.||.-..+ ..+.+..+++|+..|.+++|+++|++||+++.|..|.||.+..+   ++...++ .|...|..+.|+|.
T Consensus        84 t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   84 TVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT  161 (312)
T ss_pred             eEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence            9999997644 46788999999999999999999999999999999999998743   5677888 99999999999998


Q ss_pred             CCcEEEEeecCCeEEEeeCCC-C--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          158 KPWEVISGGLDSKLVMWDFSK-G--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       158 ~~~~l~~~~~d~~i~~wd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                      .. +|++++.|.+|++|+-.. .  .+..++..             |...|.+++|.+      .|..|++++.|++++|
T Consensus       162 ~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g-------------~~~TVW~~~F~~------~G~rl~s~sdD~tv~I  221 (312)
T KOG0645|consen  162 ED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDG-------------HENTVWSLAFDN------IGSRLVSCSDDGTVSI  221 (312)
T ss_pred             cc-eeEEeccCCeEEEEeecCCCCeeEEEEecC-------------ccceEEEEEecC------CCceEEEecCCcceEe
Confidence            87 899999999999998762 2  35556552             456899999999      7999999999999999


Q ss_pred             EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND  314 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d  314 (375)
                      |...+.                                            --.-|..+++.++|.     ...|++++.|
T Consensus       222 w~~~~~--------------------------------------------~~~~~sr~~Y~v~W~-----~~~IaS~ggD  252 (312)
T KOG0645|consen  222 WRLYTD--------------------------------------------LSGMHSRALYDVPWD-----NGVIASGGGD  252 (312)
T ss_pred             eeeccC--------------------------------------------cchhcccceEeeeec-----ccceEeccCC
Confidence            997642                                            122467889999985     3489999999


Q ss_pred             CeEEEEeCCCceeeeecchhhh-hhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          315 KLVKVWDCSRFQGVQTSINNDL-LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       315 g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +.|++|.-......   +.-++ ......|...|+++.|.|...+.|++++.||.|++|.++
T Consensus       253 ~~i~lf~~s~~~d~---p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  253 DAIRLFKESDSPDE---PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CEEEEEEecCCCCC---chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99999987753111   01122 234557999999999999557899999999999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-44  Score=265.56  Aligned_cols=262  Identities=21%  Similarity=0.316  Sum_probs=220.5

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      ..+..++.|+||...|..++.+++ +++.++++.|+++++||+.+++..+.+.+|...|.+++|++|.+++++|+.|++|
T Consensus        51 ~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi  129 (315)
T KOG0279|consen   51 KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI  129 (315)
T ss_pred             ccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCccee
Confidence            356778999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      ++|+...+... .+.. ..+.+.|.|+.|+|+  ..+|++++.|++|++||+++.+....+. +|++.++.++++|||. 
T Consensus       130 klwnt~g~ck~-t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-  205 (315)
T KOG0279|consen  130 KLWNTLGVCKY-TIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-  205 (315)
T ss_pred             eeeeecccEEE-EEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-
Confidence            99998854322 2221 122678999999997  7889999999999999999999999999 9999999999999999 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      +.++|+.||.+.+||++.++.+..+.              +...|.+++|+|      +...|+.+ .+..|+|||+.+.
T Consensus       206 lcasGgkdg~~~LwdL~~~k~lysl~--------------a~~~v~sl~fsp------nrywL~~a-t~~sIkIwdl~~~  264 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGKNLYSLE--------------AFDIVNSLCFSP------NRYWLCAA-TATSIKIWDLESK  264 (315)
T ss_pred             EEecCCCCceEEEEEccCCceeEecc--------------CCCeEeeEEecC------CceeEeec-cCCceEEEeccch
Confidence            89999999999999999999988887              458999999999      45455544 4556999999986


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      ............                            .   ..........+++|+   +||..|++|-.|+.|++|
T Consensus       265 ~~v~~l~~d~~g----------------------------~---s~~~~~~~clslaws---~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  265 AVVEELKLDGIG----------------------------P---SSKAGDPICLSLAWS---ADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             hhhhhccccccc----------------------------c---ccccCCcEEEEEEEc---CCCcEEEeeecCCcEEEE
Confidence            555433221100                            0   122224456778999   999999999999999999


Q ss_pred             eCCC
Q 017194          321 DCSR  324 (375)
Q Consensus       321 d~~~  324 (375)
                      .+..
T Consensus       311 qv~~  314 (315)
T KOG0279|consen  311 QVAK  314 (315)
T ss_pred             Eeec
Confidence            8753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.4e-43  Score=269.04  Aligned_cols=330  Identities=16%  Similarity=0.216  Sum_probs=272.3

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      .+.+|+.|+++|.+++.+|+ .+++|||+.|..-.||++.+++....+.+|+..|+++.|+.+|.+||+|.-+|.|+||.
T Consensus        56 S~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            35689999999999999996 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ..++.....+.   ..-..|.-+.|+|.+..|++|+.||.+.+|.+.++...+.+. +|+.++++=.|.|+|+ .++++.
T Consensus       135 ~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGK-r~~tgy  209 (399)
T KOG0296|consen  135 VSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGK-RILTGY  209 (399)
T ss_pred             cccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCc-eEEEEe
Confidence            99876544443   224678889999999999999999999999999888888899 9999999999999999 799999


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                      .||+|++||+.+++++..+...            .....+++.++.      .+..++.|+.++.+++-+..+++.....
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~------------e~~~~~~~~~~~------~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQA------------EGLELPCISLNL------AGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             cCceEEEEecCCCceeEEeccc------------ccCcCCcccccc------ccceeEeccCCccEEEEccccceEEEec
Confidence            9999999999999999888733            124556777776      6888999999999999888887766644


Q ss_pred             cc-------cCCCCCCceeecccccce---ee---eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          247 KS-------TTKPLKGSQSTSKVNIRD---AE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       247 ~~-------~~~~~~~~~~~s~~g~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      ..       .......++.+.|....+   +.   .|....++....+ ++..-.|..+|..+.|-   + ..+|++++.
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~---~-t~~l~t~c~  346 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWL---N-TDYLLTACA  346 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEc---C-cchheeecc
Confidence            42       122233344444433322   21   1222222222222 23445688899999998   6 679999999


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ||.|+.||.+++         .++..+.+|...|.+++.+| +.++++|+|.|++.+|++++
T Consensus       347 ~g~v~~wDaRtG---------~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  347 NGKVRQWDARTG---------QLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CceEEeeecccc---------ceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            999999999999         77789999999999999999 99999999999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.7e-43  Score=264.56  Aligned_cols=294  Identities=20%  Similarity=0.284  Sum_probs=251.8

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc-cCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .++..+.+|++.|+.+.|+|+ |.+|||||.|..|.+|++. ..+....+++|.+.|..+.|.++++.+++++.|.+++.
T Consensus        38 ap~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             chhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            345567899999999999998 8999999999999999954 45567888899999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      ||.++++   .+..+++|..-|+.+.-+.-| .++.+++.|+++++||+++...++++.  ...+++++.|...+. .+.
T Consensus       117 wD~~tG~---~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~-qv~  190 (338)
T KOG0265|consen  117 WDAETGK---RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSD-QVI  190 (338)
T ss_pred             Eecccce---eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEeccccc-cee
Confidence            9999875   445566678888888844444 457788999999999999999988886  567899999999998 699


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +|+-|+.|++||++.+..+..+. +            |...|+.+..+|      +|.++.+-+.|.++++||++-..  
T Consensus       191 sggIdn~ikvWd~r~~d~~~~ls-G------------h~DtIt~lsls~------~gs~llsnsMd~tvrvwd~rp~~--  249 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLS-G------------HADTITGLSLSR------YGSFLLSNSMDNTVRVWDVRPFA--  249 (338)
T ss_pred             eccccCceeeeccccCcceEEee-c------------ccCceeeEEecc------CCCccccccccceEEEEEecccC--
Confidence            99999999999999999998887 4            578999999999      79999999999999999998521  


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC----ccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT----AAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                                                        ...+++..+.+|.    .....++|+   |++..+.+|+.|..+++
T Consensus       250 ----------------------------------p~~R~v~if~g~~hnfeknlL~csws---p~~~~i~ags~dr~vyv  292 (338)
T KOG0265|consen  250 ----------------------------------PSQRCVKIFQGHIHNFEKNLLKCSWS---PNGTKITAGSADRFVYV  292 (338)
T ss_pred             ----------------------------------CCCceEEEeecchhhhhhhcceeecc---CCCCccccccccceEEE
Confidence                                              1113344555542    235567888   99999999999999999


Q ss_pred             EeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          320 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       320 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ||....         .++..+.+|.+.|+.++|+| ...+|.+++.|.+|++=++
T Consensus       293 wd~~~r---------~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  293 WDTTSR---------RILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             eecccc---------cEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeecc
Confidence            999997         77789999999999999999 7789999999999987443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-44  Score=278.29  Aligned_cols=295  Identities=13%  Similarity=0.154  Sum_probs=247.8

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      +-+..+.|+.|++.|+-+.|+++ |++|||++.|.+..+|++....   ..+++.+|..+|..+.|+||.++|++++.+.
T Consensus       213 p~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE  291 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence            34556778999999999999999 9999999999999999976543   4788899999999999999999999999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      .+.+||..++........-  +...+.+++|.||+..+++|+.|+++..||++ |..+..++......|.+++..+||+ 
T Consensus       292 ~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk-  367 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK-  367 (519)
T ss_pred             heeeccCCcchhhhhcccC--cCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc-
Confidence            9999999998765555442  45789999999999999999999999999985 5555666512235689999999999 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      .+++.+.|..|++|+..+......+..              ..+++++.++.      +++++++.-.+..+++||+...
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~lise--------------~~~its~~iS~------d~k~~LvnL~~qei~LWDl~e~  427 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLISE--------------EQPITSFSISK------DGKLALVNLQDQEIHLWDLEEN  427 (519)
T ss_pred             EEEEEecccceeeechhhhhhhccccc--------------cCceeEEEEcC------CCcEEEEEcccCeeEEeecchh
Confidence            577777999999999887665544442              37899999998      8999999999999999999964


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEE--EEEEeecCCCCcEEEEecCCCeEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS--CVAFSMFGERGKYLISGGNDKLVK  318 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~~~l~s~~~dg~i~  318 (375)
                                                              ..+..+.||...-.  .-+|-  +.+..++++|++|+.|+
T Consensus       428 ----------------------------------------~lv~kY~Ghkq~~fiIrSCFg--g~~~~fiaSGSED~kvy  465 (519)
T KOG0293|consen  428 ----------------------------------------KLVRKYFGHKQGHFIIRSCFG--GGNDKFIASGSEDSKVY  465 (519)
T ss_pred             ----------------------------------------hHHHHhhcccccceEEEeccC--CCCcceEEecCCCceEE
Confidence                                                    33446667755432  22333  14568999999999999


Q ss_pred             EEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ||+..++         +++..+.||...|++++|+|.+..++|+++.||+||||..
T Consensus       466 IWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  466 IWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             EEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            9999999         8888999999999999999999999999999999999975

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-43  Score=292.82  Aligned_cols=340  Identities=16%  Similarity=0.190  Sum_probs=278.1

Q ss_pred             CCCCCeeeec-CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC--eEEEEcCCC
Q 017194            4 AEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGK   80 (375)
Q Consensus         4 ~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~d~   80 (375)
                      +++.++.++. |++||.-++|+|. +..|++|+.|+.+++||+..+.+...+++|.+.|.++.|+|+-+  .|++|..|+
T Consensus        93 tgk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~  171 (775)
T KOG0319|consen   93 TGKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG  171 (775)
T ss_pred             cchHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence            5677888888 9999999999999 79999999999999999999999999999999999999999765  488999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee---------------------
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK---------------------  139 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------  139 (375)
                      .+++||+.+...  .+.....|.+.|++++|.+|+..+++++.|..+.+||+.+.+..+                     
T Consensus       172 ~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~  249 (775)
T KOG0319|consen  172 TVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK  249 (775)
T ss_pred             eEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence            999999986543  566777889999999999999989999999999999875321111                     


Q ss_pred             --------------------------------------------------------------------------------
Q 017194          140 --------------------------------------------------------------------------------  139 (375)
Q Consensus       140 --------------------------------------------------------------------------------  139 (375)
                                                                                                      
T Consensus       250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm  329 (775)
T KOG0319|consen  250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM  329 (775)
T ss_pred             ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence                                                                                            


Q ss_pred             ------------------------------eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCC
Q 017194          140 ------------------------------SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL  189 (375)
Q Consensus       140 ------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  189 (375)
                                                    .+. +|...|.++....+|. +|++|+.|.++++|.++.+....... . 
T Consensus       330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~-GH~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~-a-  405 (775)
T KOG0319|consen  330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIP-GHTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCV-A-  405 (775)
T ss_pred             eecCCccceEEEEeCCCceEEEecCCCceEEEe-CchhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhh-h-
Confidence                                          223 7888888888555665 89999999999999885443221111 0 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec--------ccccCCCCCCceeecc
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR--------SKSTTKPLKGSQSTSK  261 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~~~~s~  261 (375)
                             ....|...|.+++++..     ...+|++++.|+++++|++...+....        ....+...+.+++++|
T Consensus       406 -------~~~gH~~svgava~~~~-----~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~  473 (775)
T KOG0319|consen  406 -------QANGHTNSVGAVAGSKL-----GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP  473 (775)
T ss_pred             -------hhcccccccceeeeccc-----CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence                   00116788999999763     567899999999999999987222111        1233556788999999


Q ss_pred             cccceeeee---eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh
Q 017194          262 VNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI  338 (375)
Q Consensus       262 ~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  338 (375)
                      +.+.+++.+   ..-.+.-...+....+.+|...|.++.|+   |..+.++|+|.|++|+||.+.+.         .+++
T Consensus       474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~f---------SClk  541 (775)
T KOG0319|consen  474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTF---------SCLK  541 (775)
T ss_pred             CCceEEecccccceeeecccCceEEEEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccc---------eeee
Confidence            999999732   22223334678888999999999999999   88999999999999999999999         8899


Q ss_pred             hhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          339 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       339 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++.||...|..+.|.. +++.|+|++.||-+++|+++
T Consensus       542 T~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  542 TFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             eecCccceeEeeeeee-CCcEEEeccCCCcEEEEecc
Confidence            9999999999999998 89999999999999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.5e-43  Score=278.15  Aligned_cols=290  Identities=19%  Similarity=0.232  Sum_probs=252.5

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--c--eeeEee----------ecCccEEEEEEeCCCCeEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--D--VQLVTD----------VGNGPVTSLCFKSGNEDII   74 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~--~~~~~~----------~~~~~v~~l~~~~~~~~l~   74 (375)
                      +.+. |+.+|.+++|+|-....+++|+.|-+.++|++...  .  ....++          ..+..|++++|+.+|..||
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            3444 99999999999985559999999999999998741  1  111111          1246899999999999999


Q ss_pred             EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194           75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      +|+.||.+++|+..    ...+..+..|.++|.++.|+..|.+|++++.|+++.+||..+++..+.+. -|..+-..+.|
T Consensus       252 tG~~~G~~riw~~~----G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW  326 (524)
T KOG0273|consen  252 TGSEDGEARIWNKD----GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDW  326 (524)
T ss_pred             EeecCcEEEEEecC----chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEE
Confidence            99999999999987    35666777889999999999999999999999999999999999999998 88888788999


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                      -.+.  .|++++.|+.|+++.+....++.++. +            |...|.++.|.|      .+.+|++++.|++++|
T Consensus       327 ~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~-G------------H~g~V~alk~n~------tg~LLaS~SdD~Tlki  385 (524)
T KOG0273|consen  327 QSND--EFATSSTDGCIHVCKVGEDRPVKTFI-G------------HHGEVNALKWNP------TGSLLASCSDDGTLKI  385 (524)
T ss_pred             ecCc--eEeecCCCceEEEEEecCCCcceeee-c------------ccCceEEEEECC------CCceEEEecCCCeeEe
Confidence            8877  49999999999999999999998887 3            578999999999      7999999999999999


Q ss_pred             EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC------CCcEE
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE------RGKYL  308 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------~~~~l  308 (375)
                      |.....                                        .....+.+|...|..+.|+|.+|      .+..+
T Consensus       386 Ws~~~~----------------------------------------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l  425 (524)
T KOG0273|consen  386 WSMGQS----------------------------------------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML  425 (524)
T ss_pred             eecCCC----------------------------------------cchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence            998753                                        45568889999999999995322      34589


Q ss_pred             EEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          309 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       309 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++++.|++|++||+..+         .++..+..|..+|.+++|+| +|+|+|+|+.||.|.+|+.+
T Consensus       426 ~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  426 ASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             EEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecccc
Confidence            99999999999999999         66778899999999999999 99999999999999999863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.7e-42  Score=281.07  Aligned_cols=288  Identities=21%  Similarity=0.360  Sum_probs=252.8

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      ++++++|.++|++++|+|+ +++|++++.||.|++|++.+++....+..|...+..+.|+|+++.+++++.++.|++|++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            4678899999999999999 899999999999999999998888888899999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .+++   .+..+..|...+.++.|+++++++++++.++.+.+||+++++....+. .|...+.+++|+|++. ++++++.
T Consensus        81 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~  155 (289)
T cd00200          81 ETGE---CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGT-FVASSSQ  155 (289)
T ss_pred             Cccc---ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCC-EEEEEcC
Confidence            8653   344455667899999999998888888889999999999888888888 8999999999999976 6777777


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      ++.|++||+++++....+..             +...+.++.++|      +++.+++++.++.|++||+++.       
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~~~------~~~~l~~~~~~~~i~i~d~~~~-------  209 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTG-------------HTGEVNSVAFSP------DGEKLLSSSSDGTIKLWDLSTG-------  209 (289)
T ss_pred             CCcEEEEEccccccceeEec-------------CccccceEEECC------CcCEEEEecCCCcEEEEECCCC-------
Confidence            99999999998888877763             356899999999      7889999999999999999863       


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                                       +....+..|...+.++.|+   |++.++++++.||.|++||+.++  
T Consensus       210 ---------------------------------~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~i~~~~~~--  251 (289)
T cd00200         210 ---------------------------------KCLGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTG--  251 (289)
T ss_pred             ---------------------------------ceecchhhcCCceEEEEEc---CCCcEEEEEcCCCcEEEEEcCCc--
Confidence                                             2334555778899999999   88889999998999999999987  


Q ss_pred             eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                             .....+..|...+.+++|+| ++++|++++.||.|++|+
T Consensus       252 -------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 -------ECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -------eeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence                   44445568888999999999 889999999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-42  Score=274.05  Aligned_cols=284  Identities=18%  Similarity=0.233  Sum_probs=247.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      ..|++++|+.+ |..||+|+.||.++||+.. |..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++...  
T Consensus       236 kdVT~L~Wn~~-G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~--  311 (524)
T KOG0273|consen  236 KDVTSLDWNND-GTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK--  311 (524)
T ss_pred             CCcceEEecCC-CCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE--
Confidence            56999999999 9999999999999999965 7778899999999999999999999999999999999999876443  


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD  175 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd  175 (375)
                       +.+..|..+-..+.|-.+ ..+++++.|+.|+++.+....++.++. +|.++|.++.|.|.+. +|++++.|+++++|.
T Consensus       312 -q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  312 -QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGS-LLASCSDDGTLKIWS  387 (524)
T ss_pred             -EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCc-eEEEecCCCeeEeee
Confidence             334445666677888654 478889999999999999999999999 9999999999999998 899999999999999


Q ss_pred             CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc---ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM---LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      +........+..             |...|..+.|+|...   ....+..+++++.|++|++||+..+            
T Consensus       388 ~~~~~~~~~l~~-------------Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------------  442 (524)
T KOG0273|consen  388 MGQSNSVHDLQA-------------HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------------  442 (524)
T ss_pred             cCCCcchhhhhh-------------hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------------
Confidence            988877777764             467899999998632   2335678999999999999999975            


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecc
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI  332 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  332 (375)
                                                  .++..+..|..+|++++|+   |+|+|+|+|+.||.|.+|+.+++       
T Consensus       443 ----------------------------v~i~~f~kH~~pVysvafS---~~g~ylAsGs~dg~V~iws~~~~-------  484 (524)
T KOG0273|consen  443 ----------------------------VPIHTLMKHQEPVYSVAFS---PNGRYLASGSLDGCVHIWSTKTG-------  484 (524)
T ss_pred             ----------------------------ceeEeeccCCCceEEEEec---CCCcEEEecCCCCeeEeccccch-------
Confidence                                        5667899999999999999   99999999999999999999998       


Q ss_pred             hhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          333 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       333 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                        ++++.+.+ .+.|..++|+. +|++|..+-.|+.+++-|+
T Consensus       485 --~l~~s~~~-~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  485 --KLVKSYQG-TGGIFELCWNA-AGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             --heeEeecC-CCeEEEEEEcC-CCCEEEEEecCCCceEEEe
Confidence              55544443 45699999998 8899999999999999886

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.7e-42  Score=294.05  Aligned_cols=289  Identities=21%  Similarity=0.318  Sum_probs=251.2

Q ss_pred             eeecC-CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           10 RLRGH-KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        10 ~l~~h-~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      .+.+| ...|.|+.|+|+ |+.+++++.++.+++|+..+.+  ....+.+|...|..++|+|+++++++++.|++|++||
T Consensus       153 ~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd  231 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD  231 (456)
T ss_pred             eecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence            34444 788999999999 8899999999999999998777  7777889999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ++.  ....++.+.+|...|++++|+|+++++++|+.|++|++||+++++++..+. +|...|++++|++++. .|++++
T Consensus       232 ~~~--~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~-~l~s~s  307 (456)
T KOG0266|consen  232 LKD--DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGN-LLVSAS  307 (456)
T ss_pred             ccC--CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCC-EEEEcC
Confidence            943  235667778999999999999999999999999999999999999999999 9999999999999999 799999


Q ss_pred             cCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCC-ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          167 LDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       167 ~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      .|+.|++||+.++.  +...+...            ... .++++.|+|      ++.++++++.|+.+++||+...   
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~------------~~~~~~~~~~fsp------~~~~ll~~~~d~~~~~w~l~~~---  366 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGA------------ENSAPVTSVQFSP------NGKYLLSASLDRTLKLWDLRSG---  366 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCC------------CCCCceeEEEECC------CCcEEEEecCCCeEEEEEccCC---
Confidence            99999999999988  44554422            122 689999999      8999999999999999999975   


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE---EEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA---SCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                                                           .....+.+|...+   .+...+   +.++++++|+.|+.|++|
T Consensus       367 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~sg~~d~~v~~~  406 (456)
T KOG0266|consen  367 -------------------------------------KSVGTYTGHSNLVRCIFSPTLS---TGGKLIYSGSEDGSVYVW  406 (456)
T ss_pred             -------------------------------------cceeeecccCCcceeEeccccc---CCCCeEEEEeCCceEEEE
Confidence                                                 3334555555533   333334   799999999999999999


Q ss_pred             eCCCceeeeecchhhhhhhhccc-ccceeeeeecCCCCCcEEEee--CCCeEEEEec
Q 017194          321 DCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCD--TSKVVKVYSI  374 (375)
Q Consensus       321 d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~--~dg~v~iw~~  374 (375)
                      |+.+.         ..+..+.+| ...+..+.++| ..+++++++  .|+.+++|..
T Consensus       407 ~~~s~---------~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  407 DSSSG---------GILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             eCCcc---------chhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence            99997         788899999 89999999999 788999988  7999999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.7e-41  Score=268.43  Aligned_cols=349  Identities=17%  Similarity=0.180  Sum_probs=260.1

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCCCCeEEEEcCC----
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSG----   79 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----   79 (375)
                      .....+.+|..+++-..|+|. |.++|+|...|+|||||....+.  ..+++.-.++|..|+|++++++|++.+..    
T Consensus        50 ~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf  128 (603)
T KOG0318|consen   50 ASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF  128 (603)
T ss_pred             cceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence            345567889999999999999 89999999999999999865432  33455567888889998888888887754    


Q ss_pred             CeEEEEECCCCC--------------------------------------cccccccccCCCcceeEEEEcCCCCeEEEE
Q 017194           80 KEVKSFDVHMPA--------------------------------------SWRPLESYNYNKEEINQIVCNPKSSFLACA  121 (375)
Q Consensus        80 ~~i~iwd~~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  121 (375)
                      |.+.+||..+..                                      ..+.-..+..|..-|.++.|+|||.++++.
T Consensus       129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~  208 (603)
T KOG0318|consen  129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA  208 (603)
T ss_pred             eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence            477888875410                                      111112233578889999999999999999


Q ss_pred             eCCCcEEEEeCcCceeeeeEe--cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCC--------
Q 017194          122 DDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE--------  191 (375)
Q Consensus       122 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--------  191 (375)
                      +.||.+.+||=.+++.+..+.  .+|.+.|.+++|+||+. .+++++.|.++++||+.+.++++++..+..-        
T Consensus       209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l  287 (603)
T KOG0318|consen  209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL  287 (603)
T ss_pred             cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence            999999999999999888875  27999999999999999 7999999999999999998887777655321        


Q ss_pred             ----------------------CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc-
Q 017194          192 ----------------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-  248 (375)
Q Consensus       192 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  248 (375)
                                            ........-|...|+++..+|      ++++|++|+.||.|.-|+..++..-..... 
T Consensus       288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~  361 (603)
T KOG0318|consen  288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKG  361 (603)
T ss_pred             EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC------CCCEEEeeccCceEEEEecCCcccccccccc
Confidence                                  000112223677899999999      799999999999999999986543211000 


Q ss_pred             -----------------------------------------cCCCCCCceeeccc-------------------------
Q 017194          249 -----------------------------------------TTKPLKGSQSTSKV-------------------------  262 (375)
Q Consensus       249 -----------------------------------------~~~~~~~~~~~s~~-------------------------  262 (375)
                                                               ....++..++..++                         
T Consensus       362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~  441 (603)
T KOG0318|consen  362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP  441 (603)
T ss_pred             ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence                                                     00011122333333                         


Q ss_pred             -------------ccceeeee------eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          263 -------------NIRDAEME------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       263 -------------g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                   ++.++..|      .+... +........+..|.++|+.+++|   ||+.|||+|...+.+.+||+.
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~-g~~l~ee~~~~~h~a~iT~vayS---pd~~yla~~Da~rkvv~yd~~  517 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS-GDELKEEAKLLEHRAAITDVAYS---PDGAYLAAGDASRKVVLYDVA  517 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEec-CCcccceeeeecccCCceEEEEC---CCCcEEEEeccCCcEEEEEcc
Confidence                         33333211      00000 11112233455789999999999   999999999999999999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +.+        .......-|+..|.+++|+| +.+++|+|+-|-.|.||+++
T Consensus       518 s~~--------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  518 SRE--------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             cCc--------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence            974        22234445999999999999 88999999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-41  Score=283.04  Aligned_cols=333  Identities=17%  Similarity=0.206  Sum_probs=275.0

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      .+++.||.+.|.++.|+-| .++|++|+.|.+++||.++..+.  ...+.+|...|.++-|..+...+++.+.||.+.+|
T Consensus       138 ~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W  216 (893)
T KOG0291|consen  138 HRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW  216 (893)
T ss_pred             eeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence            4577899999999999998 89999999999999999987665  66778999999999999999999999999999999


Q ss_pred             ECCCC-----------------------Cc------cccccc--ccC---------------------------------
Q 017194           86 DVHMP-----------------------AS------WRPLES--YNY---------------------------------  101 (375)
Q Consensus        86 d~~~~-----------------------~~------~~~~~~--~~~---------------------------------  101 (375)
                      .....                       +.      +...+.  +..                                 
T Consensus       217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~  296 (893)
T KOG0291|consen  217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD  296 (893)
T ss_pred             EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence            87610                       00      000000  000                                 


Q ss_pred             ---------CCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194          102 ---------NKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus       102 ---------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                               ...+|..++|+..|.+||.|+. -|.+.||+..+..-+...+ +|...+++++++|||. ++++|++||+|
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq-~iaTG~eDgKV  374 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQ-LIATGAEDGKV  374 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCc-EEEeccCCCcE
Confidence                     1234555666666677776653 3677777777766666667 8999999999999999 89999999999


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      ++||..++-++.++.-             |...|+.+.|+.      .++.+++++-||+|+.||+...+.-..+..+..
T Consensus       375 KvWn~~SgfC~vTFte-------------Hts~Vt~v~f~~------~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTE-------------HTSGVTAVQFTA------RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             EEEeccCceEEEEecc-------------CCCceEEEEEEe------cCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence            9999999999999974             578999999998      799999999999999999998887777777777


Q ss_pred             CCCCceeecccccceeeee----eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          252 PLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                      ....+++..|.|..+....    ..-.+..++.+++..+.||.++|.+++|+   |++..|++++.|.+|++||+-... 
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~---~~~~~LaS~SWDkTVRiW~if~s~-  511 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS---PDGSLLASGSWDKTVRIWDIFSSS-  511 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc---cccCeEEeccccceEEEEEeeccC-
Confidence            7888889999998876522    22345567778889999999999999999   999999999999999999997762 


Q ss_pred             eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                              -......+...+..++|.| +|+-|+++..||.|.+||.+
T Consensus       512 --------~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  512 --------GTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             --------ceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhh
Confidence                    2234456778899999999 99999999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.8e-43  Score=268.97  Aligned_cols=278  Identities=18%  Similarity=0.268  Sum_probs=242.1

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW   93 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   93 (375)
                      ....|+|+.+.   .+.+++|..|++|+|||.++..+...+.+|++.|.|+.|.  .+.+++|+.|.+|++||++++   
T Consensus       196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg---  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG---  267 (499)
T ss_pred             cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---
Confidence            35679999985   4689999999999999999999999999999999999996  468999999999999999986   


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce---eeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      ++++.+-+|...|..+.|+.  .++++++.|.++.+||+....   +.+.+. +|...|+.+.|+..   ++++++.|.+
T Consensus       268 e~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd~k---yIVsASgDRT  341 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFDDK---YIVSASGDRT  341 (499)
T ss_pred             chhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccccc---eEEEecCCce
Confidence            45566667899999999974  499999999999999998653   345566 99999999999754   7999999999


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT  250 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  250 (375)
                      |++|++.+++.+.++..             |...|-++.+        .++++++|+.|.+|++||+..+          
T Consensus       342 ikvW~~st~efvRtl~g-------------HkRGIAClQY--------r~rlvVSGSSDntIRlwdi~~G----------  390 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLNG-------------HKRGIACLQY--------RDRLVVSGSSDNTIRLWDIECG----------  390 (499)
T ss_pred             EEEEeccceeeehhhhc-------------ccccceehhc--------cCeEEEecCCCceEEEEecccc----------
Confidence            99999999999998873             4667778777        6999999999999999999975          


Q ss_pred             CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee
Q 017194          251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT  330 (375)
Q Consensus       251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  330 (375)
                                                    .++..+.||+.-|.++.|.     .+.+++|+.||+|++||+..+.....
T Consensus       391 ------------------------------~cLRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  391 ------------------------------ACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             ------------------------------HHHHHHhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcc
Confidence                                          5667899999999999985     57899999999999999998865444


Q ss_pred             cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          331 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ....-++..+..|++.|..+.|   |...+++++.|.+|.|||+
T Consensus       436 ~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  436 PASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWDF  476 (499)
T ss_pred             cccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEEc
Confidence            4444577888899999999999   6678999999999999997

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.3e-41  Score=245.35  Aligned_cols=280  Identities=16%  Similarity=0.223  Sum_probs=236.6

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      .++.+.++++..++.|+.+...|+ ++.||+|+.. .|++||++++.+  +.++.+|+..|+++.|..+|+.+++|+.||
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg  105 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG  105 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCC-cchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence            367888899988889999999999 8889988864 799999998764  889999999999999999999999999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      +++|||++.....+   .+ .|..+|+++..+|+...|++|..+|.|++||+....+...+.......|.++...|+|. 
T Consensus       106 t~kIWdlR~~~~qR---~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-  180 (311)
T KOG0315|consen  106 TVKIWDLRSLSCQR---NY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-  180 (311)
T ss_pred             eEEEEeccCcccch---hc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-
Confidence            99999999633322   22 24689999999999999999999999999999987666555435567899999999999 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      +++.+...|++++|++-.......+..-       .....|...+....++|      ++++|++++.|.+++||+..+.
T Consensus       181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~-------~k~~ah~~~il~C~lSP------d~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  181 MLAAANNKGNCYVWRLLNHQTASELEPV-------HKFQAHNGHILRCLLSP------DVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             EEEEecCCccEEEEEccCCCccccceEh-------hheecccceEEEEEECC------CCcEEEeecCCceEEEEecCCc
Confidence            7999999999999999775433332211       11223578899999999      8999999999999999999863


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                                                             ++....+.+|+..++..+||   .||+||++|+.|+.+++|
T Consensus       248 ---------------------------------------~kle~~l~gh~rWvWdc~FS---~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  248 ---------------------------------------FKLELVLTGHQRWVWDCAFS---ADGEYLVTASSDHTARLW  285 (311)
T ss_pred             ---------------------------------------eeeEEEeecCCceEEeeeec---cCccEEEecCCCCceeec
Confidence                                                   35556888999999999999   999999999999999999


Q ss_pred             eCCCceeeeecchhhhhhhhcccccceeeeeec
Q 017194          321 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  353 (375)
Q Consensus       321 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  353 (375)
                      ++..+         +.++...+|.....+++..
T Consensus       286 ~~~~~---------k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  286 DLSAG---------KEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ccccC---------ceeeecCCcccccEEEEee
Confidence            99999         6677888888888777653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.7e-41  Score=250.68  Aligned_cols=251  Identities=17%  Similarity=0.253  Sum_probs=223.5

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC------ceeeEeeecCccEEEEEEeCCCCeEEEEc
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNEDIIYVS   77 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~   77 (375)
                      |..+++.+.-....|..++|+|. ++++|+|+.|+...||++.+.      ...+.+.+|++.+.++.|.+|+ +|++++
T Consensus        86 TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~S  163 (343)
T KOG0286|consen   86 TTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGS  163 (343)
T ss_pred             cccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecC
Confidence            44455666666788999999999 999999999999999999865      2356688999999999998855 699999


Q ss_pred             CCCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee
Q 017194           78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  156 (375)
                      .|.+..+||++++   +.+..+.+|.+.|.++.++| +++.+++|+-|+..++||++.+..++.|. +|+..|++++|.|
T Consensus       164 GD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP  239 (343)
T KOG0286|consen  164 GDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFP  239 (343)
T ss_pred             CCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEcc
Confidence            9999999999976   55667779999999999999 99999999999999999999999999999 9999999999999


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                      +|. -|++|+.|++.++||++..+.+..+....           ....|++++|+.      .|++|++|..|..+.+||
T Consensus       240 ~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~-----------~~~gitSv~FS~------SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  240 SGD-AFATGSDDATCRLYDLRADQELAVYSHDS-----------IICGITSVAFSK------SGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             CCC-eeeecCCCceeEEEeecCCcEEeeeccCc-----------ccCCceeEEEcc------cccEEEeeecCCceeEee
Confidence            998 79999999999999999998888876321           236799999998      799999999999999999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      .-.+                                        +.+..+.+|...|.++..+   |||.-+++|+.|..
T Consensus       302 tlk~----------------------------------------e~vg~L~GHeNRvScl~~s---~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  302 TLKG----------------------------------------ERVGVLAGHENRVSCLGVS---PDGMAVATGSWDST  338 (343)
T ss_pred             cccc----------------------------------------ceEEEeeccCCeeEEEEEC---CCCcEEEecchhHh
Confidence            8764                                        3445788999999999999   99999999999999


Q ss_pred             EEEEe
Q 017194          317 VKVWD  321 (375)
Q Consensus       317 i~iwd  321 (375)
                      ++||.
T Consensus       339 lriW~  343 (343)
T KOG0286|consen  339 LRIWA  343 (343)
T ss_pred             eeecC
Confidence            99994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.4e-42  Score=287.45  Aligned_cols=250  Identities=16%  Similarity=0.260  Sum_probs=224.7

Q ss_pred             eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC--------c--------------------ccccccccCCC
Q 017194           52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA--------S--------------------WRPLESYNYNK  103 (375)
Q Consensus        52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~--------------------~~~~~~~~~~~  103 (375)
                      .++......++|..|++++..||.|..|..|++|.+...+        .                    ......+.+|.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            3344446789999999999999999999999999987311        0                    01122356899


Q ss_pred             cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194          104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK  183 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  183 (375)
                      ++|..+.|+|+.++|+++++|+++++|.+.+...+-.++ +|..+|+.+.|+|.|- +||+++.|++.++|.....++++
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCce-EEEecCCCceeeeeecccCCchh
Confidence            999999999999999999999999999999999999999 9999999999999986 79999999999999999988888


Q ss_pred             EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccc
Q 017194          184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN  263 (375)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g  263 (375)
                      .+. +            |...|.|+.|+|      +..++++|+.|.++++||..++                       
T Consensus       530 ifa-g------------hlsDV~cv~FHP------Ns~Y~aTGSsD~tVRlWDv~~G-----------------------  567 (707)
T KOG0263|consen  530 IFA-G------------HLSDVDCVSFHP------NSNYVATGSSDRTVRLWDVSTG-----------------------  567 (707)
T ss_pred             hhc-c------------cccccceEEECC------cccccccCCCCceEEEEEcCCC-----------------------
Confidence            776 3            578899999999      8999999999999999999986                       


Q ss_pred             cceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc
Q 017194          264 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  343 (375)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  343 (375)
                                       ..++.+.||.++|.+++||   |+|++|++|+.||.|.+||+.++         .++..+.+|
T Consensus       568 -----------------~~VRiF~GH~~~V~al~~S---p~Gr~LaSg~ed~~I~iWDl~~~---------~~v~~l~~H  618 (707)
T KOG0263|consen  568 -----------------NSVRIFTGHKGPVTALAFS---PCGRYLASGDEDGLIKIWDLANG---------SLVKQLKGH  618 (707)
T ss_pred             -----------------cEEEEecCCCCceEEEEEc---CCCceEeecccCCcEEEEEcCCC---------cchhhhhcc
Confidence                             4456789999999999999   99999999999999999999999         888999999


Q ss_pred             ccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          344 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       344 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++.|.++.|+. +|..||+|+.|.+|++||+.
T Consensus       619 t~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  619 TGTIYSLSFSR-DGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             cCceeEEEEec-CCCEEEecCCCCeEEEEEch
Confidence            99999999999 99999999999999999973

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-41  Score=244.49  Aligned_cols=287  Identities=16%  Similarity=0.190  Sum_probs=244.5

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .++++.|..|+++|..+.|+-+ |++.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..+++++.|..+.+
T Consensus         7 tkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             chhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence            3467788999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc--eeeeeEecCcccceeEEEEeeCCCcEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH--CLYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      ||+.+++   .+..+.+|.+.|+.++|+.+...+++|+.|..+++||.++.  ++++.+. .....|.++.....   .+
T Consensus        86 wDV~TGk---v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~h---eI  158 (307)
T KOG0316|consen   86 WDVNTGK---VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAEH---EI  158 (307)
T ss_pred             EEcccCe---eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEeccc---EE
Confidence            9999875   45566778999999999999999999999999999999854  6788888 77889999988765   69


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ++|+.||+++.||++.|+......               ..+|+++.|++      +++..++++.|+++++.|-.++  
T Consensus       159 vaGS~DGtvRtydiR~G~l~sDy~---------------g~pit~vs~s~------d~nc~La~~l~stlrLlDk~tG--  215 (307)
T KOG0316|consen  159 VAGSVDGTVRTYDIRKGTLSSDYF---------------GHPITSVSFSK------DGNCSLASSLDSTLRLLDKETG--  215 (307)
T ss_pred             EeeccCCcEEEEEeecceeehhhc---------------CCcceeEEecC------CCCEEEEeeccceeeecccchh--
Confidence            999999999999999988765543               36899999999      8999999999999999999986  


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                            +++..+.+|...-+.+..+ +......+++|++||.|++||+
T Consensus       216 --------------------------------------klL~sYkGhkn~eykldc~-l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  216 --------------------------------------KLLKSYKGHKNMEYKLDCC-LNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             --------------------------------------HHHHHhcccccceeeeeee-ecccceeEEeccCCceEEEEEe
Confidence                                                  4556778887765555432 1156678999999999999999


Q ss_pred             CCceeeeecchhhhhhhhcccccc-eeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          323 SRFQGVQTSINNDLLIKNINLNKK-VNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      ...         .++..+..+... +.++.++|.. .-|+++.. +.+.+|
T Consensus       257 vd~---------~~~sk~~~~~~v~v~dl~~hp~~-~~f~~A~~-~~~~~~  296 (307)
T KOG0316|consen  257 VDE---------TQISKLSVVSTVIVTDLSCHPTM-DDFITATG-HGDLFW  296 (307)
T ss_pred             ccc---------eeeeeeccCCceeEEeeecccCc-cceeEecC-Cceece
Confidence            998         566666777776 8999999944 44555543 345555

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-41  Score=276.09  Aligned_cols=291  Identities=16%  Similarity=0.261  Sum_probs=261.9

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ...+++..|.+.|.++.|+|. ..+++++-.+|.|.|||.++...++.++....+|.+..|-+..+.+++|+.|..|+||
T Consensus         4 ~~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             hhhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence            344567779999999999999 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      +..+.   +.+..+..|..-|.+++.+|...+++++++|-+|++||.+.+ .+.++|. +|...|.+++|+|.+++.|++
T Consensus        83 nynt~---ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS  158 (794)
T KOG0276|consen   83 NYNTG---EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFAS  158 (794)
T ss_pred             ecccc---eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceee
Confidence            99974   667778889999999999999999999999999999999865 6678888 999999999999998889999


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ++-|++|++|.+.+..+..+++ +            |...|+++.+-+    .++..+|++|+.|..|++||..+.    
T Consensus       159 ~sLDrTVKVWslgs~~~nfTl~-g------------HekGVN~Vdyy~----~gdkpylIsgaDD~tiKvWDyQtk----  217 (794)
T KOG0276|consen  159 ASLDRTVKVWSLGSPHPNFTLE-G------------HEKGVNCVDYYT----GGDKPYLISGADDLTIKVWDYQTK----  217 (794)
T ss_pred             eeccccEEEEEcCCCCCceeee-c------------cccCcceEEecc----CCCcceEEecCCCceEEEeecchH----
Confidence            9999999999999999999998 4            688999999988    345569999999999999999974    


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                                          .|+.++.+|...|..+.|+   |.-.++++|++||+++||+..+
T Consensus       218 ------------------------------------~CV~TLeGHt~Nvs~v~fh---p~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  218 ------------------------------------SCVQTLEGHTNNVSFVFFH---PELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             ------------------------------------HHHHHhhcccccceEEEec---CCCcEEEEecCCccEEEecCcc
Confidence                                                6788999999999999999   8888999999999999999999


Q ss_pred             ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194          325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  371 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i  371 (375)
                      .         ++...+.-.-+++++++..+ .+..++.|...|.|.+
T Consensus       259 y---------~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  259 Y---------KLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV  295 (794)
T ss_pred             e---------ehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence            8         56666666778999999888 5556888877776643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-41  Score=284.82  Aligned_cols=276  Identities=22%  Similarity=0.317  Sum_probs=237.2

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------------------------------eeeEeeecCc
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------------------------------VQLVTDVGNG   59 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------------------------------~~~~~~~~~~   59 (375)
                      +.--...++|..|++| +.+||.|..|..|++|.+...+                               ...++-+|.+
T Consensus       374 ~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G  452 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG  452 (707)
T ss_pred             EEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence            3333467999999999 8899999999999999987311                               1345678999


Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK  139 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  139 (375)
                      +|..+.|+|+.++|++++.|+++++|.+.+.   ..+-.+.+|..+|..+.|+|.|-++|+++.|++.++|.....++++
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence            9999999999999999999999999999964   5556677899999999999999999999999999999999999999


Q ss_pred             eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC
Q 017194          140 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT  219 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  219 (375)
                      .+. +|.+.|.|+.|+|+.. ++++|+.|.+|++||..+|..++.+. +            |..+|.+++|+|      +
T Consensus       530 ifa-ghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~-G------------H~~~V~al~~Sp------~  588 (707)
T KOG0263|consen  530 IFA-GHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFT-G------------HKGPVTALAFSP------C  588 (707)
T ss_pred             hhc-ccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEec-C------------CCCceEEEEEcC------C
Confidence            999 9999999999999998 69999999999999999999998886 4            689999999999      7


Q ss_pred             CCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194          220 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  299 (375)
Q Consensus       220 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  299 (375)
                      |++|++|+.||.|.+||+.++                                        ..+..+.+|.+.|.++.||
T Consensus       589 Gr~LaSg~ed~~I~iWDl~~~----------------------------------------~~v~~l~~Ht~ti~SlsFS  628 (707)
T KOG0263|consen  589 GRYLASGDEDGLIKIWDLANG----------------------------------------SLVKQLKGHTGTIYSLSFS  628 (707)
T ss_pred             CceEeecccCCcEEEEEcCCC----------------------------------------cchhhhhcccCceeEEEEe
Confidence            999999999999999999975                                        4566888999999999999


Q ss_pred             ecCCCCcEEEEecCCCeEEEEeCCCceeee---------------ecchhhhhhhhcccccceeeeeecC
Q 017194          300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------TSINNDLLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~~~  354 (375)
                         .+|..||+|+.|++|++||+.......               ......++..+..-..+|..+.|..
T Consensus       629 ---~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr  695 (707)
T KOG0263|consen  629 ---RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTR  695 (707)
T ss_pred             ---cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEec
Confidence               999999999999999999987653320               0011123334444556788888866

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1e-40  Score=257.32  Aligned_cols=284  Identities=17%  Similarity=0.220  Sum_probs=243.9

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCC---CeEEEEcCCCeEEEEECCCC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN---EDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~~d~~i~iwd~~~~   90 (375)
                      |.+.|.++...   ++.+++|+.||.+++||.. |+....+.+|.++|.+++|.-..   ..+++++.|.++++|.++.+
T Consensus       104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             chhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            88999988876   4699999999999999965 88899999999999999985433   35999999999999998865


Q ss_pred             Cc-ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc-------------------------CceeeeeEecC
Q 017194           91 AS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-------------------------QHCLYKSLRAG  144 (375)
Q Consensus        91 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-------------------------~~~~~~~~~~~  144 (375)
                      .. ...+....+|...|.++...+++..+++|+.|.+|.+|+..                         ++.++..+. +
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-G  258 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-G  258 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-c
Confidence            43 34455566999999999999999999999999999999932                         122455677 9


Q ss_pred             cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194          145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       145 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      |..+|.++.|++.+  .+.+++.|.+|+.||+.++.....+..              +..++++..+|      ..++|+
T Consensus       259 Ht~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~~--------------~ksl~~i~~~~------~~~Ll~  316 (423)
T KOG0313|consen  259 HTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLTT--------------NKSLNCISYSP------LSKLLA  316 (423)
T ss_pred             cccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeeec--------------CcceeEeeccc------ccceee
Confidence            99999999999954  799999999999999999999888874              47899999999      799999


Q ss_pred             EEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCC
Q 017194          225 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  304 (375)
Q Consensus       225 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  304 (375)
                      +|+.|..|++||.+++.                                     .-....++.+|+..|.++.|+|  .+
T Consensus       317 ~gssdr~irl~DPR~~~-------------------------------------gs~v~~s~~gH~nwVssvkwsp--~~  357 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGD-------------------------------------GSVVSQSLIGHKNWVSSVKWSP--TN  357 (423)
T ss_pred             ecCCCCceeecCCCCCC-------------------------------------CceeEEeeecchhhhhheecCC--CC
Confidence            99999999999999742                                     1234568899999999999995  45


Q ss_pred             CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          305 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       305 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      ...|++|+.|+++++||+++.+        ..+..+.+|...|.++.|+  ++.+|++|+.|.+|+|+.
T Consensus       358 ~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  358 EFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             ceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEecc--CCceEEeccCcceEEEec
Confidence            5678899999999999999984        3677889999999999996  567999999999999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.1e-41  Score=278.51  Aligned_cols=295  Identities=17%  Similarity=0.200  Sum_probs=259.9

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +.+..+.+-|..+.|..|.|-....++||.++..+.+++|+..+..+. .+.+|++.|.++....+|.+|++++.|++++
T Consensus       312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi  390 (775)
T KOG0319|consen  312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI  390 (775)
T ss_pred             ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence            455667788999999999986544789999999999999998877764 8899999999999667788999999999999


Q ss_pred             EEECCCCC-cccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCcee---ee------eEecCcccceeEE
Q 017194           84 SFDVHMPA-SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCL---YK------SLRAGHSSICSSV  152 (375)
Q Consensus        84 iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~---~~------~~~~~~~~~v~~~  152 (375)
                      +|.++.+. ....+....+|...|.+++++..+ .+|++++.|+++++|++...+.   ..      ... .|...|+++
T Consensus       391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~-aHdKdIN~V  469 (775)
T KOG0319|consen  391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER-AHDKDINCV  469 (775)
T ss_pred             EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH-hhcccccce
Confidence            99985432 345667778999999999997754 6799999999999999976221   11      223 799999999


Q ss_pred             EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194          153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  232 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i  232 (375)
                      +++|+.+ ++++|+.|.+.++|++........+. +            |...+.++.|+|      ..+.+++++.|++|
T Consensus       470 aia~ndk-LiAT~SqDktaKiW~le~~~l~~vLs-G------------H~RGvw~V~Fs~------~dq~laT~SgD~Tv  529 (775)
T KOG0319|consen  470 AIAPNDK-LIATGSQDKTAKIWDLEQLRLLGVLS-G------------HTRGVWCVSFSK------NDQLLATCSGDKTV  529 (775)
T ss_pred             EecCCCc-eEEecccccceeeecccCceEEEEee-C------------CccceEEEEecc------ccceeEeccCCceE
Confidence            9999998 89999999999999999888888887 4            678999999999      79999999999999


Q ss_pred             EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec
Q 017194          233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG  312 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~  312 (375)
                      +||.+.+.                                        .++.++.||...|..+.|-   .+|+.|++++
T Consensus       530 KIW~is~f----------------------------------------SClkT~eGH~~aVlra~F~---~~~~qliS~~  566 (775)
T KOG0319|consen  530 KIWSISTF----------------------------------------SCLKTFEGHTSAVLRASFI---RNGKQLISAG  566 (775)
T ss_pred             EEEEeccc----------------------------------------eeeeeecCccceeEeeeee---eCCcEEEecc
Confidence            99999974                                        7888999999999999999   8999999999


Q ss_pred             CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          313 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       313 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      .||.|++|++++.         +++..+..|.+.|++++.++ ...+++||+.||.|.+|.
T Consensus       567 adGliKlWnikt~---------eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  567 ADGLIKLWNIKTN---------ECEMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             CCCcEEEEeccch---------hhhhhhhhccceeEEEeecC-ccceeEecCCCeEEEEee
Confidence            9999999999999         89999999999999999999 778999999999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.4e-40  Score=239.09  Aligned_cols=285  Identities=16%  Similarity=0.193  Sum_probs=240.4

Q ss_pred             eEEEEecCCCCEEEEeC-------CCCcEEEEecccCceeeEeee--cCccEEEEEEeCCC-CeEEEEcCCCeEEEEECC
Q 017194           19 TCCIASRDRPGFVASSG-------EDGCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~~~~--~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~   88 (375)
                      +++.|+|--.++||.+.       ..|.+.|.++...+-+..+..  -.+.+..++|+++. +.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            67899997555655542       368899999875544444432  36889999999864 568888999999999954


Q ss_pred             CCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .  ...++..++.|..+|.++.|++. .+.+++++.|++|++|+...++.+.++. +|...|...+|+|..+.++++++.
T Consensus        92 ~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sg  168 (311)
T KOG0277|consen   92 M--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASG  168 (311)
T ss_pred             C--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccC
Confidence            3  45688899999999999999994 5567888999999999999999999999 999999999999998889999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      |+.+++||++.......++.             |...+.+..|+..     +...|++|+.|+.|+.||++..+      
T Consensus       169 d~~l~lwdvr~~gk~~~i~a-------------h~~Eil~cdw~ky-----~~~vl~Tg~vd~~vr~wDir~~r------  224 (311)
T KOG0277|consen  169 DGTLRLWDVRSPGKFMSIEA-------------HNSEILCCDWSKY-----NHNVLATGGVDNLVRGWDIRNLR------  224 (311)
T ss_pred             CceEEEEEecCCCceeEEEe-------------ccceeEeeccccc-----CCcEEEecCCCceEEEEehhhcc------
Confidence            99999999987655555664             3578999999875     88999999999999999999743      


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                                       ..+.++.+|.-.|+.++|||  ....+||+++.|-+++|||..... 
T Consensus       225 ---------------------------------~pl~eL~gh~~AVRkvk~Sp--h~~~lLaSasYDmT~riw~~~~~d-  268 (311)
T KOG0277|consen  225 ---------------------------------TPLFELNGHGLAVRKVKFSP--HHASLLASASYDMTVRIWDPERQD-  268 (311)
T ss_pred             ---------------------------------ccceeecCCceEEEEEecCc--chhhHhhhccccceEEecccccch-
Confidence                                             34568899999999999997  345699999999999999998764 


Q ss_pred             eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                             ..+.....|+.-+..+.|++.++.++|+++-|+.++||+
T Consensus       269 -------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  269 -------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             -------hhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence                   566677789999999999998999999999999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.4e-38  Score=291.99  Aligned_cols=298  Identities=18%  Similarity=0.231  Sum_probs=236.7

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--------eeeEeeecCccEEEEEEeC-CCCeEEEEcCCCe
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKE   81 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~~   81 (375)
                      +..|.+.|.+++|+|+ +++||+|+.|+.|+||+..+..        ....+. +...+.+++|++ ++.+|++++.|+.
T Consensus       479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            4569999999999998 8999999999999999975421        122233 356899999987 4778999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee-CCC
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKP  159 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  159 (375)
                      |++||+.+++   .+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+. .+ ..+.++.|.+ ++.
T Consensus       557 v~lWd~~~~~---~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~-~~v~~v~~~~~~g~  631 (793)
T PLN00181        557 VQVWDVARSQ---LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TK-ANICCVQFPSESGR  631 (793)
T ss_pred             EEEEECCCCe---EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cC-CCeEEEEEeCCCCC
Confidence            9999998653   4455677899999999997 78899999999999999999998888887 44 6899999965 455


Q ss_pred             cEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                       .|++|+.||.|++||+++.+ .+..+. +            |...|.++.|.+       +..+++++.|+.|++||++
T Consensus       632 -~latgs~dg~I~iwD~~~~~~~~~~~~-~------------h~~~V~~v~f~~-------~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        632 -SLAFGSADHKVYYYDLRNPKLPLCTMI-G------------HSKTVSYVRFVD-------SSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             -EEEEEeCCCeEEEEECCCCCccceEec-C------------CCCCEEEEEEeC-------CCEEEEEECCCEEEEEeCC
Confidence             89999999999999998765 344443 3            567899999974       7899999999999999997


Q ss_pred             CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEE
Q 017194          239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK  318 (375)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~  318 (375)
                      ....                                  ......+..+.+|...+..++|+   +++.+|++|+.|+.|+
T Consensus       691 ~~~~----------------------------------~~~~~~l~~~~gh~~~i~~v~~s---~~~~~lasgs~D~~v~  733 (793)
T PLN00181        691 MSIS----------------------------------GINETPLHSFMGHTNVKNFVGLS---VSDGYIATGSETNEVF  733 (793)
T ss_pred             CCcc----------------------------------ccCCcceEEEcCCCCCeeEEEEc---CCCCEEEEEeCCCEEE
Confidence            5310                                  00113455788999999999999   8999999999999999


Q ss_pred             EEeCCCceeeeec--chhhhh--hhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          319 VWDCSRFQGVQTS--INNDLL--IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       319 iwd~~~~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +|+..........  .....+  .....|...|.+++|+| ++..|++|+.||.|+||++
T Consensus       734 iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        734 VYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence            9998765322100  000000  11234667899999999 9999999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.3e-39  Score=267.86  Aligned_cols=327  Identities=17%  Similarity=0.182  Sum_probs=252.1

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ..+-++.||+..|+++.|... |..||||+.|+.|.+||+-...-+..+.+|++.|+..-|..+.+.+++.+.|+.|++|
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~W  176 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFW  176 (888)
T ss_pred             ceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEE
Confidence            556788999999999999999 8999999999999999998888899999999999999998878899999999999999


Q ss_pred             ECCCCCcccccccccC----------------------------------------------------------------
Q 017194           86 DVHMPASWRPLESYNY----------------------------------------------------------------  101 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~----------------------------------------------------------------  101 (375)
                      |+++..   .+.+.-.                                                                
T Consensus       177 dL~tqh---Cf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d  253 (888)
T KOG0306|consen  177 DLETQH---CFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD  253 (888)
T ss_pred             ecccce---eeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence            998732   2222222                                                                


Q ss_pred             --------------------------------------------------------------------------------
Q 017194          102 --------------------------------------------------------------------------------  101 (375)
Q Consensus       102 --------------------------------------------------------------------------------  101 (375)
                                                                                                      
T Consensus       254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~  333 (888)
T KOG0306|consen  254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG  333 (888)
T ss_pred             CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence                                                                                            


Q ss_pred             --------------------------------------CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec
Q 017194          102 --------------------------------------NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA  143 (375)
Q Consensus       102 --------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (375)
                                                            |...|.+++++.+...+++|+ .+.+++|+..+.++++++. 
T Consensus       334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~-  411 (888)
T KOG0306|consen  334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT-  411 (888)
T ss_pred             cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec-
Confidence                                                  334445555555544444442 3456666666566665555 


Q ss_pred             CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194          144 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                        ...+.+..|.|.+. ++++|...|.+.+||+.+...+.+++.             |.+.+.+++.+|      +++.+
T Consensus       412 --~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~A-------------HdgaIWsi~~~p------D~~g~  469 (888)
T KOG0306|consen  412 --CGYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRA-------------HDGAIWSISLSP------DNKGF  469 (888)
T ss_pred             --cccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhc-------------cccceeeeeecC------CCCce
Confidence              22555666666655 466666666666666666655555552             688999999999      89999


Q ss_pred             EEEecCCcEEEEeCCCcce------e-ec----ccccCCCCCCceeecccccceeeee---eeecCCcceeEeeeeecCC
Q 017194          224 VVAKGDGVVDVINIESELN------I-SR----SKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGH  289 (375)
Q Consensus       224 ~~~~~dg~i~i~d~~~~~~------~-~~----~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~  289 (375)
                      ++|+.|.+|++||..-...      . ..    ........+.++++||||++++..-   ..-..-...++....+.||
T Consensus       470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH  549 (888)
T KOG0306|consen  470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH  549 (888)
T ss_pred             EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence            9999999999999763211      0 00    1122345677889999999998521   1112223456777789999


Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeE
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  369 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v  369 (375)
                      .-||.++.+|   ||+++++|||.|..|+||-++-+         .+.+.+.+|.+.|.++.|.| ....+.++|.|+.|
T Consensus       550 kLPV~smDIS---~DSklivTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kv  616 (888)
T KOG0306|consen  550 KLPVLSMDIS---PDSKLIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKV  616 (888)
T ss_pred             ccceeEEecc---CCcCeEEeccCCCceEEeccccc---------hhhhhhhcccCceeEEEEcc-cceeEEEecCcceE
Confidence            9999999999   99999999999999999999999         88999999999999999999 78899999999999


Q ss_pred             EEEe
Q 017194          370 KVYS  373 (375)
Q Consensus       370 ~iw~  373 (375)
                      +-||
T Consensus       617 KqWD  620 (888)
T KOG0306|consen  617 KQWD  620 (888)
T ss_pred             Eeec
Confidence            9997

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.3e-40  Score=250.28  Aligned_cols=286  Identities=16%  Similarity=0.201  Sum_probs=249.6

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee--------ecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--------VGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      |.++-+-|..|+|| +++|++|+.||.|.+||..+|+..+.++        -+..+|.|+.|+.|...+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            45677889999999 9999999999999999999998755443        36789999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      |.++++.+++.+..  .|...|+++.|+.|+..+++++.|.++++.-+++|++++.++ +|.+.|+...|.++|. .+++
T Consensus       290 Wri~tG~ClRrFdr--AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~-~iis  365 (508)
T KOG0275|consen  290 WRIETGQCLRRFDR--AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGH-HIIS  365 (508)
T ss_pred             EEEecchHHHHhhh--hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCC-eEEE
Confidence            99999877666543  578999999999999999999999999999999999999999 9999999999999999 7999


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ++.||+|++|+..+.+++.+++...           ...+|+++-.-|.     +...++++...+++++.++..     
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~-----------~d~~vnsv~~~PK-----npeh~iVCNrsntv~imn~qG-----  424 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLG-----------TDYPVNSVILLPK-----NPEHFIVCNRSNTVYIMNMQG-----  424 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCC-----------CcccceeEEEcCC-----CCceEEEEcCCCeEEEEeccc-----
Confidence            9999999999999999999987441           3467888888775     678899999999999999885     


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec---CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                          +.+..+.   ...+..-+...|   |.|.++.+.++|+.++.|.
T Consensus       425 ------------------------------------QvVrsfsSGkREgGdFi~~~lS---pkGewiYcigED~vlYCF~  465 (508)
T KOG0275|consen  425 ------------------------------------QVVRSFSSGKREGGDFINAILS---PKGEWIYCIGEDGVLYCFS  465 (508)
T ss_pred             ------------------------------------eEEeeeccCCccCCceEEEEec---CCCcEEEEEccCcEEEEEE
Confidence                                                2222332   123445556678   9999999999999999999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +.++         .+...+.-|...+..++-+| ..+.|++-++||.+++|.
T Consensus       466 ~~sG---------~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  466 VLSG---------KLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eecC---------ceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence            9999         77778888999999999999 778999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3e-38  Score=232.85  Aligned_cols=296  Identities=14%  Similarity=0.128  Sum_probs=241.2

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      -.|+||+.+++.+.++.+ |.+|.+++.|.+..+|-..+|+.+.++.+|.+.|+++....+.+++++|+.|.++++||++
T Consensus         4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            458999999999999999 9999999999999999998999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-----CCcEEEEeCc-------CceeeeeEecCcccceeEEEEee
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIR-------QHCLYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~  156 (375)
                      +++.+...+.    ..+|..+.|++++++++...+     .+.|.++|++       ..++...+. .+.+.++.+-|.|
T Consensus        83 tGk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~  157 (327)
T KOG0643|consen   83 TGKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGP  157 (327)
T ss_pred             CCcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecc
Confidence            9987776665    689999999999999887754     4679999998       345566777 7889999999999


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                      -++ .|++|.+||.|..||+++++.+..-...            |...|+.+.+++      +..++++++.|.+-++||
T Consensus       158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~------------h~~~Ind~q~s~------d~T~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEE------------HSSKINDLQFSR------DRTYFITGSKDTTAKLVD  218 (327)
T ss_pred             cCC-EEEEecCCCcEEEEEcccCceeeechhh------------hccccccccccC------CcceEEecccCccceeee
Confidence            999 7999999999999999998665544322            567999999999      899999999999999999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      ..+.                                        .+++++.. ..||++.+++   |-...++.|+....
T Consensus       219 ~~tl----------------------------------------~v~Kty~t-e~PvN~aais---P~~d~VilgGGqeA  254 (327)
T KOG0643|consen  219 VRTL----------------------------------------EVLKTYTT-ERPVNTAAIS---PLLDHVILGGGQEA  254 (327)
T ss_pred             ccce----------------------------------------eeEEEeee-cccccceecc---cccceEEecCCcee
Confidence            9973                                        34444443 5789999999   65555555543221


Q ss_pred             --EEEEeCCCceeee---ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          317 --VKVWDCSRFQGVQ---TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       317 --i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                        |.-=+.+.++...   ..--.+.+....+|-++|++++|+| +|+..++|++||.|++..+
T Consensus       255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEe
Confidence              2222222221111   0011144556789999999999999 9999999999999999765

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.7e-40  Score=258.46  Aligned_cols=249  Identities=18%  Similarity=0.248  Sum_probs=219.3

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      .++.|+++|+++.|+++ +.+++||+.+|.|++|+..-. .++.++.| ...|.+++|+|+...+++++.||+|+|||..
T Consensus       133 ilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             HhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence            46789999999999999 899999999999999997644 45555554 5999999999999999999999999999988


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      ..+   .-..+.+|.-.|.+++|+|...+|++++.|..|++||.++++++.++. +|...|..+.|.|+++ .|++++.|
T Consensus       211 ~~k---ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N-~Llt~skD  285 (464)
T KOG0284|consen  211 MPK---EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGN-WLLTGSKD  285 (464)
T ss_pred             CCc---hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCC-eeEEccCC
Confidence            543   334457889999999999999999999999999999999999999999 9999999999999997 79999999


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      ..++++|+++.+.+..++.             |...+++++|+|.     ...+|.+|+.||.|..|.+...+       
T Consensus       286 ~~~kv~DiR~mkEl~~~r~-------------Hkkdv~~~~WhP~-----~~~lftsgg~Dgsvvh~~v~~~~-------  340 (464)
T KOG0284|consen  286 QSCKVFDIRTMKELFTYRG-------------HKKDVTSLTWHPL-----NESLFTSGGSDGSVVHWVVGLEE-------  340 (464)
T ss_pred             ceEEEEehhHhHHHHHhhc-------------chhhheeeccccc-----cccceeeccCCCceEEEeccccc-------
Confidence            9999999998888888773             5789999999998     88999999999999999988321       


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                                      .....-.+|...|++++|+   |-|.+|++|+.|.++++|.-...
T Consensus       341 --------------------------------p~~~i~~AHd~~iwsl~~h---PlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  341 --------------------------------PLGEIPPAHDGEIWSLAYH---PLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             --------------------------------cccCCCcccccceeeeecc---ccceeEeecCCCcceeeeccCCC
Confidence                                            1112345789999999999   89999999999999999976543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=9.6e-40  Score=238.62  Aligned_cols=289  Identities=16%  Similarity=0.189  Sum_probs=248.2

Q ss_pred             CCCeeeecCCCceeEEEEecC--CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            6 AKPRRLRGHKATATCCIASRD--RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +...+-.||+.+|..++|+|-  +|-+|++++.|+.-.+-+-++|.-+.++.+|.+.|++..++.+...-++++.|-+-+
T Consensus         5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftak   84 (334)
T KOG0278|consen    5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK   84 (334)
T ss_pred             cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence            345667899999999999863  378999999999999999999999999999999999999998888888999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      +||.-++..+..+.    |..-|..++|+.|.++|++|+.+..++|||++..+ +...+. +|.+.|..+.|....+ .+
T Consensus        85 vw~a~tgdelhsf~----hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~-~i  158 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE----HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDK-CI  158 (334)
T ss_pred             hhhhhhhhhhhhhh----hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCc-eE
Confidence            99998876555443    47789999999999999999999999999998654 466777 9999999999999887 78


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ++++.|++|++||.++++.++.+.+.              .+|+++.+++      +|++|.++. .+.|.+||..+.. 
T Consensus       159 LSSadd~tVRLWD~rTgt~v~sL~~~--------------s~VtSlEvs~------dG~ilTia~-gssV~Fwdaksf~-  216 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTEVQSLEFN--------------SPVTSLEVSQ------DGRILTIAY-GSSVKFWDAKSFG-  216 (334)
T ss_pred             EeeccCCceEEEEeccCcEEEEEecC--------------CCCcceeecc------CCCEEEEec-CceeEEecccccc-
Confidence            88899999999999999999999865              7899999999      688777665 4689999999742 


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                             +++.+. -...|.+...+   |+...+++|++|..++.||.
T Consensus       217 ---------------------------------------~lKs~k-~P~nV~SASL~---P~k~~fVaGged~~~~kfDy  253 (334)
T KOG0278|consen  217 ---------------------------------------LLKSYK-MPCNVESASLH---PKKEFFVAGGEDFKVYKFDY  253 (334)
T ss_pred             ---------------------------------------ceeecc-Ccccccccccc---CCCceEEecCcceEEEEEec
Confidence                                                   222222 23567888888   88899999999999999999


Q ss_pred             CCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          323 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .++..        +.....+|.++|.++.|+| +|+..++|+.||+|++|..
T Consensus       254 ~TgeE--------i~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  254 NTGEE--------IGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             cCCce--------eeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEe
Confidence            99953        2222489999999999999 9999999999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-37  Score=258.21  Aligned_cols=329  Identities=14%  Similarity=0.205  Sum_probs=273.1

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC-CeEEEEECCCCCcc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASW   93 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~   93 (375)
                      ...|+|.+|++. ...||+|-..|...+|.+....+++.+.....+|..++|+..|..|+.|+.. |++-||++++.   
T Consensus       265 ~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---  340 (893)
T KOG0291|consen  265 SSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---  340 (893)
T ss_pred             ccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---
Confidence            367999999998 8999999999999999999999999999888999999999999999998875 89999999864   


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                      .-+-..++|...+++++++|||+++++|++||.|+|||..++-+..+|. .|++.|+.+.|+..++ .+++.+.||+|+.
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~-~llssSLDGtVRA  418 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGN-VLLSSSLDGTVRA  418 (893)
T ss_pred             ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCC-EEEEeecCCeEEe
Confidence            3334456788999999999999999999999999999999999999999 9999999999999998 8999999999999


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-cEEEEeCCCcceeecccccCCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      ||+...+..+++..+            .+....+++..|      .|.++++|+.|. .|.+|++.+++....+.. +..
T Consensus       419 wDlkRYrNfRTft~P------------~p~QfscvavD~------sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEg  479 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSP------------EPIQFSCVAVDP------SGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEG  479 (893)
T ss_pred             eeecccceeeeecCC------------CceeeeEEEEcC------CCCEEEeeccceEEEEEEEeecCeeeehhcC-CCC
Confidence            999999999999866            456678899988      799999999876 699999999987765554 467


Q ss_pred             CCCceeecccccceee------eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          253 LKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      ++.+++|+|+|..++.      +..|+.....  ..+.++ .+...+..++|+   |+|+.|+++.-||.|.+||.+.+.
T Consensus       480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFR---PDGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             cceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEc---CCCCeEEEEEecceEEEEEhhhce
Confidence            8999999999998874      2222222211  111122 346679999999   999999999999999999999875


Q ss_pred             eeeecch-----------hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          327 GVQTSIN-----------NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       327 ~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +......           ..............+.+++++ ||++|++|+....|++|++.
T Consensus       554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             eeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECc
Confidence            5421110           111122233456789999999 99999999999999999874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-39  Score=247.26  Aligned_cols=253  Identities=17%  Similarity=0.283  Sum_probs=231.9

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE   81 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~   81 (375)
                      .+++..+.|+||++.|..++|+.. |++||+++.|-.+++||.++ .++++.+.+|...|.+++|-|.|.++++++.|.+
T Consensus       138 ~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t  216 (406)
T KOG0295|consen  138 ETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT  216 (406)
T ss_pred             cchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence            567778899999999999999998 89999999998899999987 5678888999999999999999999999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCC---
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK---  158 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---  158 (375)
                      |+.|++.++   ..+..+.+|...|..++.+.||..+++++.|.++++|-+.++++...++ .|+.+|.+++|.|..   
T Consensus       217 ik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~  292 (406)
T KOG0295|consen  217 IKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYP  292 (406)
T ss_pred             eeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCc
Confidence            999999975   5566777889999999999999999999999999999999999999999 999999999997631   


Q ss_pred             -----------CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          159 -----------PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       159 -----------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                                 ..++.+++.|++|++||+.++.++.++. +            |..+|..++|+|      .|++|+++.
T Consensus       293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-g------------hdnwVr~~af~p------~Gkyi~Sca  353 (406)
T KOG0295|consen  293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-G------------HDNWVRGVAFSP------GGKYILSCA  353 (406)
T ss_pred             chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-c------------ccceeeeeEEcC------CCeEEEEEe
Confidence                       1279999999999999999999999998 3            589999999999      799999999


Q ss_pred             cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194          228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                      .|+++++||+++.                                        +++..+..|..-+++++|.   .+..+
T Consensus       354 DDktlrvwdl~~~----------------------------------------~cmk~~~ah~hfvt~lDfh---~~~p~  390 (406)
T KOG0295|consen  354 DDKTLRVWDLKNL----------------------------------------QCMKTLEAHEHFVTSLDFH---KTAPY  390 (406)
T ss_pred             cCCcEEEEEeccc----------------------------------------eeeeccCCCcceeEEEecC---CCCce
Confidence            9999999999974                                        6777888999999999998   77789


Q ss_pred             EEEecCCCeEEEEeC
Q 017194          308 LISGGNDKLVKVWDC  322 (375)
Q Consensus       308 l~s~~~dg~i~iwd~  322 (375)
                      +++|+-|..+++|..
T Consensus       391 VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  391 VVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEeccccceeeeeec
Confidence            999999999999974

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-38  Score=270.96  Aligned_cols=302  Identities=17%  Similarity=0.219  Sum_probs=250.4

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      .|...+..|..++|+|. ..+++++-..|.|++||.+-+.++..+..|.++|..++|+|++..+++|+.|..|++|+.++
T Consensus         4 kfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             hhhcccccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            45556788999999999 89999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                         .+.+.++.+|-..|..+.|++.-.+|+++++|.+|+||+..+++++..+. +|...|.|.+|+|... ++++++-|.
T Consensus        83 ---rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSaSLDQ  157 (1202)
T KOG0292|consen   83 ---RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSASLDQ  157 (1202)
T ss_pred             ---ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEecccc
Confidence               45667778899999999999999999999999999999999999999999 9999999999999877 899999999


Q ss_pred             eEEEeeCCCCCcceE----EecCC------CCCCCC------CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          170 KLVMWDFSKGRPNKI----VNFGL------PENNGN------AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~----~~~~~------~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      +|++||+..-+....    ++...      .++-+.      .-.-.|...|+-++|+|      .-.++++|+.|..|+
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp------TlpliVSG~DDRqVK  231 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP------TLPLIVSGADDRQVK  231 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC------CcceEEecCCcceee
Confidence            999999863211100    00000      000000      00112667889999999      689999999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +|.+...                                      +.-.+.+..+|...|.++-|+   |...++++.|+
T Consensus       232 lWrmnet--------------------------------------KaWEvDtcrgH~nnVssvlfh---p~q~lIlSnsE  270 (1202)
T KOG0292|consen  232 LWRMNET--------------------------------------KAWEVDTCRGHYNNVSSVLFH---PHQDLILSNSE  270 (1202)
T ss_pred             EEEeccc--------------------------------------cceeehhhhcccCCcceEEec---CccceeEecCC
Confidence            9999842                                      123345788999999999999   88899999999


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |++|+|||+...         ..++.+....++-+.++.+| ..+++ .++.|+.+.++.++
T Consensus       271 DksirVwDm~kR---------t~v~tfrrendRFW~laahP-~lNLf-AAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  271 DKSIRVWDMTKR---------TSVQTFRRENDRFWILAAHP-ELNLF-AAGHDSGMIVFKLE  321 (1202)
T ss_pred             CccEEEEecccc---------cceeeeeccCCeEEEEEecC-Cccee-eeecCCceEEEEEc
Confidence            999999999998         55667777778889999999 76644 45566667777653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.7e-39  Score=239.73  Aligned_cols=253  Identities=18%  Similarity=0.231  Sum_probs=221.3

Q ss_pred             eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEE
Q 017194           50 VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI  129 (375)
Q Consensus        50 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (375)
                      ++..+.+|++.|+.+.|+|+|.+|++|+.|..|.+|+....  .+....+++|.+.|..+.|.+|++.|++++.|.+++.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            35567889999999999999999999999999999997642  3555666799999999999999999999999999999


Q ss_pred             EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      ||.++++.++.++ +|...|+++.-+.-|..++.+++.|+++++||+++..+++.++              .+..++++.
T Consensus       117 wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------~kyqltAv~  181 (338)
T KOG0265|consen  117 WDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------NKYQLTAVG  181 (338)
T ss_pred             Eecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--------------cceeEEEEE
Confidence            9999999999999 9999999999777777688899999999999999999988886              347899999


Q ss_pred             ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194          210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH  289 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
                      |..      .+..+.+|+-|+.|++||++..                                        ...+.+.+|
T Consensus       182 f~d------~s~qv~sggIdn~ikvWd~r~~----------------------------------------d~~~~lsGh  215 (338)
T KOG0265|consen  182 FKD------TSDQVISGGIDNDIKVWDLRKN----------------------------------------DGLYTLSGH  215 (338)
T ss_pred             ecc------cccceeeccccCceeeeccccC----------------------------------------cceEEeecc
Confidence            998      6999999999999999999864                                        456789999


Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc----cceeeeeecCCCCCcEEEeeC
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN----KKVNWLCTTPTESENLVVCDT  365 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~  365 (375)
                      ..+|+.+..+   ++|.++.+-+.|.++++||++.....+     +++..+.+|.    .....++|+| ++..+.+|+.
T Consensus       216 ~DtIt~lsls---~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~  286 (338)
T KOG0265|consen  216 ADTITGLSLS---RYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSA  286 (338)
T ss_pred             cCceeeEEec---cCCCccccccccceEEEEEecccCCCC-----ceEEEeecchhhhhhhcceeeccC-CCCccccccc
Confidence            9999999999   999999999999999999998753221     3344555543    3456778999 9999999999


Q ss_pred             CCeEEEEec
Q 017194          366 SKVVKVYSI  374 (375)
Q Consensus       366 dg~v~iw~~  374 (375)
                      |..+++||.
T Consensus       287 dr~vyvwd~  295 (338)
T KOG0265|consen  287 DRFVYVWDT  295 (338)
T ss_pred             cceEEEeec
Confidence            999999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-39  Score=249.64  Aligned_cols=287  Identities=20%  Similarity=0.238  Sum_probs=244.6

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      .+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++..+++.|.+.|..|++..  ..+++++.|++|+.|.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            35678999999999999998447899999999999999999999999999999999999986  6789999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ++.    .++.++.+ ...+..+.-+..+..+++++.  .|.|||.....+++.+. --...|.++.|+|-...+|++++
T Consensus       136 ~~~----~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  136 IDG----PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             ccC----Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceee-cCCCceeEEecCCCcchheeeec
Confidence            884    24444443 566777777777778888875  59999999889999998 66778999999999887899999


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                      +|+.|.+||++++.+++.+...              -.-+.|+|+|      +.-.+++|++|..++.||++...     
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~~--------------mRTN~IswnP------eafnF~~a~ED~nlY~~DmR~l~-----  262 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVILT--------------MRTNTICWNP------EAFNFVAANEDHNLYTYDMRNLS-----  262 (433)
T ss_pred             cCCceEEEecccCCccceeeee--------------ccccceecCc------cccceeeccccccceehhhhhhc-----
Confidence            9999999999999999988755              5668899999      68889999999999999999632     


Q ss_pred             cccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                                                        ..+....+|...|.+++||   |.|+-+++||.|.+|+||.++.+.
T Consensus       263 ----------------------------------~p~~v~~dhvsAV~dVdfs---ptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  263 ----------------------------------RPLNVHKDHVSAVMDVDFS---PTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             ----------------------------------ccchhhcccceeEEEeccC---CCcchhccccccceEEEeecCCCc
Confidence                                              3455778999999999999   999999999999999999999874


Q ss_pred             eeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          327 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ..      .+  -...--..|.++.|+. |.+|+++||.|+.|++|.-
T Consensus       306 SR------di--YhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  306 SR------DI--YHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ch------hh--hhHhhhheeeEEEEec-cccEEEecCCCcceeeeec
Confidence            21      11  1112235689999999 9999999999999999963

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.5e-40  Score=250.63  Aligned_cols=253  Identities=18%  Similarity=0.281  Sum_probs=222.1

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ..++.|.||++.|.|+.|.   .+.+++|+.|.+|++||+++++++.++-+|.+.|..+.|+.  .++++++.|.++.+|
T Consensus       228 ~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVW  302 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVW  302 (499)
T ss_pred             HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEE
Confidence            4567789999999999996   56999999999999999999999999999999999999984  589999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      |+...........+.+|...|+.+.|+  .+++++++.|.+|++|++.+++.++++. +|...|-|+.+.  ++ ++++|
T Consensus       303 dm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr--~r-lvVSG  376 (499)
T KOG0281|consen  303 DMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSG  376 (499)
T ss_pred             eccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhcc--Ce-EEEec
Confidence            999877666677788999999999985  4599999999999999999999999999 999999998875  44 89999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.|.+|++||+..|.++..++ +            |..-|.++.|        +.+.+++|..||+|++||+..+..+..
T Consensus       377 SSDntIRlwdi~~G~cLRvLe-G------------HEeLvRciRF--------d~krIVSGaYDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  377 SSDNTIRLWDIECGACLRVLE-G------------HEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             CCCceEEEEeccccHHHHHHh-c------------hHHhhhheee--------cCceeeeccccceEEEEecccccCCcc
Confidence            999999999999999999988 4            5788999999        688999999999999999997644322


Q ss_pred             ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      ...                               .-++..+..|.+.|..+.|.     ...+++++.|.+|.|||..++
T Consensus       436 ~~~-------------------------------~~Cl~~lv~hsgRVFrLQFD-----~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  436 PAS-------------------------------TLCLRTLVEHSGRVFRLQFD-----EFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             ccc-------------------------------chHHHhhhhccceeEEEeec-----ceEEEeccCCCeEEEEEcCCC
Confidence            211                               13556777899999999985     467889999999999999887


Q ss_pred             e
Q 017194          326 Q  326 (375)
Q Consensus       326 ~  326 (375)
                      .
T Consensus       480 ~  480 (499)
T KOG0281|consen  480 P  480 (499)
T ss_pred             C
Confidence            4

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-38  Score=244.05  Aligned_cols=246  Identities=17%  Similarity=0.254  Sum_probs=223.2

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII  130 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (375)
                      .+.+.+|.+.|.++++.|.+..+++|+.|++|+|||+.+++   ...++.+|...|..+++++-..|+++++.|+.|+.|
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe---EEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            45678899999999999999999999999999999999864   445566788999999999999999999999999999


Q ss_pred             eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                      |++..+.++.+. +|-+.|.+++.+|.-+ .|++|+.|.++++||+++...+..+. +            |...|.++.+
T Consensus       221 DLe~nkvIR~Yh-GHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~-G------------H~~~V~~V~~  285 (460)
T KOG0285|consen  221 DLEYNKVIRHYH-GHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLS-G------------HTNPVASVMC  285 (460)
T ss_pred             echhhhhHHHhc-cccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEec-C------------CCCcceeEEe
Confidence            999999999999 9999999999999988 89999999999999999999888887 4            5789999999


Q ss_pred             cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194          211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  290 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
                      .|      ....+++|+.|++|++||++.+                                        +....+..|.
T Consensus       286 ~~------~dpqvit~S~D~tvrlWDl~ag----------------------------------------kt~~tlt~hk  319 (460)
T KOG0285|consen  286 QP------TDPQVITGSHDSTVRLWDLRAG----------------------------------------KTMITLTHHK  319 (460)
T ss_pred             ec------CCCceEEecCCceEEEeeeccC----------------------------------------ceeEeeeccc
Confidence            98      5778999999999999999975                                        3344788899


Q ss_pred             ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194          291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  370 (375)
Q Consensus       291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~  370 (375)
                      ..|.+++.+   |....+|+++.|+ |+-|++..+         ..+..+.+|..-|+.++... |+ ++++|++.|.+.
T Consensus       320 ksvral~lh---P~e~~fASas~dn-ik~w~~p~g---------~f~~nlsgh~~iintl~~ns-D~-v~~~G~dng~~~  384 (460)
T KOG0285|consen  320 KSVRALCLH---PKENLFASASPDN-IKQWKLPEG---------EFLQNLSGHNAIINTLSVNS-DG-VLVSGGDNGSIM  384 (460)
T ss_pred             ceeeEEecC---CchhhhhccCCcc-ceeccCCcc---------chhhccccccceeeeeeecc-Cc-eEEEcCCceEEE
Confidence            999999999   8888999999875 999999999         77888999999999999987 64 899999999999


Q ss_pred             EEecC
Q 017194          371 VYSIS  375 (375)
Q Consensus       371 iw~~~  375 (375)
                      +||.+
T Consensus       385 fwdwk  389 (460)
T KOG0285|consen  385 FWDWK  389 (460)
T ss_pred             EEecC
Confidence            99963

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-37  Score=257.67  Aligned_cols=283  Identities=18%  Similarity=0.221  Sum_probs=249.2

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      ++.||...|.+++++.+ ...++||+. +.+++|+..+.++++++..  +.+.+..|-|.++++++|...|.+.+||+..
T Consensus       368 ~~~GHR~dVRsl~vS~d-~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSD-SILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeccchhheeEEEeecC-ceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            56799999999999998 666776654 6899999999999999974  4889999999999999999999999999986


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----ceee--------eeEecCcccceeEEEEee
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLY--------KSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~--------~~~~~~~~~~v~~~~~~~  156 (375)
                      .   ..+...+.|.+.|.+++.+||++.+++|+.|.+|++||..-     +...        +++.  -...|.++.++|
T Consensus       444 ~---~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe--l~ddvL~v~~Sp  518 (888)
T KOG0306|consen  444 A---SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE--LEDDVLCVSVSP  518 (888)
T ss_pred             h---hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe--ccccEEEEEEcC
Confidence            4   44555567899999999999999999999999999999751     1111        2232  456899999999


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                      |++ +|+++--|.+|++|-+++.+..-.+. +            |.-+|.++.++|      |++++++|+.|..|++|-
T Consensus       519 dgk-~LaVsLLdnTVkVyflDtlKFflsLY-G------------HkLPV~smDIS~------DSklivTgSADKnVKiWG  578 (888)
T KOG0306|consen  519 DGK-LLAVSLLDNTVKVYFLDTLKFFLSLY-G------------HKLPVLSMDISP------DSKLIVTGSADKNVKIWG  578 (888)
T ss_pred             CCc-EEEEEeccCeEEEEEecceeeeeeec-c------------cccceeEEeccC------CcCeEEeccCCCceEEec
Confidence            999 79999999999999999888766665 4            688999999999      899999999999999999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      +.-+                                        .|-..+.+|...|.++.|.   |+...+.++|.|+.
T Consensus       579 LdFG----------------------------------------DCHKS~fAHdDSvm~V~F~---P~~~~FFt~gKD~k  615 (888)
T KOG0306|consen  579 LDFG----------------------------------------DCHKSFFAHDDSVMSVQFL---PKTHLFFTCGKDGK  615 (888)
T ss_pred             cccc----------------------------------------hhhhhhhcccCceeEEEEc---ccceeEEEecCcce
Confidence            8854                                        4556888999999999999   88999999999999


Q ss_pred             EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |+-||-...         +.++.+.+|...|++++.+| +|.++++++.|.+|++|.-
T Consensus       616 vKqWDg~kF---------e~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  616 VKQWDGEKF---------EEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             EEeechhhh---------hhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeeec
Confidence            999999998         88889999999999999999 9999999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.4e-37  Score=226.29  Aligned_cols=246  Identities=15%  Similarity=0.252  Sum_probs=210.3

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      +|+..|++++|+|. |++||+|+-|.++.||.-..+  +++.++++|...|.+++|+++|++||+++.|+.|-||.+..+
T Consensus        59 ~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             cchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            79999999999999 899999999999999987654  568899999999999999999999999999999999999988


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc---CceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      ........++.|...|..+.|+|...+|++++.|.+|++|+-.   .-.+++++. +|...|.+++|+|.|. .|++++.
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~-rl~s~sd  215 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGS-RLVSCSD  215 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCc-eEEEecC
Confidence            8888999999999999999999999999999999999999876   236788999 9999999999999998 7999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      |++++||...+.-     ...            |...++.++|.        ...+++++.|+.|++|.-....      
T Consensus       216 D~tv~Iw~~~~~~-----~~~------------~sr~~Y~v~W~--------~~~IaS~ggD~~i~lf~~s~~~------  264 (312)
T KOG0645|consen  216 DGTVSIWRLYTDL-----SGM------------HSRALYDVPWD--------NGVIASGGGDDAIRLFKESDSP------  264 (312)
T ss_pred             CcceEeeeeccCc-----chh------------cccceEeeeec--------ccceEeccCCCEEEEEEecCCC------
Confidence            9999999876221     111            45678888883        5689999999999999776420      


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEee-eeecCCCccEEEEEEeecCC-CCcEEEEecCCCeEEEEeCC
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD-YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~-~~~~l~s~~~dg~i~iwd~~  323 (375)
                                    ++              ....++ ..-..|...|++++|.   | -..+|++|+.||.|++|.+.
T Consensus       265 --------------d~--------------p~~~l~~~~~~aHe~dVNsV~w~---p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  265 --------------DE--------------PSWNLLAKKEGAHEVDVNSVQWN---PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             --------------CC--------------chHHHHHhhhcccccccceEEEc---CCCCCceeecCCCceEEEEEec
Confidence                          10              111112 2455788999999999   6 36799999999999999874

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-37  Score=222.81  Aligned_cols=244  Identities=18%  Similarity=0.251  Sum_probs=212.9

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII  130 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (375)
                      ...+..+.++|.++.|+-+|++.++++.|.+|++|+...+   ..++++.+|...|..++.+.|+..+++|+.|..+.+|
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            5567789999999999999999999999999999998754   6677888899999999999999999999999999999


Q ss_pred             eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      |+.+|+.++.|+ +|.+.|+.++|+.+.. .+++|+.|.++++||.++.  ++++.+...             ...|.++
T Consensus        87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea-------------~D~V~Si  151 (307)
T KOG0316|consen   87 DVNTGKVDRRFR-GHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEA-------------KDGVSSI  151 (307)
T ss_pred             EcccCeeeeecc-cccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhh-------------cCceeEE
Confidence            999999999999 9999999999999988 8999999999999999864  455555432             4678889


Q ss_pred             eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194          209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG  288 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~  288 (375)
                      .+        .+..+++|+.||+++.||++.+.                                        +..... 
T Consensus       152 ~v--------~~heIvaGS~DGtvRtydiR~G~----------------------------------------l~sDy~-  182 (307)
T KOG0316|consen  152 DV--------AEHEIVAGSVDGTVRTYDIRKGT----------------------------------------LSSDYF-  182 (307)
T ss_pred             Ee--------cccEEEeeccCCcEEEEEeecce----------------------------------------eehhhc-
Confidence            88        47899999999999999999752                                        222222 


Q ss_pred             CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceee--eeecCCCCCcEEEeeCC
Q 017194          289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW--LCTTPTESENLVVCDTS  366 (375)
Q Consensus       289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~s~~~d  366 (375)
                       ..+|+++.|+   +|++..++++.|+++++.|-.++         ++++.+.+|...-..  .+++. ....+++|++|
T Consensus       183 -g~pit~vs~s---~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~q-sdthV~sgSED  248 (307)
T KOG0316|consen  183 -GHPITSVSFS---KDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSED  248 (307)
T ss_pred             -CCcceeEEec---CCCCEEEEeeccceeeecccchh---------HHHHHhcccccceeeeeeeecc-cceeEEeccCC
Confidence             4689999999   99999999999999999999999         999999999875443  45555 55689999999


Q ss_pred             CeEEEEecC
Q 017194          367 KVVKVYSIS  375 (375)
Q Consensus       367 g~v~iw~~~  375 (375)
                      |.|++||+.
T Consensus       249 G~Vy~wdLv  257 (307)
T KOG0316|consen  249 GKVYFWDLV  257 (307)
T ss_pred             ceEEEEEec
Confidence            999999973

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.7e-37  Score=232.82  Aligned_cols=300  Identities=17%  Similarity=0.269  Sum_probs=239.9

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------------C------ceeeEeeecCccEEEEEEeC
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------K------DVQLVTDVGNGPVTSLCFKS   68 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------------~------~~~~~~~~~~~~v~~l~~~~   68 (375)
                      +...+..|++++.+.+|+|| |.++|+|+.|..|+|.|++.            +      -.++++-.|.++|+++.|+|
T Consensus       104 Et~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             ceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            34567889999999999999 99999999999999999871            1      12667777999999999999


Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe--cCcc
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHS  146 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~  146 (375)
                      ....|++++.|++|+++|+......+..+.+.. ..+|.++.|+|.|.+|++|..-.++++||+.+-++...-.  .+|.
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            999999999999999999986544445555543 5789999999999999999999999999999877643322  2789


Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      +.|+++.+++.++ +.++++.||.|++||--+++++.++...+           ....|.+..|..      +++++++.
T Consensus       262 ~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH-----------~gsevcSa~Ftk------n~kyiLsS  323 (430)
T KOG0640|consen  262 GAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAH-----------GGSEVCSAVFTK------NGKYILSS  323 (430)
T ss_pred             cceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhc-----------CCceeeeEEEcc------CCeEEeec
Confidence            9999999999998 89999999999999999999999887441           246789999988      89999999


Q ss_pred             ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                      +.|..+++|.+.+++.........                                   ..+....-+...|.   ....
T Consensus       324 G~DS~vkLWEi~t~R~l~~YtGAg-----------------------------------~tgrq~~rtqAvFN---htEd  365 (430)
T KOG0640|consen  324 GKDSTVKLWEISTGRMLKEYTGAG-----------------------------------TTGRQKHRTQAVFN---HTED  365 (430)
T ss_pred             CCcceeeeeeecCCceEEEEecCC-----------------------------------cccchhhhhhhhhc---Cccc
Confidence            999999999999875443221110                                   00111111223344   4555


Q ss_pred             EEEEecC-CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          307 YLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       307 ~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |++.-.+ .+.+.-||.++..        +......+|.+.+.++.-+| .+.-+++|+.|-++|+|-
T Consensus       366 yVl~pDEas~slcsWdaRtad--------r~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  366 YVLFPDEASNSLCSWDARTAD--------RVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             eEEccccccCceeeccccchh--------hhhhcccCCCCCceEEEeCC-CCCceeeecccceeeeee
Confidence            6665543 5779999999984        44445678999999999999 777899999999999995

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-37  Score=251.86  Aligned_cols=249  Identities=18%  Similarity=0.301  Sum_probs=221.6

Q ss_pred             eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEe
Q 017194           52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID  131 (375)
Q Consensus        52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (375)
                      +.+..+...|.++.|+|....++++-..|.+.|||.++....+.+..   ...+|.+..|-+..+++++|++|..|++|+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEe
Confidence            34555889999999999999999999999999999998655554444   478999999999999999999999999999


Q ss_pred             CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                      ..+++.+..|. .|...|++++.+|..+ ++++++.|-.|++||.+.+ .+.++++ +            |...|.+++|
T Consensus        84 ynt~ekV~~Fe-AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe-G------------H~HyVMqv~f  148 (794)
T KOG0276|consen   84 YNTGEKVKTFE-AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE-G------------HEHYVMQVAF  148 (794)
T ss_pred             cccceeeEEee-ccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc-C------------cceEEEEEEe
Confidence            99999999999 9999999999999999 7999999999999999865 4445555 4            6889999999


Q ss_pred             cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194          211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  290 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
                      .|.     |.+.+++++-|++|++|.+...                                        .+..++.+|.
T Consensus       149 nPk-----D~ntFaS~sLDrTVKVWslgs~----------------------------------------~~nfTl~gHe  183 (794)
T KOG0276|consen  149 NPK-----DPNTFASASLDRTVKVWSLGSP----------------------------------------HPNFTLEGHE  183 (794)
T ss_pred             cCC-----CccceeeeeccccEEEEEcCCC----------------------------------------CCceeeeccc
Confidence            997     8999999999999999999864                                        3455888999


Q ss_pred             ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194          291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  370 (375)
Q Consensus       291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~  370 (375)
                      ..|+++.+-+- +|..||++|++|.+|+|||.++.         .+++++.||...|..++|+| .-..++||++||+|+
T Consensus       184 kGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvr  252 (794)
T KOG0276|consen  184 KGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVR  252 (794)
T ss_pred             cCcceEEeccC-CCcceEEecCCCceEEEeecchH---------HHHHHhhcccccceEEEecC-CCcEEEEecCCccEE
Confidence            99999999732 34569999999999999999998         89999999999999999999 667999999999999


Q ss_pred             EEec
Q 017194          371 VYSI  374 (375)
Q Consensus       371 iw~~  374 (375)
                      ||+-
T Consensus       253 iWhs  256 (794)
T KOG0276|consen  253 IWNS  256 (794)
T ss_pred             EecC
Confidence            9973

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-36  Score=259.64  Aligned_cols=246  Identities=21%  Similarity=0.295  Sum_probs=213.2

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeC-cCc
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI-RQH  135 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~  135 (375)
                      +...|.++.|+++|+.+++++.++.+++|+....+. .....+.+|...|.+++|+|+++++++++.|++|++||+ ..+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence            378899999999999999999999999999965542 345555788999999999999999999999999999999 556


Q ss_pred             eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      ..+++++ +|...|++++|+|+++ ++++|+.|++|++||++++++...+..             |...|.+++|++   
T Consensus       237 ~~~~~l~-gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~-------------hs~~is~~~f~~---  298 (456)
T KOG0266|consen  237 RNLKTLK-GHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKG-------------HSDGISGLAFSP---  298 (456)
T ss_pred             eEEEEec-CCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeec-------------cCCceEEEEECC---
Confidence            8899999 9999999999999996 899999999999999999999999985             478999999999   


Q ss_pred             ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc--cE
Q 017194          216 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA--AA  293 (375)
Q Consensus       216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v  293 (375)
                         ++++|++++.|+.|++||+.++...                                      +...+.++..  ++
T Consensus       299 ---d~~~l~s~s~d~~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~  337 (456)
T KOG0266|consen  299 ---DGNLLVSASYDGTIRVWDLETGSKL--------------------------------------CLKLLSGAENSAPV  337 (456)
T ss_pred             ---CCCEEEEcCCCccEEEEECCCCcee--------------------------------------eeecccCCCCCCce
Confidence               8999999999999999999985311                                      2334444444  59


Q ss_pred             EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccce---eeeeecCCCCCcEEEeeCCCeEE
Q 017194          294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV---NWLCTTPTESENLVVCDTSKVVK  370 (375)
Q Consensus       294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~s~~~dg~v~  370 (375)
                      +.+.|+   |++++++++..|+.+++||+...         ..+....+|...+   .+...++ .++++++++.|+.|+
T Consensus       338 ~~~~fs---p~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~  404 (456)
T KOG0266|consen  338 TSVQFS---PNGKYLLSASLDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVY  404 (456)
T ss_pred             eEEEEC---CCCcEEEEecCCCeEEEEEccCC---------cceeeecccCCcceeEecccccC-CCCeEEEEeCCceEE
Confidence            999999   99999999999999999999998         6667777777643   3334455 899999999999999


Q ss_pred             EEecC
Q 017194          371 VYSIS  375 (375)
Q Consensus       371 iw~~~  375 (375)
                      +|+++
T Consensus       405 ~~~~~  409 (456)
T KOG0266|consen  405 VWDSS  409 (456)
T ss_pred             EEeCC
Confidence            99974

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5.5e-38  Score=244.83  Aligned_cols=288  Identities=18%  Similarity=0.252  Sum_probs=243.1

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ...+..|.+.+..+.|-++ ...|++|+.|..|++|+...++  .+.++.+..++|+++.|.++++++++++.|+.+++|
T Consensus       168 ~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence            4557789999999999998 7899999999999999987666  577888888999999999999999999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      ++..   .+...++.+|...|+++.|......+++|+.|.+|+.||+....+.+++.  ....+.+|...+.   .+++|
T Consensus       247 nvd~---~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~~---~~~Sg  318 (459)
T KOG0288|consen  247 NVDS---LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSIS---DVISG  318 (459)
T ss_pred             eccc---hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecce---eeeec
Confidence            9985   46667788899999999999887779999999999999999988877765  4566777877633   68999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      -.|++|++||.++..+...+..+              +.|+++..++      ++..+.+.+.|..+.++|+++......
T Consensus       319 H~DkkvRfwD~Rs~~~~~sv~~g--------------g~vtSl~ls~------~g~~lLsssRDdtl~viDlRt~eI~~~  378 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKTRSVPLG--------------GRVTSLDLSM------DGLELLSSSRDDTLKVIDLRTKEIRQT  378 (459)
T ss_pred             ccccceEEEeccCCceeeEeecC--------------cceeeEeecc------CCeEEeeecCCCceeeeecccccEEEE
Confidence            99999999999999999999866              7999999999      799999999999999999998533221


Q ss_pred             ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      ....             |                     -..  ....+.+.||   |++.|+++||.||.|+||++.++
T Consensus       379 ~sA~-------------g---------------------~k~--asDwtrvvfS---pd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  379 FSAE-------------G---------------------FKC--ASDWTRVVFS---PDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             eecc-------------c---------------------ccc--ccccceeEEC---CCCceeeeccCCCcEEEEEccCc
Confidence            1111             0                     111  2348889999   99999999999999999999999


Q ss_pred             eeeeecchhhhhhhhcccc--cceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          326 QGVQTSINNDLLIKNINLN--KKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +.         ...+....  ..|++++|+| .|..|++++.++.+.+|.
T Consensus       420 Kl---------E~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  420 KL---------EKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eE---------EEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence            54         33333322  2699999999 999999999999999994

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.8e-36  Score=221.07  Aligned_cols=286  Identities=15%  Similarity=0.211  Sum_probs=242.1

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE--eeecCccEEEEEEeC-CCCeEEEEcCCCeEEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iw   85 (375)
                      +.+++|...|.+++|+.+ |..|++|+.|+++.+|+++.......  ..+|.+.|..++|+| +...+++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            567899999999999999 89999999999999999987765444  457899999999987 45689999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      |++.+++...+..    .+.-.-+.|+|+|.++++++.|..|.+.|.++.+.....+  ....+..++|+.++. +|+..
T Consensus        93 d~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd-~Fflt  165 (313)
T KOG1407|consen   93 DIRSGKCTARIET----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSND-LFFLT  165 (313)
T ss_pred             EeccCcEEEEeec----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCC-EEEEe
Confidence            9998877666655    3445568899999999999999999999999888877776  667889999997776 67766


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      ...|+|.|.....-+++..++.             |+....+|.|+|      +|+++|+|+.|-.+.+||+..      
T Consensus       166 ~GlG~v~ILsypsLkpv~si~A-------------H~snCicI~f~p------~GryfA~GsADAlvSLWD~~E------  220 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKA-------------HPSNCICIEFDP------DGRYFATGSADALVSLWDVDE------  220 (313)
T ss_pred             cCCceEEEEecccccccccccc-------------CCcceEEEEECC------CCceEeeccccceeeccChhH------
Confidence            7779999999999999999885             478889999999      899999999999999999985      


Q ss_pred             ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                                        +-++..+..+.-+|+.+.||   .||++||+|++|..|-|=+++++
T Consensus       221 ----------------------------------LiC~R~isRldwpVRTlSFS---~dg~~lASaSEDh~IDIA~vetG  263 (313)
T KOG1407|consen  221 ----------------------------------LICERCISRLDWPVRTLSFS---HDGRMLASASEDHFIDIAEVETG  263 (313)
T ss_pred             ----------------------------------hhhheeeccccCceEEEEec---cCcceeeccCccceEEeEecccC
Confidence                                              24566777888999999999   99999999999999999999998


Q ss_pred             eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC---------CeEEEEecC
Q 017194          326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---------KVVKVYSIS  375 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~v~iw~~~  375 (375)
                      ...          ....+.++-..++|+| ...+||-++.|         |.|+++-++
T Consensus       264 d~~----------~eI~~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  264 DRV----------WEIPCEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             CeE----------EEeeccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecCC
Confidence            532          3346778899999999 66677766543         678887653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=257.62  Aligned_cols=297  Identities=16%  Similarity=0.184  Sum_probs=216.3

Q ss_pred             eeee-cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ec----------CccEEEEEEeC---CCCe-
Q 017194            9 RRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VG----------NGPVTSLCFKS---GNED-   72 (375)
Q Consensus         9 ~~l~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~----------~~~v~~l~~~~---~~~~-   72 (375)
                      +.++ +|++.|+++.|++| |+|||+||.|+.|+||.+...+. ..+. ..          ...+..+.-++   .++. 
T Consensus       260 Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             eccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccc
Confidence            4456 89999999999999 99999999999999999876332 1110 00          00011111111   0010 


Q ss_pred             -EEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeE
Q 017194           73 -IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS  151 (375)
Q Consensus        73 -l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  151 (375)
                       .-.+.....+.+-+..-.-..+++..+.+|.+.|.++.|+.++ +|++++.|.+|++|++...+++..|.  |...|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe--cCCeeEE
Confidence             1111111222111111111246788899999999999999765 99999999999999999999999998  9999999


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV  231 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~  231 (375)
                      ++|+|-+..+|++|+-||.|+||++...+...-..+.              .-|++++|.|      +|+..++|+.+|.
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--------------~lITAvcy~P------dGk~avIGt~~G~  474 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--------------DLITAVCYSP------DGKGAVIGTFNGY  474 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhh--------------hhheeEEecc------CCceEEEEEeccE
Confidence            9999988778999999999999999987766655533              7899999999      8999999999999


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG  311 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~  311 (375)
                      +++|+....+.........                              +.-+.. .|. .|+.+.|.|-.++  .+++.
T Consensus       475 C~fY~t~~lk~~~~~~I~~------------------------------~~~Kk~-~~~-rITG~Q~~p~~~~--~vLVT  520 (712)
T KOG0283|consen  475 CRFYDTEGLKLVSDFHIRL------------------------------HNKKKK-QGK-RITGLQFFPGDPD--EVLVT  520 (712)
T ss_pred             EEEEEccCCeEEEeeeEee------------------------------ccCccc-cCc-eeeeeEecCCCCC--eEEEe
Confidence            9999999754332211000                              000011 223 8999999853333  57777


Q ss_pred             cCCCeEEEEeCCCceeeeecchhhhhhhhccccc--ceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +.|..|+|+|.++.         .++..+.++..  .-....|+. ||++|+++++|..|++|++
T Consensus       521 SnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  521 SNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             cCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeC
Confidence            88999999999887         67777776543  335567888 9999999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-37  Score=227.25  Aligned_cols=254  Identities=18%  Similarity=0.218  Sum_probs=228.0

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      +|+.=+.+|.||++.|++...+.+ ....|+++.|-+-++||.-+|..+..+. |..-|.+++|+.|.++|++|+.++-+
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekll  124 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLL  124 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHh
Confidence            466678899999999999999887 7889999999999999999999998887 88999999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      +|||++..  ..+...+.+|.+.|..+.|....+.|++...|++|++||.++++.++++.  ...+|+++.++++|.  +
T Consensus       125 rvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~--i  198 (334)
T KOG0278|consen  125 RVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGR--I  198 (334)
T ss_pred             hhhhccCC--CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCC--E
Confidence            99999854  35677888999999999999999999999999999999999999999998  678999999999996  6


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ++-...+.|.+||..+-..++.++.+              ..|.+..++|      +...+++|+.|..++.||..++..
T Consensus       199 lTia~gssV~Fwdaksf~~lKs~k~P--------------~nV~SASL~P------~k~~fVaGged~~~~kfDy~TgeE  258 (334)
T KOG0278|consen  199 LTIAYGSSVKFWDAKSFGLLKSYKMP--------------CNVESASLHP------KKEFFVAGGEDFKVYKFDYNTGEE  258 (334)
T ss_pred             EEEecCceeEEeccccccceeeccCc--------------cccccccccC------CCceEEecCcceEEEEEeccCCce
Confidence            77777889999999999999998854              7899999999      689999999999999999998643


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                      +                                     ..  -.++|.++|.++.|+   |+|...++|++||+|++|..
T Consensus       259 i-------------------------------------~~--~nkgh~gpVhcVrFS---PdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  259 I-------------------------------------GS--YNKGHFGPVHCVRFS---PDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             e-------------------------------------ee--cccCCCCceEEEEEC---CCCceeeccCCCceEEEEEe
Confidence            2                                     11  147899999999999   99999999999999999998


Q ss_pred             CCce
Q 017194          323 SRFQ  326 (375)
Q Consensus       323 ~~~~  326 (375)
                      ..++
T Consensus       297 ~~~~  300 (334)
T KOG0278|consen  297 TPGK  300 (334)
T ss_pred             cCCC
Confidence            8764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-36  Score=258.62  Aligned_cols=276  Identities=16%  Similarity=0.267  Sum_probs=230.7

Q ss_pred             eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc
Q 017194           54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR  133 (375)
Q Consensus        54 ~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (375)
                      ++..+..|..++|+|....++++-..|.|++||.+.+   ..+..+..|.++|..++|+|++.++++|++|-.|++|+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            4445678999999999999999999999999999854   5667778899999999999999999999999999999999


Q ss_pred             CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          134 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                      +.+++.++. +|-+.|+.+.|++.-++ +++++.|.+|+||+..+.+++..+. +            |...|.|..|+| 
T Consensus        82 ~rrclftL~-GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavlt-G------------HnHYVMcAqFhp-  145 (1202)
T KOG0292|consen   82 TRRCLFTLL-GHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLT-G------------HNHYVMCAQFHP-  145 (1202)
T ss_pred             cceehhhhc-cccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEEe-c------------CceEEEeeccCC-
Confidence            999999999 99999999999999995 9999999999999999999999987 4            678999999999 


Q ss_pred             ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194          214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  293 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  293 (375)
                           ...++++++-|.+|++||+..-+............       ..+.+    +..+..........+.+.||...|
T Consensus       146 -----tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~-------~~~~~----~~~dLfg~~DaVVK~VLEGHDRGV  209 (1202)
T KOG0292|consen  146 -----TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ-------MRGQQ----GNSDLFGQTDAVVKHVLEGHDRGV  209 (1202)
T ss_pred             -----ccceEEEecccceEEEEeecchhccCCCCCCchhh-------hhccc----cchhhcCCcCeeeeeeeccccccc
Confidence                 79999999999999999998644332222100000       00100    000111122334556889999999


Q ss_pred             EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +-++|+   |.-.++++|++|+.|++|.+...+.       ..+.+..+|.+.|.++.|+| ..+.++|.|+|++|+|||
T Consensus       210 NwaAfh---pTlpliVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  210 NWAAFH---PTLPLIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             ceEEec---CCcceEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEe
Confidence            999999   8888999999999999999987643       44567789999999999999 778999999999999999


Q ss_pred             cC
Q 017194          374 IS  375 (375)
Q Consensus       374 ~~  375 (375)
                      ++
T Consensus       279 m~  280 (1202)
T KOG0292|consen  279 MT  280 (1202)
T ss_pred             cc
Confidence            84

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=236.22  Aligned_cols=278  Identities=18%  Similarity=0.260  Sum_probs=234.9

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      .++|.+++|+|....-+|+.+.- .+.||+..+....+++.--...|.++.|..||++|++|...|.|+++|.++   ..
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r~  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---RV  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc---HH
Confidence            46899999999745446655543 699999998888887777788999999999999999999999999999653   35


Q ss_pred             ccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194           95 PLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                      .+..+..|+.++..+.|+|++ ..+++|++|+.+++||+.+......+. +|++.|++.+|+|..+.++++|+.||.|++
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRL  180 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEE
Confidence            667788899999999999965 567788899999999999888766788 999999999999988778999999999999


Q ss_pred             eeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          174 WDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       174 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      ||++.. ..+.++.              |..+|..+.+-|      .|.++++++.. .+++||+.++.           
T Consensus       181 ~DtR~~~~~v~eln--------------hg~pVe~vl~lp------sgs~iasAgGn-~vkVWDl~~G~-----------  228 (487)
T KOG0310|consen  181 WDTRSLTSRVVELN--------------HGCPVESVLALP------SGSLIASAGGN-SVKVWDLTTGG-----------  228 (487)
T ss_pred             EEeccCCceeEEec--------------CCCceeeEEEcC------CCCEEEEcCCC-eEEEEEecCCc-----------
Confidence            999987 4455554              668999999999      68999888765 89999999652           


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecc
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI  332 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  332 (375)
                                                  +.+..+..|...|+|+.+.   .++..|++|+-|+.+++||+.+.+      
T Consensus       229 ----------------------------qll~~~~~H~KtVTcL~l~---s~~~rLlS~sLD~~VKVfd~t~~K------  271 (487)
T KOG0310|consen  229 ----------------------------QLLTSMFNHNKTVTCLRLA---SDSTRLLSGSLDRHVKVFDTTNYK------  271 (487)
T ss_pred             ----------------------------eehhhhhcccceEEEEEee---cCCceEeecccccceEEEEccceE------
Confidence                                        3344555699999999999   899999999999999999988863      


Q ss_pred             hhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194          333 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  371 (375)
Q Consensus       333 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i  371 (375)
                          +.......++|.+++.+| +++.++.|..||.+.+
T Consensus       272 ----vv~s~~~~~pvLsiavs~-dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  272 ----VVHSWKYPGPVLSIAVSP-DDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ----EEEeeecccceeeEEecC-CCceEEEecccceeee
Confidence                224446789999999999 8899999999998754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.2e-35  Score=256.75  Aligned_cols=297  Identities=18%  Similarity=0.235  Sum_probs=241.7

Q ss_pred             CCCceeEEEEecCCCCEEEEeC--CCCcEEEEeccc------------CceeeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194           14 HKATATCCIASRDRPGFVASSG--EDGCICWFDLRS------------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~--~d~~i~iw~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      ++..|.+++.+|+ +..+|||+  .|+.++||+.+.            .+.+.+...|.+.|+|+.|+|||++||+|+.|
T Consensus        12 ~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   12 NEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             CCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            4566899999999 89999999  899999999652            12355667799999999999999999999999


Q ss_pred             CeEEEEECCC---------------CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC
Q 017194           80 KEVKSFDVHM---------------PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG  144 (375)
Q Consensus        80 ~~i~iwd~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  144 (375)
                      +.|.||+...               -+.++.+..+.+|...|..++|+|++.++++++.|++|.+||..+.+.+..++ +
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-G  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-c
Confidence            9999999872               01244566778899999999999999999999999999999999999999999 9


Q ss_pred             cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194          145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       145 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      |.+.|..+.|.|-|+ +|++-+.|++|++|++.+....+.+.-+.       ..+........+.|+|      ||.+|+
T Consensus       170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf-------~~~~~~T~f~RlSWSP------DG~~la  235 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPF-------EESPLTTFFLRLSWSP------DGHHLA  235 (942)
T ss_pred             ccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccch-------hhCCCcceeeecccCC------CcCeec
Confidence            999999999999999 79999999999999987766666654221       1111245678899999      899999


Q ss_pred             EEecC----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee
Q 017194          225 VAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  300 (375)
Q Consensus       225 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  300 (375)
                      +...-    ..+.|.+-.+                                        +..-..+-||..++.+++|+|
T Consensus       236 s~nA~n~~~~~~~IieR~t----------------------------------------Wk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGT----------------------------------------WKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             chhhccCCcceeEEEecCC----------------------------------------ceeeeeeecCCCceEEEEeCh
Confidence            87532    2344444432                                        355568889999999999996


Q ss_pred             c---CCCC-----------cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC
Q 017194          301 F---GERG-----------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       301 ~---~~~~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                      .   .+..           ..+|+|+.|++|.||.....+        +++....-....|.+++|+| ||-.|+.+|.|
T Consensus       276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--------Pl~vi~~lf~~SI~DmsWsp-dG~~LfacS~D  346 (942)
T KOG0973|consen  276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--------PLFVIHNLFNKSIVDMSWSP-DGFSLFACSLD  346 (942)
T ss_pred             HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--------chhhhhhhhcCceeeeeEcC-CCCeEEEEecC
Confidence            2   1111           167899999999999998774        44444455678999999999 99999999999


Q ss_pred             CeEEEEecC
Q 017194          367 KVVKVYSIS  375 (375)
Q Consensus       367 g~v~iw~~~  375 (375)
                      |+|.+..|+
T Consensus       347 GtV~~i~Fe  355 (942)
T KOG0973|consen  347 GTVALIHFE  355 (942)
T ss_pred             CeEEEEEcc
Confidence            999998875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-34  Score=216.28  Aligned_cols=291  Identities=14%  Similarity=0.158  Sum_probs=235.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC--CCe
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS--GKE   81 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--d~~   81 (375)
                      .++..+.|+...+.|+++.|+++ |..+++++.|.+++|||..+++..+++..+.-.+..++|......++.++.  |.+
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            34566777778899999999999 899999999999999999999999999988889999999887777887777  789


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      |+..++.+.   +.++-+.+|...|++++.+|-+..+++++.|++|++||++..++...+. .  ..-..++|.|+|- +
T Consensus        82 IryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~--~~~pi~AfDp~GL-i  154 (311)
T KOG1446|consen   82 IRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-L--SGRPIAAFDPEGL-I  154 (311)
T ss_pred             eEEEEeecC---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-c--CCCcceeECCCCc-E
Confidence            999999864   5667788999999999999999999999999999999999887766665 2  2334578999997 6


Q ss_pred             EEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          162 VISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      +|++.....|++||++.-  .+...+....+          .....+.|.|+|      +|+.++.++..+.+++.|.-+
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~----------~~~ew~~l~FS~------dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDN----------DEAEWTDLEFSP------DGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCC----------CccceeeeEEcC------CCCEEEEEeCCCcEEEEEccC
Confidence            777777779999999964  45555554311          245678999999      899999999999999999988


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc---cEEEEEEeecCCCCcEEEEecCCCe
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA---AASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      +..+.                                        ++..+..   --....|+   ||++++++|+.||+
T Consensus       219 G~~~~----------------------------------------tfs~~~~~~~~~~~a~ft---Pds~Fvl~gs~dg~  255 (311)
T KOG1446|consen  219 GTVKS----------------------------------------TFSGYPNAGNLPLSATFT---PDSKFVLSGSDDGT  255 (311)
T ss_pred             CcEee----------------------------------------eEeeccCCCCcceeEEEC---CCCcEEEEecCCCc
Confidence            64332                                        2222211   11456788   99999999999999


Q ss_pred             EEEEeCCCceeeeecchhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          317 VKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       317 i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |.+|+++++         +.+..+.+ +.+++.++.|+| .  +..-++.+..+.+|=
T Consensus       256 i~vw~~~tg---------~~v~~~~~~~~~~~~~~~fnP-~--~~mf~sa~s~l~fw~  301 (311)
T KOG1446|consen  256 IHVWNLETG---------KKVAVLRGPNGGPVSCVRFNP-R--YAMFVSASSNLVFWL  301 (311)
T ss_pred             EEEEEcCCC---------cEeeEecCCCCCCccccccCC-c--eeeeeecCceEEEEe
Confidence            999999999         44555555 788999999988 3  455555566788883

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.6e-35  Score=224.70  Aligned_cols=301  Identities=12%  Similarity=0.099  Sum_probs=249.3

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      ++..+..+.+|++.|+|+.|+.+ +.+||||+.+|.|+||+..++.....+...-..+.=+.|+|.+..|++|+.||.+.
T Consensus        95 ~ge~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen   95 TGEFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             CCcceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence            45677889999999999999999 89999999999999999999998888876677888899999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +|.+.++   ...+.+.+|..++++=.|.|+|+.++++..||+|++||+.+++++..+......+..++.++..+. .++
T Consensus       174 mw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~  249 (399)
T KOG0296|consen  174 MWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLT  249 (399)
T ss_pred             EEECCCc---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeE
Confidence            9999864   455667789999999999999999999999999999999999998888733345677888888887 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      .|+.++.+++-+..+++.+.......|..     ...+...+.++.+.|.   +..=.+.|+|+-||+|.|||+...+.+
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l-----~~~~e~~~esve~~~~---ss~lpL~A~G~vdG~i~iyD~a~~~~R  321 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPEL-----KPSQEELDESVESIPS---SSKLPLAACGSVDGTIAIYDLAASTLR  321 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccc-----cccchhhhhhhhhccc---ccccchhhcccccceEEEEecccchhh
Confidence            99999999999988888776655211111     1113344555655553   125678899999999999999875544


Q ss_pred             ecccccCCCCCCceeecccccceee---eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      ...  +....+..+.|-+ ..++++   .|....++.+..+++..+.+|...|.+++++   |+.++++|+|.|++.+||
T Consensus       322 ~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls---~~~~~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  322 HIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS---PQKRLVVTVSDDNTALVF  395 (399)
T ss_pred             eec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc---CCCcEEEEecCCCeEEEE
Confidence            433  3345577888888 455544   5778888899999999999999999999999   999999999999999999


Q ss_pred             eCC
Q 017194          321 DCS  323 (375)
Q Consensus       321 d~~  323 (375)
                      +..
T Consensus       396 ~v~  398 (399)
T KOG0296|consen  396 EVP  398 (399)
T ss_pred             ecC
Confidence            875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.2e-36  Score=218.26  Aligned_cols=246  Identities=20%  Similarity=0.243  Sum_probs=209.1

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCCCC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      -.+.+..++|++...+.+++++.||+++|||+.. ..++..++.|...|.++.|++- ++.+++++.|++|++|+..-  
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--  136 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC--
Confidence            3577999999999888999999999999999643 3468889999999999999974 55678889999999999874  


Q ss_pred             cccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           92 SWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                       ...+.++.+|...|....|+| ..+.+++++.|+++++||++..-....+. .|..++.++.|+....+++++|+.|+.
T Consensus       137 -~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  137 -PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             -CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCce
Confidence             466777889999999999999 57889999999999999998543333477 899999999999988889999999999


Q ss_pred             EEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc
Q 017194          171 LVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST  249 (375)
Q Consensus       171 i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  249 (375)
                      |+.||+++-+ ++.++. +            |...|..+.|+|.     ...+|++++.|=+++|||...+.        
T Consensus       215 vr~wDir~~r~pl~eL~-g------------h~~AVRkvk~Sph-----~~~lLaSasYDmT~riw~~~~~d--------  268 (311)
T KOG0277|consen  215 VRGWDIRNLRTPLFELN-G------------HGLAVRKVKFSPH-----HASLLASASYDMTVRIWDPERQD--------  268 (311)
T ss_pred             EEEEehhhccccceeec-C------------CceEEEEEecCcc-----hhhHhhhccccceEEecccccch--------
Confidence            9999999754 444553 4            6789999999996     67899999999999999998531        


Q ss_pred             CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                     .++.+..-|..-+..+.||++  +..++|+++.|+.++||+.
T Consensus       269 -------------------------------s~~e~~~~HtEFv~g~Dws~~--~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  269 -------------------------------SAIETVDHHTEFVCGLDWSLF--DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -------------------------------hhhhhhhccceEEeccccccc--cCceeeecccccceeeecc
Confidence                                           233466678999999999974  6679999999999999984

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-34  Score=239.15  Aligned_cols=272  Identities=19%  Similarity=0.275  Sum_probs=229.5

Q ss_pred             EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc
Q 017194           21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN  100 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  100 (375)
                      ++|+.  .+.||.|.. ..|.+|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.   +.+..+.
T Consensus       183 ldWss--~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~~  256 (484)
T KOG0305|consen  183 LDWSS--ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTLR  256 (484)
T ss_pred             hhccc--CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---ccccccc
Confidence            57774  357777764 47999999999876666666899999999999999999999999999999864   4444455


Q ss_pred             C-CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeee-EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          101 Y-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       101 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      + |...|-+++|.  +..+.+|+.++.|..+|++..+.... +. +|...|..+.|++++. ++++|+.|+.+.|||...
T Consensus       257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCC-eeccCCCccceEeccCCC
Confidence            5 88999999998  66899999999999999998766544 77 8999999999999999 799999999999999987


Q ss_pred             CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe--cCCcEEEEeCCCcceeecccccCCCCCCc
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGS  256 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  256 (375)
                      .++...+..             |...|.+++|+|.     ...+||+|+  .|+.|++||..++...             
T Consensus       333 ~~p~~~~~~-------------H~aAVKA~awcP~-----q~~lLAsGGGs~D~~i~fwn~~~g~~i-------------  381 (484)
T KOG0305|consen  333 PEPKFTFTE-------------HTAAVKALAWCPW-----QSGLLATGGGSADRCIKFWNTNTGARI-------------  381 (484)
T ss_pred             ccccEEEec-------------cceeeeEeeeCCC-----ccCceEEcCCCcccEEEEEEcCCCcEe-------------
Confidence            777777763             5789999999997     788999886  6899999999975322             


Q ss_pred             eeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe--cCCCeEEEEeCCCceeeeecchh
Q 017194          257 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQGVQTSINN  334 (375)
Q Consensus       257 ~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~  334 (375)
                                                 ..+ .....|..|.|+   +..+-|+++  -.++.|.||++.+.         
T Consensus       382 ---------------------------~~v-dtgsQVcsL~Ws---k~~kEi~sthG~s~n~i~lw~~ps~---------  421 (484)
T KOG0305|consen  382 ---------------------------DSV-DTGSQVCSLIWS---KKYKELLSTHGYSENQITLWKYPSM---------  421 (484)
T ss_pred             ---------------------------ccc-ccCCceeeEEEc---CCCCEEEEecCCCCCcEEEEecccc---------
Confidence                                       222 235789999999   666555543  34789999999997         


Q ss_pred             hhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          335 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       335 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +.+..+.+|..+|..++++| ||+.+++|+.|.++++|++
T Consensus       422 ~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  422 KLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNL  460 (484)
T ss_pred             ceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccc
Confidence            77889999999999999999 9999999999999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=202.85  Aligned_cols=297  Identities=14%  Similarity=0.157  Sum_probs=233.6

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------Cc-----e----eeEeeecCccEEEEEEeCCCCeEEEEcC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS------KD-----V----QLVTDVGNGPVTSLCFKSGNEDIIYVSS   78 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------~~-----~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~   78 (375)
                      ....|.+++|+|. |.+.|.|+...+.+|-....      +.     +    .+.-+.|.+.|+|.+|+|+|++|++|+.
T Consensus        31 dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   31 DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             chhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            4567999999999 88999999999998875431      11     1    1233468999999999999999999999


Q ss_pred             CCeEEEEECCCCCc--ccccccccCCCcceeEEEEcCC----CCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeE
Q 017194           79 GKEVKSFDVHMPAS--WRPLESYNYNKEEINQIVCNPK----SSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSS  151 (375)
Q Consensus        79 d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  151 (375)
                      |++|++.-.....+  ...-..+..|.+.|..++|..+    +..|++++ .|..|++-|..+++..+.+. +|.+-|.+
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghila  188 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILA  188 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEE
Confidence            99999987654322  2233346678999999999764    45566654 57778888998999999999 99999988


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV  231 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~  231 (375)
                      +- +-++- ++++|+.|.+|++||++-..++..+....      ...-.....|.++++.|      .|++|++|-.|..
T Consensus       189 ly-swn~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~------~~~glessavaav~vdp------sgrll~sg~~dss  254 (350)
T KOG0641|consen  189 LY-SWNGA-MFASGSQDKTIRFWDLRVNSCVNTLDNDF------HDGGLESSAVAAVAVDP------SGRLLASGHADSS  254 (350)
T ss_pred             EE-EecCc-EEEccCCCceEEEEeeeccceeeeccCcc------cCCCcccceeEEEEECC------CcceeeeccCCCc
Confidence            73 33444 89999999999999999888877765321      11112346789999998      7999999999999


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG  311 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~  311 (375)
                      ..+||++.+                                        +.++.+..|...|+++.|+   |...||+++
T Consensus       255 c~lydirg~----------------------------------------r~iq~f~phsadir~vrfs---p~a~yllt~  291 (350)
T KOG0641|consen  255 CMLYDIRGG----------------------------------------RMIQRFHPHSADIRCVRFS---PGAHYLLTC  291 (350)
T ss_pred             eEEEEeeCC----------------------------------------ceeeeeCCCccceeEEEeC---CCceEEEEe
Confidence            999999975                                        5566888999999999999   899999999


Q ss_pred             cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +.|..|++-|++..-..     .-.......|...+..+.|+| ..-.+++.+.|.++.+|-++
T Consensus       292 syd~~ikltdlqgdla~-----el~~~vv~ehkdk~i~~rwh~-~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  292 SYDMKIKLTDLQGDLAH-----ELPIMVVAEHKDKAIQCRWHP-QDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cccceEEEeecccchhh-----cCceEEEEeccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence            99999999999864110     011223456899999999999 44568889999999999764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.6e-34  Score=265.27  Aligned_cols=269  Identities=17%  Similarity=0.237  Sum_probs=217.2

Q ss_pred             CCcEEEEecccCceeeE-----eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC----cc-cccccccCCCcce
Q 017194           37 DGCICWFDLRSKDVQLV-----TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA----SW-RPLESYNYNKEEI  106 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~-----~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~-~~~~~~~~~~~~v  106 (375)
                      +|.+++|+..+......     +..|...|.+++|+|+++++++|+.|+.|++|++....    .. .+...+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            67788888876554333     33488999999999999999999999999999986421    10 1111222 24678


Q ss_pred             eEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee-CCCcEEEEeecCCeEEEeeCCCCCcceE
Q 017194          107 NQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKI  184 (375)
Q Consensus       107 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~  184 (375)
                      .+++|++ ++.+|++++.||.|++||+.+++.+..+. +|...|++++|+| ++. +|++|+.|+.|++||++++..+..
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEE
Confidence            9999987 47899999999999999999999999998 9999999999997 555 899999999999999999888877


Q ss_pred             EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194          185 VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI  264 (375)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~  264 (375)
                      +..              ...+.++.|++.     ++.++++|+.||.|++||+++..                       
T Consensus       614 ~~~--------------~~~v~~v~~~~~-----~g~~latgs~dg~I~iwD~~~~~-----------------------  651 (793)
T PLN00181        614 IKT--------------KANICCVQFPSE-----SGRSLAFGSADHKVYYYDLRNPK-----------------------  651 (793)
T ss_pred             Eec--------------CCCeEEEEEeCC-----CCCEEEEEeCCCeEEEEECCCCC-----------------------
Confidence            763              357889999653     79999999999999999998631                       


Q ss_pred             ceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc
Q 017194          265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  344 (375)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  344 (375)
                                      .....+.+|...|.++.|.    ++.+|++++.|+.|++||+......   .....+..+.+|.
T Consensus       652 ----------------~~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~---~~~~~l~~~~gh~  708 (793)
T PLN00181        652 ----------------LPLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISG---INETPLHSFMGHT  708 (793)
T ss_pred             ----------------ccceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCccc---cCCcceEEEcCCC
Confidence                            1223566899999999996    5779999999999999999753110   0013455677899


Q ss_pred             cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          345 KKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       345 ~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ..+..++|+| ++.+|++|+.|+.|++|+.
T Consensus       709 ~~i~~v~~s~-~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        709 NVKNFVGLSV-SDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCeeEEEEcC-CCCEEEEEeCCCEEEEEEC
Confidence            9999999999 8899999999999999984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=8.5e-35  Score=224.80  Aligned_cols=258  Identities=16%  Similarity=0.236  Sum_probs=217.6

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCC--CEEEEeCCCCcEEEEecccCce----eeEeeecCccEEEEEEeCCCCeEEEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYV   76 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~   76 (375)
                      ..|+..+++.||.++|.+++|...+.  ..|++++.|.++++|.++.++.    ++...+|...|.+++..++|..+++|
T Consensus       132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg  211 (423)
T KOG0313|consen  132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG  211 (423)
T ss_pred             cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence            35778889999999999988865422  2599999999999999987764    34445999999999999999999999


Q ss_pred             cCCCeEEEEECCCC----------------------CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194           77 SSGKEVKSFDVHMP----------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ  134 (375)
Q Consensus        77 ~~d~~i~iwd~~~~----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (375)
                      +.|..|.+|+..+.                      ....++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus       212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet  290 (423)
T KOG0313|consen  212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET  290 (423)
T ss_pred             cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence            99999999993321                      11234556778999999999998 66899999999999999999


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      +..+.++.  -...++++.++|... +|++|+.|..+++||.+++.  .+..--.+            |...|.++.|+|
T Consensus       291 g~~~~~~~--~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~g------------H~nwVssvkwsp  355 (423)
T KOG0313|consen  291 GGLKSTLT--TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIG------------HKNWVSSVKWSP  355 (423)
T ss_pred             ccceeeee--cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeec------------chhhhhheecCC
Confidence            99988887  467899999999887 89999999999999999764  22222234            788999999999


Q ss_pred             CccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCcc
Q 017194          213 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA  292 (375)
Q Consensus       213 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
                      .     +...|++++.|+++++||+++..                                       ..++.+.+|...
T Consensus       356 ~-----~~~~~~S~S~D~t~klWDvRS~k---------------------------------------~plydI~~h~DK  391 (423)
T KOG0313|consen  356 T-----NEFQLVSGSYDNTVKLWDVRSTK---------------------------------------APLYDIAGHNDK  391 (423)
T ss_pred             C-----CceEEEEEecCCeEEEEEeccCC---------------------------------------CcceeeccCCce
Confidence            7     78899999999999999999742                                       356788999999


Q ss_pred             EEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       293 v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      |.++.|.    ++.++++|+.|++|+|+....
T Consensus       392 vl~vdW~----~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  392 VLSVDWN----EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             EEEEecc----CCceEEeccCcceEEEecccc
Confidence            9999996    788999999999999997654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=246.81  Aligned_cols=274  Identities=21%  Similarity=0.324  Sum_probs=238.6

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE-eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      |...+.|..|.   ..++++++.+++|++|+..++..+.. +.+|.+.|.++++...+..|++|+.|.++++||..++.+
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence            56778888888   24899999999999999999998888 999999999999988788999999999999999988654


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                         ...+.+|...|.++...+  .++++|+.|.+|++|++.++..+..+. +|..+|+++..+  ++ ++++|+.|++|+
T Consensus       284 ---~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~-~lvsgs~d~~v~  354 (537)
T KOG0274|consen  284 ---THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EP-LLVSGSYDGTVK  354 (537)
T ss_pred             ---EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CC-EEEEEecCceEE
Confidence               455557899999888654  478889999999999999999999999 899999999998  44 899999999999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      +||+.++++++.+..             |...|.++.+.+      . ..+++|+.|+.|++||+++..           
T Consensus       355 VW~~~~~~cl~sl~g-------------H~~~V~sl~~~~------~-~~~~Sgs~D~~IkvWdl~~~~-----------  403 (537)
T KOG0274|consen  355 VWDPRTGKCLKSLSG-------------HTGRVYSLIVDS------E-NRLLSGSLDTTIKVWDLRTKR-----------  403 (537)
T ss_pred             EEEhhhceeeeeecC-------------CcceEEEEEecC------c-ceEEeeeeccceEeecCCchh-----------
Confidence            999999999999983             578999998854      2 999999999999999999741           


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecc
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI  332 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  332 (375)
                                                  +++..+.+|..-+..+.+     .+++|++++.|+.|++||..++       
T Consensus       404 ----------------------------~c~~tl~~h~~~v~~l~~-----~~~~Lvs~~aD~~Ik~WD~~~~-------  443 (537)
T KOG0274|consen  404 ----------------------------KCIHTLQGHTSLVSSLLL-----RDNFLVSSSADGTIKLWDAEEG-------  443 (537)
T ss_pred             ----------------------------hhhhhhcCCccccccccc-----ccceeEeccccccEEEeecccC-------
Confidence                                        466788999998877765     4689999999999999999998       


Q ss_pred             hhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          333 NNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       333 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                        +++..+.+ |...|..+++.   ...+++++.||.+++||++
T Consensus       444 --~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  444 --ECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             --ceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecc
Confidence              66666666 77889888875   3478999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.7e-33  Score=231.83  Aligned_cols=248  Identities=25%  Similarity=0.403  Sum_probs=216.2

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      +....+.+|...+.++.|+|+ ++++++++.||.|++|++.+++....+..|...+.++.|+++++++++++.++.+++|
T Consensus        42 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  120 (289)
T cd00200          42 ELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW  120 (289)
T ss_pred             CcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence            355678889999999999998 7899999999999999999988888888899999999999998888888889999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      |+.+++.   ...+..|...+.++.|+|++.++++++.++.|++||+++++.+..+. .|...+.++.|+|+++ .++++
T Consensus       121 ~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~  195 (289)
T cd00200         121 DVETGKC---LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGE-KLLSS  195 (289)
T ss_pred             ECCCcEE---EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcC-EEEEe
Confidence            9986543   33444678899999999999899988889999999999888888898 8988999999999997 68888


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.++.|++||++.++.+..+..             +...+.++.++|      ++.++++++.+|.|++||+.+.     
T Consensus       196 ~~~~~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~~~------~~~~~~~~~~~~~i~i~~~~~~-----  251 (289)
T cd00200         196 SSDGTIKLWDLSTGKCLGTLRG-------------HENGVNSVAFSP------DGYLLASGSEDGTIRVWDLRTG-----  251 (289)
T ss_pred             cCCCcEEEEECCCCceecchhh-------------cCCceEEEEEcC------CCcEEEEEcCCCcEEEEEcCCc-----
Confidence            8899999999998877776642             356899999998      6888888888999999999863     


Q ss_pred             ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                         .....+..|...+.+++|+   +++++|++++.||.|++|+
T Consensus       252 -----------------------------------~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 -----------------------------------ECVQTLSGHTNSVTSLAWS---PDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -----------------------------------eeEEEccccCCcEEEEEEC---CCCCEEEEecCCCeEEecC
Confidence                                               3334556788899999999   8999999999999999996

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-35  Score=221.56  Aligned_cols=299  Identities=16%  Similarity=0.187  Sum_probs=246.5

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ..++.|.||++.|+.++.... ...+.+++.|.+-+||.++++.++..+.+|.+.|+++.|++.+.++++++.|++..||
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             eehhhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            346778899999999998876 6799999999999999999999999999999999999999999999999999999999


Q ss_pred             ECC----CC---------------------------------CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           86 DVH----MP---------------------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        86 d~~----~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      ...    .+                                 ....++..+.+|...|.+..|...++.+++++.|.+..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            721    10                                 01123445667888999999999999999999999999


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeE
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                      +||+++++.+..+. +|....+.++-+|..+ ++++.+.|.+.++||.+..-. +..++ +            |...|++
T Consensus       298 lwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQ-G------------HtdtVTS  362 (481)
T KOG0300|consen  298 LWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQ-G------------HTDTVTS  362 (481)
T ss_pred             eeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeec-c------------cccceeE
Confidence            99999999999999 9999999999999988 899999999999999984322 23333 4            6789999


Q ss_pred             EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec
Q 017194          208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG  287 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~  287 (375)
                      +.|..       +..+++|+.|.+|++||+++.+.+                                       +.++.
T Consensus       363 ~vF~~-------dd~vVSgSDDrTvKvWdLrNMRsp---------------------------------------lATIR  396 (481)
T KOG0300|consen  363 VVFNT-------DDRVVSGSDDRTVKVWDLRNMRSP---------------------------------------LATIR  396 (481)
T ss_pred             EEEec-------CCceeecCCCceEEEeeeccccCc---------------------------------------ceeee
Confidence            99985       788999999999999999975322                                       22332


Q ss_pred             CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCC-CCCcEEEeeCC
Q 017194          288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT-ESENLVVCDTS  366 (375)
Q Consensus       288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d  366 (375)
                      . ..+++.++++   ..+..|+.--.+..|++||++......     -+.....+|..-|.|++|... --..|++|+.|
T Consensus       397 t-dS~~NRvavs---~g~~iIAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFD  467 (481)
T KOG0300|consen  397 T-DSPANRVAVS---KGHPIIAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD  467 (481)
T ss_pred             c-CCccceeEee---cCCceEEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeeccccCccccccccccc
Confidence            2 5678999998   777789988999999999998863210     111234679999999999741 12458999999


Q ss_pred             CeEEEEecC
Q 017194          367 KVVKVYSIS  375 (375)
Q Consensus       367 g~v~iw~~~  375 (375)
                      ..+.=|+++
T Consensus       468 R~v~gW~in  476 (481)
T KOG0300|consen  468 RMVAGWKIN  476 (481)
T ss_pred             ceeeeeEec
Confidence            999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=235.54  Aligned_cols=255  Identities=13%  Similarity=0.156  Sum_probs=218.1

Q ss_pred             ceeeEeeecCccEEEEEEeC-CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcE
Q 017194           49 DVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV  127 (375)
Q Consensus        49 ~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (375)
                      +.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++..  ....+.++.+|..+|.+++|+++|..+++++-|+.+
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            34778889999999999999 888999999999999999986  357888999999999999999999999999999999


Q ss_pred             EEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194          128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                      ++||+++|+++..+.  ....++++.|+|++..+|++|+.|+.|+.||+++++.++.+..             |-..|..
T Consensus       283 KlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-------------hLg~i~~  347 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-------------HLGAILD  347 (503)
T ss_pred             eeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-------------hhhheee
Confidence            999999999999998  5668899999999966999999999999999999998888763             4678999


Q ss_pred             EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec
Q 017194          208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG  287 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~  287 (375)
                      +.|-+      +++.+++.+.|+.++||+.+.+...                                     +.  ...
T Consensus       348 i~F~~------~g~rFissSDdks~riWe~~~~v~i-------------------------------------k~--i~~  382 (503)
T KOG0282|consen  348 ITFVD------EGRRFISSSDDKSVRIWENRIPVPI-------------------------------------KN--IAD  382 (503)
T ss_pred             eEEcc------CCceEeeeccCccEEEEEcCCCccc-------------------------------------hh--hcc
Confidence            99999      7999999999999999999874211                                     11  122


Q ss_pred             CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc--ceeeeeecCCCCCcEEEeeC
Q 017194          288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDT  365 (375)
Q Consensus       288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~  365 (375)
                      .+.....++..+   |+++++++=+.|+.|.++.+......      ..-+.+.+|..  --..+.|+| ||++|++|+.
T Consensus       383 ~~~hsmP~~~~~---P~~~~~~aQs~dN~i~ifs~~~~~r~------nkkK~feGh~vaGys~~v~fSp-DG~~l~SGds  452 (503)
T KOG0282|consen  383 PEMHTMPCLTLH---PNGKWFAAQSMDNYIAIFSTVPPFRL------NKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDS  452 (503)
T ss_pred             hhhccCcceecC---CCCCeehhhccCceEEEEeccccccc------CHhhhhcceeccCceeeEEEcC-CCCeEEeecC
Confidence            223456677888   99999999999999999997765332      44456777764  456678999 9999999999


Q ss_pred             CCeEEEEecC
Q 017194          366 SKVVKVYSIS  375 (375)
Q Consensus       366 dg~v~iw~~~  375 (375)
                      ||.+.+||.+
T Consensus       453 dG~v~~wdwk  462 (503)
T KOG0282|consen  453 DGKVNFWDWK  462 (503)
T ss_pred             CccEEEeech
Confidence            9999999963

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.1e-33  Score=237.65  Aligned_cols=269  Identities=12%  Similarity=0.104  Sum_probs=201.7

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-------------eEeeecCccEEEEEEeC-CCCeEEEEcCCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-------------LVTDVGNGPVTSLCFKS-GNEDIIYVSSGK   80 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------------~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~   80 (375)
                      -..|+....+++ +..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++++.|+
T Consensus        20 ~~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         20 FLNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             eeccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            345666666666 556677777777777775433221             24678999999999999 788999999999


Q ss_pred             eEEEEECCCCCc----ccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           81 EVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        81 ~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                      +|++||+.++..    ...+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. +|...|.+++|+
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~s  177 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWN  177 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEE
Confidence            999999976432    23456778899999999999975 689999999999999999999988998 899999999999


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe----cCCc
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK----GDGV  231 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~----~dg~  231 (375)
                      |++. +|++++.|++|++||+++++.+..+..+            .......+.|.+      ++..+++++    .|+.
T Consensus       178 pdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H------------~~~~~~~~~w~~------~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        178 LDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAH------------ASAKSQRCLWAK------RKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             CCCC-EEEEecCCCEEEEEECCCCcEEEEEecC------------CCCcceEEEEcC------CCCeEEEEecCCCCCCe
Confidence            9998 8999999999999999999887777633            122344567777      455665543    4789


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec-CCCccEEEEEEeecCCCCcEEEE
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLIS  310 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~l~s  310 (375)
                      |++||+++....                                       +.... .+...+....|+   +++++|++
T Consensus       239 VklWDlr~~~~p---------------------------------------~~~~~~d~~~~~~~~~~d---~d~~~L~l  276 (493)
T PTZ00421        239 IMLWDTRKMASP---------------------------------------YSTVDLDQSSALFIPFFD---EDTNLLYI  276 (493)
T ss_pred             EEEEeCCCCCCc---------------------------------------eeEeccCCCCceEEEEEc---CCCCEEEE
Confidence            999999864211                                       11111 123345556777   89999988


Q ss_pred             ec-CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC
Q 017194          311 GG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       311 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  354 (375)
                      ++ .|+.|++||+.+++...        .....+..++..++|.|
T Consensus       277 ggkgDg~Iriwdl~~~~~~~--------~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        277 GSKGEGNIRCFELMNERLTF--------CSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             EEeCCCeEEEEEeeCCceEE--------EeeccCCCCCcceEecc
Confidence            87 49999999999874221        11123455677788877

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-34  Score=234.85  Aligned_cols=244  Identities=18%  Similarity=0.245  Sum_probs=218.3

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      .+++.|+++.|+++ |.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|.  +..+.+|+.++.|..+|++..+
T Consensus       215 ~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  215 FGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             cCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence            34889999999999 89999999999999999999999999998 99999999998  5678999999999999999754


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee--cCC
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG--LDS  169 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~  169 (375)
                      ....  .+.+|...|..+.|++|++++|+|+.|+.+.|||....+++..+. .|...|.+++|+|....+||+|+  .|+
T Consensus       292 ~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  292 HVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             hhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCccc
Confidence            3333  478899999999999999999999999999999998888888888 99999999999998877899875  699


Q ss_pred             eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE--ecCCcEEEEeCCCcceeeccc
Q 017194          170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA--KGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      .|++||..+++.+..+..+              ..|.+|.|++      ..+.|+++  ..++.|.||+..+.       
T Consensus       369 ~i~fwn~~~g~~i~~vdtg--------------sQVcsL~Wsk------~~kEi~sthG~s~n~i~lw~~ps~-------  421 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVDTG--------------SQVCSLIWSK------KYKELLSTHGYSENQITLWKYPSM-------  421 (484)
T ss_pred             EEEEEEcCCCcEecccccC--------------CceeeEEEcC------CCCEEEEecCCCCCcEEEEecccc-------
Confidence            9999999999999888755              8999999999      56666554  46779999999863       


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                                       ..+..+.+|...|..++++   |||..+++|+.|.++++|++-..
T Consensus       422 ---------------------------------~~~~~l~gH~~RVl~la~S---Pdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  422 ---------------------------------KLVAELLGHTSRVLYLALS---PDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ---------------------------------ceeeeecCCcceeEEEEEC---CCCCEEEEecccCcEEeccccCC
Confidence                                             4556889999999999999   99999999999999999998874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-34  Score=210.91  Aligned_cols=268  Identities=21%  Similarity=0.205  Sum_probs=213.5

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---   79 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---   79 (375)
                      ..++.+.++.||++.|+|++.+.+ .+.+++|+.|.+++|||+++|+++..++. ..+|..+.|+++|++++....+   
T Consensus        40 ~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg  117 (327)
T KOG0643|consen   40 LNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMG  117 (327)
T ss_pred             cCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcC
Confidence            367888999999999999999998 89999999999999999999999999984 7899999999999987776543   


Q ss_pred             --CeEEEEECCCCC----cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEE
Q 017194           80 --KEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSV  152 (375)
Q Consensus        80 --~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~  152 (375)
                        +.|.++|++...    ...++..+..+...++.+.|.|-+++|++|.+||.|.+||+++++. +..-+ .|...|+.|
T Consensus       118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~  196 (327)
T KOG0643|consen  118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDL  196 (327)
T ss_pred             cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-hhccccccc
Confidence              589999998433    2344555556688999999999999999999999999999999854 55555 899999999


Q ss_pred             EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194          153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  232 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i  232 (375)
                      +++++.. ++++++.|.+-++||.++-+.++++...              .++++.+++|      ....++.|+....-
T Consensus       197 q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te--------------~PvN~aaisP------~~d~VilgGGqeA~  255 (327)
T KOG0643|consen  197 QFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTE--------------RPVNTAAISP------LLDHVILGGGQEAM  255 (327)
T ss_pred             cccCCcc-eEEecccCccceeeeccceeeEEEeeec--------------ccccceeccc------ccceEEecCCceee
Confidence            9999998 7999999999999999999999999844              7899999999      45566655433221


Q ss_pred             EEE--eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE
Q 017194          233 DVI--NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS  310 (375)
Q Consensus       233 ~i~--d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s  310 (375)
                      -+=  +.+.++...++..                            ....+.+..+++|-++|++++|+   |+|+..++
T Consensus       256 dVTTT~~r~GKFEArFyh----------------------------~i~eEEigrvkGHFGPINsvAfh---PdGksYsS  304 (327)
T KOG0643|consen  256 DVTTTSTRAGKFEARFYH----------------------------LIFEEEIGRVKGHFGPINSVAFH---PDGKSYSS  304 (327)
T ss_pred             eeeeecccccchhhhHHH----------------------------HHHHHHhccccccccCcceeEEC---CCCccccc
Confidence            111  1111111000000                            00112344788999999999999   99999999


Q ss_pred             ecCCCeEEEEeCCCc
Q 017194          311 GGNDKLVKVWDCSRF  325 (375)
Q Consensus       311 ~~~dg~i~iwd~~~~  325 (375)
                      |++||.|++.-....
T Consensus       305 GGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  305 GGEDGYVRLHHFDSN  319 (327)
T ss_pred             CCCCceEEEEEeccc
Confidence            999999999876653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.6e-34  Score=213.96  Aligned_cols=248  Identities=15%  Similarity=0.222  Sum_probs=211.9

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC--eEEEEcCCCeEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVK   83 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~d~~i~   83 (375)
                      .++..+..|.++|++++.+   +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.
T Consensus        34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            3467788999999999996   78999999999999999999999999999999999999998764  899999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +|+...   +..+..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-..++  -....+.+.|+|.|. .|+
T Consensus       111 iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~Gd-~F~  184 (362)
T KOG0294|consen  111 IWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQGD-HFV  184 (362)
T ss_pred             EEEcCC---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCCCC-EEE
Confidence            999884   78888899999999999999999999999999999999999887766555  233445599999999 577


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      .+..+ .|-+|.+.+.+....+..              +..+.++.|.       ++..|++|..|+.|.+||..+.   
T Consensus       185 v~~~~-~i~i~q~d~A~v~~~i~~--------------~~r~l~~~~l-------~~~~L~vG~d~~~i~~~D~ds~---  239 (362)
T KOG0294|consen  185 VSGRN-KIDIYQLDNASVFREIEN--------------PKRILCATFL-------DGSELLVGGDNEWISLKDTDSD---  239 (362)
T ss_pred             EEecc-EEEEEecccHhHhhhhhc--------------cccceeeeec-------CCceEEEecCCceEEEeccCCC---
Confidence            66655 689999998887777662              3567777776       5899999999999999999863   


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                           .+...+.+|...|..+.+- ..|++.||+|++.||.|+|||++
T Consensus       240 -------------------------------------~~~~~~~AH~~RVK~i~~~-~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  240 -------------------------------------TPLTEFLAHENRVKDIASY-TNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             -------------------------------------ccceeeecchhheeeeEEE-ecCCceEEEEeccCceEEEEEcc
Confidence                                                 4456888999999999842 11678999999999999999998


Q ss_pred             Cc
Q 017194          324 RF  325 (375)
Q Consensus       324 ~~  325 (375)
                      ..
T Consensus       282 ~~  283 (362)
T KOG0294|consen  282 ME  283 (362)
T ss_pred             cc
Confidence            76

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.8e-33  Score=220.12  Aligned_cols=285  Identities=16%  Similarity=0.195  Sum_probs=240.8

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      ..|.++...|. ...+++|+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||......   .
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~  295 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---E  295 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---C
Confidence            46888888887 6899999999999999999999999999999999999999999999999999999999987644   3


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      ......|..+|+.+..+|.|.||++++.|++..+.|++++..+..... ...-.+++.+|+|||- +|.+|..|+.|++|
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiw  374 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIW  374 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEE
Confidence            344556799999999999999999999999999999999988877661 1234589999999998 89999999999999


Q ss_pred             eCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCC
Q 017194          175 DFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK  254 (375)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  254 (375)
                      |+.++.....|..             |.++|..++|+.      +|.+|++++.|+.|++||++..+.            
T Consensus       375 dlks~~~~a~Fpg-------------ht~~vk~i~FsE------NGY~Lat~add~~V~lwDLRKl~n------------  423 (506)
T KOG0289|consen  375 DLKSQTNVAKFPG-------------HTGPVKAISFSE------NGYWLATAADDGSVKLWDLRKLKN------------  423 (506)
T ss_pred             EcCCccccccCCC-------------CCCceeEEEecc------CceEEEEEecCCeEEEEEehhhcc------------
Confidence            9999887777763             689999999998      899999999999999999996421            


Q ss_pred             CceeecccccceeeeeeeecCCcceeEeeeeec-CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecch
Q 017194          255 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN  333 (375)
Q Consensus       255 ~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  333 (375)
                                                  +.++. ....++.++.|.   +.|.+|+.++.|=.|++++-.+.+-      
T Consensus       424 ----------------------------~kt~~l~~~~~v~s~~fD---~SGt~L~~~g~~l~Vy~~~k~~k~W------  466 (506)
T KOG0289|consen  424 ----------------------------FKTIQLDEKKEVNSLSFD---QSGTYLGIAGSDLQVYICKKKTKSW------  466 (506)
T ss_pred             ----------------------------cceeeccccccceeEEEc---CCCCeEEeecceeEEEEEecccccc------
Confidence                                        11111 112378999999   8999999998887777776544322      


Q ss_pred             hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          334 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                       ..+..+..|.+..+++.|.. ..+++++++.|..++++.++
T Consensus       467 -~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~~  506 (506)
T KOG0289|consen  467 -TEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYALT  506 (506)
T ss_pred             -eeeehhhhcccccceeeecc-cceEEeeccchhheEEeecC
Confidence             44566777888899999987 77899999999999998764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-34  Score=223.08  Aligned_cols=251  Identities=15%  Similarity=0.187  Sum_probs=217.1

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII  130 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (375)
                      .+.+..|.+.|.-+.|+++|++||+++.|.+..+|++......+...++.+|..+|..+.|+||.+++++++.+..+.+|
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            56677899999999999999999999999999999988766678888899999999999999999999999999999999


Q ss_pred             eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                      |+.++.....+..++...+.+.+|.|||. .+++|+.|+++..||++ |.....++..            ....|..+++
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlD-gn~~~~W~gv------------r~~~v~dlai  362 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLD-GNILGNWEGV------------RDPKVHDLAI  362 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCC-cchhhccccc------------ccceeEEEEE
Confidence            99999998888755668999999999998 79999999999999987 4555555432            2356999999


Q ss_pred             cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194          211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  290 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
                      ++      ||+++++.+.|..|++|+..+...                                         ..+....
T Consensus       363 t~------Dgk~vl~v~~d~~i~l~~~e~~~d-----------------------------------------r~lise~  395 (519)
T KOG0293|consen  363 TY------DGKYVLLVTVDKKIRLYNREARVD-----------------------------------------RGLISEE  395 (519)
T ss_pred             cC------CCcEEEEEecccceeeechhhhhh-----------------------------------------hcccccc
Confidence            99      899999999999999999886311                                         1122335


Q ss_pred             ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccc--eeeeeecCCCCCcEEEeeCCCe
Q 017194          291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                      .+|++..+|   .|++++++.=.+..|++||++..         .+++.+.||...  +..-||-..+..++++|++|+.
T Consensus       396 ~~its~~iS---~d~k~~LvnL~~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k  463 (519)
T KOG0293|consen  396 QPITSFSIS---KDGKLALVNLQDQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK  463 (519)
T ss_pred             CceeEEEEc---CCCcEEEEEcccCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence            789999999   99999999999999999999987         888999998764  5556777767789999999999


Q ss_pred             EEEEec
Q 017194          369 VKVYSI  374 (375)
Q Consensus       369 v~iw~~  374 (375)
                      |+||+.
T Consensus       464 vyIWhr  469 (519)
T KOG0293|consen  464 VYIWHR  469 (519)
T ss_pred             EEEEEc
Confidence            999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.1e-33  Score=227.06  Aligned_cols=294  Identities=14%  Similarity=0.139  Sum_probs=225.7

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce----eeEe-eecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      .+|++|+..|.++++.|. |-.|++|+.|.+|++||+.....    .+.+ ......|.+++|++.|..|++.+.....+
T Consensus       161 i~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             EeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            468899999999999999 89999999999999999975432    2222 23467899999999999999999889999


Q ss_pred             EEECCCCC---------cccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCce-eeeeEec----Ccccc
Q 017194           84 SFDVHMPA---------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-LYKSLRA----GHSSI  148 (375)
Q Consensus        84 iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~----~~~~~  148 (375)
                      ++|-....         .+.-+..-++|...+++.+|+|.. ..+++++.||++++||+...+ .++.++.    +..-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            99976322         123344556899999999999965 568899999999999998543 3344431    33457


Q ss_pred             eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCC--CceeEEeecCCccccCCCCEEE
Q 017194          149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNP--AFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      ++.++|+++++ .||+|..||.|.+|+......  ...+.-.            |.  ..|++|.|++      +|++|+
T Consensus       320 ~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A------------H~~g~~Itsi~FS~------dg~~Ll  380 (641)
T KOG0772|consen  320 VTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDA------------HLPGQDITSISFSY------DGNYLL  380 (641)
T ss_pred             ceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeec------------cCCCCceeEEEecc------ccchhh
Confidence            89999999999 699999999999999865432  2233222            33  3899999999      899999


Q ss_pred             EEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCC
Q 017194          225 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  304 (375)
Q Consensus       225 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  304 (375)
                      +-+.|+.+++||++..+.......                                    -+. ...+-+.++||   |+
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~t------------------------------------gL~-t~~~~tdc~FS---Pd  420 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRT------------------------------------GLP-TPFPGTDCCFS---PD  420 (641)
T ss_pred             hccCCCceeeeeccccccchhhhc------------------------------------CCC-ccCCCCccccC---CC
Confidence            999999999999997543322111                                    010 12344667899   99


Q ss_pred             CcEEEEecC------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          305 GKYLISGGN------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       305 ~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      .++|++|..      .|.+.+||..+.         ..+..+.-....|..+.|+| .-+.|+.++.||.+++|
T Consensus       421 ~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  421 DKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEE
Confidence            999999864      578999999998         44444444577899999999 66678888899999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6e-33  Score=219.77  Aligned_cols=300  Identities=16%  Similarity=0.191  Sum_probs=235.9

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee----eE-------------e-eecCccEEEEEEeCC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ----LV-------------T-DVGNGPVTSLCFKSG   69 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~----~~-------------~-~~~~~~v~~l~~~~~   69 (375)
                      ...+..|.-+|.||+++|+ ..+.++++.+++|.=|++.+++..    ..             - +.|...+.+++.++|
T Consensus       135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            5667789999999999999 799999999999999999887632    11             1 267888999999999


Q ss_pred             CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce
Q 017194           70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC  149 (375)
Q Consensus        70 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  149 (375)
                      |++|++|+.|..|.||+.++   ...++.+.+|.+.|.+++|-.....+++++.|+.|++|+++....+.++. +|++.|
T Consensus       214 gkylatgg~d~~v~Iw~~~t---~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v  289 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDT---LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGV  289 (479)
T ss_pred             CcEEEecCCCceEEEecCcc---cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccce
Confidence            99999999999999999997   46666788899999999999888899999999999999999999999999 999999


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      .+|.-...++ .+-+|+.|+++++|++....  +.+..+            +...+-+++|-       +...+++|+.+
T Consensus       290 ~~IdaL~reR-~vtVGgrDrT~rlwKi~ees--qlifrg------------~~~sidcv~~I-------n~~HfvsGSdn  347 (479)
T KOG0299|consen  290 LGIDALSRER-CVTVGGRDRTVRLWKIPEES--QLIFRG------------GEGSIDCVAFI-------NDEHFVSGSDN  347 (479)
T ss_pred             eeechhcccc-eEEeccccceeEEEeccccc--eeeeeC------------CCCCeeeEEEe-------cccceeeccCC
Confidence            9998888776 56666699999999995432  222223            45789999998       58899999999


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI  309 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~  309 (375)
                      |.|.+|++.+.+.++.....+....                           .. ....+...|++++..   |...++|
T Consensus       348 G~IaLWs~~KKkplf~~~~AHgv~~---------------------------~~-~~~~~~~Witsla~i---~~sdL~a  396 (479)
T KOG0299|consen  348 GSIALWSLLKKKPLFTSRLAHGVIP---------------------------EL-DPVNGNFWITSLAVI---PGSDLLA  396 (479)
T ss_pred             ceEEEeeecccCceeEeeccccccC---------------------------Cc-cccccccceeeeEec---ccCceEE
Confidence            9999999998765554332211100                           00 111233689999999   8889999


Q ss_pred             EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe-eCCCeEEEE
Q 017194          310 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVY  372 (375)
Q Consensus       310 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~iw  372 (375)
                      +|+.+|.|++|.+..+....     .++..+ ...+.|+.++|++ +|+.|++| +....+--|
T Consensus       397 sGS~~G~vrLW~i~~g~r~i-----~~l~~l-s~~GfVNsl~f~~-sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  397 SGSWSGCVRLWKIEDGLRAI-----NLLYSL-SLVGFVNSLAFSN-SGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             ecCCCCceEEEEecCCcccc-----ceeeec-ccccEEEEEEEcc-CCCEEEEeccccccccee
Confidence            99999999999999873210     222222 3678899999999 88866654 444444333

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=3.7e-33  Score=219.44  Aligned_cols=256  Identities=17%  Similarity=0.226  Sum_probs=224.8

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +.+.+..|+||.-.|+.+.++|+ ...+++++.|..|+||.............|..+|+.+..+|.|.||++++.|+...
T Consensus       250 s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~  328 (506)
T KOG0289|consen  250 SNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA  328 (506)
T ss_pred             hhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence            45567889999999999999999 88999999999999999988888888889999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +.|++++..+.....- ...-.+++.+|+|||..|.+|..||.|++||+.++..+..|. +|.++|..++|+.+|- .|+
T Consensus       329 Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY-~La  405 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGY-WLA  405 (506)
T ss_pred             EEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCce-EEE
Confidence            9999988765444332 224568999999999999999999999999999999999999 9999999999999986 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      ++++|+.|++||+|..+..+++...            ....+.++.|.+      .|.+|+.++.+=.|++++-.+    
T Consensus       406 t~add~~V~lwDLRKl~n~kt~~l~------------~~~~v~s~~fD~------SGt~L~~~g~~l~Vy~~~k~~----  463 (506)
T KOG0289|consen  406 TAADDGSVKLWDLRKLKNFKTIQLD------------EKKEVNSLSFDQ------SGTYLGIAGSDLQVYICKKKT----  463 (506)
T ss_pred             EEecCCeEEEEEehhhcccceeecc------------ccccceeEEEcC------CCCeEEeecceeEEEEEeccc----
Confidence            9999999999999999988888866            345699999988      799999998876666666543    


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                        ..+.++..+..|.+..+.+.|.   ...+++++++.|..++++.+
T Consensus       464 ----------------------------------k~W~~~~~~~~~sg~st~v~Fg---~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  464 ----------------------------------KSWTEIKELADHSGLSTGVRFG---EHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ----------------------------------ccceeeehhhhcccccceeeec---ccceEEeeccchhheEEeec
Confidence                                              3456777888888899999998   88899999999999988754

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6e-32  Score=231.56  Aligned_cols=230  Identities=15%  Similarity=0.202  Sum_probs=182.5

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------eeeEeeecCccEEEEEEeCCC-CeEEEEcCCCe
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKE   81 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~   81 (375)
                      .+.+|.+.|++++|+|.++++|++|+.|++|++||+.++.       .+..+.+|...|.+++|+|++ +.|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            5889999999999999437899999999999999997652       467788999999999999985 68999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc-eeEEEEeeCCCc
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-CSSVQFIPWKPW  160 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  160 (375)
                      |++||+++++   .+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|... +..+.|.+++. 
T Consensus       150 VrIWDl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~-  224 (493)
T PTZ00421        150 VNVWDVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKD-  224 (493)
T ss_pred             EEEEECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCC-
Confidence            9999999764   344556788999999999999999999999999999999999988888 88764 45678888877 


Q ss_pred             EEEEee----cCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEE
Q 017194          161 EVISGG----LDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDV  234 (375)
Q Consensus       161 ~l~~~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i  234 (375)
                      .+++++    .|+.|++||+++... +......            ....+....|++      ++++|++++ .|+.|++
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d------------~~~~~~~~~~d~------d~~~L~lggkgDg~Iri  286 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD------------QSSALFIPFFDE------DTNLLYIGSKGEGNIRC  286 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCCceeEeccC------------CCCceEEEEEcC------CCCEEEEEEeCCCeEEE
Confidence            465543    479999999987543 3333222            123455566777      788888887 5999999


Q ss_pred             EeCCCcceeecccccCCCCCCceeeccc
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~  262 (375)
                      ||+.++............+...+++.|.
T Consensus       287 wdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        287 FELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEeeCCceEEEeeccCCCCCcceEeccc
Confidence            9999877655444434445556666654

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=8.7e-32  Score=231.56  Aligned_cols=252  Identities=12%  Similarity=0.039  Sum_probs=191.0

Q ss_pred             eCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCCCCc-c----cccccccCCCccee
Q 017194           34 SGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPAS-W----RPLESYNYNKEEIN  107 (375)
Q Consensus        34 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-~----~~~~~~~~~~~~v~  107 (375)
                      |+.++.|++|+......+..+.+|...|.+++|+|+ +++|++|+.|++|++||+.++.. .    ..+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999998887788889999999999999997 78999999999999999976432 1    23345678899999


Q ss_pred             EEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194          108 QIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       108 ~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  186 (375)
                      +++|+|++.. |++++.|+.|++||+++++.+..+.  |...|.+++|+|+|. +|++++.|+.|++||+++++.+..+.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEe
Confidence            9999998876 5688999999999999998877776  567899999999998 78999999999999999998887776


Q ss_pred             cCCCCCCCCCCcccCCCceeE-----EeecCCccccCCCCEEEEEecCC----cEEEEeCCCcceeecccccCCCCCCce
Q 017194          187 FGLPENNGNAGQCYNPAFVHA-----IAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPLKGSQ  257 (375)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      .+             ...+..     ..|++      ++.++++++.++    .|++||++....+              
T Consensus       207 gH-------------~g~~~s~~v~~~~fs~------d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--------------  253 (568)
T PTZ00420        207 IH-------------DGGKNTKNIWIDGLGG------DDNYILSTGFSKNNMREMKLWDLKNTTSA--------------  253 (568)
T ss_pred             cc-------------cCCceeEEEEeeeEcC------CCCEEEEEEcCCCCccEEEEEECCCCCCc--------------
Confidence            33             333322     23445      688888877664    7999999952111              


Q ss_pred             eecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhh
Q 017194          258 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL  337 (375)
Q Consensus       258 ~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  337 (375)
                                             .....+..+...+......   ++|.++++|+.|+.|++|++..+..       ..+
T Consensus       254 -----------------------l~~~~ld~~~~~L~p~~D~---~tg~l~lsGkGD~tIr~~e~~~~~~-------~~l  300 (568)
T PTZ00420        254 -----------------------LVTMSIDNASAPLIPHYDE---STGLIYLIGKGDGNCRYYQHSLGSI-------RKV  300 (568)
T ss_pred             -----------------------eEEEEecCCccceEEeeeC---CCCCEEEEEECCCeEEEEEccCCcE-------Eee
Confidence                                   1111233333333333333   6789999999999999999987632       122


Q ss_pred             hhhcccccceeeeeecCC
Q 017194          338 IKNINLNKKVNWLCTTPT  355 (375)
Q Consensus       338 ~~~~~~~~~v~~~~~~~~  355 (375)
                      .. ..+..++.+++|.|.
T Consensus       301 ~~-~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        301 NE-YKSCSPFRSFGFLPK  317 (568)
T ss_pred             cc-cccCCCccceEEccc
Confidence            22 225677788888883

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-32  Score=206.84  Aligned_cols=243  Identities=19%  Similarity=0.292  Sum_probs=203.9

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC--eEEEEeCCCcEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVK  128 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~  128 (375)
                      +..+..|..+|++++.+  +.++++|+.|-+|+|||++...   .+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            55667899999999986  7899999999999999998643   4445555789999999999764  899999999999


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      +|+...-+.+..++ +|.+.|+.++.+|.++ +.++.+.|+.++.||+-.|+.-....+.              ...+.+
T Consensus       111 iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~--------------~~at~v  174 (362)
T KOG0294|consen  111 IWRVGSWELLKSLK-AHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLK--------------NKATLV  174 (362)
T ss_pred             EEEcCCeEEeeeec-ccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccC--------------Ccceee
Confidence            99999999999999 9999999999999998 7889999999999999999888777765              344569


Q ss_pred             eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194          209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG  288 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~  288 (375)
                      .|+|      .|.+++++..+ .|-+|.+.+...                                        ...+. 
T Consensus       175 ~w~~------~Gd~F~v~~~~-~i~i~q~d~A~v----------------------------------------~~~i~-  206 (362)
T KOG0294|consen  175 SWSP------QGDHFVVSGRN-KIDIYQLDNASV----------------------------------------FREIE-  206 (362)
T ss_pred             EEcC------CCCEEEEEecc-EEEEEecccHhH----------------------------------------hhhhh-
Confidence            9998      79988888776 688998886321                                        11111 


Q ss_pred             CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec-CCCCCcEEEeeCCC
Q 017194          289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT-PTESENLVVCDTSK  367 (375)
Q Consensus       289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg  367 (375)
                      ....+.++.|-    ++.+|++|++|+.|.+||..+.         .++..+.+|..+|-++.+. .+++.+|+|++.||
T Consensus       207 ~~~r~l~~~~l----~~~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  207 NPKRILCATFL----DGSELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             ccccceeeeec----CCceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            12446677774    7889999999999999999986         7778899999999999843 34788999999999


Q ss_pred             eEEEEecC
Q 017194          368 VVKVYSIS  375 (375)
Q Consensus       368 ~v~iw~~~  375 (375)
                      .|++||++
T Consensus       274 ~I~vWd~~  281 (362)
T KOG0294|consen  274 FIKVWDID  281 (362)
T ss_pred             eEEEEEcc
Confidence            99999974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=4.4e-33  Score=220.26  Aligned_cols=264  Identities=17%  Similarity=0.297  Sum_probs=215.8

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc----------eeeEeeecCccEEEEEEeCCCC-eEEEEcCCCe
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----------VQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKE   81 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----------~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~   81 (375)
                      -|.+.|+.+.+-|.+..++|+++..+.|.|||..+-.          +...+.+|...-++|+|++... +|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            4999999999999988899999999999999986432          2337788988888999998543 6889999999


Q ss_pred             EEEEECCCCCc----ccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCc--CceeeeeEecCcccceeEEEE
Q 017194           82 VKSFDVHMPAS----WRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        82 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      |++||+.....    ..+...+.+|...|..++|++ +..++++++.|+.+.|||++  +.+...... +|.+.|++++|
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~f  280 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAF  280 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEe
Confidence            99999975433    556677889999999999999 45678899999999999999  556666777 99999999999


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      +|.+.++||+|+.|++|.+||+|+.+ ++..+. +            |...|..|.|+|.     ....|++++.|+.+.
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~------------H~dev~~V~WSPh-----~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFE-G------------HEDEVFQVEWSPH-----NETVLASSGTDRRLN  342 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceecc-C------------CCcceEEEEeCCC-----CCceeEecccCCcEE
Confidence            99998899999999999999999754 445554 3            6789999999996     788999999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC-cEEEEec
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGG  312 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~s~~  312 (375)
                      +||+..-.......                          ........+++.-.||...|..+.|+   |.. -.|++.+
T Consensus       343 vWDls~ig~eq~~e--------------------------da~dgppEllF~HgGH~~kV~DfsWn---p~ePW~I~Sva  393 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPE--------------------------DAEDGPPELLFIHGGHTAKVSDFSWN---PNEPWTIASVA  393 (422)
T ss_pred             EEeccccccccChh--------------------------hhccCCcceeEEecCcccccccccCC---CCCCeEEEEec
Confidence            99998632221100                          00122335667888999999999999   444 4677899


Q ss_pred             CCCeEEEEeCCC
Q 017194          313 NDKLVKVWDCSR  324 (375)
Q Consensus       313 ~dg~i~iwd~~~  324 (375)
                      +|+.+.||.+..
T Consensus       394 eDN~LqIW~~s~  405 (422)
T KOG0264|consen  394 EDNILQIWQMAE  405 (422)
T ss_pred             CCceEEEeeccc
Confidence            999999999875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-33  Score=221.91  Aligned_cols=260  Identities=21%  Similarity=0.256  Sum_probs=212.6

Q ss_pred             ecCccEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCcccc-------cccccCCCcceeEEEEcCC-CCeEEEEeCCCc
Q 017194           56 VGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRP-------LESYNYNKEEINQIVCNPK-SSFLACADDGGD  126 (375)
Q Consensus        56 ~~~~~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  126 (375)
                      .|.+.|+.+.+-|+...|+ +.+..+.+.|||..+......       -..+.+|...-.+++|++. .-.+++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            4889999999999876655 456678999999875332222       2256778887888999995 346999999999


Q ss_pred             EEEEeCcCc-------eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC--CCcceEEecCCCCCCCCCC
Q 017194          127 VKIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAG  197 (375)
Q Consensus       127 i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~  197 (375)
                      |++||+...       .....+. +|...|..++|++....+|++++.|+.+.|||+|+  .++..... .         
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-a---------  270 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-A---------  270 (422)
T ss_pred             EEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-c---------
Confidence            999999743       2345567 99999999999998887999999999999999995  33333333 2         


Q ss_pred             cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                         |...+++++|+|.     ++.+||+|+.|++|.+||+++..                                    
T Consensus       271 ---h~~~vn~~~fnp~-----~~~ilAT~S~D~tV~LwDlRnL~------------------------------------  306 (422)
T KOG0264|consen  271 ---HSAEVNCVAFNPF-----NEFILATGSADKTVALWDLRNLN------------------------------------  306 (422)
T ss_pred             ---cCCceeEEEeCCC-----CCceEEeccCCCcEEEeechhcc------------------------------------
Confidence               5789999999997     78999999999999999999742                                    


Q ss_pred             ceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee-----ecchhhhhhhhcccccceeeeee
Q 017194          278 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-----TSINNDLLIKNINLNKKVNWLCT  352 (375)
Q Consensus       278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~  352 (375)
                         +.+.++.+|...|.++.|||  .....||+++.|+.+.|||+..-...+     ...+.+++....||...|..+.|
T Consensus       307 ---~~lh~~e~H~dev~~V~WSP--h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW  381 (422)
T KOG0264|consen  307 ---KPLHTFEGHEDEVFQVEWSP--HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW  381 (422)
T ss_pred             ---cCceeccCCCcceEEEEeCC--CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence               35678999999999999996  456789999999999999998754432     33456777788899999999999


Q ss_pred             cCCCCCcEEEeeCCCeEEEEecC
Q 017194          353 TPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       353 ~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +|.+...|+|.+.|+.+.||++.
T Consensus       382 np~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  382 NPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCCCeEEEEecCCceEEEeecc
Confidence            99888899999999999999863

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-32  Score=205.47  Aligned_cols=278  Identities=12%  Similarity=0.152  Sum_probs=218.4

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-ce-eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      -++.|.+++|||....+++.++-||+||+|+++.. .. -+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            56789999999964677889999999999999863 33 34455689999999999999999999999999999999763


Q ss_pred             cccccccccCCCcceeEEEEcCCCC--eEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                          ......|.++|.++.|-+...  .|++|+.|.+|+.||.+...++.++.  ....+.++..-..   +++++..+.
T Consensus       106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~~p---m~vVata~r  176 (347)
T KOG0647|consen  106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVLYP---MAVVATAER  176 (347)
T ss_pred             ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhccCc---eeEEEecCC
Confidence                334455799999999988655  79999999999999999999988887  5667777765433   789999999


Q ss_pred             eEEEeeCCCCCcc-eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          170 KLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       170 ~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      .|.+|+++.+... +.++..            ....+++|+..+      +....+.|+-+|.+.+..+..+....    
T Consensus       177 ~i~vynL~n~~te~k~~~Sp------------Lk~Q~R~va~f~------d~~~~alGsiEGrv~iq~id~~~~~~----  234 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESP------------LKWQTRCVACFQ------DKDGFALGSIEGRVAIQYIDDPNPKD----  234 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCc------------ccceeeEEEEEe------cCCceEeeeecceEEEEecCCCCccC----
Confidence            9999999765332 222212            245789999988      67777999999999999888642110    


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeEeeeee---cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV---GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                                  .-.+++-+.-   .+.-..|++++|+   |.-..|+|++.||++.+||-+..
T Consensus       235 ----------------------------nFtFkCHR~~~~~~~~VYaVNsi~Fh---P~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  235 ----------------------------NFTFKCHRSTNSVNDDVYAVNSIAFH---PVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             ----------------------------ceeEEEeccCCCCCCceEEecceEee---cccceEEEecCCceEEEecchhh
Confidence                                        1112222211   1113468889999   77789999999999999999887


Q ss_pred             eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe
Q 017194          326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  363 (375)
                               ..++....|..+|++.+|+. +|.++|-+
T Consensus       284 ---------~kLk~s~~~~qpItcc~fn~-~G~ifaYA  311 (347)
T KOG0647|consen  284 ---------TKLKTSETHPQPITCCSFNR-NGSIFAYA  311 (347)
T ss_pred             ---------hhhhccCcCCCccceeEecC-CCCEEEEE
Confidence                     56677888999999999998 88887754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.4e-32  Score=203.87  Aligned_cols=253  Identities=15%  Similarity=0.191  Sum_probs=205.5

Q ss_pred             ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC--CCc
Q 017194           49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGD  126 (375)
Q Consensus        49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~  126 (375)
                      ++.+.+......|.++.|+++|.++++++.|.++++||..+++..+.+..   ++..+..++|....+.++.++.  |.+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---kkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---KKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---ccccccEEEEecCCceEEEccCCCCCc
Confidence            34455665678999999999999999999999999999998776665554   3678888999887777777765  889


Q ss_pred             EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      |+..++.+.+.++.|. ||...|++++.+|-++ .+++++.|++|++||++..++...+...               .-.
T Consensus        82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~---------------~~p  144 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS---------------GRP  144 (311)
T ss_pred             eEEEEeecCceEEEcC-CCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC---------------CCc
Confidence            9999999999999999 9999999999999998 8999999999999999988888777643               335


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  286 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
                      ..+|.|      +|-++|++...+.|++||++....-                                   ........
T Consensus       145 i~AfDp------~GLifA~~~~~~~IkLyD~Rs~dkg-----------------------------------PF~tf~i~  183 (311)
T KOG1446|consen  145 IAAFDP------EGLIFALANGSELIKLYDLRSFDKG-----------------------------------PFTTFSIT  183 (311)
T ss_pred             ceeECC------CCcEEEEecCCCeEEEEEecccCCC-----------------------------------CceeEccC
Confidence            678888      7999999998889999999963110                                   01111111


Q ss_pred             cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccc---eeeeeecCCCCCcEEEe
Q 017194          287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK---VNWLCTTPTESENLVVC  363 (375)
Q Consensus       287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~  363 (375)
                      .+.....+.+.||   |||++|+.+...+.+++.|.-++.         +...+..+...   -...+|+| |++++++|
T Consensus       184 ~~~~~ew~~l~FS---~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~g  250 (311)
T KOG1446|consen  184 DNDEAEWTDLEFS---PDGKSILLSTNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTP-DSKFVLSG  250 (311)
T ss_pred             CCCccceeeeEEc---CCCCEEEEEeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECC-CCcEEEEe
Confidence            1446778999999   999999999999999999999984         34444444332   25677888 99999999


Q ss_pred             eCCCeEEEEecC
Q 017194          364 DTSKVVKVYSIS  375 (375)
Q Consensus       364 ~~dg~v~iw~~~  375 (375)
                      +.||+|.+|+++
T Consensus       251 s~dg~i~vw~~~  262 (311)
T KOG1446|consen  251 SDDGTIHVWNLE  262 (311)
T ss_pred             cCCCcEEEEEcC
Confidence            999999999974

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=234.04  Aligned_cols=246  Identities=19%  Similarity=0.233  Sum_probs=211.5

Q ss_pred             CCCCCee-eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            4 AEAKPRR-LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         4 ~~~~~~~-l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      ++..+.. +.||.+.|.++++..- +.+|++|+.|.++++||..+|++...+.+|...|.++...+  ..+++|+.|.+|
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tV  313 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTV  313 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceE
Confidence            3445555 9999999999999874 78999999999999999999999999999999999988754  568888999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      ++|++.++..+   ..+.+|..+|.++..+  +.++++|+.|++|++||+.+++++..+. +|...|.++.+.+. + .+
T Consensus       314 kVW~v~n~~~l---~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~-~-~~  385 (537)
T KOG0274|consen  314 KVWDVTNGACL---NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE-N-RL  385 (537)
T ss_pred             EEEeccCcceE---EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc-c-eE
Confidence            99999976544   4444589999999997  7799999999999999999999999999 99999999988775 4 79


Q ss_pred             EEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          163 ISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      ++|+.|++|++||+++. +++..+..             |...+..+.+        .++.|++++.|+.|++||..++ 
T Consensus       386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~-------------h~~~v~~l~~--------~~~~Lvs~~aD~~Ik~WD~~~~-  443 (537)
T KOG0274|consen  386 LSGSLDTTIKVWDLRTKRKCIHTLQG-------------HTSLVSSLLL--------RDNFLVSSSADGTIKLWDAEEG-  443 (537)
T ss_pred             EeeeeccceEeecCCchhhhhhhhcC-------------Cccccccccc--------ccceeEeccccccEEEeecccC-
Confidence            99999999999999999 88888873             3566666666        5899999999999999999975 


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                                                             +++..+.+ |...|..+++.     ...+++++.||.+++|
T Consensus       444 ---------------------------------------~~~~~~~~~~~~~v~~l~~~-----~~~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  444 ---------------------------------------ECLRTLEGRHVGGVSALALG-----KEEILCSSDDGSVKLW  479 (537)
T ss_pred             ---------------------------------------ceeeeeccCCcccEEEeecC-----cceEEEEecCCeeEEE
Confidence                                                   44556666 66788888763     3578899999999999


Q ss_pred             eCCCce
Q 017194          321 DCSRFQ  326 (375)
Q Consensus       321 d~~~~~  326 (375)
                      |+++++
T Consensus       480 dl~~~~  485 (537)
T KOG0274|consen  480 DLRSGT  485 (537)
T ss_pred             ecccCc
Confidence            999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=100.00  E-value=4.3e-33  Score=223.27  Aligned_cols=282  Identities=17%  Similarity=0.298  Sum_probs=236.4

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeee--cCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      .|.+-|.++..+.. .+.+.||+. |.|+|||+....   ++..+..  ....|.++.+.|||+.|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            38788888888887 789999997 679999986432   2333332  4678999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      ..... ..-..+....-....++.+||.+..++++.||.|.|||+++...++.|+ +|.+.+.||..+++|. .|.+|+-
T Consensus       495 AapTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGt-klWTGGl  571 (705)
T KOG0639|consen  495 AAPTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGT-KLWTGGL  571 (705)
T ss_pred             cCCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCc-eeecCCC
Confidence            86432 2222222223457789999999999999999999999999999999999 9999999999999998 6999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      |.+|+.||+++++.+....+.              ..|.++..+|      ++.+|++|-.++.+.+......       
T Consensus       572 DntvRcWDlregrqlqqhdF~--------------SQIfSLg~cP------~~dWlavGMens~vevlh~skp-------  624 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQHDFS--------------SQIFSLGYCP------TGDWLAVGMENSNVEVLHTSKP-------  624 (705)
T ss_pred             ccceeehhhhhhhhhhhhhhh--------------hhheecccCC------CccceeeecccCcEEEEecCCc-------
Confidence            999999999999988887754              7899999999      7999999999999988877752       


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                                        ..+.+.-|..-|.++.|.   +-|+++++.+.|+.+..|...-+..
T Consensus       625 ----------------------------------~kyqlhlheScVLSlKFa---~cGkwfvStGkDnlLnawrtPyGas  667 (705)
T KOG0639|consen  625 ----------------------------------EKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGAS  667 (705)
T ss_pred             ----------------------------------cceeecccccEEEEEEec---ccCceeeecCchhhhhhccCccccc
Confidence                                              334677889999999999   8999999999999999999988742


Q ss_pred             eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +          ........|.++.++. |.+||+||+.|....||.+
T Consensus       668 i----------FqskE~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  668 I----------FQSKESSSVLSCDISF-DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             e----------eeccccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence            2          2223457899999998 8899999999998888876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-33  Score=229.95  Aligned_cols=287  Identities=15%  Similarity=0.167  Sum_probs=233.4

Q ss_pred             CCCcee---EEEEecCCCCEEEEeCCCCcEEEEecccCc------eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194           14 HKATAT---CCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus        14 h~~~i~---~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      |...|.   .+..+..++++|+|||.||.|++|+...-.      .+..++.|.+.|+.+....+++.|++++.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            555666   566666668899999999999999986432      36778899999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEE-cCCCCeEEEEeCCCcEEEEeCcCc--eeeeeE--------ecCcccceeEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVC-NPKSSFLACADDGGDVKIIDIRQH--CLYKSL--------RAGHSSICSSVQ  153 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~--------~~~~~~~v~~~~  153 (375)
                      |+...+. .-....+..|...|.|+++ .++...+|+|+-|+.|.+||+.++  +.+..+        ..++...|.+++
T Consensus       100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen  100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             eecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            9998653 3456667778999999999 778889999999999999999977  233322        126788999999


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      .++.|. ++++|+..+.+++||.++.+.+..+. +            |...|..+..++      +|..+++++.||+|+
T Consensus       179 ~N~t~t-~ivsGgtek~lr~wDprt~~kimkLr-G------------HTdNVr~ll~~d------DGt~~ls~sSDgtIr  238 (735)
T KOG0308|consen  179 MNQTGT-IIVSGGTEKDLRLWDPRTCKKIMKLR-G------------HTDNVRVLLVND------DGTRLLSASSDGTIR  238 (735)
T ss_pred             cCCcce-EEEecCcccceEEeccccccceeeee-c------------cccceEEEEEcC------CCCeEeecCCCceEE
Confidence            999997 89999999999999999999999888 5            688999999998      899999999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||+...                                        +++.++..|...|+++..+   |+=..+.+|+.
T Consensus       239 lWdLgqQ----------------------------------------rCl~T~~vH~e~VWaL~~~---~sf~~vYsG~r  275 (735)
T KOG0308|consen  239 LWDLGQQ----------------------------------------RCLATYIVHKEGVWALQSS---PSFTHVYSGGR  275 (735)
T ss_pred             eeecccc----------------------------------------ceeeeEEeccCceEEEeeC---CCcceEEecCC
Confidence            9999853                                        6777899999999999999   88899999999


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ||.|..=|+.+..         ....+.....+|..+..+..+ +.+=++..|+.|+-|..
T Consensus       276 d~~i~~Tdl~n~~---------~~tlick~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  276 DGNIYRTDLRNPA---------KSTLICKEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             CCcEEecccCCch---------hheEeecCCCchhhhhhcccc-CCceeeeccccceecCC
Confidence            9999999999962         222223334455555554322 23345556777777754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.7e-32  Score=213.98  Aligned_cols=294  Identities=14%  Similarity=0.191  Sum_probs=236.1

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~   91 (375)
                      .++|+++.|+|. ..+|++|+.|++++||.+...  ..++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            478999999998 899999999999999998643  34666766789999999999999 88889989999999999765


Q ss_pred             cccccccccCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           92 SWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        92 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      . ..+....++ ...+.....++++++|+..+..|.|.+....+++.+..++  -.+.|..++|+.+++ .|++++.+|.
T Consensus       292 ~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk-~l~~~~~~Ge  367 (514)
T KOG2055|consen  292 V-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSK-ELLASGGTGE  367 (514)
T ss_pred             c-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCc-EEEEEcCCce
Confidence            4 333333333 3467788999999999999999999999999999999998  688999999999998 7888888999


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT  250 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  250 (375)
                      |.+||++...++.++...            ..-.-++++.++      ++.+||+|+..|.|-|||..+....       
T Consensus       368 V~v~nl~~~~~~~rf~D~------------G~v~gts~~~S~------ng~ylA~GS~~GiVNIYd~~s~~~s-------  422 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDD------------GSVHGTSLCISL------NGSYLATGSDSGIVNIYDGNSCFAS-------  422 (514)
T ss_pred             EEEEecCCcceEEEEeec------------CccceeeeeecC------CCceEEeccCcceEEEeccchhhcc-------
Confidence            999999999999888744            112335666667      8999999999999999998753211       


Q ss_pred             CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC--CCeEEEEeCCCceee
Q 017194          251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCSRFQGV  328 (375)
Q Consensus       251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~  328 (375)
                                                 ...+++..+..-...|++++|+   +|.++||.+|.  +..+++-.+.+....
T Consensus       423 ---------------------------~~PkPik~~dNLtt~Itsl~Fn---~d~qiLAiaS~~~knalrLVHvPS~TVF  472 (514)
T KOG2055|consen  423 ---------------------------TNPKPIKTVDNLTTAITSLQFN---HDAQILAIASRVKKNALRLVHVPSCTVF  472 (514)
T ss_pred             ---------------------------CCCCchhhhhhhheeeeeeeeC---cchhhhhhhhhccccceEEEeccceeee
Confidence                                       1124445555667789999999   99999998875  678999998887433


Q ss_pred             eecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          329 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ...+      .....-+.|+|++|+| .+.+||.|..+|+|.+|.+.
T Consensus       473 sNfP------~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  473 SNFP------TSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ccCC------CCCCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence            1110      1122336799999999 88899999999999999873

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=3.9e-32  Score=225.55  Aligned_cols=279  Identities=16%  Similarity=0.285  Sum_probs=233.7

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEeeecCccEEE-EEEeC-CCCeEEEEcCCCe
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTS-LCFKS-GNEDIIYVSSGKE   81 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~-l~~~~-~~~~l~~~~~d~~   81 (375)
                      +..+.+.||+..|..+++.+.  ..+++++.||++++|+-..++.+  ..+.+|.+-|.. +++.+ ++-.+++|+.|..
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            455789999999999888764  58999999999999997655543  345667777777 88875 4446999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      +.+|.+.+   ..++..+.+|+..|.++....++. +++|+.|.++++|-+  +++...+. +|+..|+++...|++  .
T Consensus        83 i~v~~~~~---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e~--~  153 (745)
T KOG0301|consen   83 IIVFKLSQ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPEN--T  153 (745)
T ss_pred             EEEEecCC---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC-CcchheeeeeecCCC--c
Confidence            99999885   577888889999999999888886 999999999999975  56666788 999999999999998  5


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      +++|+.|.+|++|.-  ++.++++..             |..-|+.+++-+       +..+++++.||.|++|++..  
T Consensus       154 ~vTgsaDKtIklWk~--~~~l~tf~g-------------HtD~VRgL~vl~-------~~~flScsNDg~Ir~w~~~g--  209 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKG--GTLLKTFSG-------------HTDCVRGLAVLD-------DSHFLSCSNDGSIRLWDLDG--  209 (745)
T ss_pred             EEeccCcceeeeccC--Cchhhhhcc-------------chhheeeeEEec-------CCCeEeecCCceEEEEeccC--
Confidence            999999999999985  677777773             578999999996       77889999999999999964  


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                             .++.++.+|...|++++..   .++..++++++|++++||+
T Consensus       210 ---------------------------------------e~l~~~~ghtn~vYsis~~---~~~~~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  210 ---------------------------------------EVLLEMHGHTNFVYSISMA---LSDGLIVSTGEDRTLRIWK  247 (745)
T ss_pred             ---------------------------------------ceeeeeeccceEEEEEEec---CCCCeEEEecCCceEEEee
Confidence                                                   5667899999999999977   7888999999999999999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ....           .+.+.-....|+++.+-+ +|+ |++|+.||.||||..
T Consensus       248 ~~e~-----------~q~I~lPttsiWsa~~L~-NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  248 KDEC-----------VQVITLPTTSIWSAKVLL-NGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             cCce-----------EEEEecCccceEEEEEee-CCC-EEEeccCceEEEEEe
Confidence            8743           223333344888888887 765 899999999999975

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=3.4e-31  Score=227.94  Aligned_cols=235  Identities=16%  Similarity=0.116  Sum_probs=180.3

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--------eeeEeeecCccEEEEEEeCCCCeE-EEEc
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKSGNEDI-IYVS   77 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~l-~~~~   77 (375)
                      .+..+.+|.++|.+++|+|+++.+||+|+.|++|+|||+.++.        ++..+.+|...|.+++|+|++..+ ++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            4567899999999999999767899999999999999997642        244678899999999999998764 6889


Q ss_pred             CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEE-----
Q 017194           78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV-----  152 (375)
Q Consensus        78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-----  152 (375)
                      .|+.|++||+++++....+   . |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+. +|.+.+...     
T Consensus       146 ~DgtIrIWDl~tg~~~~~i---~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~  220 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQI---N-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWID  220 (568)
T ss_pred             CCCeEEEEECCCCcEEEEE---e-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEee
Confidence            9999999999976543322   2 35689999999999999999999999999999999999998 898765433     


Q ss_pred             EEeeCCCcEEEEeecCC----eEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          153 QFIPWKPWEVISGGLDS----KLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~----~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      .|++++. ++++++.|+    +|++||++. .+++..+....           ....+......+      ++.++++|+
T Consensus       221 ~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-----------~~~~L~p~~D~~------tg~l~lsGk  282 (568)
T PTZ00420        221 GLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-----------ASAPLIPHYDES------TGLIYLIGK  282 (568)
T ss_pred             eEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-----------CccceEEeeeCC------CCCEEEEEE
Confidence            3457777 678777664    799999995 56666655330           112222222222      688999999


Q ss_pred             cCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194          228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI  264 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~  264 (375)
                      .|+.|++|++..+............+...++|.|+..
T Consensus       283 GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        283 GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             CCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            9999999999876543333333445667778877654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.9e-32  Score=200.03  Aligned_cols=244  Identities=18%  Similarity=0.277  Sum_probs=211.0

Q ss_pred             eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEE
Q 017194           52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKII  130 (375)
Q Consensus        52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw  130 (375)
                      +.+++|...|.+++|+.+|..|++++.|+++.+|+++..+ ...-....+|.+.|-.++|+| ....+++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            4566789999999999999999999999999999998653 233344667888999999998 45789999999999999


Q ss_pred             eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                      |++.+++..... . ...=.-+.|+|+|+ .++.++.|..|.+.|.++.+.....+.              ...++.+.|
T Consensus        93 d~r~~k~~~~i~-~-~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~--------------~~e~ne~~w  155 (313)
T KOG1407|consen   93 DIRSGKCTARIE-T-KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQF--------------KFEVNEISW  155 (313)
T ss_pred             EeccCcEEEEee-c-cCcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcc--------------cceeeeeee
Confidence            999999998887 3 34445578999999 699999999999999999888777764              367888899


Q ss_pred             cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194          211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  290 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
                      +.      ++.+++.....|.|.|.....                                        ++.+..+++|.
T Consensus       156 ~~------~nd~Fflt~GlG~v~ILsyps----------------------------------------Lkpv~si~AH~  189 (313)
T KOG1407|consen  156 NN------SNDLFFLTNGLGCVEILSYPS----------------------------------------LKPVQSIKAHP  189 (313)
T ss_pred             cC------CCCEEEEecCCceEEEEeccc----------------------------------------cccccccccCC
Confidence            86      688888888889999988774                                        36677899999


Q ss_pred             ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194          291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  370 (375)
Q Consensus       291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~  370 (375)
                      ....++.|+   |+|+|+|+|+.|-.+.+||++..         -+++.+..+.-+|..+.|+. ||++||++++|..|-
T Consensus       190 snCicI~f~---p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~ID  256 (313)
T KOG1407|consen  190 SNCICIEFD---PDGRYFATGSADALVSLWDVDEL---------ICERCISRLDWPVRTLSFSH-DGRMLASASEDHFID  256 (313)
T ss_pred             cceEEEEEC---CCCceEeeccccceeeccChhHh---------hhheeeccccCceEEEEecc-CcceeeccCccceEE
Confidence            999999999   99999999999999999999998         78888899999999999998 999999999998875


Q ss_pred             EE
Q 017194          371 VY  372 (375)
Q Consensus       371 iw  372 (375)
                      |=
T Consensus       257 IA  258 (313)
T KOG1407|consen  257 IA  258 (313)
T ss_pred             eE
Confidence            53

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.9e-31  Score=200.05  Aligned_cols=273  Identities=15%  Similarity=0.190  Sum_probs=217.3

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW   93 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   93 (375)
                      -++.|.+|.|+|. ++.|+.++-||++++|++...+....++ |..++.+++|.++ ..+++|+.||.|+.+|+.++.. 
T Consensus        12 P~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-   87 (323)
T ss_pred             ChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-
Confidence            3678999999988 6777778899999999999887666665 8999999999874 5699999999999999997643 


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                         ..+..|..+|.++.+++....+++|+.|++|++||.+.......+.  ....|.++....+   .|++|+.+..+.+
T Consensus        88 ---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~g~---~LvVg~~~r~v~i  159 (323)
T KOG1036|consen   88 ---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVSGN---RLVVGTSDRKVLI  159 (323)
T ss_pred             ---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEeccCC---EEEEeecCceEEE
Confidence               2334468999999999988899999999999999998766666665  4458888877644   7999999999999


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL  253 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  253 (375)
                      ||+++.....+....           .-...+.++++.|      ++.-+++++-||.|.+=.+.......         
T Consensus       160 yDLRn~~~~~q~reS-----------~lkyqtR~v~~~p------n~eGy~~sSieGRVavE~~d~s~~~~---------  213 (323)
T KOG1036|consen  160 YDLRNLDEPFQRRES-----------SLKYQTRCVALVP------NGEGYVVSSIEGRVAVEYFDDSEEAQ---------  213 (323)
T ss_pred             EEcccccchhhhccc-----------cceeEEEEEEEec------CCCceEEEeecceEEEEccCCchHHh---------
Confidence            999987654432211           0246789999999      78889999999999886655431110         


Q ss_pred             CCceeecccccceeeeeeeecCCcceeEeeeeecCC---------CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH---------TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                                 ...+.++.|         -.+|++++|+   |--+.||||+.||.|.+||+.+
T Consensus       214 ---------------------------skkyaFkCHr~~~~~~~~~yPVNai~Fh---p~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  214 ---------------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFH---PIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             ---------------------------hhceeEEeeecccCCceEEEEeceeEec---cccceEEecCCCceEEEccCcc
Confidence                                       011122222         2479999999   6678999999999999999999


Q ss_pred             ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194          325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      .         +.+..+......|..++|+. +|..||+++
T Consensus       264 r---------Krl~q~~~~~~SI~slsfs~-dG~~LAia~  293 (323)
T KOG1036|consen  264 R---------KRLKQLAKYETSISSLSFSM-DGSLLAIAS  293 (323)
T ss_pred             h---------hhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence            8         66777888888899999998 999999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-31  Score=212.21  Aligned_cols=255  Identities=19%  Similarity=0.310  Sum_probs=213.5

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      ++|...|.+++.++| +++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.+++|+++.  
T Consensus       199 ~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~--  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ--  275 (479)
T ss_pred             ccccceeEEEEEcCC-CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH--
Confidence            489999999999999 99999999999999999999999999999999999999998888999999999999999983  


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                       ...+.++.+|...|..+....-++.+-+|+.|+++++|++.. +....+. ++.+.+.|++|..+.  .|++|+.+|.|
T Consensus       276 -~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifr-g~~~sidcv~~In~~--HfvsGSdnG~I  350 (479)
T KOG0299|consen  276 -LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFR-GGEGSIDCVAFINDE--HFVSGSDNGSI  350 (479)
T ss_pred             -hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeee-CCCCCeeeEEEeccc--ceeeccCCceE
Confidence             567788889999999999998888888999999999999943 3334566 889999999999886  69999999999


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      .+|++.+.+++......++..... ...-++.+|++++..|      ...++++|+.+|.|++|-+..+.          
T Consensus       351 aLWs~~KKkplf~~~~AHgv~~~~-~~~~~~~Witsla~i~------~sdL~asGS~~G~vrLW~i~~g~----------  413 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVIPEL-DPVNGNFWITSLAVIP------GSDLLASGSWSGCVRLWKIEDGL----------  413 (479)
T ss_pred             EEeeecccCceeEeeccccccCCc-cccccccceeeeEecc------cCceEEecCCCCceEEEEecCCc----------
Confidence            999999999999888664433221 1222346999999999      79999999999999999999752          


Q ss_pred             CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe-cCCCeEEEEe
Q 017194          252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWD  321 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~-~~dg~i~iwd  321 (375)
                                                +.+.++..+. -.+.|++++|+   ++|+.|++| +....+--|-
T Consensus       414 --------------------------r~i~~l~~ls-~~GfVNsl~f~---~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  414 --------------------------RAINLLYSLS-LVGFVNSLAFS---NSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             --------------------------cccceeeecc-cccEEEEEEEc---cCCCEEEEecccccccceee
Confidence                                      2334455554 46789999999   899855554 5555444443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.8e-31  Score=200.15  Aligned_cols=304  Identities=16%  Similarity=0.202  Sum_probs=225.9

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce---------------eeEeeecCccEEEEEEeC-CCCeEE
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---------------QLVTDVGNGPVTSLCFKS-GNEDII   74 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------------~~~~~~~~~~v~~l~~~~-~~~~l~   74 (375)
                      .+-|.+.|+++...+..++++++|+.||.|.+||++....               ...-.+|.-.|..+.|-| |.-.+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            4569999999999999899999999999999999975431               111235788999999988 445677


Q ss_pred             EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC---CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeE
Q 017194           75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS  151 (375)
Q Consensus        75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  151 (375)
                      +++.|.++++||..+-+..   ..++. ++.|.+-+++|-   ..++|+|..+-.|++.|+.+|..-..+. +|...|.+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a---~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vla  193 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEA---VDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLA  193 (397)
T ss_pred             cccccceEEEeecccceee---EEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEE
Confidence            8888999999999875433   33332 678888899983   4568889899999999999999999999 99999999


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCC-CCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNG-NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      +.|+|..+++|++|+.||.|++||++.. .+...+..+...... ......|.+.++.++|+.      ++.++++.+.|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS------d~~~l~~~gtd  267 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS------DARYLASCGTD  267 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc------cchhhhhccCc
Confidence            9999999999999999999999999875 455555533211001 113444778899999998      89999999999


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI  309 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~  309 (375)
                      ..+++|+..+++.......+                                ....-+.|. .+. +. +   .+...++
T Consensus       268 ~r~r~wn~~~G~ntl~~~g~--------------------------------~~~n~~~~~-~~~-~~-~---~~s~vfv  309 (397)
T KOG4283|consen  268 DRIRVWNMESGRNTLREFGP--------------------------------IIHNQTTSF-AVH-IQ-S---MDSDVFV  309 (397)
T ss_pred             cceEEeecccCccccccccc--------------------------------ccccccccc-eEE-Ee-e---cccceEE
Confidence            99999999986543322111                                000000010 011 11 1   1222333


Q ss_pred             EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          310 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       310 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      ---.++.+.++++-.+         ..++.+..|...+.+.++-| +=+...+++.|+.|..|-
T Consensus       310 ~~p~~~~lall~~~sg---------s~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  310 LFPNDGSLALLNLLEG---------SFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             EEecCCeEEEEEccCc---------eEEEeeecccceeeEEeecC-chhhhhccccCCcccccc
Confidence            3333477888888887         56667778878888888888 778899999999999985

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.2e-31  Score=198.65  Aligned_cols=299  Identities=16%  Similarity=0.185  Sum_probs=217.2

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEe--eecCccEEEEEEeCCCCeEEEE-cCCCeE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVT--DVGNGPVTSLCFKSGNEDIIYV-SSGKEV   82 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~--~~~~~~v~~l~~~~~~~~l~~~-~~d~~i   82 (375)
                      +..|++|.+.|++++|+.| |+.|||++.|++|+||+++..+..  +.+  ...-+-.+.+.|.||-+-++.. -...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            4568999999999999999 999999999999999999764321  111  1123456889999998765554 455689


Q ss_pred             EEEECCCCCcc---c------ccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194           83 KSFDVHMPASW---R------PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ  153 (375)
Q Consensus        83 ~iwd~~~~~~~---~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  153 (375)
                      ++|.+...+..   .      .+...+.|...+..+-...++.+|++++.|..|.+|+++ |+.+..+. .....-...+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-ccccccccee
Confidence            99987542221   1      111223456677778888889999999999999999997 88888887 6666677889


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCC---CC-----cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSK---GR-----PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  225 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  225 (375)
                      .+|+|+ ++++++..--|++|.+--   |.     ....++ +            |...|..++|++      +...+++
T Consensus       236 vSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-G------------H~saV~~~aFsn------~S~r~vt  295 (420)
T KOG2096|consen  236 VSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-G------------HQSAVLAAAFSN------SSTRAVT  295 (420)
T ss_pred             eCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-c------------chhheeeeeeCC------CcceeEE
Confidence            999999 799999888999998642   21     122232 2            678999999999      8999999


Q ss_pred             EecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee-eeecCCCccEEEEEEeecCCC
Q 017194          226 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD-YSVGGHTAAASCVAFSMFGER  304 (375)
Q Consensus       226 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~  304 (375)
                      .+.||++++||+.-......-                              ...++.- ..+..-.+.-..++.+   |+
T Consensus       296 vSkDG~wriwdtdVrY~~~qD------------------------------pk~Lk~g~~pl~aag~~p~RL~ls---P~  342 (420)
T KOG2096|consen  296 VSKDGKWRIWDTDVRYEAGQD------------------------------PKILKEGSAPLHAAGSEPVRLELS---PS  342 (420)
T ss_pred             EecCCcEEEeeccceEecCCC------------------------------chHhhcCCcchhhcCCCceEEEeC---CC
Confidence            999999999998742111000                              0000000 1122223334488999   99


Q ss_pred             CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          305 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       305 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |+.||.+.. ..++++..++++        ........|...|.+++|++ +|+++++++ |..+++..
T Consensus       343 g~~lA~s~g-s~l~~~~se~g~--------~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  343 GDSLAVSFG-SDLKVFASEDGK--------DYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CcEEEeecC-CceEEEEcccCc--------cchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence            998887654 579999999985        33334456999999999999 999999986 56676653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.2e-32  Score=214.61  Aligned_cols=242  Identities=24%  Similarity=0.369  Sum_probs=204.3

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      ...|.+++|+|...+=++....-.+.+|+..+....+.+..+   ...+.++.|-.||+++++|...|.|++||+.+...
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF---k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF---KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh---ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence            468999999997665444444678999998876555556666   67899999999999999999999999999888778


Q ss_pred             eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      ++.+. +|+.++..+.|+|+++.+|++|+.|+.+++||+.+......+. +            |...|.+.+++|.    
T Consensus       103 LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~------------htDYVR~g~~~~~----  164 (487)
T KOG0310|consen  103 LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-G------------HTDYVRCGDISPA----  164 (487)
T ss_pred             HHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-C------------CcceeEeeccccC----
Confidence            89999 9999999999999998889999999999999999887533333 3            6889999999996    


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194          218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  297 (375)
Q Consensus       218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (375)
                       ++.++++|+.||.|++||++...                                       ..+.++ .|..+|..+.
T Consensus       165 -~~hivvtGsYDg~vrl~DtR~~~---------------------------------------~~v~el-nhg~pVe~vl  203 (487)
T KOG0310|consen  165 -NDHIVVTGSYDGKVRLWDTRSLT---------------------------------------SRVVEL-NHGCPVESVL  203 (487)
T ss_pred             -CCeEEEecCCCceEEEEEeccCC---------------------------------------ceeEEe-cCCCceeeEE
Confidence             77899999999999999999631                                       122233 5889999999


Q ss_pred             EeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +-   |.|..+|+++. +.|+|||+.++.        +.+.....|...|+|+++.. ++..|++++-|+.|++|++
T Consensus       204 ~l---psgs~iasAgG-n~vkVWDl~~G~--------qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  204 AL---PSGSLIASAGG-NSVKVWDLTTGG--------QLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             Ec---CCCCEEEEcCC-CeEEEEEecCCc--------eehhhhhcccceEEEEEeec-CCceEeecccccceEEEEc
Confidence            99   89999999886 579999999764        45555666999999999998 8899999999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.4e-31  Score=221.14  Aligned_cols=299  Identities=17%  Similarity=0.173  Sum_probs=235.2

Q ss_pred             eeeecCCCceeEEEEecC----------CCCEEEEeCCCCcEEEEecccCceeeE-------------e-----------
Q 017194            9 RRLRGHKATATCCIASRD----------RPGFVASSGEDGCICWFDLRSKDVQLV-------------T-----------   54 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~----------~~~~l~s~~~d~~i~iw~~~~~~~~~~-------------~-----------   54 (375)
                      ..+-.|...|+.+.--|-          ....++|++.|++|++|+++.+..-..             .           
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD  442 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence            344458888888766551          023589999999999999875321000             0           


Q ss_pred             -------------eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC---CCCeE
Q 017194           55 -------------DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP---KSSFL  118 (375)
Q Consensus        55 -------------~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l  118 (375)
                                   -.....+.+++.+|+|++|++|...|+++||++..   +......+.|+..|.|+.|+.   ..++|
T Consensus       443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLL  519 (1080)
T KOG1408|consen  443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLL  519 (1080)
T ss_pred             ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhh
Confidence                         01235789999999999999999999999999984   556666778999999999986   35789


Q ss_pred             EEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCC-CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194          119 ACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA  196 (375)
Q Consensus       119 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  196 (375)
                      |+++.|..|++||+... .+++++. +|...|+++.|.-.| +..+++++.|..|.+--.+.......+.-+        
T Consensus       520 ASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~--------  590 (1080)
T KOG1408|consen  520 ASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH--------  590 (1080)
T ss_pred             hhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc--------
Confidence            99999999999999754 5678888 999999999998877 236899999987755333221111111111        


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                      ........++.+++.|      +.+++++++.|..|+|||+.++++.                                 
T Consensus       591 t~t~~ktTlYDm~Vdp------~~k~v~t~cQDrnirif~i~sgKq~---------------------------------  631 (1080)
T KOG1408|consen  591 TQTLSKTTLYDMAVDP------TSKLVVTVCQDRNIRIFDIESGKQV---------------------------------  631 (1080)
T ss_pred             ccccccceEEEeeeCC------CcceEEEEecccceEEEecccccee---------------------------------
Confidence            1111245788999988      7999999999999999999986544                                 


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCC
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  356 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  356 (375)
                          +..+.-.+|.+..-.+...   |.|-|||+...|.++.++|..++         +++....+|...|+.+.|.+ |
T Consensus       632 ----k~FKgs~~~eG~lIKv~lD---PSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF~n-D  694 (1080)
T KOG1408|consen  632 ----KSFKGSRDHEGDLIKVILD---PSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKFLN-D  694 (1080)
T ss_pred             ----eeecccccCCCceEEEEEC---CCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeeecc-c
Confidence                3333445677778888888   99999999999999999999999         99999999999999999999 9


Q ss_pred             CCcEEEeeCCCeEEEEecC
Q 017194          357 SENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       357 ~~~l~s~~~dg~v~iw~~~  375 (375)
                      -+.|++.+.||.|.||.++
T Consensus       695 CkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  695 CKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             chhheeecCCceEEEEECc
Confidence            9999999999999999975

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-30  Score=219.21  Aligned_cols=334  Identities=16%  Similarity=0.152  Sum_probs=244.0

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-EEEEcCCCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSGKEV   82 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~d~~i   82 (375)
                      +++.+.+++++.+.|+++.-+|- -..+|.|..+|+|.|++++.++.+.+++...+.|++++|..||+. +++++..|.+
T Consensus       191 t~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m  269 (910)
T KOG1539|consen  191 TGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM  269 (910)
T ss_pred             cCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence            67788999999999999999998 889999999999999999999999999965699999999999976 4555666999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce----eee-------------------
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC----LYK-------------------  139 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~-------------------  139 (375)
                      .+||++..+....+  ...|.+.|....|.|....+++++.|..+++|=.+++.    .++                   
T Consensus       270 ~~wDLe~kkl~~v~--~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g  347 (910)
T KOG1539|consen  270 AFWDLEKKKLINVT--RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG  347 (910)
T ss_pred             EEEEcCCCeeeeee--eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence            99999864432222  22455666666777666666666666665555322110    000                   


Q ss_pred             --------------------------------------------------------------------------------
Q 017194          140 --------------------------------------------------------------------------------  139 (375)
Q Consensus       140 --------------------------------------------------------------------------------  139 (375)
                                                                                                      
T Consensus       348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW  427 (910)
T KOG1539|consen  348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW  427 (910)
T ss_pred             EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence                                                                                            


Q ss_pred             ----------eEec----CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194          140 ----------SLRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       140 ----------~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                                .+..    .-...+++++.++.|+ +.+.|+..|.|-+|++.+|-....+-          ....|...|
T Consensus       428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----------~~~ah~~~V  496 (910)
T KOG1539|consen  428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----------DSPAHKGEV  496 (910)
T ss_pred             eccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc----------cCccccCce
Confidence                      0110    0124678888899998 78889999999999999887666662          011267899


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee---eeeeecCCcceeEe
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHL  282 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~  282 (375)
                      +.++...      .++.+++++.+|.+++||..+..........  ..+..+........++.   .-.....+..+.+.
T Consensus       497 ~gla~D~------~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  497 TGLAVDG------TNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             eEEEecC------CCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            9999977      6889999999999999999976533322211  12222222222222221   11112222334456


Q ss_pred             eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  362 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  362 (375)
                      ++.+.+|.+.|++++||   |||++|++++.|++|++||+.++..+          .......+++.+.|+| +|++||+
T Consensus       569 vR~f~gh~nritd~~FS---~DgrWlisasmD~tIr~wDlpt~~lI----------D~~~vd~~~~sls~SP-ngD~LAT  634 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFS---PDGRWLISASMDSTIRTWDLPTGTLI----------DGLLVDSPCTSLSFSP-NGDFLAT  634 (910)
T ss_pred             hHHhhccccceeeeEeC---CCCcEEEEeecCCcEEEEeccCccee----------eeEecCCcceeeEECC-CCCEEEE
Confidence            77899999999999999   99999999999999999999998432          2334567889999999 9999999


Q ss_pred             eeCC-CeEEEEe
Q 017194          363 CDTS-KVVKVYS  373 (375)
Q Consensus       363 ~~~d-g~v~iw~  373 (375)
                      ...| ..|++|.
T Consensus       635 ~Hvd~~gIylWs  646 (910)
T KOG1539|consen  635 VHVDQNGIYLWS  646 (910)
T ss_pred             EEecCceEEEEE
Confidence            9988 6799994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=7.4e-31  Score=217.97  Aligned_cols=344  Identities=15%  Similarity=0.106  Sum_probs=251.8

Q ss_pred             CCCeeeecCCCceeEEEEecCCC--CEEEEeCCCCcEEEEecccCc---------------------ee----------e
Q 017194            6 AKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKD---------------------VQ----------L   52 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~---------------------~~----------~   52 (375)
                      +.+..|.||.+.|.+++|....+  -+|||++.|..||||.+.-+.                     ..          .
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            45678999999999999987633  379999999999999875332                     01          1


Q ss_pred             EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc----ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      .+.+|++.|+++.|+|.+..|++++.|+++.+|...+..-    ...+....+.........|+|+++.+++-+..|..+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            1237999999999999999999999999999999875321    112223333455688999999999999999999999


Q ss_pred             EEeCcCc---eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194          129 IIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       129 iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                      +|..+..   .....+. +|...|++++|+|.|+ +|++.+.|.+-|+|-.- |+...-.+..        +...|...+
T Consensus       342 lWkt~d~~~w~~~~~iS-GH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~w-g~q~~wHEia--------RPQiHGyDl  410 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVIS-GHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARW-GRQQEWHEIA--------RPQIHGYDL  410 (764)
T ss_pred             EEeccCccceeeccccc-cccccceeeeecCCCC-EEEEeccccceeeeccc-ccccceeeec--------ccccccccc
Confidence            9983322   2233445 9999999999999999 79999999999998755 3322222222        233456788


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce-----------------ee-------------cc---------
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-----------------IS-------------RS---------  246 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~-------------~~---------  246 (375)
                      +++++-+      ....+++|..+..+++|+......                 +.             ..         
T Consensus       411 ~c~~~vn------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~  484 (764)
T KOG1063|consen  411 TCLSFVN------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE  484 (764)
T ss_pred             eeeehcc------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence            9999987      366777888888889998753100                 00             00         


Q ss_pred             ----------------ccc--------------------CCCCCCceeecccccceeeee--------eeecCCcceeEe
Q 017194          247 ----------------KST--------------------TKPLKGSQSTSKVNIRDAEME--------ILDQSGGKRLHL  282 (375)
Q Consensus       247 ----------------~~~--------------------~~~~~~~~~~s~~g~~~~~~~--------~~~~~~~~~~~~  282 (375)
                                      ..+                    +...+.+++.+|+|+.+++.-        ....++......
T Consensus       485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~  564 (764)
T KOG1063|consen  485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ  564 (764)
T ss_pred             cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence                            000                    111234456778888887621        222233334445


Q ss_pred             eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  362 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  362 (375)
                      .+.+.+|.-.|+.++||   |||++|++.+.|+++.+|.........     .-+.....|+.-|.+..|+| ++.+++|
T Consensus       565 ~~~L~~HsLTVT~l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~p-de~~FaT  635 (764)
T KOG1063|consen  565 VQELEGHSLTVTRLAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSP-DEKYFAT  635 (764)
T ss_pred             hheecccceEEEEEEEC---CCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCc-ccceeEE
Confidence            56789999999999999   999999999999999999986642110     11334678999999999999 9999999


Q ss_pred             eeCCCeEEEEecC
Q 017194          363 CDTSKVVKVYSIS  375 (375)
Q Consensus       363 ~~~dg~v~iw~~~  375 (375)
                      +|.|..|++|..+
T Consensus       636 aSRDK~VkVW~~~  648 (764)
T KOG1063|consen  636 ASRDKKVKVWEEP  648 (764)
T ss_pred             ecCCceEEEEecc
Confidence            9999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.5e-32  Score=206.82  Aligned_cols=247  Identities=18%  Similarity=0.242  Sum_probs=216.4

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      |--|+++|.|+.|+.| .++||+|+.||.|++|.+++|.+++.+. +|...|+++.|+.|+..+++++.|.++++.-+++
T Consensus       259 fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS  337 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRD-SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS  337 (508)
T ss_pred             eeecccceEEEeeccc-HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence            4457899999999999 8999999999999999999999999987 8999999999999999999999999999999997


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEEEEeecC
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      +   +.++.+.+|...|+...|.++|..+++++.||+|++|+.++.+++.+|+. +...+|+++-..|.++..+++|...
T Consensus       338 G---K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  338 G---KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             c---hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence            6   55667788999999999999999999999999999999999999999873 3455889999999887789999999


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      ++|++.++. |+.++.+..+..+          .+...+...+|      .|.++.+.+.|+.++.|...++        
T Consensus       415 ntv~imn~q-GQvVrsfsSGkRE----------gGdFi~~~lSp------kGewiYcigED~vlYCF~~~sG--------  469 (508)
T KOG0275|consen  415 NTVYIMNMQ-GQVVRSFSSGKRE----------GGDFINAILSP------KGEWIYCIGEDGVLYCFSVLSG--------  469 (508)
T ss_pred             CeEEEEecc-ceEEeeeccCCcc----------CCceEEEEecC------CCcEEEEEccCcEEEEEEeecC--------
Confidence            999999986 7788887755211          23344566777      7999999999999999998875        


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                      .+...+.-|...+-.++-+   |..+.||+-++||.+++|.
T Consensus       470 --------------------------------~LE~tl~VhEkdvIGl~HH---PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  470 --------------------------------KLERTLPVHEKDVIGLTHH---PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             --------------------------------ceeeeeecccccccccccC---cccchhhhhcccchhhhcC
Confidence                                            4455777888889999888   8889999999999999995

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=4.4e-30  Score=206.02  Aligned_cols=338  Identities=13%  Similarity=0.082  Sum_probs=249.4

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEe---CCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASS---GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~---~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      +..+-..+..|.|++|++.++.-++.+   +.+..+.+||.+.+......+..++.|....|+|.+..++.....+.+.+
T Consensus       147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~F  226 (626)
T KOG2106|consen  147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYF  226 (626)
T ss_pred             eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEE
Confidence            344445678899999998754433333   44567999999998887777777889999999998877777777899999


Q ss_pred             EECCCCCcccccccccCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPASWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      |+++.+...+....++.+ ...|.|++|.+++ -+++|..+|.|.||+..+.+..+... .|.+.|.+++...+|.  |+
T Consensus       227 w~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--ll  302 (626)
T KOG2106|consen  227 WTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LL  302 (626)
T ss_pred             EEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--Ee
Confidence            999987666665555433 3579999999998 57789999999999998888888888 8999999999999995  78


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecC------------CCC--------------CC--CCCCcccCCCceeEEeecCCcc
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFG------------LPE--------------NN--GNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~------------~~~--------------~~--~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      +|+.|..|..||- .-+.++..+++            .++              ..  ..-....|......++.+|   
T Consensus       303 SGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp---  378 (626)
T KOG2106|consen  303 SGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP---  378 (626)
T ss_pred             ecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC---
Confidence            8999999999993 22222222221            111              00  0001112445567788888   


Q ss_pred             ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee---eeeeecCCcceeEeeeeecCCCcc
Q 017194          216 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAA  292 (375)
Q Consensus       216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
                         +...+++++.|+.+++|+  ..+  .........+..+..|.|.| .++.   .|.|-.-+.++...+..-.. ..+
T Consensus       379 ---s~~q~~T~gqdk~v~lW~--~~k--~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~  449 (626)
T KOG2106|consen  379 ---SKNQLLTCGQDKHVRLWN--DHK--LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQ  449 (626)
T ss_pred             ---ChhheeeccCcceEEEcc--CCc--eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCc
Confidence               789999999999999999  222  22333344677888999999 5554   33333333333333333333 889


Q ss_pred             EEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       293 v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      ++.++|+   |+|.+||.|+.|+.|+||.+.....       +..+.-..+..+|+.+.|++ |+++|.+-+.|-.|..|
T Consensus       450 ls~v~ys---p~G~~lAvgs~d~~iyiy~Vs~~g~-------~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  450 LSVVRYS---PDGAFLAVGSHDNHIYIYRVSANGR-------KYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eEEEEEc---CCCCEEEEecCCCeEEEEEECCCCc-------EEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEE
Confidence            9999999   9999999999999999999987642       22222223448999999999 99999999999999999


Q ss_pred             e
Q 017194          373 S  373 (375)
Q Consensus       373 ~  373 (375)
                      .
T Consensus       519 ~  519 (626)
T KOG2106|consen  519 K  519 (626)
T ss_pred             c
Confidence            4

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-30  Score=196.51  Aligned_cols=248  Identities=15%  Similarity=0.160  Sum_probs=193.2

Q ss_pred             ecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194           56 VGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ  134 (375)
Q Consensus        56 ~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (375)
                      ..++.|.+|+|+|. ...+++++.|++||+|+++....... +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            35788999999994 45566889999999999986433333 44556789999999999999999999999999999999


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                      ++. ..+. .|..+|..+.|-+... ..|++|+.|.+|++||++...++.++.++              ..++++..   
T Consensus       104 ~Q~-~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--------------eRvYa~Dv---  164 (347)
T KOG0647|consen  104 GQV-SQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--------------ERVYAADV---  164 (347)
T ss_pred             CCe-eeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--------------ceeeehhc---
Confidence            955 4555 7999999999987654 26899999999999999999999999865              77888877   


Q ss_pred             ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194          214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  293 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  293 (375)
                           ...+++++..++.|.+|+++.+....+..                                      ...-+-.+
T Consensus       165 -----~~pm~vVata~r~i~vynL~n~~te~k~~--------------------------------------~SpLk~Q~  201 (347)
T KOG0647|consen  165 -----LYPMAVVATAERHIAVYNLENPPTEFKRI--------------------------------------ESPLKWQT  201 (347)
T ss_pred             -----cCceeEEEecCCcEEEEEcCCCcchhhhh--------------------------------------cCccccee
Confidence                 47789999999999999998653222111                                      11124467


Q ss_pred             EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee--eecchhhhhhh---hcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194          294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV--QTSINNDLLIK---NINLNKKVNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                      ++++..   +|....|.|+-+|.+.|..+..+...  ...   ++.+.   ..+.-..|++++|+| .-..|++++.||+
T Consensus       202 R~va~f---~d~~~~alGsiEGrv~iq~id~~~~~~nFtF---kCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGt  274 (347)
T KOG0647|consen  202 RCVACF---QDKDGFALGSIEGRVAIQYIDDPNPKDNFTF---KCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGT  274 (347)
T ss_pred             eEEEEE---ecCCceEeeeecceEEEEecCCCCccCceeE---EEeccCCCCCCceEEecceEeec-ccceEEEecCCce
Confidence            889888   78877899999999999999885221  000   11111   111234789999999 5568999999999


Q ss_pred             EEEEe
Q 017194          369 VKVYS  373 (375)
Q Consensus       369 v~iw~  373 (375)
                      +.+||
T Consensus       275 f~FWD  279 (347)
T KOG0647|consen  275 FSFWD  279 (347)
T ss_pred             EEEec
Confidence            99998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-31  Score=193.55  Aligned_cols=258  Identities=18%  Similarity=0.229  Sum_probs=206.3

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeeecCccEEEEEEeC--CCCeEEEEcCCCeEEEE
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~i~iw   85 (375)
                      -..|++.|..+...-- |+.|||++.|++|+|+..+...   .+.++.+|.++|..++|..  -|..|++++.||.|.||
T Consensus         7 dt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            3579999999888877 8999999999999999997654   5788999999999999965  78999999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCc---eeeeeEecCcccceeEEEEeeC---
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPW---  157 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~---  157 (375)
                      .-+++ .......+..|...|++++|.|.  |-.|++++.||.|.|.+.+..   ...+... .|.-.|++++|.|.   
T Consensus        86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~-aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF-AHEIGVNSVSWAPASAP  163 (299)
T ss_pred             ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh-ccccccceeeecCcCCC
Confidence            98877 67777888889999999999995  567999999999999998754   1223344 79999999999986   


Q ss_pred             CC----------cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          158 KP----------WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       158 ~~----------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      |.          +.|++|+.|..|++|+..+++-...-.+.           -|...|+.+++.|..-+  -...+++++
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-----------~H~dwVRDVAwaP~~gl--~~s~iAS~S  230 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-----------GHKDWVRDVAWAPSVGL--PKSTIASCS  230 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-----------hcchhhhhhhhccccCC--CceeeEEec
Confidence            31          25999999999999999886433222111           16789999999994110  235799999


Q ss_pred             cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194          228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                      +||++.||..+......                                  ...   .+......+..+.||   ..|.+
T Consensus       231 qDg~viIwt~~~e~e~w----------------------------------k~t---ll~~f~~~~w~vSWS---~sGn~  270 (299)
T KOG1332|consen  231 QDGTVIIWTKDEEYEPW----------------------------------KKT---LLEEFPDVVWRVSWS---LSGNI  270 (299)
T ss_pred             CCCcEEEEEecCccCcc----------------------------------ccc---ccccCCcceEEEEEe---ccccE
Confidence            99999999887321110                                  112   222346789999999   89999


Q ss_pred             EEEecCCCeEEEEeCCC
Q 017194          308 LISGGNDKLVKVWDCSR  324 (375)
Q Consensus       308 l~s~~~dg~i~iwd~~~  324 (375)
                      |+.++.|+.|.+|.-..
T Consensus       271 LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  271 LAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEEecCCcEEEEEEeCC
Confidence            99999999999997654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-30  Score=205.53  Aligned_cols=265  Identities=16%  Similarity=0.172  Sum_probs=211.0

Q ss_pred             EEEEeC-CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeE
Q 017194           30 FVASSG-EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ  108 (375)
Q Consensus        30 ~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  108 (375)
                      +++++. ....|.+|.+...........-.++|.+++-+|+|.+|+.|+..+.|++|.+.+|..+   ..+..|-..|++
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---~v~~aHYQ~ITc  128 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---NVLSAHYQSITC  128 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHH---HHHHhhccceeE
Confidence            444443 2346888888766554433334678999999999999998889999999999987544   444668899999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCc---------CceeeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCC
Q 017194          109 IVCNPKSSFLACADDGGDVKIIDIR---------QHCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       109 ~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~  178 (375)
                      +.|+.|+.+|++|+.||.|.+|++.         +-+++..|. .|.-+|+++...+.+. ..+++++.|.++++||+..
T Consensus       129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence            9999999999999999999999874         235677888 9999999999877642 3799999999999999999


Q ss_pred             CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS  258 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  258 (375)
                      +..+..+.++              ..+++++++|      .++.+++|+.+|.|.+.++........       .+..-.
T Consensus       208 g~LLlti~fp--------------~si~av~lDp------ae~~~yiGt~~G~I~~~~~~~~~~~~~-------~v~~k~  260 (476)
T KOG0646|consen  208 GVLLLTITFP--------------SSIKAVALDP------AERVVYIGTEEGKIFQNLLFKLSGQSA-------GVNQKG  260 (476)
T ss_pred             ceeeEEEecC--------------CcceeEEEcc------cccEEEecCCcceEEeeehhcCCcccc-------cccccc
Confidence            9999998854              8899999999      699999999999999998875321000       000000


Q ss_pred             ecccccceeeeeeeecCCcceeEeeeeecCCCc--cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhh
Q 017194          259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL  336 (375)
Q Consensus       259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  336 (375)
                      +                 .........+.+|.+  .|+|++++   -||.+|++|+.||.++|||+.+.         .+
T Consensus       261 ~-----------------~~~~t~~~~~~Gh~~~~~ITcLais---~DgtlLlSGd~dg~VcvWdi~S~---------Q~  311 (476)
T KOG0646|consen  261 R-----------------HEENTQINVLVGHENESAITCLAIS---TDGTLLLSGDEDGKVCVWDIYSK---------QC  311 (476)
T ss_pred             c-----------------ccccceeeeeccccCCcceeEEEEe---cCccEEEeeCCCCCEEEEecchH---------HH
Confidence            1                 111234457788888  99999999   99999999999999999999998         67


Q ss_pred             hhhhcccccceeeeeecC
Q 017194          337 LIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       337 ~~~~~~~~~~v~~~~~~~  354 (375)
                      ++.+....++|+.+.+.|
T Consensus       312 iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  312 IRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             HHHHhhhccccceeEeec
Confidence            777777888999998866

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.7e-31  Score=219.09  Aligned_cols=212  Identities=14%  Similarity=0.137  Sum_probs=190.5

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEE-eCCCCeEEEEcCCCeEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCF-KSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~-~~~~~~l~~~~~d~~i~   83 (375)
                      .+..++.|.+.|+.++...+ ++.|++++.|-+|++|+...+  -+..++..|.+.|.|+++ .++...+|+|+-|+.|.
T Consensus        65 ~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence            36778899999999999988 889999999999999999887  568889999999999999 78888999999999999


Q ss_pred             EEECCCCCc-------cccccccc-CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           84 SFDVHMPAS-------WRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        84 iwd~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                      +||+.++..       ......+. ++...|.+++.++.+..|++|+..+.+++||.++++.+..++ +|+..|.++..+
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~  222 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVN  222 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEc
Confidence            999997632       11222333 778899999999999999999999999999999999999999 999999999999


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  235 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  235 (375)
                      ++|. .++++++||+|++||+...+++.++..+             ...+.++..+|      +-..+++|+.||.|..=
T Consensus       223 dDGt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH-------------~e~VWaL~~~~------sf~~vYsG~rd~~i~~T  282 (735)
T KOG0308|consen  223 DDGT-RLLSASSDGTIRLWDLGQQRCLATYIVH-------------KEGVWALQSSP------SFTHVYSGGRDGNIYRT  282 (735)
T ss_pred             CCCC-eEeecCCCceEEeeeccccceeeeEEec-------------cCceEEEeeCC------CcceEEecCCCCcEEec
Confidence            9999 7999999999999999999999998765             66799999998      78999999999999999


Q ss_pred             eCCCc
Q 017194          236 NIESE  240 (375)
Q Consensus       236 d~~~~  240 (375)
                      |+++.
T Consensus       283 dl~n~  287 (735)
T KOG0308|consen  283 DLRNP  287 (735)
T ss_pred             ccCCc
Confidence            99974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.98  E-value=6.2e-29  Score=210.76  Aligned_cols=351  Identities=13%  Similarity=0.172  Sum_probs=248.2

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      +.|+++.--+..-+.++.|+.+|.++||++++++.+.+++++...|+++.=+|--..++.|..+|+|.+++++.++.+..
T Consensus       160 ~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s  239 (910)
T KOG1539|consen  160 DFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS  239 (910)
T ss_pred             CceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence            33887654333335688999999999999999999999999999999999999888999999999999999998765554


Q ss_pred             cccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194           96 LESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      ++.   ..++|++++|..||+. +++|+..|.+.+||++..+.+..++..|.+.|....|.|..+ ++++++.|..+++|
T Consensus       240 Fk~---d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  240 FKQ---DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVW  315 (910)
T ss_pred             EEc---cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEE
Confidence            443   2589999999999876 566777799999999998888777768989999999999988 89999999988877


Q ss_pred             eCCCCCc---ceEEecCC---------------------CC------------CCCCCC----------------cccCC
Q 017194          175 DFSKGRP---NKIVNFGL---------------------PE------------NNGNAG----------------QCYNP  202 (375)
Q Consensus       175 d~~~~~~---~~~~~~~~---------------------~~------------~~~~~~----------------~~~~~  202 (375)
                      =.+++.-   +-+...++                     .+            ......                .-..-
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence            5553321   11111110                     00            000000                00001


Q ss_pred             CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee-eccccc----CCCCCCceeecccccceee---eeeeec
Q 017194          203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKST----TKPLKGSQSTSKVNIRDAE---MEILDQ  274 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~----~~~~~~~~~~s~~g~~~~~---~~~~~~  274 (375)
                      .+|..+++.... .....+.+++--.+..++.|+.+....- ..+...    ......+++.++.|++...   .|..+.
T Consensus       396 p~i~~fa~~~~R-E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~  474 (910)
T KOG1539|consen  396 PPIVEFAFENAR-EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR  474 (910)
T ss_pred             Ccceeeecccch-hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence            122222222110 0001234444445556777777654331 111111    2344567788888887765   344444


Q ss_pred             CCcceeEeeeee---cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee----------------------
Q 017194          275 SGGKRLHLDYSV---GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----------------------  329 (375)
Q Consensus       275 ~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------  329 (375)
                      .+.........+   ..|..+|+.++..   .-++.+++++.+|.+++||........                      
T Consensus       475 fNmQSGi~r~sf~~~~ah~~~V~gla~D---~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  475 FNMQSGIHRKSFGDSPAHKGEVTGLAVD---GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             EEcccCeeecccccCccccCceeEEEec---CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence            444444444445   5899999999998   788899999999999999998765221                      


Q ss_pred             ----------ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          330 ----------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       330 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                                .....++++.+.+|++.|++++|+| ||++|++++.|++|++||+.
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEecc
Confidence                      2234567888999999999999999 99999999999999999984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.6e-31  Score=193.88  Aligned_cols=261  Identities=15%  Similarity=0.117  Sum_probs=207.1

Q ss_pred             eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeC
Q 017194           55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDI  132 (375)
Q Consensus        55 ~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~  132 (375)
                      ..|++-|..+...--|++|++++.|++|+|+..+.+.....+..+.+|.++|..++|..  .|.+||+++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            45888888888877899999999999999999998776788899999999999999976  7899999999999999998


Q ss_pred             cCce--eeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeE
Q 017194          133 RQHC--LYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       133 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                      ++++  ...... .|...|++++|.|.+- .+|++++.||.|.+.+.+..  -....+...            |+..+++
T Consensus        88 ~~g~w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a------------H~~Gvns  154 (299)
T KOG1332|consen   88 ENGRWTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA------------HEIGVNS  154 (299)
T ss_pred             CCCchhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc------------cccccce
Confidence            7763  344555 7999999999999763 37889999999999998764  222223323            6788999


Q ss_pred             EeecCCcccc--------CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcce
Q 017194          208 IAIPDADMLD--------KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR  279 (375)
Q Consensus       208 ~~~~~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~  279 (375)
                      +++.|.....        ..-+.|++|+.|+.|+||+...+                                      .
T Consensus       155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--------------------------------------~  196 (299)
T KOG1332|consen  155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--------------------------------------S  196 (299)
T ss_pred             eeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--------------------------------------c
Confidence            9999852210        01267999999999999999863                                      2


Q ss_pred             eEeeeeecCCCccEEEEEEeecC-CCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC
Q 017194          280 LHLDYSVGGHTAAASCVAFSMFG-ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  358 (375)
Q Consensus       280 ~~~~~~~~~~~~~v~~~~~s~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  358 (375)
                      ......+.+|.+.|+.++|.|.. -...+||+++.||++.||........      .....+......+..+.|+. .|+
T Consensus       197 w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~~~w~vSWS~-sGn  269 (299)
T KOG1332|consen  197 WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPDVVWRVSWSL-SGN  269 (299)
T ss_pred             hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCcceEEEEEec-ccc
Confidence            23344689999999999999521 11258999999999999987743211      12223344678899999999 999


Q ss_pred             cEEEeeCCCeEEEEe
Q 017194          359 NLVVCDTSKVVKVYS  373 (375)
Q Consensus       359 ~l~s~~~dg~v~iw~  373 (375)
                      .|+.++.|+.|.+|.
T Consensus       270 ~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  270 ILAVSGGDNKVTLWK  284 (299)
T ss_pred             EEEEecCCcEEEEEE
Confidence            999999999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=1.7e-30  Score=208.92  Aligned_cols=259  Identities=18%  Similarity=0.256  Sum_probs=196.8

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC-ccccccccc-CCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA-SWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      ...+++|+..|.++++.|.|..|++|+.|..|++||+.... ..+.++.+. .....|.+++|++.+..|++.+.....+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            45567789999999999999999999999999999987421 111222221 2245799999999999999999889999


Q ss_pred             EEeCcCceeeee------------EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCC
Q 017194          129 IIDIRQHCLYKS------------LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGN  195 (375)
Q Consensus       129 iwd~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~  195 (375)
                      ++|-...+....            -+ +|...+++.+|+|..+..|++++.||++++||++..+ .+..++.. +.    
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTK-GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~~----  313 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTK-GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-PA----  313 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccC-CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-cC----
Confidence            999654433322            24 8999999999999998889999999999999998654 33334321 10    


Q ss_pred             CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194          196 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  275 (375)
Q Consensus       196 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~  275 (375)
                         ......+++.+|+|      +++++|+|+.||.|.+|+.......                                
T Consensus       314 ---~g~Rv~~tsC~~nr------dg~~iAagc~DGSIQ~W~~~~~~v~--------------------------------  352 (641)
T KOG0772|consen  314 ---GGKRVPVTSCAWNR------DGKLIAAGCLDGSIQIWDKGSRTVR--------------------------------  352 (641)
T ss_pred             ---CCcccCceeeecCC------CcchhhhcccCCceeeeecCCcccc--------------------------------
Confidence               01235678999999      8999999999999999998652111                                


Q ss_pred             CcceeEeeeeecCCCc--cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc--ccceeeee
Q 017194          276 GGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLC  351 (375)
Q Consensus       276 ~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~  351 (375)
                           .....-.+|..  .|+++.||   +||++|++-+.|+++++||++..+        +.+....+-  ..+-+.++
T Consensus       353 -----p~~~vk~AH~~g~~Itsi~FS---~dg~~LlSRg~D~tLKvWDLrq~k--------kpL~~~tgL~t~~~~tdc~  416 (641)
T KOG0772|consen  353 -----PVMKVKDAHLPGQDITSISFS---YDGNYLLSRGFDDTLKVWDLRQFK--------KPLNVRTGLPTPFPGTDCC  416 (641)
T ss_pred             -----cceEeeeccCCCCceeEEEec---cccchhhhccCCCceeeeeccccc--------cchhhhcCCCccCCCCccc
Confidence                 11223346655  89999999   999999999999999999999986        445444443  34567889


Q ss_pred             ecCCCCCcEEEee------CCCeEEEEe
Q 017194          352 TTPTESENLVVCD------TSKVVKVYS  373 (375)
Q Consensus       352 ~~~~~~~~l~s~~------~dg~v~iw~  373 (375)
                      |+| +.++|++|.      ..|.+.+||
T Consensus       417 FSP-d~kli~TGtS~~~~~~~g~L~f~d  443 (641)
T KOG0772|consen  417 FSP-DDKLILTGTSAPNGMTAGTLFFFD  443 (641)
T ss_pred             cCC-CceEEEecccccCCCCCceEEEEe
Confidence            999 888999875      346677776

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=2.4e-29  Score=215.49  Aligned_cols=277  Identities=17%  Similarity=0.212  Sum_probs=225.1

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      .+|+..-+.++|.|+ |++|++++.||.|++|+...- +...++..+...|.+++-.  +.+|++++.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence            368899999999999 889999999999999998766 5555565577888887764  458999999999999999987


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      .....+..+   .-++.+++|+.+|++++.|+.|-.|++.+..+......++ +|.++|.++.|+|+++ +||+.+.||.
T Consensus        87 ~~~~iL~Rf---tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~-fLAvss~dG~  161 (933)
T KOG1274|consen   87 EEDTILARF---TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGN-FLAVSSCDGK  161 (933)
T ss_pred             Cccceeeee---eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCC-EEEEEecCce
Confidence            665566665   6789999999999999999999999999999999999999 9999999999999999 8999999999


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT  250 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  250 (375)
                      |++||+.++.+...+..-.+.....     ....+..++|+|      ++..+++...|+.|++|+..+......     
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~-----~s~i~~~~aW~P------k~g~la~~~~d~~Vkvy~r~~we~~f~-----  225 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFI-----LSRICTRLAWHP------KGGTLAVPPVDNTVKVYSRKGWELQFK-----  225 (933)
T ss_pred             EEEEEcccchhhhhcccCCcccccc-----ccceeeeeeecC------CCCeEEeeccCCeEEEEccCCceehee-----
Confidence            9999999998877776332222111     134677899999      788888899999999999987532211     


Q ss_pred             CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee
Q 017194          251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT  330 (375)
Q Consensus       251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  330 (375)
                                                       .....+...+..++|+   |.|+|||+++.||.|.|||.++.     
T Consensus       226 ---------------------------------Lr~~~~ss~~~~~~ws---PnG~YiAAs~~~g~I~vWnv~t~-----  264 (933)
T KOG1274|consen  226 ---------------------------------LRDKLSSSKFSDLQWS---PNGKYIAASTLDGQILVWNVDTH-----  264 (933)
T ss_pred             ---------------------------------ecccccccceEEEEEc---CCCcEEeeeccCCcEEEEecccc-----
Confidence                                             1222344558999999   99999999999999999999984     


Q ss_pred             cchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194          331 SINNDLLIKNINLNKKVNWLCTTPTESENLVV  362 (375)
Q Consensus       331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  362 (375)
                          +.    ......|.+++|.| +..-|-.
T Consensus       265 ----~~----~~~~~~Vc~~aw~p-~~n~it~  287 (933)
T KOG1274|consen  265 ----ER----HEFKRAVCCEAWKP-NANAITL  287 (933)
T ss_pred             ----hh----ccccceeEEEecCC-CCCeeEE
Confidence                22    23346789999988 5554433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=204.07  Aligned_cols=248  Identities=17%  Similarity=0.176  Sum_probs=206.9

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ..+.+|.|-.++|+.+.|.++ +..+++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++|
T Consensus       210 ~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW  288 (459)
T ss_pred             hhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence            356778888899999999999 7899999999999999999999999999999999999998777679999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      |+....+.+.+-.    ...+..++.+  ...+++|..|+.|++||+++........ .+ +.|+++..++++. .++++
T Consensus       289 Dl~k~~C~kt~l~----~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~ls~~g~-~lLss  359 (459)
T KOG0288|consen  289 DLQKAYCSKTVLP----GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLDLSMDGL-ELLSS  359 (459)
T ss_pred             hhhhhheeccccc----cccccceEec--ceeeeecccccceEEEeccCCceeeEee-cC-cceeeEeeccCCe-EEeee
Confidence            9987544443332    4566777766  4578899999999999999999998888 54 4999999999998 68888


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.|.++.+.|+++.+....+...         ........+.+.|+|      ++.++++|+.||.|+||++.+++.   
T Consensus       360 sRDdtl~viDlRt~eI~~~~sA~---------g~k~asDwtrvvfSp------d~~YvaAGS~dgsv~iW~v~tgKl---  421 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTKEIRQTFSAE---------GFKCASDWTRVVFSP------DGSYVAAGSADGSVYIWSVFTGKL---  421 (459)
T ss_pred             cCCCceeeeecccccEEEEeecc---------ccccccccceeEECC------CCceeeeccCCCcEEEEEccCceE---
Confidence            99999999999988877776533         111123478899999      899999999999999999998632   


Q ss_pred             ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC--CccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                           ...+...  ...|++++|+   |.|..|++++.++.+.+|.
T Consensus       422 -------------------------------------E~~l~~s~s~~aI~s~~W~---~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  422 -------------------------------------EKVLSLSTSNAAITSLSWN---PSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             -------------------------------------EEEeccCCCCcceEEEEEc---CCCchhhcccCCcceEecC
Confidence                                                 2233322  2369999999   8999999999999999993

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.3e-30  Score=196.97  Aligned_cols=259  Identities=17%  Similarity=0.229  Sum_probs=208.1

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee---eEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ---LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      -.+++|-.|.++|+++.|+|. ...|++|+.|++|+++|+.+....   +.++ ...+|.++.|+|.|.+|+.|.....+
T Consensus       163 PvIRTlYDH~devn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~  240 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTL  240 (430)
T ss_pred             ceEeehhhccCcccceeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCce
Confidence            457889999999999999999 899999999999999999765432   2333 46789999999999999999988999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc-cceeEEEEeeCCCcE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWE  161 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  161 (375)
                      ++||+++-++...-..-..|.+.|+++.+++.+++.++++.||.|++||--+++++.++...|. ..|.+..|..+++ +
T Consensus       241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-y  319 (430)
T KOG0640|consen  241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-Y  319 (430)
T ss_pred             eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-E
Confidence            9999998766655555667899999999999999999999999999999989999998876675 4789999999999 6


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESE  240 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  240 (375)
                      +++.+.|..+++|.+.+++++.++.-.     +.++..   ..-+...|+.      ...+++.-. ..+.+.-||.++.
T Consensus       320 iLsSG~DS~vkLWEi~t~R~l~~YtGA-----g~tgrq---~~rtqAvFNh------tEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  320 ILSSGKDSTVKLWEISTGRMLKEYTGA-----GTTGRQ---KHRTQAVFNH------TEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             EeecCCcceeeeeeecCCceEEEEecC-----Ccccch---hhhhhhhhcC------ccceEEccccccCceeeccccch
Confidence            999999999999999999999888632     001111   1112233433      455555444 3578899999974


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      ...                                       ..--.+|++.++.+.-|   |.+.-+++|+.|..+++|
T Consensus       386 dr~---------------------------------------~l~slgHn~a~R~i~HS---P~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  386 DRV---------------------------------------ALLSLGHNGAVRWIVHS---PVEPAFMTCSDDFRARFW  423 (430)
T ss_pred             hhh---------------------------------------hhcccCCCCCceEEEeC---CCCCceeeecccceeeee
Confidence            321                                       11234899999999999   899999999999999999


Q ss_pred             eCC
Q 017194          321 DCS  323 (375)
Q Consensus       321 d~~  323 (375)
                      --+
T Consensus       424 yrr  426 (430)
T KOG0640|consen  424 YRR  426 (430)
T ss_pred             eec
Confidence            654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.8e-30  Score=210.49  Aligned_cols=299  Identities=16%  Similarity=0.189  Sum_probs=232.1

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-EEEEcCCCeEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSGKEVKSF   85 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~d~~i~iw   85 (375)
                      +-..++||++.|.|+...|. |.+||+|+.||+|+||.+.+|.++.++.. .+.|.+++|+|.+.. +++++.+..+.|-
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence            34567899999999999998 99999999999999999999999999885 679999999997653 3333334445555


Q ss_pred             ECCCCCcc----------------------------------cccccccCCCcceeEEEEcCCCCeEEEEeC---CCcEE
Q 017194           86 DVHMPASW----------------------------------RPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVK  128 (375)
Q Consensus        86 d~~~~~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~  128 (375)
                      +..-|..+                                  .-+...-.|...|..+.|+..|.||++...   ...|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            43322100                                  001111236778999999999999998764   35689


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      |+++...+....|+ ...+.|.++.|+|... +|++++. ..|++||+..+..++.+..+             ...|.++
T Consensus       550 iHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqelvKkL~tg-------------~kwiS~m  613 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQELVKKLLTG-------------SKWISSM  613 (733)
T ss_pred             EEecccccccCchh-hcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHHHHHHHhcC-------------Ceeeeee
Confidence            99998877777776 5678899999999998 5666654 57999999988887777644             4689999


Q ss_pred             eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194          209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG  288 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~  288 (375)
                      +++|      .|..|++|+.|+.+..||+.-..                                       +..+++.-
T Consensus       614 sihp------~GDnli~gs~d~k~~WfDldlss---------------------------------------kPyk~lr~  648 (733)
T KOG0650|consen  614 SIHP------NGDNLILGSYDKKMCWFDLDLSS---------------------------------------KPYKTLRL  648 (733)
T ss_pred             eecC------CCCeEEEecCCCeeEEEEcccCc---------------------------------------chhHHhhh
Confidence            9999      79999999999999999998532                                       34557888


Q ss_pred             CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccc----eeeeeecCCCCCcEEEee
Q 017194          289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK----VNWLCTTPTESENLVVCD  364 (375)
Q Consensus       289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~  364 (375)
                      |...+++++|+   +.-.++++|+.||++.|+--.-.........--.++.+.+|...    |....|+| ..-+|++++
T Consensus       649 H~~avr~Va~H---~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAG  724 (733)
T KOG0650|consen  649 HEKAVRSVAFH---KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAG  724 (733)
T ss_pred             hhhhhhhhhhc---cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecC
Confidence            99999999999   78889999999999999864332211111111345677788776    99999999 777999999


Q ss_pred             CCCeEEEE
Q 017194          365 TSKVVKVY  372 (375)
Q Consensus       365 ~dg~v~iw  372 (375)
                      .||+|++|
T Consensus       725 Ad~tirlf  732 (733)
T KOG0650|consen  725 ADGTIRLF  732 (733)
T ss_pred             CCceEEee
Confidence            99999998

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.7e-30  Score=193.88  Aligned_cols=259  Identities=15%  Similarity=0.223  Sum_probs=215.8

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc------c--------C--------------------
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR------S--------K--------------------   48 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~------~--------~--------------------   48 (375)
                      ++++++.++.||.+.|+|+.|++. +.++++++.|++-.||...      +        +                    
T Consensus       178 Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s  256 (481)
T KOG0300|consen  178 ESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS  256 (481)
T ss_pred             ccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence            578889999999999999999998 8999999999999999721      0        0                    


Q ss_pred             ------ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe
Q 017194           49 ------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD  122 (375)
Q Consensus        49 ------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  122 (375)
                            .++..+.+|...|.+..|...|+.+++++.|.+..+||++++   ..+..+.+|....+.++-+|..+++++.+
T Consensus       257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQrLVvTsS  333 (481)
T KOG0300|consen  257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQRLVVTSS  333 (481)
T ss_pred             CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcceEEEEec
Confidence                  025567789999999999999999999999999999999986   55666778899999999999999999999


Q ss_pred             CCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCccc
Q 017194          123 DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCY  200 (375)
Q Consensus       123 ~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~  200 (375)
                      .|.+.++||++.. ..+..|+ +|...|++..|..+.+  +++|+.|.+|++||+++. .++.++...            
T Consensus       334 rDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtd------------  398 (481)
T KOG0300|consen  334 RDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTD------------  398 (481)
T ss_pred             cCceeEeccchhhcceeeeec-ccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecC------------
Confidence            9999999999843 4577888 9999999999998874  999999999999999875 466777643            


Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                        .+++.++++.      .+..++.-..+..|++||+...+....                                   
T Consensus       399 --S~~NRvavs~------g~~iIAiPhDNRqvRlfDlnG~RlaRl-----------------------------------  435 (481)
T KOG0300|consen  399 --SPANRVAVSK------GHPIIAIPHDNRQVRLFDLNGNRLARL-----------------------------------  435 (481)
T ss_pred             --CccceeEeec------CCceEEeccCCceEEEEecCCCccccC-----------------------------------
Confidence              7889999987      567888888889999999986432210                                   


Q ss_pred             EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                       +...-.+|..-|.|++|..-+|- .-|++++.|..+.-|++...
T Consensus       436 -PrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  436 -PRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             -CcccccccceeeeeeeccccCcc-cccccccccceeeeeEeccc
Confidence             11144588999999999733232 35789999999999998875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.7e-30  Score=217.22  Aligned_cols=284  Identities=15%  Similarity=0.160  Sum_probs=221.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee----eEeee---cCccEEEEEEeC-CCCeEEEEcCCCeEEEEEC
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ----LVTDV---GNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~---~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~   87 (375)
                      ...+.+..+++ -..++.++.. .++||.+......    .....   -.-.+..+.|.. ..++|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~-~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRD-INQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCC-cceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            45566777888 5677777764 7888887644321    11111   112345677763 4578999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ......+.+..+..|+..+.++.|++. ..+|++|+.||+|++||++..+...++. +....|+.+.|+|...+.|+++.
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEec
Confidence            865445667788889999999999995 4678999999999999999999999998 88889999999998877899999


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                      +.|.+++||++...........            |.++|.++.|+|      ++.+||+|+.|+.|+|||+.+.+..   
T Consensus       197 dsG~lqlWDlRqp~r~~~k~~A------------H~GpV~c~nwhP------nr~~lATGGRDK~vkiWd~t~~~~~---  255 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKLTA------------HNGPVLCLNWHP------NREWLATGGRDKMVKIWDMTDSRAK---  255 (839)
T ss_pred             CCceEEEeeccCchhHHHHhhc------------ccCceEEEeecC------CCceeeecCCCccEEEEeccCCCcc---
Confidence            9999999999976543332223            689999999999      8999999999999999999864211   


Q ss_pred             cccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC-cEEEEecC--CCeEEEEeCC
Q 017194          247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGN--DKLVKVWDCS  323 (375)
Q Consensus       247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~s~~~--dg~i~iwd~~  323 (375)
                                                         .+.++. ...+|.+++|-   |+. ..||+++.  |-.|+|||++
T Consensus       256 -----------------------------------~~~tIn-Tiapv~rVkWR---P~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  256 -----------------------------------PKHTIN-TIAPVGRVKWR---PARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             -----------------------------------ceeEEe-ecceeeeeeec---cCccchhhhhhccccceEEEEeec
Confidence                                               111222 24689999999   554 45666654  8889999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK  370 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~  370 (375)
                      ...        -+...+..|...++.++|-..|...|.+++.||.|.
T Consensus       297 RPY--------IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  297 RPY--------IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ccc--------ccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            874        345677889999999999877778899999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.97  E-value=4e-29  Score=205.94  Aligned_cols=291  Identities=15%  Similarity=0.164  Sum_probs=210.7

Q ss_pred             EEEecC--CCCEEEEeCCCCcEEEEecccCce------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           21 CIASRD--RPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        21 ~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      +.|++.  ....||.+.+||.|.++|......      +.....|...|..+.|.|....|++++.|.++++||+++.+.
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            456543  245799999999999999875433      355668999999999999777899999999999999997654


Q ss_pred             ccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCce--------------------e-------eeeEecC
Q 017194           93 WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC--------------------L-------YKSLRAG  144 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--------------------~-------~~~~~~~  144 (375)
                      . -...+.+|.+.|.+++|.|.+ ..|++|+.||.|.|||++...                    .       +...+ .
T Consensus       135 ~-G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k-A  212 (720)
T KOG0321|consen  135 V-GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK-A  212 (720)
T ss_pred             e-cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc-c
Confidence            3 333577899999999999965 568899999999999987321                    0       01111 2


Q ss_pred             cccceeE---EEEeeCCCcEEEEeec-CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC---CCceeEEeecCCcccc
Q 017194          145 HSSICSS---VQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN---PAFVHAIAIPDADMLD  217 (375)
Q Consensus       145 ~~~~v~~---~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~  217 (375)
                      +...+.+   +.+..|.. .|++++. |+.|++||+++..........   ..  .....+   ...+.++....     
T Consensus       213 ~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~---~~--~~~~t~skrs~G~~nL~lDs-----  281 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPR---GS--DKYPTHSKRSVGQVNLILDS-----  281 (720)
T ss_pred             ccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCC---cc--cCccCcccceeeeEEEEecC-----
Confidence            3334444   44555655 7888887 999999999986654443211   00  000011   23455666654     


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc---cEE
Q 017194          218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA---AAS  294 (375)
Q Consensus       218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~  294 (375)
                       .|.+|.+.+.|+.|++|++.+...                                      ..+..+.++..   .+.
T Consensus       282 -sGt~L~AsCtD~sIy~ynm~s~s~--------------------------------------sP~~~~sg~~~~sf~vk  322 (720)
T KOG0321|consen  282 -SGTYLFASCTDNSIYFYNMRSLSI--------------------------------------SPVAEFSGKLNSSFYVK  322 (720)
T ss_pred             -CCCeEEEEecCCcEEEEeccccCc--------------------------------------CchhhccCcccceeeee
Confidence             689999999999999999996321                                      11222222211   222


Q ss_pred             EEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          295 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       295 ~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      + ..+   ||+.+|++|+.|...++|.+.+.+        .....+.+|.-.|++++|.|..-.-++++++|.++++|++
T Consensus       323 s-~lS---pd~~~l~SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  323 S-ELS---PDDCSLLSGSSDEQAYIWVVSSPE--------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             e-ecC---CCCceEeccCCCcceeeeeecCcc--------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            2 245   899999999999999999999986        5566888999999999999966667899999999999997


Q ss_pred             C
Q 017194          375 S  375 (375)
Q Consensus       375 ~  375 (375)
                      +
T Consensus       391 ~  391 (720)
T KOG0321|consen  391 S  391 (720)
T ss_pred             c
Confidence            3

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.1e-29  Score=186.60  Aligned_cols=278  Identities=13%  Similarity=0.135  Sum_probs=205.9

Q ss_pred             eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-CCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEe
Q 017194           55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIID  131 (375)
Q Consensus        55 ~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd  131 (375)
                      .+|.+-|.++.|.+.|+++++++.|++++|||.+. ...+......+.|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            35888999999999999999999999999999654 334566677888999999999976  489999999999999998


Q ss_pred             CcCc---------eeeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC
Q 017194          132 IRQH---------CLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN  201 (375)
Q Consensus       132 ~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (375)
                      -...         ....++. .....|+++.|.|... ..+++++.||.++||+....-.+....+...-..-......+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            5211         2234555 6778999999999653 368999999999999987654444333221000000000012


Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecC-----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                      ..+..++.|+|..+   ...+|++|+.+     +.++||.....                                    
T Consensus       169 ~~~~~CvsWn~sr~---~~p~iAvgs~e~a~~~~~~~Iye~~e~------------------------------------  209 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRM---HEPLIAVGSDEDAPHLNKVKIYEYNEN------------------------------------  209 (361)
T ss_pred             cCcceEEeeccccc---cCceEEEEcccCCccccceEEEEecCC------------------------------------
Confidence            34667889988544   46788888876     57888877653                                    


Q ss_pred             cceeEeeeeecCCCccEEEEEEeec-CCCCcEEEEecCCCeEEEEeCCCceee-----------eecchhhhhhhhcccc
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMF-GERGKYLISGGNDKLVKVWDCSRFQGV-----------QTSINNDLLIKNINLN  344 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~  344 (375)
                      .++...+.++.+|..+|+.++|.|. +..-.+||+++.|| |+||++......           .....-+.+..+.+|.
T Consensus       210 ~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~  288 (361)
T KOG2445|consen  210 GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN  288 (361)
T ss_pred             cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC
Confidence            3455667788899999999999952 11235899999999 999999853211           0111224455678899


Q ss_pred             cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          345 KKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       345 ~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +.|..+.|+- .|..|++.+.||.||+|.-
T Consensus       289 ~~VWrv~wNm-tGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  289 GEVWRVRWNM-TGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             CceEEEEEee-eeeEEeecCCCceeeehhh
Confidence            9999999998 8999999999999999963

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.5e-29  Score=219.24  Aligned_cols=259  Identities=14%  Similarity=0.156  Sum_probs=209.2

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------------------CceeeEeeecCccEEEEEEe
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------------KDVQLVTDVGNGPVTSLCFK   67 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------------------~~~~~~~~~~~~~v~~l~~~   67 (375)
                      +.+.++..|.+.|+|+.|+|| |++||+|++|+.|.||....                  .+....+.+|...|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            345677789999999999999 99999999999999999772                  12467788999999999999


Q ss_pred             CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc--
Q 017194           68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH--  145 (375)
Q Consensus        68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--  145 (375)
                      |++.+|++++.|++|.+||..+.   +.++.+.+|.+.|..+.|.|-|++||+-+.|++|++|++.+....+.+. ++  
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It-~pf~  214 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT-KPFE  214 (942)
T ss_pred             CCccEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec-cchh
Confidence            99999999999999999998864   7777888899999999999999999999999999999987765655554 22  


Q ss_pred             ----ccceeEEEEeeCCCcEEEEee----cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          146 ----SSICSSVQFIPWKPWEVISGG----LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       146 ----~~~v~~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                          ...+..+.|+|||. +|++.-    .-.++.|.+-.+.+.-..+- +            |..++.++.|+|..+..
T Consensus       215 ~~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR~tWk~~~~Lv-G------------H~~p~evvrFnP~lfe~  280 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIERGTWKVDKDLV-G------------HSAPVEVVRFNPKLFER  280 (942)
T ss_pred             hCCCcceeeecccCCCcC-eecchhhccCCcceeEEEecCCceeeeeee-c------------CCCceEEEEeChHHhcc
Confidence                34678899999999 677653    23367777765555444443 3            67899999999975544


Q ss_pred             CCC-----------CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194          218 KTN-----------KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  286 (375)
Q Consensus       218 ~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
                      +..           ..+|+|+.|++|.||.....+..                                     -.++.+
T Consensus       281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-------------------------------------~vi~~l  323 (942)
T KOG0973|consen  281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-------------------------------------FVIHNL  323 (942)
T ss_pred             ccccCCccCCCcceEEEEEecCCccEEEEecCCCCch-------------------------------------hhhhhh
Confidence            333           27899999999999998754221                                     111222


Q ss_pred             cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                        ....|..++|+   |||..|+++|.||+|.+...+..
T Consensus       324 --f~~SI~DmsWs---pdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  324 --FNKSIVDMSWS---PDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             --hcCceeeeeEc---CCCCeEEEEecCCeEEEEEcchH
Confidence              25689999999   99999999999999999998865

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=2.6e-29  Score=208.91  Aligned_cols=239  Identities=16%  Similarity=0.220  Sum_probs=205.7

Q ss_pred             eeeecCCCceeE-EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194            9 RRLRGHKATATC-CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus         9 ~~l~~h~~~i~~-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      ..+++|.+.|.+ +++.+.++-.+++|+.|.+|.+|.....++..++.+|...|.++....++. +++|+.|.++++|..
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI  129 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence            457788888887 888765456799999999999999999999999999999999999888876 999999999999997


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .     +....+.+|+..|+.+..-|++ .+++|+.|.+|++|.-  ++.+++|. +|.+.|+.+++.+++.  |++++.
T Consensus       130 ~-----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~~--flScsN  198 (745)
T KOG0301|consen  130 G-----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDSH--FLSCSN  198 (745)
T ss_pred             h-----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCCC--eEeecC
Confidence            6     4445588999999999999988 8999999999999984  88899999 9999999999999974  999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      ||.|++|++ +++++.++. +            |...++++....      ++..++++++|+++++|+...        
T Consensus       199 Dg~Ir~w~~-~ge~l~~~~-g------------htn~vYsis~~~------~~~~Ivs~gEDrtlriW~~~e--------  250 (745)
T KOG0301|consen  199 DGSIRLWDL-DGEVLLEMH-G------------HTNFVYSISMAL------SDGLIVSTGEDRTLRIWKKDE--------  250 (745)
T ss_pred             CceEEEEec-cCceeeeee-c------------cceEEEEEEecC------CCCeEEEecCCceEEEeecCc--------
Confidence            999999999 677777776 3            578999999666      699999999999999999872        


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                                        +.+.+.-....|+++.+-   ++|. +++|+.||.|+||.....
T Consensus       251 ----------------------------------~~q~I~lPttsiWsa~~L---~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  251 ----------------------------------CVQVITLPTTSIWSAKVL---LNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             ----------------------------------eEEEEecCccceEEEEEe---eCCC-EEEeccCceEEEEEeccc
Confidence                                              333444445578998887   6764 678888999999988754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.6e-30  Score=217.25  Aligned_cols=255  Identities=12%  Similarity=0.176  Sum_probs=184.8

Q ss_pred             eeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc--------CCCcceeEEEEcC---CCCe-
Q 017194           51 QLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN--------YNKEEINQIVCNP---KSSF-  117 (375)
Q Consensus        51 ~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~---~~~~-  117 (375)
                      .+.+. .|.+.|.++.|++||++||+|+.|+.|+||.+..... ..+....        ...+.+..+.-++   .++. 
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccc
Confidence            34455 7999999999999999999999999999999875221 1100000        0000111111111   0111 


Q ss_pred             -EEEEeCCCcEEEEeCc----CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCC
Q 017194          118 -LACADDGGDVKIIDIR----QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN  192 (375)
Q Consensus       118 -l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  192 (375)
                       .-.+..... .+.+..    ..+++..|. +|.+.|.++.|+.++  +|++++.|.+|++|++...+++..|.      
T Consensus       338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~------  407 (712)
T KOG0283|consen  338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS------  407 (712)
T ss_pred             ccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe------
Confidence             111222222 222222    346788889 999999999999987  89999999999999999999999998      


Q ss_pred             CCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeee
Q 017194          193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL  272 (375)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~  272 (375)
                              |+..|+|++|+|.     |.+++++|+-||.|+||++...+..                             
T Consensus       408 --------HndfVTcVaFnPv-----DDryFiSGSLD~KvRiWsI~d~~Vv-----------------------------  445 (712)
T KOG0283|consen  408 --------HNDFVTCVAFNPV-----DDRYFISGSLDGKVRLWSISDKKVV-----------------------------  445 (712)
T ss_pred             --------cCCeeEEEEeccc-----CCCcEeecccccceEEeecCcCeeE-----------------------------
Confidence                    7899999999998     9999999999999999999863211                             


Q ss_pred             ecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeee
Q 017194          273 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  352 (375)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  352 (375)
                                  ....-..-|++++|+   |||++.+.|+.+|.+++|+....+..+.....-.-..-..|. .|+++.|
T Consensus       446 ------------~W~Dl~~lITAvcy~---PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~  509 (712)
T KOG0283|consen  446 ------------DWNDLRDLITAVCYS---PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQF  509 (712)
T ss_pred             ------------eehhhhhhheeEEec---cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEe
Confidence                        222224779999999   999999999999999999999876553221111111122233 8999999


Q ss_pred             cCCCCCcEEEeeCCCeEEEEec
Q 017194          353 TPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       353 ~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .|.+...+++.+.|..|||+|.
T Consensus       510 ~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  510 FPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             cCCCCCeEEEecCCCceEEEec
Confidence            9877777888899999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.4e-28  Score=174.27  Aligned_cols=249  Identities=16%  Similarity=0.197  Sum_probs=201.0

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-----eeEeeecCccEEEEEEeCC----CCeEEEEcC-CC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKSG----NEDIIYVSS-GK   80 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~v~~l~~~~~----~~~l~~~~~-d~   80 (375)
                      -+.|++.|+|.+|+|+ |++||+|+.|.+|++.-++...+     ...+..|.+.|..++|..+    +..|++++. |.
T Consensus        85 ~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             ccccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            4579999999999999 99999999999999987664332     4567789999999999643    456666553 56


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-C-----cccceeEEEE
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-G-----HSSICSSVQF  154 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-----~~~~v~~~~~  154 (375)
                      .|++-|...+   +.+..+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-...+.++.. -     ..+.|.+++.
T Consensus       164 ~iy~tdc~~g---~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  164 KIYITDCGRG---QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             eEEEeecCCC---CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            7777787754   5666777788888876 344677999999999999999998777776642 1     2357999999


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                      .|.|+ +|++|-.|....+||++.++.++.+..             |...|.++.|+|      ...++++++.|..|++
T Consensus       240 dpsgr-ll~sg~~dssc~lydirg~r~iq~f~p-------------hsadir~vrfsp------~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  240 DPSGR-LLASGHADSSCMLYDIRGGRMIQRFHP-------------HSADIRCVRFSP------GAHYLLTCSYDMKIKL  299 (350)
T ss_pred             CCCcc-eeeeccCCCceEEEEeeCCceeeeeCC-------------CccceeEEEeCC------CceEEEEecccceEEE
Confidence            99998 899999999999999999999998863             478899999999      6889999999999999


Q ss_pred             EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND  314 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d  314 (375)
                      -|+......                                    .-.+..+..|+..+..+.|+   |..--+++.+.|
T Consensus       300 tdlqgdla~------------------------------------el~~~vv~ehkdk~i~~rwh---~~d~sfisssad  340 (350)
T KOG0641|consen  300 TDLQGDLAH------------------------------------ELPIMVVAEHKDKAIQCRWH---PQDFSFISSSAD  340 (350)
T ss_pred             eecccchhh------------------------------------cCceEEEEeccCceEEEEec---CccceeeeccCc
Confidence            999853111                                    01223556788889999999   777788999999


Q ss_pred             CeEEEEeCC
Q 017194          315 KLVKVWDCS  323 (375)
Q Consensus       315 g~i~iwd~~  323 (375)
                      .++.+|-++
T Consensus       341 kt~tlwa~~  349 (350)
T KOG0641|consen  341 KTATLWALN  349 (350)
T ss_pred             ceEEEeccC
Confidence            999999764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=1.5e-27  Score=197.99  Aligned_cols=272  Identities=17%  Similarity=0.160  Sum_probs=195.6

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN  107 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  107 (375)
                      ..+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+.   .+ ..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~-~~~~   76 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SG-PDPE   76 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CC-CCcc
Confidence            578899999999999999999888887654 46789999999876 556778999999998765433332   22 3356


Q ss_pred             EEEEcCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC-eEEEeeCCCCCcceEE
Q 017194          108 QIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-KLVMWDFSKGRPNKIV  185 (375)
Q Consensus       108 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~  185 (375)
                      .++|+|+++.++++ ..++.+++||+++.+.+..+.  +...+.+++|+|++. +++++..++ .+.+||.++++.....
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~  153 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNV  153 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEE
Confidence            78999999877655 468999999999888777776  334578899999998 677777664 5778899887766554


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI  264 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~  264 (375)
                      ...              .....++|+|      ++++++++ ..++.|++||+.+++.........              
T Consensus       154 ~~~--------------~~~~~~~~s~------dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~--------------  199 (300)
T TIGR03866       154 LVD--------------QRPRFAEFTA------DGKELWVSSEIGGTVSVIDVATRKVIKKITFEI--------------  199 (300)
T ss_pred             EcC--------------CCccEEEECC------CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc--------------
Confidence            422              3456789988      78877655 468999999999754322111000              


Q ss_pred             ceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE-ecCCCeEEEEeCCCceeeeecchhhhhhhhccc
Q 017194          265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL  343 (375)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  343 (375)
                                         ............++|+   |++++++. .+.++.|.+||..+++         .... ..+
T Consensus       200 -------------------~~~~~~~~~~~~i~~s---~dg~~~~~~~~~~~~i~v~d~~~~~---------~~~~-~~~  247 (300)
T TIGR03866       200 -------------------PGVHPEAVQPVGIKLT---KDGKTAFVALGPANRVAVVDAKTYE---------VLDY-LLV  247 (300)
T ss_pred             -------------------cccccccCCccceEEC---CCCCEEEEEcCCCCeEEEEECCCCc---------EEEE-EEe
Confidence                               0000001123467888   89987544 4557789999998873         2222 133


Q ss_pred             ccceeeeeecCCCCCcEEEe-eCCCeEEEEecC
Q 017194          344 NKKVNWLCTTPTESENLVVC-DTSKVVKVYSIS  375 (375)
Q Consensus       344 ~~~v~~~~~~~~~~~~l~s~-~~dg~v~iw~~~  375 (375)
                      ...+.+++|+| ++++|+++ +.+|.|++||++
T Consensus       248 ~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       248 GQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CCCcceEEECC-CCCEEEEEcCCCCeEEEEECC
Confidence            45788999999 88888876 468999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=8.9e-28  Score=192.91  Aligned_cols=334  Identities=16%  Similarity=0.198  Sum_probs=234.8

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCC--------cEEEEecccCceeeEeeecCccEEEEEEeC--CCCeEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDG--------CICWFDLRSKDVQLVTDVGNGPVTSLCFKS--GNEDIIYV   76 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~--------~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~   76 (375)
                      ..+.+.||+..|.|++.+|+ .-.+++|-.-|        .+++||..+-..+..+..-...|.+++|++  .|.+|...
T Consensus        96 ~Qr~y~GH~ddikc~~vHPd-ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPD-RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             hcccccCCCCceEEEeecCC-ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence            45667899999999999998 67777775544        499999888877888877788999999987  34555554


Q ss_pred             c--CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee---eEecCcccceeE
Q 017194           77 S--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK---SLRAGHSSICSS  151 (375)
Q Consensus        77 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~  151 (375)
                      .  .+..+.+||...+.....++..   +..|....|+|.+..+++....+.+.+|+.+.+...+   .|.......|.+
T Consensus       175 D~s~~h~lSVWdWqk~~~~~~vk~s---ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~  251 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLGPVKTS---NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLC  251 (626)
T ss_pred             cCCCccccchhhchhhhccCcceec---cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEE
Confidence            3  3457899999876666666554   6778899999977776666677999999998775543   333123468999


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV  231 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~  231 (375)
                      ++|.++|+  +++|.++|.|.+|+....+..+... .            |++.|.+++.-.      +|.+|- |+.|..
T Consensus       252 v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~-a------------H~ggv~~L~~lr------~GtllS-GgKDRk  309 (626)
T KOG2106|consen  252 VTFLENGD--VITGDSGGNILIWSKGTNRISKQVH-A------------HDGGVFSLCMLR------DGTLLS-GGKDRK  309 (626)
T ss_pred             EEEcCCCC--EEeecCCceEEEEeCCCceEEeEee-e------------cCCceEEEEEec------CccEee-cCccce
Confidence            99999996  8999999999999998776666665 4            689999999987      566555 999999


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeee----ecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                      |..||-.-.+...........+++.++-...+  +......    .......  ......+|......++.+   |+...
T Consensus       310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~--f~~~v~gh~delwgla~h---ps~~q  382 (626)
T KOG2106|consen  310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENG--FTLTVQGHGDELWGLATH---PSKNQ  382 (626)
T ss_pred             EEeccccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCC--ceEEEEecccceeeEEcC---CChhh
Confidence            99999332222222222222334443333222  2221111    1111111  223456788899999999   88889


Q ss_pred             EEEecCCCeEEEEeCCCceeee-----------------------------ecchhhhhhhhcccccceeeeeecCCCCC
Q 017194          308 LISGGNDKLVKVWDCSRFQGVQ-----------------------------TSINNDLLIKNINLNKKVNWLCTTPTESE  358 (375)
Q Consensus       308 l~s~~~dg~i~iwd~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  358 (375)
                      +++++.|+.+++|+-....-..                             .......+.. .....+++.+.++| +|.
T Consensus       383 ~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~ysp-~G~  460 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVRYSP-DGA  460 (626)
T ss_pred             eeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEE-EecCCceEEEEEcC-CCC
Confidence            9999999999999922211000                             0011111211 22267899999999 999


Q ss_pred             cEEEeeCCCeEEEEecC
Q 017194          359 NLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       359 ~l~s~~~dg~v~iw~~~  375 (375)
                      +||.|+.|+.|++|.++
T Consensus       461 ~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  461 FLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             EEEEecCCCeEEEEEEC
Confidence            99999999999999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.4e-28  Score=184.24  Aligned_cols=287  Identities=16%  Similarity=0.213  Sum_probs=214.3

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE   97 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   97 (375)
                      -.|+.|++. |.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..+...+.+.
T Consensus        26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            788999999 9999999999999999999999888999999999999999999999999999999999999887655554


Q ss_pred             cccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEecC----cccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           98 SYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAG----HSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      -    ..+|+.+.|+|..+ ..++.-.+..-.+-++..++. ..+...    .+....+..|.+.|+ ++++|...|.+.
T Consensus       105 f----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkll  178 (405)
T KOG1273|consen  105 F----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLL  178 (405)
T ss_pred             c----cCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCC-EEEEecCcceEE
Confidence            3    68999999999543 333333444455555544221 111100    111223346888898 799999999999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      ++|..+.+++..++..            ....|..+.++.      .|+.|+.-+.|..|+.|+++.-....+       
T Consensus       179 v~~a~t~e~vas~rit------------s~~~IK~I~~s~------~g~~liiNtsDRvIR~ye~~di~~~~r-------  233 (405)
T KOG1273|consen  179 VYDAETLECVASFRIT------------SVQAIKQIIVSR------KGRFLIINTSDRVIRTYEISDIDDEGR-------  233 (405)
T ss_pred             EEecchheeeeeeeec------------hheeeeEEEEec------cCcEEEEecCCceEEEEehhhhcccCc-------
Confidence            9999999999888755            236788899988      799999999999999999884211000       


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecC--CCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeee
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQ  329 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~  329 (375)
                                              .......+++..  ....-.++.||   .+|.|+++++. ...++||.-..+    
T Consensus       234 ------------------------~~e~e~~~K~qDvVNk~~Wk~ccfs---~dgeYv~a~s~~aHaLYIWE~~~G----  282 (405)
T KOG1273|consen  234 ------------------------DGEVEPEHKLQDVVNKLQWKKCCFS---GDGEYVCAGSARAHALYIWEKSIG----  282 (405)
T ss_pred             ------------------------cCCcChhHHHHHHHhhhhhhheeec---CCccEEEeccccceeEEEEecCCc----
Confidence                                    000111111111  12344667888   89999988764 567999999998    


Q ss_pred             ecchhhhhhhhcccc-cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          330 TSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                           .+++.+.|.. .....+.|+| -...+++- ..|.|++|..
T Consensus       283 -----sLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  283 -----SLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             -----ceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence                 6777777766 5678899998 44456666 7789999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.1e-27  Score=194.89  Aligned_cols=288  Identities=17%  Similarity=0.209  Sum_probs=228.7

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-eeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      -.++|.+|+|+.+ .+.||.+-.||.|.||++..+=. ...+.++ +..|.+++|++.+ .|++.+.+|.|.-||+.+.+
T Consensus        24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCc
Confidence            4688999999998 78899999999999999987543 4445554 5789999999654 68888999999999999765


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee--eEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK--SLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      ....+..   ..+.|++++.+|.+..++.|++||.+..++...++...  .|. -.++.|.++.|+|++. .+++|+.||
T Consensus       102 ~~~~~d~---~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~-rq~sRvLslsw~~~~~-~i~~Gs~Dg  176 (691)
T KOG2048|consen  102 QKYNIDS---NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM-RQKSRVLSLSWNPTGT-KIAGGSIDG  176 (691)
T ss_pred             eeEEecC---CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc-cccceEEEEEecCCcc-EEEecccCc
Confidence            5444444   47899999999999999999999988888887765533  344 4568999999999997 699999999


Q ss_pred             eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc
Q 017194          170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST  249 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  249 (375)
                      .|++||..++..+.....+.....     ...+.-|.++.+-.       ...+++|...|.|.+||...+         
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~-----k~~~~iVWSv~~Lr-------d~tI~sgDS~G~V~FWd~~~g---------  235 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLS-----KREPTIVWSVLFLR-------DSTIASGDSAGTVTFWDSIFG---------  235 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccc-----cCCceEEEEEEEee-------cCcEEEecCCceEEEEcccCc---------
Confidence            999999999988774432210000     00234578888874       778999999999999999875         


Q ss_pred             CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee
Q 017194          250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  329 (375)
Q Consensus       250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  329 (375)
                                                     .++.....|...|.+++..   +++.++++++.|+.|.-|...+.....
T Consensus       236 -------------------------------TLiqS~~~h~adVl~Lav~---~~~d~vfsaGvd~~ii~~~~~~~~~~w  281 (691)
T KOG2048|consen  236 -------------------------------TLIQSHSCHDADVLALAVA---DNEDRVFSAGVDPKIIQYSLTTNKSEW  281 (691)
T ss_pred             -------------------------------chhhhhhhhhcceeEEEEc---CCCCeEEEccCCCceEEEEecCCccce
Confidence                                           4555777899999999999   888999999999999999888764310


Q ss_pred             ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194          330 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  371 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i  371 (375)
                           ........|...|.+++..+ +  .|++|+.|..+.+
T Consensus       282 -----v~~~~r~~h~hdvrs~av~~-~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  282 -----VINSRRDLHAHDVRSMAVIE-N--ALISGGRDFTLAI  315 (691)
T ss_pred             -----eeeccccCCcccceeeeeec-c--eEEecceeeEEEE
Confidence                 12334457888999999977 4  8999999998876

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.97  E-value=4.5e-28  Score=192.18  Aligned_cols=298  Identities=16%  Similarity=0.204  Sum_probs=217.1

Q ss_pred             eeeecCCCceeEEEEecCCC-CEEEEeCCCCcEEEEecccCce----eeEeeecCccEEEEEEeCCC-CeEEEEcCCCeE
Q 017194            9 RRLRGHKATATCCIASRDRP-GFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEV   82 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i   82 (375)
                      ...+-|.++|++++|+|... +++|+|..-|.|-+||+.+.+.    +..+..|..+|.+|.|+|.. ..+++.+.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            45567899999999999855 6899999999999999953332    56677899999999999854 578999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEEEEeeCCCcE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ++-|++.... ..+.........+..+.|+.+...++.+..=|...+||.+++.. ...+. .|...|.+++++|..+++
T Consensus       260 R~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  260 RLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeecchhh-HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchh
Confidence            9999986533 33333322345678889998888888888878999999997654 66666 788899999999999999


Q ss_pred             EEEeecCCeEEEeeCCCCCcceE---EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKI---VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      |++++.|++++|||++.-.....   ..+.            |...|.+..|+|      .+..|++.+.|..|+|||..
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~------------HrrsV~sAyFSP------s~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLP------------HRRSVNSAYFSP------SGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceeccc------------ccceeeeeEEcC------CCCceEeeccCCceEEeecc
Confidence            99999999999999987443332   1122            678999999999      56669999999999999985


Q ss_pred             C---cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194          239 S---ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK  315 (375)
Q Consensus       239 ~---~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg  315 (375)
                      -   ...+...                                 +.--.....|- ......|.   |+..++++|-.-.
T Consensus       400 ~~sa~~~p~~~---------------------------------I~Hn~~t~Rwl-T~fKA~W~---P~~~li~vg~~~r  442 (498)
T KOG4328|consen  400 CISAKDEPLGT---------------------------------IPHNNRTGRWL-TPFKAAWD---PDYNLIVVGRYPR  442 (498)
T ss_pred             cccccCCccce---------------------------------eeccCcccccc-cchhheeC---CCccEEEEeccCc
Confidence            1   1000000                                 00000000111 23345788   8999999999999


Q ss_pred             eEEEEeCCCceeeeecchhhhhhhhc-ccccceee-eeecCCCCCcEEE-eeCCCeEEEEe
Q 017194          316 LVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNW-LCTTPTESENLVV-CDTSKVVKVYS  373 (375)
Q Consensus       316 ~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~~~~~~~l~s-~~~dg~v~iw~  373 (375)
                      .|-|+|-..++.         +..+. .....|.+ ..|+| -...+++ ++..|.|+||.
T Consensus       443 ~IDv~~~~~~q~---------v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  443 PIDVFDGNGGQM---------VCELHDPESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             ceeEEcCCCCEE---------eeeccCccccccccceeecc-cccceeccCCccceEEEEe
Confidence            999999998842         22222 22224444 47888 5554555 45778999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=2.1e-27  Score=197.59  Aligned_cols=297  Identities=12%  Similarity=0.129  Sum_probs=236.5

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +.||++.|+++.|+|. +..|++++.|.++.+|...+..-       +..+.+.........|+|+++.+++-+..|-.+
T Consensus       263 l~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            4699999999999999 78899999999999999875532       122223356688999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc----------------------------
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH----------------------------  135 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------  135 (375)
                      +|..+....+.......+|...|.+++|.|.|.+|++.+.|.+-|++-.-..                            
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9996666666777788899999999999999999999999988887632200                            


Q ss_pred             -------eeee---------------------------------------------------------------------
Q 017194          136 -------CLYK---------------------------------------------------------------------  139 (375)
Q Consensus       136 -------~~~~---------------------------------------------------------------------  139 (375)
                             +.++                                                                     
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence                   0000                                                                     


Q ss_pred             ------------------eEecCcccceeEEEEeeCCCcEEEEeecC-----CeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194          140 ------------------SLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNA  196 (375)
Q Consensus       140 ------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~  196 (375)
                                        .+. +|...|.+++.+|+++ ++++++..     ..|++|+..+-.....+..         
T Consensus       502 ePP~EdqLq~~tLwPEv~KLY-GHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~---------  570 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLY-GHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEG---------  570 (764)
T ss_pred             CCChHHHHHHhccchhhHHhc-cCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecc---------
Confidence                              234 7888999999999998 89988754     3689999988877776663         


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                          |.-.|+.++|+|      |+++|++.+.|.++.+|........                                 
T Consensus       571 ----HsLTVT~l~FSp------dg~~LLsvsRDRt~sl~~~~~~~~~---------------------------------  607 (764)
T KOG1063|consen  571 ----HSLTVTRLAFSP------DGRYLLSVSRDRTVSLYEVQEDIKD---------------------------------  607 (764)
T ss_pred             ----cceEEEEEEECC------CCcEEEEeecCceEEeeeeecccch---------------------------------
Confidence                578899999999      8999999999999999998643111                                 


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh-hhcccccceeeeeecCC
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCTTPT  355 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~  355 (375)
                      .   ......+.|..-|.+..|+   |++++++|+|.|.+|++|........      .+.. ....+...|+.+++.|.
T Consensus       608 e---~~fa~~k~HtRIIWdcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~------~i~~~a~~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  608 E---FRFACLKAHTRIIWDCSWS---PDEKYFATASRDKKVKVWEEPDLRDK------YISRFACLKFSLAVTAVAYLPV  675 (764)
T ss_pred             h---hhhccccccceEEEEcccC---cccceeEEecCCceEEEEeccCchhh------hhhhhchhccCCceeeEEeecc
Confidence            0   0122477899999999999   99999999999999999999886211      2222 45578899999999885


Q ss_pred             CCC----cEEEeeCCCeEEEEec
Q 017194          356 ESE----NLVVCDTSKVVKVYSI  374 (375)
Q Consensus       356 ~~~----~l~s~~~dg~v~iw~~  374 (375)
                      +..    .++.|-..|.|.+|..
T Consensus       676 ~~~e~~~~vavGle~GeI~l~~~  698 (764)
T KOG1063|consen  676 DHNEKGDVVAVGLEKGEIVLWRR  698 (764)
T ss_pred             ccccccceEEEEecccEEEEEec
Confidence            433    5677889999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.6e-29  Score=210.58  Aligned_cols=248  Identities=15%  Similarity=0.286  Sum_probs=196.0

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc-c---CCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeC
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-N---YNKEEINQIVCNP-KSSFLACADDGGDVKIIDI  132 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~  132 (375)
                      .....+|..+++-..++.++ ...+++|.+............ .   .-...+..+.|.. +.++||+++.+|.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            34566777788888888877 456777776543221111111 1   1123456677875 5678999999999999999


Q ss_pred             cC---ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          133 RQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       133 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      ..   .+.+..|. .|...+.++.|++..+++|++|+.||.|++||++..+....+...             ...|..+.
T Consensus       118 nk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-------------SESiRDV~  183 (839)
T KOG0269|consen  118 NKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-------------SESIRDVK  183 (839)
T ss_pred             CccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc-------------chhhhcee
Confidence            86   56677888 999999999999999989999999999999999988877666533             57899999


Q ss_pred             ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194          210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH  289 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
                      |+|.     .+..++++...|.+++||++...                                       ++...+.+|
T Consensus       184 fsp~-----~~~~F~s~~dsG~lqlWDlRqp~---------------------------------------r~~~k~~AH  219 (839)
T KOG0269|consen  184 FSPG-----YGNKFASIHDSGYLQLWDLRQPD---------------------------------------RCEKKLTAH  219 (839)
T ss_pred             eccC-----CCceEEEecCCceEEEeeccCch---------------------------------------hHHHHhhcc
Confidence            9996     68999999999999999999642                                       556688999


Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee--CCC
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD--TSK  367 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg  367 (375)
                      .++|.++.|+   |++.+|||||.|+.|+|||+.+...        .......-..+|..+.|-|.....|++++  .|-
T Consensus       220 ~GpV~c~nwh---Pnr~~lATGGRDK~vkiWd~t~~~~--------~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dt  288 (839)
T KOG0269|consen  220 NGPVLCLNWH---PNREWLATGGRDKMVKIWDMTDSRA--------KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDT  288 (839)
T ss_pred             cCceEEEeec---CCCceeeecCCCccEEEEeccCCCc--------cceeEEeecceeeeeeeccCccchhhhhhccccc
Confidence            9999999999   9999999999999999999997632        11222334578999999997777788876  788


Q ss_pred             eEEEEecC
Q 017194          368 VVKVYSIS  375 (375)
Q Consensus       368 ~v~iw~~~  375 (375)
                      .|+|||+.
T Consensus       289 sV~VWDvr  296 (839)
T KOG0269|consen  289 SVHVWDVR  296 (839)
T ss_pred             eEEEEeec
Confidence            99999973

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-26  Score=191.27  Aligned_cols=211  Identities=18%  Similarity=0.194  Sum_probs=176.3

Q ss_pred             CeeeecCC-CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            8 PRRLRGHK-ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         8 ~~~l~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ...+.|++ +.|.+++|++  +..|.+.+.+|.|.-||+.++++...++...+.|++++.+|.+..++.|+.||.+..++
T Consensus        61 ~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   61 EPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             eEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence            44566654 5699999995  46788999999999999999999999999999999999999999999999999888888


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE-------ecCcccceeEEEEeeCCC
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL-------RAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~  159 (375)
                      ...++ +..-..+...++.|.++.|+|++..|+.|+.||.|++||..++..+...       ......-|+++.|..++ 
T Consensus       139 ~~p~~-I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-  216 (691)
T KOG2048|consen  139 IGPDK-ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-  216 (691)
T ss_pred             cCCce-EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence            77543 3333344444689999999999999999999999999999988766522       10133468888888777 


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                       .+++|...|+|.+||...+..++.+..             |...|.+++..+      ++.++++++.|+.|..|...+
T Consensus       217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~-------------h~adVl~Lav~~------~~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  217 -TIASGDSAGTVTFWDSIFGTLIQSHSC-------------HDADVLALAVAD------NEDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             -cEEEecCCceEEEEcccCcchhhhhhh-------------hhcceeEEEEcC------CCCeEEEccCCCceEEEEecC
Confidence             699999999999999999999888875             478899999998      789999999999999998877


Q ss_pred             cce
Q 017194          240 ELN  242 (375)
Q Consensus       240 ~~~  242 (375)
                      ...
T Consensus       277 ~~~  279 (691)
T KOG2048|consen  277 NKS  279 (691)
T ss_pred             Ccc
Confidence            643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.5e-28  Score=191.41  Aligned_cols=273  Identities=14%  Similarity=0.176  Sum_probs=208.4

Q ss_pred             eCCC-CcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCC-CeEEEEECCCCCcccccccccCCCcceeEEE
Q 017194           34 SGED-GCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIV  110 (375)
Q Consensus        34 ~~~d-~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  110 (375)
                      ++.| .++.+||+.+|....++++. ...-.++..- .+.+++++... ..|.+|.+...........   -+++|.+++
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~   88 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALA   88 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc---cccceeeee
Confidence            3444 56999999999988888764 2222222221 23567766554 4889999875333221112   267899999


Q ss_pred             EcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC---------CCc
Q 017194          111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---------GRP  181 (375)
Q Consensus       111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~---------~~~  181 (375)
                      -+|.|.+++.|+..|.|++|.+.+|..+..+. +|-..|+++.|+.||. +|++|+.||.|.+|++..         .++
T Consensus        89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p  166 (476)
T KOG0646|consen   89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKP  166 (476)
T ss_pred             cCCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccc
Confidence            99999999999899999999999999999998 9999999999999999 899999999999998742         233


Q ss_pred             ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194          182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~  261 (375)
                      +..+. .            |.-+|+.+.+.+    .+...++++++.|.++++||+..+...                  
T Consensus       167 ~~~f~-~------------HtlsITDl~ig~----Gg~~~rl~TaS~D~t~k~wdlS~g~LL------------------  211 (476)
T KOG0646|consen  167 LHIFS-D------------HTLSITDLQIGS----GGTNARLYTASEDRTIKLWDLSLGVLL------------------  211 (476)
T ss_pred             eeeec-c------------CcceeEEEEecC----CCccceEEEecCCceEEEEEeccceee------------------
Confidence            33333 1            567899998876    223578999999999999999975322                  


Q ss_pred             cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee-------cchh
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-------SINN  334 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~  334 (375)
                                            .++. ....+.+++.+   |-+..+..|+.+|.|.+.++........       ...+
T Consensus       212 ----------------------lti~-fp~si~av~lD---pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~  265 (476)
T KOG0646|consen  212 ----------------------LTIT-FPSSIKAVALD---PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN  265 (476)
T ss_pred             ----------------------EEEe-cCCcceeEEEc---ccccEEEecCCcceEEeeehhcCCccccccccccccccc
Confidence                                  2222 24678999999   8899999999999999998876542211       1222


Q ss_pred             hhhhhhccccc--ceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          335 DLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       335 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .....+.+|.+  .|+|++.+- ||..|++|+.||.|+|||+
T Consensus       266 t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  266 TQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             ceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEec
Confidence            34456778888  999999998 9999999999999999997

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.8e-27  Score=179.70  Aligned_cols=246  Identities=15%  Similarity=0.134  Sum_probs=188.9

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC  136 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (375)
                      ....|.++.|+|.+..|++++.||.+++||......    ...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence            367899999999999999999999999999986422    22223588999999987 4588999999999999999887


Q ss_pred             eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194          137 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML  216 (375)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (375)
                      ....-  .|..+++++.+++... .+++|+.|++|++||.+.......+..              ...|.++..      
T Consensus        87 ~~~ig--th~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~--------------~kkVy~~~v------  143 (323)
T KOG1036|consen   87 EDQIG--THDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQ--------------GKKVYCMDV------  143 (323)
T ss_pred             ceeec--cCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccccc--------------CceEEEEec------
Confidence            65544  5999999999998776 799999999999999998666655553              357888888      


Q ss_pred             cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194          217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV  296 (375)
Q Consensus       217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  296 (375)
                        .+..|++|+.+..+.+||+++.......                                      .-..-+..++++
T Consensus       144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~--------------------------------------reS~lkyqtR~v  183 (323)
T KOG1036|consen  144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQR--------------------------------------RESSLKYQTRCV  183 (323)
T ss_pred             --cCCEEEEeecCceEEEEEcccccchhhh--------------------------------------ccccceeEEEEE
Confidence              5889999999999999999975433211                                      111224578999


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeCCCceeee----ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      ++-   |++.=.+.++-||.|.+=.++..+..+    ..........-...-.+|++++|+| -...|+||+.||.|.+|
T Consensus       184 ~~~---pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~W  259 (323)
T KOG1036|consen  184 ALV---PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIW  259 (323)
T ss_pred             EEe---cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEc
Confidence            998   888888999999999887776652111    0001111111111234899999999 56789999999999999


Q ss_pred             ec
Q 017194          373 SI  374 (375)
Q Consensus       373 ~~  374 (375)
                      |+
T Consensus       260 d~  261 (323)
T KOG1036|consen  260 DL  261 (323)
T ss_pred             cC
Confidence            96

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.5e-29  Score=192.27  Aligned_cols=242  Identities=11%  Similarity=0.175  Sum_probs=203.5

Q ss_pred             eeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI  129 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (375)
                      +..+.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+   ...+..+..|.+.|..+++..  ..+++++.|.+|+.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq---R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ---RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhh---hhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            55678999999999999977 6799999999999999985   456677788899999999987  57888889999999


Q ss_pred             EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      |.++. ..+.++.  ....+..+.-+..+. .++++++  .|.|||.....++..+..+             ...|.++.
T Consensus       134 wk~~~-~p~~til--g~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG-------------~Dti~svk  194 (433)
T KOG0268|consen  134 WKIDG-PPLHTIL--GKSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWG-------------ADSISSVK  194 (433)
T ss_pred             eeccC-Ccceeee--ccccccccccccccc-cccccCc--eeeecccccCCccceeecC-------------CCceeEEe
Confidence            99865 4666665  456777887777666 7898885  5999999999999999877             57899999


Q ss_pred             ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194          210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH  289 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
                      |+|.     ....|+++..|+.|.+||+++.....                                    +.+..    
T Consensus       195 fNpv-----ETsILas~~sDrsIvLyD~R~~~Pl~------------------------------------KVi~~----  229 (433)
T KOG0268|consen  195 FNPV-----ETSILASCASDRSIVLYDLRQASPLK------------------------------------KVILT----  229 (433)
T ss_pred             cCCC-----cchheeeeccCCceEEEecccCCccc------------------------------------eeeee----
Confidence            9996     67788888899999999999753221                                    11122    


Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeE
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV  369 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v  369 (375)
                       ..-+.++|+   |.+--+++|++|..++.||++...        ..+....+|...|.+++|+| .|+-+++||.|.+|
T Consensus       230 -mRTN~Iswn---PeafnF~~a~ED~nlY~~DmR~l~--------~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksI  296 (433)
T KOG0268|consen  230 -MRTNTICWN---PEAFNFVAANEDHNLYTYDMRNLS--------RPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSI  296 (433)
T ss_pred             -ccccceecC---ccccceeeccccccceehhhhhhc--------ccchhhcccceeEEEeccCC-CcchhccccccceE
Confidence             234678999   888889999999999999999876        77889999999999999999 89999999999999


Q ss_pred             EEEec
Q 017194          370 KVYSI  374 (375)
Q Consensus       370 ~iw~~  374 (375)
                      +||.+
T Consensus       297 RIf~~  301 (433)
T KOG0268|consen  297 RIFPV  301 (433)
T ss_pred             EEeec
Confidence            99976

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.96  E-value=2.4e-27  Score=185.37  Aligned_cols=303  Identities=16%  Similarity=0.184  Sum_probs=211.2

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce---------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ..+|.++.|.++..+.+|||+.|..|+||.++.++.         ...+..|...|+++.|+|+|+.|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            468999999998555999999999999999875443         44567799999999999999999999999999999


Q ss_pred             ECC--------C-----CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEE
Q 017194           86 DVH--------M-----PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV  152 (375)
Q Consensus        86 d~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  152 (375)
                      -..        +     .+.+...+.+.+|...|..++|+|+++++++++.|..+++||+..++....+. .|...+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccccccee
Confidence            876        2     22244455667789999999999999999999999999999999999999999 999999999


Q ss_pred             EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC-CC-----CCCCCCCcccCC----CceeEEeecCCccccCCCCE
Q 017194          153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG-LP-----ENNGNAGQCYNP----AFVHAIAIPDADMLDKTNKI  222 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~  222 (375)
                      +|.|.++ ++++-+.|...+.+++...+.++..... .+     +........+|.    .....++|+|      +|.+
T Consensus       172 awDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP------dG~l  244 (434)
T KOG1009|consen  172 AWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP------DGSL  244 (434)
T ss_pred             ecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC------CCcE
Confidence            9999998 6999999988888887765554443311 00     000011111121    1233444544      5555


Q ss_pred             EEEEec----CCcE-----EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194          223 CVVAKG----DGVV-----DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  293 (375)
Q Consensus       223 l~~~~~----dg~i-----~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  293 (375)
                      |++...    .+.+     ++|+-..                                       ..++...+.....+.
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~---------------------------------------l~rP~~~lp~~~k~~  285 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKD---------------------------------------LKRPAARLPSPKKPA  285 (434)
T ss_pred             EEcccceeeeCCceeeceeEeecccc---------------------------------------ccCceeecCCCCcce
Confidence            555431    1111     1111111                                       111222333333344


Q ss_pred             EEEEEeec---------------CCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC
Q 017194          294 SCVAFSMF---------------GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  358 (375)
Q Consensus       294 ~~~~~s~~---------------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  358 (375)
                      ..+.|+|.               -|-+..+|.++. +.|++||.++..        ++...-.-|-..|++++|++ ||.
T Consensus       286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~--------P~~~v~nihy~~iTDiaws~-dg~  355 (434)
T KOG1009|consen  286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE--------PLAVVDNIHYSAITDIAWSD-DGS  355 (434)
T ss_pred             EEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccccc--------ceEEEeeeeeeeecceeecC-CCc
Confidence            44444431               134445666665 579999999874        23333445889999999999 999


Q ss_pred             cEEEeeCCCeEEEEec
Q 017194          359 NLVVCDTSKVVKVYSI  374 (375)
Q Consensus       359 ~l~s~~~dg~v~iw~~  374 (375)
                      .|+..+.||..-+-.+
T Consensus       356 ~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  356 VLLVSSTDGFCSLVTF  371 (434)
T ss_pred             EEEEeccCCceEEEEE
Confidence            9999999997665433

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.2e-29  Score=211.86  Aligned_cols=254  Identities=17%  Similarity=0.308  Sum_probs=218.2

Q ss_pred             EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEE
Q 017194           30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI  109 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  109 (375)
                      ++.....+-.+++|+.+.      +..|...+.++..-..++.+++|+.|..+-+|.+..   ...+..+.+|..+|.++
T Consensus         6 ~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl   76 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---PNAITSLTGHESPIESL   76 (825)
T ss_pred             ccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccC---CchhheeeccCCcceee
Confidence            344444555677888653      345788888888877788999999999999999874   34455688999999999


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCC
Q 017194          110 VCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL  189 (375)
Q Consensus       110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  189 (375)
                      .|+++..+|++|+.+|+|++||++..+.++++. +|...+.++.|+|.+. ++++|+.|+.+++||.+...+.+.+.-  
T Consensus        77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s--  152 (825)
T KOG0267|consen   77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKS--  152 (825)
T ss_pred             ecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-EeccccccccceehhhhccCceeeecC--
Confidence            999999999999999999999999999999999 9999999999999998 689999999999999998888888873  


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeee
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM  269 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~  269 (375)
                                 |...+..+.|+|      +|++++.|+.|..+++||+..+                             
T Consensus       153 -----------~~~vv~~l~lsP------~Gr~v~~g~ed~tvki~d~~ag-----------------------------  186 (825)
T KOG0267|consen  153 -----------HTRVVDVLRLSP------DGRWVASGGEDNTVKIWDLTAG-----------------------------  186 (825)
T ss_pred             -----------CcceeEEEeecC------CCceeeccCCcceeeeeccccc-----------------------------
Confidence                       467899999999      8999999999999999999864                             


Q ss_pred             eeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceee
Q 017194          270 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW  349 (375)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  349 (375)
                                 ++..++..|...+..+.|+   |..-++++|+.|+++++||+++.         +.+.........|.+
T Consensus       187 -----------k~~~ef~~~e~~v~sle~h---p~e~Lla~Gs~d~tv~f~dletf---------e~I~s~~~~~~~v~~  243 (825)
T KOG0267|consen  187 -----------KLSKEFKSHEGKVQSLEFH---PLEVLLAPGSSDRTVRFWDLETF---------EVISSGKPETDGVRS  243 (825)
T ss_pred             -----------ccccccccccccccccccC---chhhhhccCCCCceeeeecccee---------EEeeccCCccCCcee
Confidence                       4556888999999999999   88889999999999999999987         555555556789999


Q ss_pred             eeecCCCCCcEEEeeCC
Q 017194          350 LCTTPTESENLVVCDTS  366 (375)
Q Consensus       350 ~~~~~~~~~~l~s~~~d  366 (375)
                      ..|.| +++.+++|..+
T Consensus       244 ~~fn~-~~~~~~~G~q~  259 (825)
T KOG0267|consen  244 LAFNP-DGKIVLSGEQI  259 (825)
T ss_pred             eeecC-CceeeecCchh
Confidence            99999 99888877544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4e-29  Score=208.75  Aligned_cols=207  Identities=18%  Similarity=0.303  Sum_probs=188.3

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      .+..|...|.|+..-.. ++.+++|+.|..+-||.+..-..+..+.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus        23 ~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            45568889999888555 78999999999999999988888888999999999999999999999999999999999995


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      .   +.+..+.+|...+.++.|+|-+.+.+.|+.|+.+++||++..-+...+. +|...|..+.|+|+|. .++++++|.
T Consensus       102 A---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr-~v~~g~ed~  176 (825)
T KOG0267|consen  102 A---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGR-WVASGGEDN  176 (825)
T ss_pred             h---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCc-eeeccCCcc
Confidence            4   5566788899999999999999999999999999999999888889999 8999999999999999 699999999


Q ss_pred             eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      .+++||+..|+....|+.             |...+.++.|+|      ..-+++.|+.|+++++||+++.+
T Consensus       177 tvki~d~~agk~~~ef~~-------------~e~~v~sle~hp------~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKS-------------HEGKVQSLEFHP------LEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             eeeeeccccccccccccc-------------ccccccccccCc------hhhhhccCCCCceeeeeccceeE
Confidence            999999999999998874             468899999999      68899999999999999999753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.96  E-value=7.4e-27  Score=177.91  Aligned_cols=314  Identities=13%  Similarity=0.136  Sum_probs=226.8

Q ss_pred             ecCCCceeEEEEecC----CCCEEEEeCCCCcEEEEecccCceeeEee-----ecCccEEEEEEeCC----CCeEEEEcC
Q 017194           12 RGHKATATCCIASRD----RPGFVASSGEDGCICWFDLRSKDVQLVTD-----VGNGPVTSLCFKSG----NEDIIYVSS   78 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~----~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~~v~~l~~~~~----~~~l~~~~~   78 (375)
                      ..|+.+|..++|++-    ..+.+|++|.+ .+.+|......-+..++     .|.+....++|+-+    ..++|+++.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            468899999999842    24678888875 68899876544333332     36778888999753    457899999


Q ss_pred             CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEec--CcccceeEEEEe
Q 017194           79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFI  155 (375)
Q Consensus        79 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~  155 (375)
                      -|.|+|.|+.++   +....+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..|-.  +|...|.++.|+
T Consensus       114 ~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  114 LGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             eeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            999999999864   4556677889999999999964 7899999999999999999999888752  799999999999


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCC---CC----------C--CCCCCcccCCCceeEEeecCCccccCCC
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL---PE----------N--NGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~----------~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      ++|. ++++++.|.++++|++...+....++...   ++          .  ..-.....|...|-++.|        -|
T Consensus       191 ~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--------~g  261 (385)
T KOG1034|consen  191 LDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--------FG  261 (385)
T ss_pred             CCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--------Hh
Confidence            9999 79999999999999998543222222110   00          0  000122335555666666        37


Q ss_pred             CEEEEEecCCcEEEEeCCCc-ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194          221 KICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  299 (375)
Q Consensus       221 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  299 (375)
                      .++++-+-++.|..|..... +.......+                           ......+.++.-....|+-+.|+
T Consensus       262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~---------------------------es~~Ti~~~~~~~~c~iWfirf~  314 (385)
T KOG1034|consen  262 DFILSKSCENAIVCWKPGKLEESIHNVKPP---------------------------ESATTILGEFDYPMCDIWFIRFA  314 (385)
T ss_pred             hheeecccCceEEEEecchhhhhhhccCCC---------------------------ccceeeeeEeccCccceEEEEEe
Confidence            89999999999999988421 111111000                           01113344555666778888775


Q ss_pred             ecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                       ++|-++.||.|...|.|++||++....       ....++.  .-...|...+|+. |+..|+...+|+.|.-||.
T Consensus       315 -~d~~~~~la~gnq~g~v~vwdL~~~ep-------~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  315 -FDPWQKMLALGNQSGKVYVWDLDNNEP-------PKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             -ecHHHHHHhhccCCCcEEEEECCCCCC-------ccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence             447789999999999999999998742       1111111  1235688889998 9999999999999999984

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.1e-27  Score=184.47  Aligned_cols=285  Identities=14%  Similarity=0.197  Sum_probs=208.2

Q ss_pred             EEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeec----CccEEEEEEeC-------CCCeEEEEcCCCeEEEE
Q 017194           20 CCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVG----NGPVTSLCFKS-------GNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~----~~~v~~l~~~~-------~~~~l~~~~~d~~i~iw   85 (375)
                      .+..-|. .++++++-.+   ..+.+|=.+..+.- -+-.|    .....|++|..       .|+++|.|+.+..|.||
T Consensus       130 e~~V~ps-DnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  130 EEQVKPS-DNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             cceeccC-CcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            3455665 4566665432   34555544433321 12223    23345667642       36799999999999999


Q ss_pred             ECCCCCccccc------------------ccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcc
Q 017194           86 DVHMPASWRPL------------------ESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHS  146 (375)
Q Consensus        86 d~~~~~~~~~~------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (375)
                      |+.-.....+.                  ....+|+..|..+.|+.. .+.||+|+.|.+|.+||+.++++...+. .|.
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~  286 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHG  286 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcC
Confidence            98632111111                  112368888889999875 4579999999999999999999999999 899


Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  225 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  225 (375)
                      ..|.++.|+|..+.+|++|+.|++|.+.|.|. ...-..+++              .+.|-.++|.|.     ....+++
T Consensus       287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--------------~g~VEkv~w~~~-----se~~f~~  347 (463)
T KOG0270|consen  287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--------------DGEVEKVAWDPH-----SENSFFV  347 (463)
T ss_pred             CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--------------ccceEEEEecCC-----CceeEEE
Confidence            99999999999888999999999999999994 233334443              378999999986     6778889


Q ss_pred             EecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194          226 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  305 (375)
Q Consensus       226 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  305 (375)
                      +..||.++-+|+|...                                       +++.++.+|..+|.++.+++.  .-
T Consensus       348 ~tddG~v~~~D~R~~~---------------------------------------~~vwt~~AHd~~ISgl~~n~~--~p  386 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPG---------------------------------------KPVWTLKAHDDEISGLSVNIQ--TP  386 (463)
T ss_pred             ecCCceEEeeecCCCC---------------------------------------CceeEEEeccCCcceEEecCC--CC
Confidence            9999999999999741                                       567799999999999999853  33


Q ss_pred             cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          306 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       306 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .++++++.|+.|++|++.....       ..+....-.-+...|.++.|...-.|+.|+..+.++|||+
T Consensus       387 ~~l~t~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  387 GLLSTASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             cceeeccccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            5899999999999999987532       1111111122346677777755567888888889999996

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.8e-26  Score=171.59  Aligned_cols=276  Identities=14%  Similarity=0.184  Sum_probs=200.7

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC----ceeeEeeecCccEEEEEEeC--CCCeEEEEcCCCeEEEE
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~i~iw   85 (375)
                      .+|.+-|.|+.|.+. |+.+|+|+.|++|+|||.++.    .+....+.|.+.|..+.|.+  -|+.+|+++.|+++.||
T Consensus        10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            479999999999999 999999999999999996543    34566788999999999964  48899999999999999


Q ss_pred             ECCC------CCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceeeeeE------e------cCc
Q 017194           86 DVHM------PASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSL------R------AGH  145 (375)
Q Consensus        86 d~~~------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~------~------~~~  145 (375)
                      .-..      ++.+.....+......|+++.|.|.  |-.+|+++.||.++||+.-..-.+...      +      ..+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            8521      2334455556666789999999994  678999999999999987543222211      1      035


Q ss_pred             ccceeEEEEeeCC--CcEEEEeecC-----CeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194          146 SSICSSVQFIPWK--PWEVISGGLD-----SKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML  216 (375)
Q Consensus       146 ~~~v~~~~~~~~~--~~~l~~~~~d-----~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (375)
                      ..+..|+.|+|..  +.+|+.|+.+     +.++||....+.  ..+.-++.           -++.+|+.|+|.|..  
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-----------d~~dpI~di~wAPn~--  235 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-----------DHTDPIRDISWAPNI--  235 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-----------CCCCcceeeeecccc--
Confidence            5677899999753  1267777765     478888876543  11111111           167899999999941  


Q ss_pred             cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194          217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV  296 (375)
Q Consensus       217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  296 (375)
                      .....+||+++.|| |+||.++............         .|+.           -.....+.+..+.+|++.|..+
T Consensus       236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~---------~~~~-----------~~~l~v~~vs~~~~H~~~VWrv  294 (361)
T KOG2445|consen  236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL---------APDL-----------MTDLPVEKVSELDDHNGEVWRV  294 (361)
T ss_pred             CCceeeEEEeecCc-EEEEEEeeccchhhhhccc---------CCCC-----------ccccceEEeeeccCCCCceEEE
Confidence            11346899999999 9999998643222111100         0000           0023456677899999999999


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      .|.   -.|..|++.|.||.|++|...-.
T Consensus       295 ~wN---mtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  295 RWN---MTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EEe---eeeeEEeecCCCceeeehhhhhh
Confidence            999   89999999999999999986644

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=8.2e-26  Score=187.53  Aligned_cols=276  Identities=13%  Similarity=0.121  Sum_probs=194.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEE-EEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCe
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKE   81 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~   81 (375)
                      +++.++.+.+|.. +.+++|+|+ ++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.
T Consensus        20 t~~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~   96 (300)
T TIGR03866        20 TLEVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNL   96 (300)
T ss_pred             CCceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCe
Confidence            4556677776644 678999999 6655 6778899999999999888777765443 5678999999977655 45799


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC-cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      +++||+++.+....+.   . ...+.+++|+|++++++++..++ .+.+||.++++....+.  ....+..++|+|++..
T Consensus        97 l~~~d~~~~~~~~~~~---~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~  170 (300)
T TIGR03866        97 VTVIDIETRKVLAEIP---V-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKE  170 (300)
T ss_pred             EEEEECCCCeEEeEee---C-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCE
Confidence            9999998754333222   1 23467899999999999888765 46788998887766554  2345678999999984


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCC
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIES  239 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  239 (375)
                      +++++..++.|++||+++++.+..+....+....      .......++++|      +++.++++ ..++.+.+||+.+
T Consensus       171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~s~------dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP------EAVQPVGIKLTK------DGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             EEEEcCCCCEEEEEEcCcceeeeeeeeccccccc------ccCCccceEECC------CCCEEEEEcCCCCeEEEEECCC
Confidence            4455567999999999998877766533110000      011234678888      78876554 4567899999986


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe-cCCCeEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVK  318 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~-~~dg~i~  318 (375)
                      .+..                                        ..+ .+...+.+++|+   |+|++|+++ +.+|.|+
T Consensus       239 ~~~~----------------------------------------~~~-~~~~~~~~~~~~---~~g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       239 YEVL----------------------------------------DYL-LVGQRVWQLAFT---PDEKYLLTTNGVSNDVS  274 (300)
T ss_pred             CcEE----------------------------------------EEE-EeCCCcceEEEC---CCCCEEEEEcCCCCeEE
Confidence            4211                                        111 123468899999   999998876 5689999


Q ss_pred             EEeCCCceeeeecchhhhhhhhcccccceeeeeecC
Q 017194          319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  354 (375)
                      +||+.++         +.+..+.. ....+.++++|
T Consensus       275 v~d~~~~---------~~~~~~~~-~~~~~~~~~~~  300 (300)
T TIGR03866       275 VIDVAAL---------KVIKSIKV-GRLPWGVVVRP  300 (300)
T ss_pred             EEECCCC---------cEEEEEEc-ccccceeEeCC
Confidence            9999998         43333332 34557776654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.9e-28  Score=214.91  Aligned_cols=288  Identities=16%  Similarity=0.167  Sum_probs=226.5

Q ss_pred             EEEEecCCCCEEEEe----------CCCCcEEEEecccC--c----eeeEeeecCccEEEEEEeCCCCe----EEEEcCC
Q 017194           20 CCIASRDRPGFVASS----------GEDGCICWFDLRSK--D----VQLVTDVGNGPVTSLCFKSGNED----IIYVSSG   79 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~----------~~d~~i~iw~~~~~--~----~~~~~~~~~~~v~~l~~~~~~~~----l~~~~~d   79 (375)
                      .++|+|....++|+|          +.+.++-||.+.-.  +    .+..+. .....+.|+|.+.+..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            368999843356655          33556667765422  2    223333 2567899999987766    7788889


Q ss_pred             CeEEEEECCC---CCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEe-cCcccceeEEEE
Q 017194           80 KEVKSFDVHM---PASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQF  154 (375)
Q Consensus        80 ~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~  154 (375)
                      |.|.+||...   +.....+..+..|.+.|..+.|++.. ++||+|+.||.|.|||+...+.-..+. ....+.|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            9999999875   45566777888899999999999965 599999999999999998755444431 124678999999


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---c
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---V  231 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~  231 (375)
                      +..-..+|++++.+|++.|||++..+++..+....           ....+..++|+|.     +...+++++.|.   .
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-----------~~~~~S~l~WhP~-----~aTql~~As~dd~~Pv  233 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-----------GRMHCSVLAWHPD-----HATQLLVASGDDSAPV  233 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCC-----------CccceeeeeeCCC-----CceeeeeecCCCCCce
Confidence            98877689999999999999999988777766431           1135789999995     556677777654   6


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG  311 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~  311 (375)
                      |.+||++...                                       ..++.+.+|...|.++.|++  .|..+|+++
T Consensus       234 iqlWDlR~as---------------------------------------sP~k~~~~H~~GilslsWc~--~D~~lllSs  272 (1049)
T KOG0307|consen  234 IQLWDLRFAS---------------------------------------SPLKILEGHQRGILSLSWCP--QDPRLLLSS  272 (1049)
T ss_pred             eEeecccccC---------------------------------------CchhhhcccccceeeeccCC--CCchhhhcc
Confidence            9999998532                                       34457789999999999995  455899999


Q ss_pred             cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +.|+.|.+|+.+++         +++..+......+..+.|.|.+...++.++.||.|.|+.+
T Consensus       273 gkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  273 GKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             cCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence            99999999999998         7777888888899999999988889999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=3.5e-27  Score=194.93  Aligned_cols=167  Identities=18%  Similarity=0.162  Sum_probs=129.5

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee------eEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ------LVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~------~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      .+..|.+|.+.|+.+.|+|-...+||+|+.|..|+||.+..+-..      ..+.+.+-.|.++.|+|...-|++.+..|
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            455788999999999999987789999999999999999854321      22233456788999999887788888899


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-ceeeeeEecCcccc-eeEEEEeeCC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSI-CSSVQFIPWK  158 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~-v~~~~~~~~~  158 (375)
                      .+++||+.++   +.+..+.+|...|.+..|+.||.++++++.|..|+|||.+. ++.++... +|.+. =..+.|..+-
T Consensus       151 ~v~i~D~stq---k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te-~H~~~rdsRv~w~Gn~  226 (1012)
T KOG1445|consen  151 SVYITDISTQ---KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTE-GHGGMRDSRVLWAGNW  226 (1012)
T ss_pred             eEEEEEcccC---ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccc-ccccchhheeeeccch
Confidence            9999999975   45556677899999999999999999999999999999984 56677776 77653 2245565554


Q ss_pred             CcEEEEeec----CCeEEEeeCCC
Q 017194          159 PWEVISGGL----DSKLVMWDFSK  178 (375)
Q Consensus       159 ~~~l~~~~~----d~~i~~wd~~~  178 (375)
                      . .|++.+.    -..|++||.+.
T Consensus       227 ~-rlisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  227 E-RLISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             h-hhhhcccchhhheeeeeeeccc
Confidence            4 3444443    34678888753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=2.3e-27  Score=183.78  Aligned_cols=258  Identities=15%  Similarity=0.171  Sum_probs=193.0

Q ss_pred             ecCccEEEEEEeCCCC--eEEEEcCCCeEEEEECCC-------------CCcccccccccCCCcceeEEEEcCC-CCeEE
Q 017194           56 VGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHM-------------PASWRPLESYNYNKEEINQIVCNPK-SSFLA  119 (375)
Q Consensus        56 ~~~~~v~~l~~~~~~~--~l~~~~~d~~i~iwd~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~  119 (375)
                      .|.+.++.+.-.+-++  +.++-+..|.|+||++..             ....+++.++.+|...=..++|||- ...|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            4667777777766543  455556679999999863             1234566677788888899999993 23588


Q ss_pred             EEeCCCcEEEEeCcCcee---eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe-cCCCCCCCC
Q 017194          120 CADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGN  195 (375)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~  195 (375)
                      +|.--+.|++|...++.-   ...|. +|+..|..++|+|..+.+|++|+.||+|+|||+|.+.....+. ..       
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA-------  300 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA-------  300 (440)
T ss_pred             cCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec-------
Confidence            888788999999887632   33456 8999999999999988899999999999999999883322221 22       


Q ss_pred             CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194          196 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  275 (375)
Q Consensus       196 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~  275 (375)
                           |...|+.|.|+.      +..+|++|+.||.++|||++..+                                  
T Consensus       301 -----h~sDVNVISWnr------~~~lLasG~DdGt~~iwDLR~~~----------------------------------  335 (440)
T KOG0302|consen  301 -----HNSDVNVISWNR------REPLLASGGDDGTLSIWDLRQFK----------------------------------  335 (440)
T ss_pred             -----cCCceeeEEccC------CcceeeecCCCceEEEEEhhhcc----------------------------------
Confidence                 578999999998      56699999999999999999732                                  


Q ss_pred             CcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee----cchh---hhhhhhccc--ccc
Q 017194          276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT----SINN---DLLIKNINL--NKK  346 (375)
Q Consensus       276 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~---~~~~~~~~~--~~~  346 (375)
                         ..+++..++-|..+|+++.|+|  .+...|++++.|.+|.+||+..-.....    ....   -+.+.+.-|  ...
T Consensus       336 ---~~~pVA~fk~Hk~pItsieW~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke  410 (440)
T KOG0302|consen  336 ---SGQPVATFKYHKAPITSIEWHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE  410 (440)
T ss_pred             ---CCCcceeEEeccCCeeEEEecc--ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH
Confidence               1256678999999999999996  5667899999999999999976433100    0000   011122334  346


Q ss_pred             eeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          347 VNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       347 v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      +..+.|++....+|++.+.|| +.||
T Consensus       411 ~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  411 VKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             hhhheeccCCCCeEEEecccc-eeEE
Confidence            788999987778999999998 4444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=178.60  Aligned_cols=265  Identities=16%  Similarity=0.197  Sum_probs=193.8

Q ss_pred             ecCCCceeEEEEecCC-CCEEEEeCCCCcEEEEeccc----------------CceeeEeeecCccEEEEEEeCCCC-eE
Q 017194           12 RGHKATATCCIASRDR-PGFVASSGEDGCICWFDLRS----------------KDVQLVTDVGNGPVTSLCFKSGNE-DI   73 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~iw~~~~----------------~~~~~~~~~~~~~v~~l~~~~~~~-~l   73 (375)
                      -.|.+.|+.+...+-+ ..+.|+=+..|.|.||++..                .+++.++.+|...=+.|+|||-.. .|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577888888877762 34566668889999999752                234778888999999999999322 47


Q ss_pred             EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCcee--eeeEecCccccee
Q 017194           74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICS  150 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~  150 (375)
                      ++|..-+.|++|...++.-..-...+.+|+..|-.++|+|. ...|++|+-||+|+|||++.+..  ....+ .|.+.|+
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-Ah~sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-AHNSDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee-ccCCcee
Confidence            88888899999999886433334456679999999999995 45789999999999999997722  22235 8999999


Q ss_pred             EEEEeeCCCcEEEEeecCCeEEEeeCCC---CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          151 SVQFIPWKPWEVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      .|.|+..-+ +|++|+.||+++|||+++   ++++..++.             |..+|++|.|+|.     +...+++++
T Consensus       307 VISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-------------Hk~pItsieW~p~-----e~s~iaasg  367 (440)
T KOG0302|consen  307 VISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKY-------------HKAPITSIEWHPH-----EDSVIAASG  367 (440)
T ss_pred             eEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEe-------------ccCCeeEEEeccc-----cCceEEecc
Confidence            999999988 899999999999999986   456677775             5799999999996     778899999


Q ss_pred             cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194          228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                      .|.+|.+||+....-..........          +  |         ..-..++++.-.+ ...+..+.|++.  -..+
T Consensus       368 ~D~QitiWDlsvE~D~ee~~~~a~~----------~--L---------~dlPpQLLFVHqG-Qke~KevhWH~Q--iPG~  423 (440)
T KOG0302|consen  368 EDNQITIWDLSVEADEEEIDQEAAE----------G--L---------QDLPPQLLFVHQG-QKEVKEVHWHRQ--IPGL  423 (440)
T ss_pred             CCCcEEEEEeeccCChhhhcccccc----------c--h---------hcCCceeEEEecc-hhHhhhheeccC--CCCe
Confidence            9999999999853321111100000          0  0         0111123333223 456778889852  3348


Q ss_pred             EEEecCCCeEEEEe
Q 017194          308 LISGGNDKLVKVWD  321 (375)
Q Consensus       308 l~s~~~dg~i~iwd  321 (375)
                      |++.+.|| +.||.
T Consensus       424 lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  424 LVSTAIDG-FNVFK  436 (440)
T ss_pred             EEEecccc-eeEEE
Confidence            88888888 55553

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=2.8e-26  Score=172.42  Aligned_cols=226  Identities=17%  Similarity=0.242  Sum_probs=181.7

Q ss_pred             eecCccEEEEEEeC-CCCeEEEEcCCCeEEEEECCCCCcc------------cccccccCCCcceeEEEEcC-CCCeEEE
Q 017194           55 DVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASW------------RPLESYNYNKEEINQIVCNP-KSSFLAC  120 (375)
Q Consensus        55 ~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~~v~~~~~~~-~~~~l~~  120 (375)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||++.....            .......+|...|.++.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999976 6899999999999999999864311            11223346888999999999 5668888


Q ss_pred             EeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCc
Q 017194          121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ  198 (375)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  198 (375)
                      ++-|.++++||..+.+....|+  ..+.|.+-+++|-..  .++++|..+-+|++.|+.+|.....+. +          
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-G----------  186 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-G----------  186 (397)
T ss_pred             ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-c----------
Confidence            9999999999999999888887  678888888888542  378889999999999999999999887 4          


Q ss_pred             ccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcc
Q 017194          199 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK  278 (375)
Q Consensus       199 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~  278 (375)
                        |...|.++.|+|.     ..-.|++|+.||.|++||++...--+                         ...+..+..
T Consensus       187 --Hr~~vlaV~Wsp~-----~e~vLatgsaDg~irlWDiRrasgcf-------------------------~~lD~hn~k  234 (397)
T KOG4283|consen  187 --HRDGVLAVEWSPS-----SEWVLATGSADGAIRLWDIRRASGCF-------------------------RVLDQHNTK  234 (397)
T ss_pred             --ccCceEEEEeccC-----ceeEEEecCCCceEEEEEeeccccee-------------------------EEeecccCc
Confidence              5789999999995     56678999999999999999631111                         112222233


Q ss_pred             eeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee
Q 017194          279 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  328 (375)
Q Consensus       279 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  328 (375)
                      ..+.+..-..|.+.++.++|+   .++.++++++.|..+++|+..++...
T Consensus       235 ~~p~~~~n~ah~gkvngla~t---Sd~~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  235 RPPILKTNTAHYGKVNGLAWT---SDARYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             cCccccccccccceeeeeeec---ccchhhhhccCccceEEeecccCccc
Confidence            334445567899999999999   99999999999999999999988643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.1e-26  Score=191.76  Aligned_cols=249  Identities=13%  Similarity=0.142  Sum_probs=209.5

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC---CCCeEEEEcCCCeEEEEECCCC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      -.-.+.+++.+|+ +++||+|..-|+++||++.+.+....+++|...|.|+.|+.   ..++|++++.|.-|.|+|+.. 
T Consensus       458 ~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-  535 (1080)
T KOG1408|consen  458 SRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-  535 (1080)
T ss_pred             cccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence            4567999999999 99999999999999999999999999999999999999984   346899999999999999874 


Q ss_pred             CcccccccccCCCcceeEEEEcCCC--CeEEEEeCCCcEEEEeCcCceeeeeEecC----cccceeEEEEeeCCCcEEEE
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAG----HSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~  164 (375)
                       ....++++.+|...|+++.|..+|  ..+++++.|..|.+--.....-...+...    ....+..|+..|..+ ++++
T Consensus       536 -ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t  613 (1080)
T KOG1408|consen  536 -NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVT  613 (1080)
T ss_pred             -ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEE
Confidence             467888899999999999998876  67888889987754332211111222201    134788999999998 7999


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ++.|..|+|||+.+++..+.++-..          -+.+..-.+...|      .|.++++.+.|.++.++|..++    
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~----------~~eG~lIKv~lDP------SgiY~atScsdktl~~~Df~sg----  673 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSR----------DHEGDLIKVILDP------SGIYLATSCSDKTLCFVDFVSG----  673 (1080)
T ss_pred             EecccceEEEeccccceeeeecccc----------cCCCceEEEEECC------CccEEEEeecCCceEEEEeccc----
Confidence            9999999999999999999998431          1345666777877      7999999999999999999986    


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                                          +++.++.+|...|+.+.|.   +|-+.|++.+.||.|.||.+..
T Consensus       674 ------------------------------------EcvA~m~GHsE~VTG~kF~---nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  674 ------------------------------------ECVAQMTGHSEAVTGVKFL---NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ------------------------------------hhhhhhcCcchheeeeeec---ccchhheeecCCceEEEEECch
Confidence                                                6677899999999999999   9999999999999999999986


Q ss_pred             c
Q 017194          325 F  325 (375)
Q Consensus       325 ~  325 (375)
                      .
T Consensus       715 ~  715 (1080)
T KOG1408|consen  715 T  715 (1080)
T ss_pred             h
Confidence            4

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=4.5e-26  Score=182.97  Aligned_cols=266  Identities=17%  Similarity=0.167  Sum_probs=210.0

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      .+.++.|+..+.-.+++.+.|..+++|.-...  +....-......-.|++......++++|+..+.|+|||++.   ..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~---kl  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA---KL  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH---HH
Confidence            38889998873233445567888999975432  11111111122334444444558999999999999999983   34


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      ..+.+++|...|+++.++....+||+++..|.|.|..+.++.....|..+....|+-+.|+|..+.+|.+++.+|.|.+|
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            45567788999999999999999999999999999999998888888723345677899999998788999999999999


Q ss_pred             eCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCC
Q 017194          175 DFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK  254 (375)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  254 (375)
                      |+....++..+.-.            |..+...|+|+|.     +..+|++.+.|..|.+||.+..+.            
T Consensus       193 Dv~g~sp~~~~~~~------------HsAP~~gicfsps-----ne~l~vsVG~Dkki~~yD~~s~~s------------  243 (673)
T KOG4378|consen  193 DVQGMSPIFHASEA------------HSAPCRGICFSPS-----NEALLVSVGYDKKINIYDIRSQAS------------  243 (673)
T ss_pred             eccCCCcccchhhh------------ccCCcCcceecCC-----ccceEEEecccceEEEeecccccc------------
Confidence            99988887777655            7788999999997     888999999999999999996311            


Q ss_pred             CceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchh
Q 017194          255 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN  334 (375)
Q Consensus       255 ~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  334 (375)
                                                  ...+. -..+...++|+   ++|.+|++|...|.|..||++..+        
T Consensus       244 ----------------------------~~~l~-y~~Plstvaf~---~~G~~L~aG~s~G~~i~YD~R~~k--------  283 (673)
T KOG4378|consen  244 ----------------------------TDRLT-YSHPLSTVAFS---ECGTYLCAGNSKGELIAYDMRSTK--------  283 (673)
T ss_pred             ----------------------------cceee-ecCCcceeeec---CCceEEEeecCCceEEEEecccCC--------
Confidence                                        11121 24678999999   999999999999999999999876        


Q ss_pred             hhhhhhcccccceeeeeecC
Q 017194          335 DLLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       335 ~~~~~~~~~~~~v~~~~~~~  354 (375)
                      .++.....|...|++++|-|
T Consensus       284 ~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  284 APVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             CCceEeeecccceeEEEeee
Confidence            66788889999999999988

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.2e-26  Score=174.21  Aligned_cols=289  Identities=13%  Similarity=0.112  Sum_probs=202.4

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC--CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI  106 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  106 (375)
                      ..+|++-.+|.|++||..+++.+..++++...++.++|..  ....+.+++.||+|++||++.......+..-.....+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688888999999999999999999999999999999976  45678999999999999999765544333222223577


Q ss_pred             eEEEEcCCCCeEEEEe----CCCcEEEEeCcCcee-eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-
Q 017194          107 NQIVCNPKSSFLACAD----DGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-  180 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-  180 (375)
                      .+++....++.+++|.    .+-.|.+||++..+. +..+...|...|++++|+|..+.+|++|+.||-|.+||+.... 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7888877888888886    366799999997765 7777668999999999999999899999999999999997542 


Q ss_pred             ---cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce
Q 017194          181 ---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  257 (375)
Q Consensus       181 ---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  257 (375)
                         .+..+.              +...|..+.|...     ..+.+.+-+......+|+++.+........+....    
T Consensus       201 eDaL~~viN--------------~~sSI~~igw~~~-----~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~----  257 (376)
T KOG1188|consen  201 EDALLHVIN--------------HGSSIHLIGWLSK-----KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA----  257 (376)
T ss_pred             hhhHHHhhc--------------ccceeeeeeeecC-----CcceEEEEEccCceeEEEccCCChhhcccCccchh----
Confidence               233333              3467999999862     33578888999999999999765332222110000    


Q ss_pred             eecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCC---ceeeeecch
Q 017194          258 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSR---FQGVQTSIN  333 (375)
Q Consensus       258 ~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~  333 (375)
                                             ....+...-..-|...  +|  .+...++.++. -|...++-+..   +...     
T Consensus       258 -----------------------~d~r~~~~~dY~I~~~--~~--~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~-----  305 (376)
T KOG1188|consen  258 -----------------------DDLRKEDNCDYVINEH--SP--GDKDTCALAGTDSNKGTIFPLVDTSSGSLL-----  305 (376)
T ss_pred             -----------------------hhHHhhhhhhheeecc--cC--CCcceEEEeccccCceeEEEeeeccccccc-----
Confidence                                   0000000001112221  11  34445554444 45555554442   2111     


Q ss_pred             hhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          334 NDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       334 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                       ..+..+.+ |..-|.++.|.. .+..+.||++||.+.+|..
T Consensus       306 -~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  306 -TEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             -CccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence             22233444 777788888876 7789999999999999974

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.95  E-value=8e-25  Score=164.13  Aligned_cols=280  Identities=18%  Similarity=0.189  Sum_probs=207.5

Q ss_pred             CCCcEEEEecccCce---eeEeeecCccEEEEEEeCCCCeEEEEcCC--------CeEEEEECCCCCc------cccccc
Q 017194           36 EDGCICWFDLRSKDV---QLVTDVGNGPVTSLCFKSGNEDIIYVSSG--------KEVKSFDVHMPAS------WRPLES   98 (375)
Q Consensus        36 ~d~~i~iw~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~------~~~~~~   98 (375)
                      .|+.|.+.+++.+..   -+.+..|.+.|..++-+|-.+.+++....        ..+.||.+.....      ++.+..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            367788888765442   34566688999999999976655543322        2678999865322      223333


Q ss_pred             cc-CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEe----cCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           99 YN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLR----AGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        99 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      +. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.    .+++...++-+|+|..+..-+....|+++.
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~  196 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ  196 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEE
Confidence            32 3446899999999999998875 78899999987654 33332    145567788899994332345556689999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      .||+++.+....++-.            |...+..+.|+|.     ...+|++++.||.|++||.+..+           
T Consensus       197 ~~D~RT~~~~~sI~dA------------Hgq~vrdlDfNpn-----kq~~lvt~gDdgyvriWD~R~tk-----------  248 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDA------------HGQRVRDLDFNPN-----KQHILVTCGDDGYVRIWDTRKTK-----------  248 (370)
T ss_pred             EEEccchhhhcchhhh------------hcceeeeccCCCC-----ceEEEEEcCCCccEEEEeccCCC-----------
Confidence            9999999888888755            6678999999994     45678899999999999999642           


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee---
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---  329 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---  329 (375)
                                                  ..+.++.+|...|+++.|.|  ...++|++|+.|..|.+|...+-...+   
T Consensus       249 ----------------------------~pv~el~~HsHWvW~VRfn~--~hdqLiLs~~SDs~V~Lsca~svSSE~qi~  298 (370)
T KOG1007|consen  249 ----------------------------FPVQELPGHSHWVWAVRFNP--EHDQLILSGGSDSAVNLSCASSVSSEQQIE  298 (370)
T ss_pred             ----------------------------ccccccCCCceEEEEEEecC--ccceEEEecCCCceeEEEeccccccccccc
Confidence                                        44568899999999999996  346799999999999999876543110   


Q ss_pred             -----------------ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          330 -----------------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       330 -----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                                       .......+..+..|...|.+++|+..|.-.+|+-+.||++.|=++
T Consensus       299 ~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  299 FEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence                             001112344677899999999999989999999999999987554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=165.38  Aligned_cols=277  Identities=17%  Similarity=0.255  Sum_probs=208.5

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCce------------eeEeee-cCccEEEEEEe-------CCCCeEEEEc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------------QLVTDV-GNGPVTSLCFK-------SGNEDIIYVS   77 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------------~~~~~~-~~~~v~~l~~~-------~~~~~l~~~~   77 (375)
                      ...+.|+|| |..|++-+.|..+.+|++.....            ...++. ....|...+|-       |+..++++.+
T Consensus        52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            456799999 89999999999999999752110            111111 24667787875       6778899999


Q ss_pred             CCCeEEEEECCCCCcccccccccCCCc---ceeEEEEcCCCCeEEEEeCCCcEEEEeC-cCceee---eeEe---cCccc
Q 017194           78 SGKEVKSFDVHMPASWRPLESYNYNKE---EINQIVCNPKSSFLACADDGGDVKIIDI-RQHCLY---KSLR---AGHSS  147 (375)
Q Consensus        78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~---~~~~---~~~~~  147 (375)
                      .+.-|++||.-+++.......+. |..   ...+++|+|||.+|++|. ..+|+++|+ +.|+..   .++.   .+..+
T Consensus       131 r~~PIh~wdaftG~lraSy~~yd-h~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYD-HQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             ccCceeeeeccccccccchhhhh-hHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            99999999999887655554443 233   345899999999999984 578999999 444321   1111   13467


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      .+.+++|+|.....++.++...++-||.-..+.++..+- +            |.+.|+.+.|.+      +|+.|++|.
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-g------------h~gGvThL~~~e------dGn~lfsGa  269 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-G------------HGGGVTHLQWCE------DGNKLFSGA  269 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-c------------cCCCeeeEEecc------CcCeecccc
Confidence            889999999887689999999999999888777777765 4            688999999999      799999987


Q ss_pred             c-CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc-cEEEEEEeecCCCC
Q 017194          228 G-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERG  305 (375)
Q Consensus       228 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~  305 (375)
                      . +..|..||++...                                       ..+..+..|.. .-..|.|. ..|++
T Consensus       270 Rk~dkIl~WDiR~~~---------------------------------------~pv~~L~rhv~~TNQRI~FD-ld~~~  309 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSR---------------------------------------DPVYALERHVGDTNQRILFD-LDPKG  309 (406)
T ss_pred             cCCCeEEEEeehhcc---------------------------------------chhhhhhhhccCccceEEEe-cCCCC
Confidence            4 7799999999632                                       34455666644 33444443 23899


Q ss_pred             cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194          306 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  365 (375)
Q Consensus       306 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  365 (375)
                      ++|++|+.||.|++||++..-        ..+..+..|+..++.++++| --.++++++.
T Consensus       310 ~~LasG~tdG~V~vwdlk~~g--------n~~sv~~~~sd~vNgvslnP-~mpilatssG  360 (406)
T KOG2919|consen  310 EILASGDTDGSVRVWDLKDLG--------NEVSVTGNYSDTVNGVSLNP-IMPILATSSG  360 (406)
T ss_pred             ceeeccCCCccEEEEecCCCC--------CcccccccccccccceecCc-ccceeeeccC
Confidence            999999999999999999842        44567778999999999999 5567777764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=4.5e-26  Score=183.25  Aligned_cols=237  Identities=15%  Similarity=0.190  Sum_probs=197.8

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      ...|+++...|| ++.|++|+.-.++.|||+......  ..+....-..++++.+||.+..++++.||.|.|||+.+.  
T Consensus       465 dnyiRSckL~pd-grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--  541 (705)
T ss_pred             ccceeeeEecCC-CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--
Confidence            467899999999 899999999999999999866543  233333456778999999999999999999999999853  


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                       ..+..+.+|...+.|+.+++||..|.+|+-|.+|+.||+++++.+....  ..+.|.++.++|.+.+ +++|-+++.+.
T Consensus       542 -~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dW-lavGMens~ve  617 (705)
T KOG0639|consen  542 -TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDW-LAVGMENSNVE  617 (705)
T ss_pred             -eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccc-eeeecccCcEE
Confidence             5677888999999999999999999999999999999999988877665  6789999999999995 99999999998


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      +-.....+.. .+..             |..-|.++.|.+      -|+++++.+.|+.+-.|...-+..++        
T Consensus       618 vlh~skp~ky-qlhl-------------heScVLSlKFa~------cGkwfvStGkDnlLnawrtPyGasiF--------  669 (705)
T KOG0639|consen  618 VLHTSKPEKY-QLHL-------------HESCVLSLKFAY------CGKWFVSTGKDNLLNAWRTPYGASIF--------  669 (705)
T ss_pred             EEecCCccce-eecc-------------cccEEEEEEecc------cCceeeecCchhhhhhccCcccccee--------
Confidence            8887644332 2221             578899999999      69999999999999999887653222        


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                      ..+ ....|.++.+|   .|.+|++||+.|....||.+
T Consensus       670 --------------------------------qsk-E~SsVlsCDIS---~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  670 --------------------------------QSK-ESSSVLSCDIS---FDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             --------------------------------ecc-ccCcceeeeec---cCceEEEecCCCcceEEEEE
Confidence                                            222 25689999999   89999999999998888865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-24  Score=185.99  Aligned_cols=248  Identities=14%  Similarity=0.175  Sum_probs=197.1

Q ss_pred             ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC-CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194           56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ  134 (375)
Q Consensus        56 ~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (375)
                      .|+...+.++|.|+|++|++++.||.|++|+.... .....+..   +...|.+++.  ++.+|++|+.+++|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence            58888999999999999999999999999997754 22233322   4667777765  455999999999999999988


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD  214 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (375)
                      ++.-..+. ...-++++++++.+|+ +++.|+.|-.|++-++.+......+. +            |..+|.++.++|  
T Consensus        86 ~~~~~iL~-Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lr-g------------h~apVl~l~~~p--  148 (933)
T KOG1274|consen   86 GEEDTILA-RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLR-G------------HDAPVLQLSYDP--  148 (933)
T ss_pred             CCccceee-eeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeec-c------------cCCceeeeeEcC--
Confidence            76654454 4567899999999999 79999999999999999888777776 3            578999999999  


Q ss_pred             cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-CccE
Q 017194          215 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAA  293 (375)
Q Consensus       215 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v  293 (375)
                          ++.+||+.+-||.|++||+.++.....+....                                 .....- ...+
T Consensus       149 ----~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~---------------------------------k~n~~~~s~i~  191 (933)
T KOG1274|consen  149 ----KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD---------------------------------KDNEFILSRIC  191 (933)
T ss_pred             ----CCCEEEEEecCceEEEEEcccchhhhhcccCC---------------------------------cccccccccee
Confidence                89999999999999999999764333222110                                 001111 4567


Q ss_pred             EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194          294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKV  371 (375)
Q Consensus       294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i  371 (375)
                      ..++|+   |+|..++....|+.|++|+......         ...+.  .+...+..+.|+| .|+|||+++.||.|.|
T Consensus       192 ~~~aW~---Pk~g~la~~~~d~~Vkvy~r~~we~---------~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~v  258 (933)
T KOG1274|consen  192 TRLAWH---PKGGTLAVPPVDNTVKVYSRKGWEL---------QFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILV  258 (933)
T ss_pred             eeeeec---CCCCeEEeeccCCeEEEEccCCcee---------heeecccccccceEEEEEcC-CCcEEeeeccCCcEEE
Confidence            889999   8988888888899999999999842         22222  2444499999999 8999999999999999


Q ss_pred             EecC
Q 017194          372 YSIS  375 (375)
Q Consensus       372 w~~~  375 (375)
                      ||++
T Consensus       259 Wnv~  262 (933)
T KOG1274|consen  259 WNVD  262 (933)
T ss_pred             Eecc
Confidence            9974

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.94  E-value=4.5e-25  Score=165.45  Aligned_cols=277  Identities=13%  Similarity=0.150  Sum_probs=203.4

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCC-------CcEEEEecccCc---------eeeEee-ecCccEEEEEEeCCCC
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGED-------GCICWFDLRSKD---------VQLVTD-VGNGPVTSLCFKSGNE   71 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d-------~~i~iw~~~~~~---------~~~~~~-~~~~~v~~l~~~~~~~   71 (375)
                      +.|..|.+.|+.++-+|.+.++|+|+..+       -.+.||.+....         ++..+. .+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            45677889999999999988888887552       247899986432         234443 3456899999999999


Q ss_pred             eEEEEcCCCeEEEEECCCCCcc-ccccc--ccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc
Q 017194           72 DIIYVSSGKEVKSFDVHMPASW-RPLES--YNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS  146 (375)
Q Consensus        72 ~l~~~~~d~~i~iwd~~~~~~~-~~~~~--~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (375)
                      .+++-. |..|.+|++..+... ..+..  -..+....++-+|+|  +++.+++. .|+++..||+++.+....+...|.
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence            988777 899999999876542 22211  122456788889999  77777776 679999999999888777776899


Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  225 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  225 (375)
                      ..|..+.|+|+...+|++|+.||.|++||.+..+ +++.+. +            |..++.++.|+|.     ..+++++
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~------------HsHWvW~VRfn~~-----hdqLiLs  276 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-G------------HSHWVWAVRFNPE-----HDQLILS  276 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-C------------CceEEEEEEecCc-----cceEEEe
Confidence            9999999999998899999999999999998754 444444 3            6789999999997     7889999


Q ss_pred             EecCCcEEEEeCCCcceeecccc---c----CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEE
Q 017194          226 AKGDGVVDVINIESELNISRSKS---T----TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF  298 (375)
Q Consensus       226 ~~~dg~i~i~d~~~~~~~~~~~~---~----~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  298 (375)
                      |+.|..|.+|....-........   .    ..........-+||                  .+.++..|...|++++|
T Consensus       277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg------------------~l~tydehEDSVY~~aW  338 (370)
T KOG1007|consen  277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG------------------QLETYDEHEDSVYALAW  338 (370)
T ss_pred             cCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc------------------ccccccccccceEEEee
Confidence            99999999998764221111100   0    00000111111222                  34478899999999999


Q ss_pred             eecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          299 SMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       299 s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      |.  .|-=++|+-+.||.+.|=.+...
T Consensus       339 Ss--adPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  339 SS--ADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             cc--CCCeeEEEeccCceEEeecCChh
Confidence            94  34456788899999998877653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.7e-25  Score=178.59  Aligned_cols=269  Identities=14%  Similarity=0.170  Sum_probs=205.4

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeeec--CccEEEEEEeCCCCeEEEE--cCCCeEEEEECCCCC-cccccccccCCCcc
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDIIYV--SSGKEVKSFDVHMPA-SWRPLESYNYNKEE  105 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~--~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~  105 (375)
                      +|+++.  .++|||....+..-.+..|  ...+.++.|..... |+++  +.|..+++|.-.... ....+....+  ..
T Consensus         7 ~aS~gd--~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~   81 (673)
T KOG4378|consen    7 VASTGD--KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DN   81 (673)
T ss_pred             eeccCC--ceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc--ch
Confidence            444443  6999999876654444433  33488999987654 5444  446788999754220 1122222222  24


Q ss_pred             eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194          106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  185 (375)
                      -.|++......++++|+..+.|+|||++...+.+.++ +|+..|+++.++-.+. +|++++..|.|.+..+.++.....+
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f  159 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTF  159 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccce
Confidence            4455555566899999999999999999777778888 9999999999998888 7999999999999999999888888


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccc
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR  265 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  265 (375)
                      ..+            ....+.-+.++|.     ...+|.+++.+|.|.+||.....                        
T Consensus       160 ~~~------------sgqsvRll~ys~s-----kr~lL~~asd~G~VtlwDv~g~s------------------------  198 (673)
T KOG4378|consen  160 TID------------SGQSVRLLRYSPS-----KRFLLSIASDKGAVTLWDVQGMS------------------------  198 (673)
T ss_pred             ecC------------CCCeEEEeecccc-----cceeeEeeccCCeEEEEeccCCC------------------------
Confidence            755            3456778999984     45677888999999999998632                        


Q ss_pred             eeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc
Q 017194          266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK  345 (375)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  345 (375)
                                     ....-...|..+...++|+|  .+..+|++.+.|..|.+||....          ..........
T Consensus       199 ---------------p~~~~~~~HsAP~~gicfsp--sne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~y~~  251 (673)
T KOG4378|consen  199 ---------------PIFHASEAHSAPCRGICFSP--SNEALLVSVGYDKKINIYDIRSQ----------ASTDRLTYSH  251 (673)
T ss_pred             ---------------cccchhhhccCCcCcceecC--CccceEEEecccceEEEeecccc----------cccceeeecC
Confidence                           22334567999999999996  56678999999999999999975          2334445677


Q ss_pred             ceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          346 KVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       346 ~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +...++|.+ +|-+|+.|...|.|..||+.
T Consensus       252 Plstvaf~~-~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  252 PLSTVAFSE-CGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             CcceeeecC-CceEEEeecCCceEEEEecc
Confidence            899999999 99999999999999999973

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.9e-24  Score=164.40  Aligned_cols=262  Identities=16%  Similarity=0.219  Sum_probs=184.0

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc--ccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS--WRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDV  127 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i  127 (375)
                      +..+++|...|++++|+.||++|++++.|+.|++|+++.-..  -+.+.. ...-+..+.+.|.||-+-+++.. ....+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence            455678999999999999999999999999999999985211  111111 01123567899999987665554 45579


Q ss_pred             EEEeCcCcee---ee--------eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194          128 KIIDIRQHCL---YK--------SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA  196 (375)
Q Consensus       128 ~iwd~~~~~~---~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  196 (375)
                      ++|.+...+-   ..        .|...|.-.+..+-....+. ++++++.|..|.+|+++ |+.+..+...        
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtn--------  227 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTN--------  227 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccc--------
Confidence            9998753211   10        12214556667777777777 79999999999999999 8888888744        


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                           ...-+..+++|      +|+++++++..-.+++|.+--                    ..||.            
T Consensus       228 -----q~~n~~aavSP------~GRFia~~gFTpDVkVwE~~f--------------------~kdG~------------  264 (420)
T KOG2096|consen  228 -----QSSNYDAAVSP------DGRFIAVSGFTPDVKVWEPIF--------------------TKDGT------------  264 (420)
T ss_pred             -----cccccceeeCC------CCcEEEEecCCCCceEEEEEe--------------------ccCcc------------
Confidence                 34556778888      899999999988999998642                    11221            


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc----ccccceeeeee
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI----NLNKKVNWLCT  352 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~  352 (375)
                      -.....+..+.+|...|..++|+   ++...+++.+.||+++|||++-....-  ..+++++...    .-.+....+..
T Consensus       265 fqev~rvf~LkGH~saV~~~aFs---n~S~r~vtvSkDG~wriwdtdVrY~~~--qDpk~Lk~g~~pl~aag~~p~RL~l  339 (420)
T KOG2096|consen  265 FQEVKRVFSLKGHQSAVLAAAFS---NSSTRAVTVSKDGKWRIWDTDVRYEAG--QDPKILKEGSAPLHAAGSEPVRLEL  339 (420)
T ss_pred             hhhhhhhheeccchhheeeeeeC---CCcceeEEEecCCcEEEeeccceEecC--CCchHhhcCCcchhhcCCCceEEEe
Confidence            11234556899999999999999   999999999999999999987543210  1113333221    12233448899


Q ss_pred             cCCCCCcEEEeeCCCeEEEEe
Q 017194          353 TPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       353 ~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +| +|+.|+.+.. ..++++.
T Consensus       340 sP-~g~~lA~s~g-s~l~~~~  358 (420)
T KOG2096|consen  340 SP-SGDSLAVSFG-SDLKVFA  358 (420)
T ss_pred             CC-CCcEEEeecC-CceEEEE
Confidence            99 8887776543 3455553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2e-25  Score=176.67  Aligned_cols=211  Identities=17%  Similarity=0.206  Sum_probs=173.0

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~   89 (375)
                      -++|++.|..++|+......||||+.|.+|++||+.++++..++..|...|.++.|+|. ...|++|+.|+++.+.|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            35799999999999887789999999999999999999999999999999999999985 56799999999999999985


Q ss_pred             CCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .......-.+   .+.|-.++|.|.. ..++++..||+|+-+|++.. +++.+++ .|..+|.++++++..++++++++.
T Consensus       319 ~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  319 PSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             ccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccc
Confidence            3332222233   5789999999954 56788889999999999965 8899999 999999999999998889999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      |+.|++|++....+.......           +.-+...|.++.|.     ..-+++.|+..+.+++||+.+..
T Consensus       395 d~~Vklw~~~~~~~~~v~~~~-----------~~~~rl~c~~~~~~-----~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPKSVKEHS-----------FKLGRLHCFALDPD-----VAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cceEEEEeecCCCCccccccc-----------ccccceeecccCCC-----cceEEEecCccceEEEeecccCh
Confidence            999999998755442221100           01134667777774     45678888888899999998753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=6.5e-25  Score=181.35  Aligned_cols=258  Identities=16%  Similarity=0.133  Sum_probs=185.9

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE--eeecCccEEEEEEeCCC-CeEEEEcCCCeEEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKS   84 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~i   84 (375)
                      ++....|...|..+.|-|- ...|++++.|.++++||+++.++...  +.+|...|.+++|.|.. ..+++|+.||.|.|
T Consensus        93 lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             hcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            3556689999999999994 88999999999999999999988666  88999999999999865 46889999999999


Q ss_pred             EECCCCCc--------------------c----cccccccCCCcceeE---EEEcCCCCeEEEEeC-CCcEEEEeCcCce
Q 017194           85 FDVHMPAS--------------------W----RPLESYNYNKEEINQ---IVCNPKSSFLACADD-GGDVKIIDIRQHC  136 (375)
Q Consensus        85 wd~~~~~~--------------------~----~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~  136 (375)
                      ||++-...                    .    +.+.....+...|.+   +.+..|...||+++. |+.|+|||+++..
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            99864220                    0    011112233444555   556678888998887 9999999998653


Q ss_pred             eeee--------EecCc---ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCC
Q 017194          137 LYKS--------LRAGH---SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPA  203 (375)
Q Consensus       137 ~~~~--------~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  203 (375)
                      ....        +. .|   ...+.++.....|.+++|+|. |+.|++|++.+-..  +..+. +         .. ...
T Consensus       252 ~~~r~ep~~~~~~~-t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~s-g---------~~-~~s  318 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYP-THSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFS-G---------KL-NSS  318 (720)
T ss_pred             cccccCCCcccCcc-CcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhcc-C---------cc-cce
Confidence            3221        11 22   235677777777886566665 99999999986432  22221 1         00 011


Q ss_pred             ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee
Q 017194          204 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD  283 (375)
Q Consensus       204 ~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~  283 (375)
                      .-..-..+|      ++..+++|+.|...++|.+.+...                                       ..
T Consensus       319 f~vks~lSp------d~~~l~SgSsd~~ayiw~vs~~e~---------------------------------------~~  353 (720)
T KOG0321|consen  319 FYVKSELSP------DDCSLLSGSSDEQAYIWVVSSPEA---------------------------------------PP  353 (720)
T ss_pred             eeeeeecCC------CCceEeccCCCcceeeeeecCccC---------------------------------------Ch
Confidence            111223344      899999999999999999987532                                       22


Q ss_pred             eeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       284 ~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      ..+.+|...|++++|.|  ..-.-++++++|..+++|++..+-
T Consensus       354 ~~l~Ght~eVt~V~w~p--S~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  354 ALLLGHTREVTTVRWLP--SATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             hhhhCcceEEEEEeecc--ccCCCceeeccCcceEEEeccCch
Confidence            36779999999999985  233457777999999999997663

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.2e-24  Score=162.21  Aligned_cols=250  Identities=14%  Similarity=0.133  Sum_probs=180.1

Q ss_pred             EEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeee
Q 017194           61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS  140 (375)
Q Consensus        61 v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  140 (375)
                      -.++.|++.|.+||+|+.+|.|.|||+.|..   .-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..+.+++.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            6899999999999999999999999999743   4556677899999999999999999999999999999999999999


Q ss_pred             EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      ++  ..++|+...|+|...+.+++.-.+..-.+-++..  +.+.+-...++...       .....+..|.+      .|
T Consensus       103 ir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dl-------n~sas~~~fdr------~g  165 (405)
T KOG1273|consen  103 IR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDL-------NSSASHGVFDR------RG  165 (405)
T ss_pred             EE--ccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccc-------ccccccccccC------CC
Confidence            98  7899999999998775555554454455555543  22222111000000       01111223444      79


Q ss_pred             CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC-ccEEEEEEe
Q 017194          221 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFS  299 (375)
Q Consensus       221 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s  299 (375)
                      +++++|...|.+.+||..+.                                        +++..++-.. ..|..+.++
T Consensus       166 ~yIitGtsKGkllv~~a~t~----------------------------------------e~vas~rits~~~IK~I~~s  205 (405)
T KOG1273|consen  166 KYIITGTSKGKLLVYDAETL----------------------------------------ECVASFRITSVQAIKQIIVS  205 (405)
T ss_pred             CEEEEecCcceEEEEecchh----------------------------------------eeeeeeeechheeeeEEEEe
Confidence            99999999999999999974                                        2333333323 678889999


Q ss_pred             ecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc--cccceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194          300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  374 (375)
Q Consensus       300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~  374 (375)
                         ..|++|+.-+.|+.|+.|+++.-.........+....+..  ..-.-.+++|+. +|.|++.++ ....++||.-
T Consensus       206 ---~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~  279 (405)
T KOG1273|consen  206 ---RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEK  279 (405)
T ss_pred             ---ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEec
Confidence               8999999999999999999884322111111122222222  223345678888 999998877 4468999963

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=8.9e-26  Score=172.06  Aligned_cols=264  Identities=16%  Similarity=0.161  Sum_probs=196.0

Q ss_pred             CCCceeEEEEecC---CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCC
Q 017194           14 HKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        14 h~~~i~~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~   89 (375)
                      |++.-..++|+-+   +..++|.||.-|.|+|.|+.+++....+.+|...|+.+.+.|+. +++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            6777888899765   23578999999999999999999999999999999999999975 5788999999999999999


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee-------------------------eE--e
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK-------------------------SL--R  142 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------~~--~  142 (375)
                      ..+...+....+|...|.++.|++++.+|++++.|.++++|++...+...                         .|  .
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            99999999999999999999999999999999999999999997321100                         00  0


Q ss_pred             cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC
Q 017194          143 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK  221 (375)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  221 (375)
                      .-|...|.|+.|-.+   ++++-+.++.|..|..- -++.+..++.+.....-....-+....+.-+.|.-    ++-++
T Consensus       248 diHrnyVDCvrw~gd---~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~----d~~~~  320 (385)
T KOG1034|consen  248 DIHRNYVDCVRWFGD---FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF----DPWQK  320 (385)
T ss_pred             ccccchHHHHHHHhh---heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee----cHHHH
Confidence            146777888887653   78999999999999872 22222212111000000000111223445554433    33689


Q ss_pred             EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec
Q 017194          222 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF  301 (375)
Q Consensus       222 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  301 (375)
                      .||.|.+.|.|.+||++.......                                  -++...  .....|+..+|+  
T Consensus       321 ~la~gnq~g~v~vwdL~~~ep~~~----------------------------------ttl~~s--~~~~tVRQ~sfS--  362 (385)
T KOG1034|consen  321 MLALGNQSGKVYVWDLDNNEPPKC----------------------------------TTLTHS--KSGSTVRQTSFS--  362 (385)
T ss_pred             HHhhccCCCcEEEEECCCCCCccC----------------------------------ceEEec--cccceeeeeeec--
Confidence            999999999999999997432200                                  011111  124678999999  


Q ss_pred             CCCCcEEEEecCCCeEEEEeCC
Q 017194          302 GERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       302 ~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                       .||.+|+...+|++|.-||.-
T Consensus       363 -~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  363 -RDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             -ccCcEEEEEeCCCcEEEEEee
Confidence             999999999999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.94  E-value=1.8e-24  Score=180.19  Aligned_cols=279  Identities=13%  Similarity=0.127  Sum_probs=213.3

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      .|+.++|-|| |..|+.+.. ..+.+||.+.|..++++++|.+.|++++|+.+|+.+++|+.|+.|.+|+.+-    +-+
T Consensus        14 ci~d~afkPD-GsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl----EG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPD-GTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL----EGI   87 (1081)
T ss_pred             chheeEECCC-CceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc----cce
Confidence            8999999999 555554443 3699999999999999999999999999999999999999999999999763    222


Q ss_pred             ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194           97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      -.+ .|...|.|+.|+|-.+.|++++- ...-+|..+.... ...+  ....+.+.+|..||. +++.|-.+|+|.+-+-
T Consensus        88 LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k--ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   88 LKY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK--SSSRIICCSWTNDGQ-YLALGMFNGTISIRNK  161 (1081)
T ss_pred             eee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh--hheeEEEeeecCCCc-EEEEeccCceEEeecC
Confidence            222 36899999999999889998875 3577898765433 3333  356788999999999 7999999999999864


Q ss_pred             CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCc
Q 017194          177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS  256 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  256 (375)
                      . +++...++-+  .        ....+|.+++|+|..-. .....+++.....++.+|.+...                
T Consensus       162 ~-gEek~~I~Rp--g--------g~Nspiwsi~~~p~sg~-G~~di~aV~DW~qTLSFy~LsG~----------------  213 (1081)
T KOG1538|consen  162 N-GEEKVKIERP--G--------GSNSPIWSICWNPSSGE-GRNDILAVADWGQTLSFYQLSGK----------------  213 (1081)
T ss_pred             C-CCcceEEeCC--C--------CCCCCceEEEecCCCCC-CccceEEEEeccceeEEEEecce----------------
Confidence            3 5544444421  0        03478999999995221 12356788888888888877741                


Q ss_pred             eeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhh
Q 017194          257 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL  336 (375)
Q Consensus       257 ~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  336 (375)
                                               .+..-+.-.-...++.+.   ++|.|++.|+.|+.+.+|--+.          -.
T Consensus       214 -------------------------~Igk~r~L~FdP~CisYf---~NGEy~LiGGsdk~L~~fTR~G----------vr  255 (1081)
T KOG1538|consen  214 -------------------------QIGKDRALNFDPCCISYF---TNGEYILLGGSDKQLSLFTRDG----------VR  255 (1081)
T ss_pred             -------------------------eecccccCCCCchhheec---cCCcEEEEccCCCceEEEeecC----------eE
Confidence                                     111112223345677787   8999999999999999997665          34


Q ss_pred             hhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          337 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       337 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +.+.......|+.++..| ++++++.|+.||+|..|++
T Consensus       256 LGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  256 LGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence            455566778999999999 9999999999999988875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.93  E-value=1.2e-24  Score=161.18  Aligned_cols=302  Identities=13%  Similarity=0.128  Sum_probs=208.2

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .+...|++|.+.|+|+.|..+  .+|.+|..-|.|++|++++......++ .+...|+.+.-.|+ ..+.+-+.|..+.+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CCeeEeccccchheehhhccc--hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            456788899999999999876  469999999999999999998888888 57889999999887 46888999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcC-----CC----CeEEEEeCCC-cEEEEeCcCceeeeeEec---CcccceeE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNP-----KS----SFLACADDGG-DVKIIDIRQHCLYKSLRA---GHSSICSS  151 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~l~~~~~dg-~i~iwd~~~~~~~~~~~~---~~~~~v~~  151 (375)
                      |++.-+... .+     |.-.++++.|.+     ++    ..++.-++.. .+++-|......+.....   +..+.+.+
T Consensus        82 w~ia~s~~i-~i-----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   82 WTIAYSAFI-SI-----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             EEccCcceE-EE-----eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            999853221 11     122344444443     11    1122211111 122222222222221110   23445666


Q ss_pred             EEEee-CCC-cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          152 VQFIP-WKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       152 ~~~~~-~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      ..+.. .+. .+++.|.++|.+.+||+.++..+..++...+.   ......|..++.++.+.+      .-..=++|+.+
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv---~~~~ash~qpvlsldyas------~~~rGisgga~  226 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV---ESPNASHKQPVLSLDYAS------SCDRGISGGAD  226 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc---ccchhhccCcceeeeech------hhcCCcCCCcc
Confidence            65432 222 35777889999999999988544433322110   122233677899999977      34555777888


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI  309 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~  309 (375)
                      ..+..|++.....                                    .++...+..-....|..+.+-   ||++.+|
T Consensus       227 dkl~~~Sl~~s~g------------------------------------slq~~~e~~lknpGv~gvrIR---pD~KIlA  267 (323)
T KOG0322|consen  227 DKLVMYSLNHSTG------------------------------------SLQIRKEITLKNPGVSGVRIR---PDGKILA  267 (323)
T ss_pred             ccceeeeeccccC------------------------------------cccccceEEecCCCccceEEc---cCCcEEe
Confidence            8899998874211                                    111112222234568888888   9999999


Q ss_pred             EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          310 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       310 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |++.|+.|+||+.++.         ..+..+.-|.+.|++++|+| +.+.+|+++.|++|-+|++
T Consensus       268 TAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  268 TAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             ecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            9999999999999999         77889999999999999999 8889999999999999987

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.93  E-value=8.8e-23  Score=153.39  Aligned_cols=302  Identities=13%  Similarity=0.107  Sum_probs=212.8

Q ss_pred             CCCCeeeecCCCceeEEEEe--cCCCCEEEEeCC----CCcEEEEecc--cCceeeEe-eecCccEEEEEEeCCCC----
Q 017194            5 EAKPRRLRGHKATATCCIAS--RDRPGFVASSGE----DGCICWFDLR--SKDVQLVT-DVGNGPVTSLCFKSGNE----   71 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~--~~~~~~l~s~~~----d~~i~iw~~~--~~~~~~~~-~~~~~~v~~l~~~~~~~----   71 (375)
                      ++++..+..+ -+++++.|+  |+.+.+||.|+-    .+.|.|-.+.  +++.+..- ..|.-+++.+.|.|+..    
T Consensus        35 ~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   35 RKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             cceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence            3444444443 357889998  444567888863    3566666554  34432222 24889999999999763    


Q ss_pred             -eEEEEcCCCeEEEEECCCCCc-cccccc-----ccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCce---eeee
Q 017194           72 -DIIYVSSGKEVKSFDVHMPAS-WRPLES-----YNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHC---LYKS  140 (375)
Q Consensus        72 -~l~~~~~d~~i~iwd~~~~~~-~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~  140 (375)
                       +||+.  +..+++|.+..... ......     -..+..+++++.|+. +-++|.+++-|-+..|||++++.   ....
T Consensus       114 dlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence             34433  46899999874221 111111     123467899999988 66789999999999999999863   3556


Q ss_pred             EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      +- .|..+|..++|...+..+|++.+.||.+++||++..+-...+.-. |.         ...+...++|++.     +-
T Consensus       192 LI-AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-p~---------~~~pLlRLswnkq-----Dp  255 (364)
T KOG0290|consen  192 LI-AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED-PS---------PSTPLLRLSWNKQ-----DP  255 (364)
T ss_pred             EE-ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-CC---------CCCcceeeccCcC-----Cc
Confidence            66 899999999999987779999999999999999987655544322 11         1346778888875     67


Q ss_pred             CEEEEEecC-CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194          221 KICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  299 (375)
Q Consensus       221 ~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  299 (375)
                      +++|+-..| ..|.+.|++..                                       ...+.++.+|.+.|+.++|.
T Consensus       256 nymATf~~dS~~V~iLDiR~P---------------------------------------~tpva~L~~H~a~VNgIaWa  296 (364)
T KOG0290|consen  256 NYMATFAMDSNKVVILDIRVP---------------------------------------CTPVARLRNHQASVNGIAWA  296 (364)
T ss_pred             hHHhhhhcCCceEEEEEecCC---------------------------------------CcceehhhcCcccccceEec
Confidence            777766544 57999999964                                       24556899999999999999


Q ss_pred             ecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194          300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  371 (375)
Q Consensus       300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i  371 (375)
                      |  .....|++++.|..+.+||+......  ....+++ .+. -.+.|+.+.|+|..+++|+.+.. +.+.+
T Consensus       297 P--hS~~hictaGDD~qaliWDl~q~~~~--~~~dPil-ay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  297 P--HSSSHICTAGDDCQALIWDLQQMPRE--NGEDPIL-AYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             C--CCCceeeecCCcceEEEEeccccccc--CCCCchh-hhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            7  45679999999999999999876321  0000121 222 56789999999877888888764 34444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.4e-24  Score=172.87  Aligned_cols=227  Identities=15%  Similarity=0.198  Sum_probs=168.5

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeC--CCCeEEEEcCCCeEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKS--GNEDIIYVSSGKEVK   83 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~~~~d~~i~   83 (375)
                      ..+.|+||++.|+|++|+.+ |.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|  +.+.+++|+.|..|+
T Consensus        42 lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            45678999999999999999 9999999999999999998888777764 7999999999988  456789999999999


Q ss_pred             EEECCCCC-------cccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCcee----------eeeEecCc
Q 017194           84 SFDVHMPA-------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCL----------YKSLRAGH  145 (375)
Q Consensus        84 iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~  145 (375)
                      ++|+...+       .......+..|...|..++-.|++ +.+.++++||+|+-+|++....          +..+. ..
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~-~~  199 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN-PQ  199 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc-hh
Confidence            99998522       234455667788999999999988 7799999999999999985321          11111 22


Q ss_pred             ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc------------------ceEEecCCCCCCCCCC-cccCCCcee
Q 017194          146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP------------------NKIVNFGLPENNGNAG-QCYNPAFVH  206 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------------------~~~~~~~~~~~~~~~~-~~~~~~~v~  206 (375)
                      .-...++..+|..+++|++|+.|-..++||.+...+                  +..+..+.  .....+ .......++
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h--lkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH--LKNSQGNLDRYITCCT  277 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc--ccCcccccccceeeeE
Confidence            346789999999998999999999999999543211                  11111010  000000 000112357


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      .+.|+|      +|..|++.-..-.|+++|+..++.+
T Consensus       278 ~vtfnp------NGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  278 YVTFNP------NGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             EEEECC------CCcEEEEeeCCeEEEEEeecCCCCc
Confidence            788888      7887777766668999998765443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=167.50  Aligned_cols=247  Identities=14%  Similarity=0.170  Sum_probs=198.3

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCce
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHC  136 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  136 (375)
                      .+.|+++.|+|....+++++.|+.+++|.+. ++....++.+.....+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            5789999999999999999999999999998 444456666665678999999999998 88999999999999998876


Q ss_pred             ee--eeEecCcc-cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          137 LY--KSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       137 ~~--~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                      ..  ..+. ++. ..+.....+|+++ +++..+..|.|.+....+++.+..++..              +.+..++|+. 
T Consensus       292 ~~k~~~~~-g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Kie--------------G~v~~~~fsS-  354 (514)
T KOG2055|consen  292 VTKLKPPY-GVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIE--------------GVVSDFTFSS-  354 (514)
T ss_pred             cccccCCC-CcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeec--------------cEEeeEEEec-
Confidence            53  3333 333 4567788899999 7999999999999999999999999865              8999999997 


Q ss_pred             ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-Ccc
Q 017194          214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAA  292 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  292 (375)
                           +++.|++.+.+|.|.+||++...                                        +++.+... .-.
T Consensus       355 -----dsk~l~~~~~~GeV~v~nl~~~~----------------------------------------~~~rf~D~G~v~  389 (514)
T KOG2055|consen  355 -----DSKELLASGGTGEVYVWNLRQNS----------------------------------------CLHRFVDDGSVH  389 (514)
T ss_pred             -----CCcEEEEEcCCceEEEEecCCcc----------------------------------------eEEEEeecCccc
Confidence                 79999999999999999999742                                        22222221 112


Q ss_pred             EEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee--CCCeEE
Q 017194          293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD--TSKVVK  370 (375)
Q Consensus       293 v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~  370 (375)
                      =++++.|   +++.|||+|+..|.|.|||.++...   ...++++..+..-...|+++.|++ |++.||.+|  .+..++
T Consensus       390 gts~~~S---~ng~ylA~GS~~GiVNIYd~~s~~~---s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalr  462 (514)
T KOG2055|consen  390 GTSLCIS---LNGSYLATGSDSGIVNIYDGNSCFA---STNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALR  462 (514)
T ss_pred             eeeeeec---CCCceEEeccCcceEEEeccchhhc---cCCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceE
Confidence            3556777   8999999999999999999776422   122266677777888999999999 999998887  456677


Q ss_pred             EEec
Q 017194          371 VYSI  374 (375)
Q Consensus       371 iw~~  374 (375)
                      +-.+
T Consensus       463 LVHv  466 (514)
T KOG2055|consen  463 LVHV  466 (514)
T ss_pred             EEec
Confidence            6544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.5e-22  Score=146.51  Aligned_cols=283  Identities=15%  Similarity=0.168  Sum_probs=196.2

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccC---------c-eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSK---------D-VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---------~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ..|.+-+++|. +++|+.|..+|.|.+..+.+.         + .+...++|.++|+.++|.  ..+|++++ ||.|+-|
T Consensus        11 ~tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            34666689998 899999999999999997631         1 244457899999999998  45677766 6999999


Q ss_pred             ECCCCCc---ccccccc--cC-----CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           86 DVHMPAS---WRPLESY--NY-----NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        86 d~~~~~~---~~~~~~~--~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                      ..+....   .+++-..  +.     .-..|+++-..|..+-++.++.|+.++.||+++|+..+.++ +|++.+.++.--
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R  165 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGR  165 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeec
Confidence            8764221   0111000  11     12468899999988787777799999999999999999999 999999999885


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  235 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  235 (375)
                      .... .+++|++||++++||.++++.+..+.....+   .-.......+|.+++.        +..+|++|+. ..+.+|
T Consensus       166 ~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~---~~lRp~~g~wigala~--------~edWlvCGgG-p~lslw  232 (325)
T KOG0649|consen  166 NANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNP---NLLRPDWGKWIGALAV--------NEDWLVCGGG-PKLSLW  232 (325)
T ss_pred             ccCc-ceeecCCCccEEEEeccccceeEEeccccCh---hhcCcccCceeEEEec--------cCceEEecCC-CceeEE
Confidence            5444 5999999999999999999999888743100   0001112356777877        5778888765 479999


Q ss_pred             eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194          236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK  315 (375)
Q Consensus       236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg  315 (375)
                      .++..+                                      ..++..+.   .++..+.|-     ...++++++.+
T Consensus       233 hLrsse--------------------------------------~t~vfpip---a~v~~v~F~-----~d~vl~~G~g~  266 (325)
T KOG0649|consen  233 HLRSSE--------------------------------------STCVFPIP---ARVHLVDFV-----DDCVLIGGEGN  266 (325)
T ss_pred             eccCCC--------------------------------------ceEEEecc---cceeEeeee-----cceEEEecccc
Confidence            999642                                      23333444   446677775     34777888888


Q ss_pred             eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          316 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       316 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      .|.-|.+..--          -......+...+...|+..--++|-.++....+.|+
T Consensus       267 ~v~~~~l~Gvl----------~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  267 HVQSYTLNGVL----------QANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ceeeeeeccEE----------EEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            89999887632          112222233344455543223455556666666654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=9.5e-24  Score=167.87  Aligned_cols=264  Identities=16%  Similarity=0.177  Sum_probs=193.1

Q ss_pred             ecccCceeeEeeecCccEEEEEEeCCCC--eEEEEcCCCeEEEEECCC-CCcccccccccCCCcceeEEEEcCC-CCeEE
Q 017194           44 DLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPK-SSFLA  119 (375)
Q Consensus        44 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~  119 (375)
                      |+..-.....+..+.++|++++|+|..+  .+++|...|+|-+||+.+ ++....+..+..|..+|.++.|+|. ...++
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence            3334444556677899999999999654  677777889999999953 3334556667789999999999995 46799


Q ss_pred             EEeCCCcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCC
Q 017194          120 CADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNA  196 (375)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~  196 (375)
                      +.+.||+|+.-|++....  +..+. .....+.++.|+.+.. .++.+..=|...+||++++.. ...+..         
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l---------  320 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL---------  320 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh---------
Confidence            999999999999987643  33333 3455777888988887 577777777999999998765 333333         


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                          |...|.+|+++|.     ...+|++++.|++.+|||++......                                
T Consensus       321 ----h~kKI~sv~~NP~-----~p~~laT~s~D~T~kIWD~R~l~~K~--------------------------------  359 (498)
T KOG4328|consen  321 ----HKKKITSVALNPV-----CPWFLATASLDQTAKIWDLRQLRGKA--------------------------------  359 (498)
T ss_pred             ----hhcccceeecCCC-----CchheeecccCcceeeeehhhhcCCC--------------------------------
Confidence                4568999999997     78899999999999999999632111                                


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc------ceeee
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------KVNWL  350 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~  350 (375)
                          ..+.....|...|.+..||   |.+..|++.+.|..|+|||..-....      ........|..      .....
T Consensus       360 ----sp~lst~~HrrsV~sAyFS---Ps~gtl~TT~~D~~IRv~dss~~sa~------~~p~~~I~Hn~~t~RwlT~fKA  426 (498)
T KOG4328|consen  360 ----SPFLSTLPHRRSVNSAYFS---PSGGTLLTTCQDNEIRVFDSSCISAK------DEPLGTIPHNNRTGRWLTPFKA  426 (498)
T ss_pred             ----CcceecccccceeeeeEEc---CCCCceEeeccCCceEEeeccccccc------CCccceeeccCcccccccchhh
Confidence                1122455789999999999   77777999999999999998511000      11112223322      13345


Q ss_pred             eecCCCCCcEEEeeCCCeEEEEe
Q 017194          351 CTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       351 ~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +|.| +..++++|-.-..|-|+|
T Consensus       427 ~W~P-~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  427 AWDP-DYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             eeCC-CccEEEEeccCcceeEEc
Confidence            7888 888888887777777765

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.3e-24  Score=189.60  Aligned_cols=249  Identities=17%  Similarity=0.183  Sum_probs=197.0

Q ss_pred             CceeEEEEecCCCC---EEEEeCCCCcEEEEecccC------ceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEE
Q 017194           16 ATATCCIASRDRPG---FVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSF   85 (375)
Q Consensus        16 ~~i~~~~~~~~~~~---~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iw   85 (375)
                      ..-+.++|.+.+..   +||.|.+||.|.+||...-      ..+.+...|++.|..+.|++... .|++|+.+|.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45688999887333   4999999999999998652      23666778999999999999765 89999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCccc--ceeEEEEeeCCCcEE
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS--ICSSVQFIPWKPWEV  162 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l  162 (375)
                      |+...+...... -....+.|.+++|+.. .+.|++++.+|.+.|||++..+.+..+. .+..  .+..++|+|++...+
T Consensus       145 Dlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  145 DLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             ccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cCCCccceeeeeeCCCCceee
Confidence            998643322222 1123678999999985 4568889999999999999888877776 4443  478999999987677


Q ss_pred             EEeecCC---eEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          163 ISGGLDS---KLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       163 ~~~~~d~---~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      ++++.|.   .|.+||+|.. .+++.++ +            |...|.++.|++.     |..+|++++.|+.|.+|+..
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~~-~------------H~~GilslsWc~~-----D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKILE-G------------HQRGILSLSWCPQ-----DPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhhc-c------------cccceeeeccCCC-----CchhhhcccCCCCeeEecCC
Confidence            7777654   6999999864 3444543 3            6789999999996     67999999999999999999


Q ss_pred             CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEE
Q 017194          239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK  318 (375)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~  318 (375)
                      ++                                        +.+.++......+..+.|+|  .+-..+++++-||.|.
T Consensus       285 tg----------------------------------------Evl~~~p~~~nW~fdv~w~p--r~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  285 TG----------------------------------------EVLGELPAQGNWCFDVQWCP--RNPSVMAAASFDGKIS  322 (1049)
T ss_pred             Cc----------------------------------------eEeeecCCCCcceeeeeecC--CCcchhhhheecccee
Confidence            86                                        44556666678999999995  3334888999999999


Q ss_pred             EEeCCCce
Q 017194          319 VWDCSRFQ  326 (375)
Q Consensus       319 iwd~~~~~  326 (375)
                      ||.+....
T Consensus       323 I~sl~~~~  330 (1049)
T KOG0307|consen  323 IYSLQGTD  330 (1049)
T ss_pred             eeeeecCC
Confidence            99998764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=168.35  Aligned_cols=314  Identities=16%  Similarity=0.143  Sum_probs=234.9

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe-eecCccEEEEEEeCC--CCeEEEEcCCCeE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSG--NEDIIYVSSGKEV   82 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~l~~~~~--~~~l~~~~~d~~i   82 (375)
                      .....|..|.+.|+.+.|+.. |..|++|+.|..|.+||+.++.....+ .+|...|....|-|.  .+.+++++.||.+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            345678899999999999998 899999999999999999998876655 478888888888774  4579999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEec--Cccc---ceeEEEEee
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRA--GHSS---ICSSVQFIP  156 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~---~v~~~~~~~  156 (375)
                      ++=.+.........+.+..|.++|..++.-|+.. .|.+++.|+.+.-+|++.+.....+..  .+..   ...+++..|
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            9988765555555666777899999999999764 488999999999999987654333221  2333   567899999


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcc------eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPN------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      ...+.+++++.|..+++||.+.-...      ..+...       ...--.+..|++++++.      ++.-|.++..|-
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~-------hl~~d~~v~ITgl~Ysh------~~sElLaSYnDe  358 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH-------HLVEDDPVNITGLVYSH------DGSELLASYNDE  358 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCc-------cccccCcccceeEEecC------Cccceeeeeccc
Confidence            98888999999999999998753221      111111       00001356799999997      577777777787


Q ss_pred             cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee-eecCCCc--cEEEEEEeecCCCCcE
Q 017194          231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY-SVGGHTA--AASCVAFSMFGERGKY  307 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~s~~~~~~~~  307 (375)
                      .|+++.-..+.-..  .         ...+|.                 .+.+. .+++|..  .|..+-|-  +|...|
T Consensus       359 ~IYLF~~~~~~G~~--p---------~~~s~~-----------------~~~~k~vYKGHrN~~TVKgVNFf--GPrsEy  408 (559)
T KOG1334|consen  359 DIYLFNKSMGDGSE--P---------DPSSPR-----------------EQYVKRVYKGHRNSRTVKGVNFF--GPRSEY  408 (559)
T ss_pred             ceEEeccccccCCC--C---------CCCcch-----------------hhccchhhcccccccccceeeec--cCccce
Confidence            89999443221000  0         000000                 01122 3677744  47777664  388999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          308 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       308 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +++|+.-|.|.||+-.++         ++++...+-...|+|+.-+|.. -.||+++-|.-|+||.
T Consensus       409 VvSGSDCGhIFiW~K~t~---------eii~~MegDr~VVNCLEpHP~~-PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  409 VVSGSDCGHIFIWDKKTG---------EIIRFMEGDRHVVNCLEPHPHL-PVLASSGIDHDVKIWT  464 (559)
T ss_pred             EEecCccceEEEEecchh---------HHHHHhhcccceEeccCCCCCC-chhhccCCccceeeec
Confidence            999999999999999998         8888888877799999999944 5899999999999995

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=9.3e-23  Score=159.45  Aligned_cols=229  Identities=14%  Similarity=0.125  Sum_probs=171.2

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------eeeEeeecCccEEEEEEeCCC-CeEEEEcCCCe
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKE   81 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~   81 (375)
                      .+.||+++|..++|+|-+...||||++|.+|.||++..+.       ++..+.+|...|--++|+|.. +.|++++.|++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999988999999999999999987543       477889999999999999964 56889999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc-ceeEEEEeeCCCc
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS-ICSSVQFIPWKPW  160 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  160 (375)
                      |.+||+.+++....+.    |...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-. +|.+ .-....|..++. 
T Consensus       156 v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~-  229 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK-  229 (472)
T ss_pred             EEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-
Confidence            9999999986554443    79999999999999999999999999999999999988876 7765 334556778886 


Q ss_pred             EEEEee---cCCeEEEeeCCCCCcc-eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE-EEecCCcEEEE
Q 017194          161 EVISGG---LDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVI  235 (375)
Q Consensus       161 ~l~~~~---~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~  235 (375)
                      ++-+|.   ++.++-+||...-+.. ...++.            ....|.---+      +++.++++ +|-.|+.|+-|
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD------------tSnGvl~PFy------D~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD------------TSNGVLLPFY------DPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEec------------cCCceEEeee------cCCCCEEEEEecCCcceEEE
Confidence            455553   5778999998764432 222222            1233333333      33666655 55589999999


Q ss_pred             eCCCcc--eeecccccCCCCCCceeeccc
Q 017194          236 NIESEL--NISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       236 d~~~~~--~~~~~~~~~~~~~~~~~~s~~  262 (375)
                      .+....  ..+........+.+.+.+.|.
T Consensus       292 Eit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  292 EITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             EecCCCceeEEecccccCCcccccccccc
Confidence            998754  222222333344445544443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.3e-23  Score=171.41  Aligned_cols=262  Identities=14%  Similarity=0.139  Sum_probs=196.7

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc--------CceeeEeeecCccEEEEEEeCCCCeEEEEcC
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS   78 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~--------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~   78 (375)
                      ...++..|.+.|+.++|.|. ...|++++.||+|++|+++.        -+++.++.+|.++|.|+++.+++.++++|+.
T Consensus       286 ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             eeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            34478889999999999998 78999999999999999943        2357889999999999999999999999999


Q ss_pred             CCeEEEEECCCC-------CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-Cccccee
Q 017194           79 GKEVKSFDVHMP-------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICS  150 (375)
Q Consensus        79 d~~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~  150 (375)
                      ||+|+.|++...       ........+.+|...|+.+++++....|++++.||+++.|+...... .+|.. ...+...
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999999976521       11233456778999999999999999999999999999999876555 33331 1223445


Q ss_pred             EEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          151 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      ++.+-.....+.++...-+.-.++++.....+..+....      .........+..+..+|      +..+.+++..|+
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~------~~~~~~~~~in~vVs~~------~~~~~~~~hed~  511 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA------SPGPRRYPQINKVVSHP------TADITFTAHEDR  511 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccC------CCcccccCccceEEecC------CCCeeEecccCC
Confidence            666654432223333333333344444444444433220      01111224567778888      689999999999


Q ss_pred             cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE
Q 017194          231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS  310 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s  310 (375)
                      .|+++|..++                                        .++.....|...++++++.   |+|.+|++
T Consensus       512 ~Ir~~dn~~~----------------------------------------~~l~s~~a~~~svtslai~---~ng~~l~s  548 (577)
T KOG0642|consen  512 SIRFFDNKTG----------------------------------------KILHSMVAHKDSVTSLAID---PNGPYLMS  548 (577)
T ss_pred             ceeccccccc----------------------------------------ccchheeeccceecceeec---CCCceEEe
Confidence            9999999875                                        5566788899999999999   99999999


Q ss_pred             ecCCCeEEEEeCCCc
Q 017194          311 GGNDKLVKVWDCSRF  325 (375)
Q Consensus       311 ~~~dg~i~iwd~~~~  325 (375)
                      ++.||.+++|.+...
T Consensus       549 ~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  549 GSHDGSVRLWKLDVK  563 (577)
T ss_pred             ecCCceeehhhccch
Confidence            999999999999876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=6.9e-21  Score=166.53  Aligned_cols=292  Identities=23%  Similarity=0.354  Sum_probs=224.5

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-eeeEeeecC-ccEEEEEE-eCCCC-eEEEEcC-CCeEEE
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTDVGN-GPVTSLCF-KSGNE-DIIYVSS-GKEVKS   84 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~-~~v~~l~~-~~~~~-~l~~~~~-d~~i~i   84 (375)
                      .+..|...+.++.+.+. +..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ .+++. .++..+. |+.+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            46689999999999998 8889999999999999998886 666666644 37777777 78777 4554444 899999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      |+...  .......+..|...|..+.|+|++..+++++. ++.+++|++..+..+..+. +|...+.+++|+|++..+++
T Consensus       139 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~  215 (466)
T COG2319         139 WDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIA  215 (466)
T ss_pred             EEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEE
Confidence            99985  12445556667889999999999998888885 9999999999888888888 89999999999999873455


Q ss_pred             EeecCCeEEEeeCCCCCcce-EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          164 SGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      +++.|+.+++||...+.... .+..             +.... ...|+|      ++..+++++.|+.+++|++.....
T Consensus       216 ~~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~~~-~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         216 SGSSDGTIRLWDLSTGKLLRSTLSG-------------HSDSV-VSSFSP------DGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             EecCCCcEEEEECCCCcEEeeecCC-------------CCcce-eEeECC------CCCEEEEecCCCcEEEeeecCCCc
Confidence            55999999999988666665 3332             22332 227877      678888999999999999996421


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                             ....+.+|...+.++.|.   |++..+++++.|+.+.+|+.
T Consensus       276 ---------------------------------------~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~~~~~~~  313 (466)
T COG2319         276 ---------------------------------------LLRTLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDL  313 (466)
T ss_pred             ---------------------------------------EEEEEecCCccEEEEEEC---CCCCEEEEeeCCCcEEEEEc
Confidence                                                   111226778899999999   78888888998999999988


Q ss_pred             CCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe-eCCCeEEEEecC
Q 017194          323 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVYSIS  375 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~iw~~~  375 (375)
                      .........       ....|...+..+.+ +.++..++.+ ..|+.+.+|++.
T Consensus       314 ~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         314 ETGKLLSSL-------TLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             CCCceEEEe-------eecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecC
Confidence            887432111       02467778899999 5343556665 688999999863

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=159.19  Aligned_cols=313  Identities=13%  Similarity=0.070  Sum_probs=219.3

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------CceeeEee-ecCccEEEEEEeCCCCeEEEEcCCC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------KDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      .+-+.+|.+.|+++.|+.+ +++||+|+.|..+++|+++.      .+++.... .|...|.|++|......+++|..++
T Consensus        49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            3457789999999999998 89999999999999999863      24444443 3568999999999999999999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-eeeeE-ecCcccceeEEEEeeCC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSL-RAGHSSICSSVQFIPWK  158 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~~v~~~~~~~~~  158 (375)
                      +|...|+++.+.+..... ....+.|..+..+|..+.+++.+.++.|.+||.+... ....+ ..........+.|+|..
T Consensus       128 ~VI~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANE-NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eeEeeecccceeeeeecc-cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            999999997655443332 2235689999999999999999999999999998654 22222 11344567788999999


Q ss_pred             CcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          159 PWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      +.+|++.+..+-+-+||.+..+. +......       .........-.++.|+|      +|..+++--....-.+||+
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~-------~~L~~~~~~~M~~~~~~------~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMF-------KGLPQENTEWMGSLWSP------SGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhcc-------ccCcccchhhhheeeCC------CCCeehhhhccCCCEEeee
Confidence            88899999999999999986542 1111100       00000011225677887      6887777665556667777


Q ss_pred             CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeE
Q 017194          238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV  317 (375)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i  317 (375)
                      .+.+.......+.          |+|                       ......+.+++|.    +..-+++|+.+-.|
T Consensus       274 ~S~R~~V~k~D~N----------~~G-----------------------Y~N~~T~KS~~F~----~D~~v~tGSD~~~i  316 (609)
T KOG4227|consen  274 ISQRCFVLKSDHN----------PNG-----------------------YCNIKTIKSMTFI----DDYTVATGSDHWGI  316 (609)
T ss_pred             ecccceeEeccCC----------CCc-----------------------ceeeeeeeeeeee----cceeeeccCcccce
Confidence            6532221110000          000                       0012346677775    55669999999999


Q ss_pred             EEEeCCCceeeee--------------cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          318 KVWDCSRFQGVQT--------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       318 ~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      ++|.+.......-              ......+..+.+|...++.+.|+| ...+|++.+..+.+++|.
T Consensus       317 ~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  317 HIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             EEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheeccc
Confidence            9999875432210              011233456789999999999999 667888899999999995

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.91  E-value=4.2e-21  Score=160.57  Aligned_cols=279  Identities=13%  Similarity=0.102  Sum_probs=180.3

Q ss_pred             EEEeCCCCcEEEEeccc-Cc--eeeEeeecCccEEEEEEeCCCCeEEEEc-CCCeEEEEECCCCCcccccccccCCCcce
Q 017194           31 VASSGEDGCICWFDLRS-KD--VQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEI  106 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~-~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  106 (375)
                      +++...++.|.+|++.+ ++  .+..+. +......++++|++++|++++ .++.|.+|++.....+....... .....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence            44456789999999964 33  344444 345677899999999887764 47899999997322222222222 12356


Q ss_pred             eEEEEcCCCCeEEEEe-CCCcEEEEeCcC-ce---eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194          107 NQIVCNPKSSFLACAD-DGGDVKIIDIRQ-HC---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  181 (375)
                      ..++++|+++++++++ .++.|.+|++.+ +.   .+..+.  +......++++|++++++++...++.|.+||+++...
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            7899999999988876 478999999964 22   222232  2345677889999985556677789999999986432


Q ss_pred             ceE-----EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCcceeecccccCCCCCC
Q 017194          182 NKI-----VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKG  255 (375)
Q Consensus       182 ~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~  255 (375)
                      +..     ....            .......++|+|      +++++++++. ++.|.+|++........          
T Consensus       161 l~~~~~~~~~~~------------~g~~p~~~~~~p------dg~~lyv~~~~~~~v~v~~~~~~~~~~~----------  212 (330)
T PRK11028        161 LVAQEPAEVTTV------------EGAGPRHMVFHP------NQQYAYCVNELNSSVDVWQLKDPHGEIE----------  212 (330)
T ss_pred             ccccCCCceecC------------CCCCCceEEECC------CCCEEEEEecCCCEEEEEEEeCCCCCEE----------
Confidence            211     1111            123456789999      8999988876 89999999974210000          


Q ss_pred             ceeecccccceeeeeeeecCCcceeEeeeeec---CCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeeeec
Q 017194          256 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTS  331 (375)
Q Consensus       256 ~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~  331 (375)
                                             ..+.+..+.   .+......+.++   |++++|+++.. ++.|.+|++.......  
T Consensus       213 -----------------------~~~~~~~~p~~~~~~~~~~~i~~~---pdg~~lyv~~~~~~~I~v~~i~~~~~~~--  264 (330)
T PRK11028        213 -----------------------CVQTLDMMPADFSDTRWAADIHIT---PDGRHLYACDRTASLISVFSVSEDGSVL--  264 (330)
T ss_pred             -----------------------EEEEEecCCCcCCCCccceeEEEC---CCCCEEEEecCCCCeEEEEEEeCCCCeE--
Confidence                                   000010111   011233468889   99999998854 7899999996542100  


Q ss_pred             chhhhhhhhcccccceeeeeecCCCCCcEEEeeC-CCeEEEEec
Q 017194          332 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI  374 (375)
Q Consensus       332 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~iw~~  374 (375)
                         +++..... ......+.++| +|++|+++.. +++|.+|++
T Consensus       265 ---~~~~~~~~-~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        265 ---SFEGHQPT-ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             ---EEeEEEec-cccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence               11111111 12455789999 9999988774 899999976

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.3e-22  Score=165.32  Aligned_cols=243  Identities=16%  Similarity=0.129  Sum_probs=188.9

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCe--EEEEeCCCcEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF--LACADDGGDVK  128 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~  128 (375)
                      -..+.+|++.|.+|...|.|..|++|+.||+++||.+.+++++..+..    .+.|.+++|+|.+..  ||++-. ..+.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~-~~~~  467 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVG-ECVL  467 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEec-CceE
Confidence            445678999999999999999999999999999999999988777665    578999999997643  444433 3344


Q ss_pred             EEeCcCc------------------------------------e--eeeeEecCcccceeEEEEeeCCCcEEEEeec---
Q 017194          129 IIDIRQH------------------------------------C--LYKSLRAGHSSICSSVQFIPWKPWEVISGGL---  167 (375)
Q Consensus       129 iwd~~~~------------------------------------~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---  167 (375)
                      +.+..-|                                    +  ....+  .|...|+.+.|+..|. +|++...   
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtWHrkGD-YlatV~~~~~  544 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTWHRKGD-YLATVMPDSG  544 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeeeecCCc-eEEEeccCCC
Confidence            4432211                                    0  01122  4778999999999999 5776654   


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      ...|.|+++...+...-+..             ..+.+.++.|+|      ...+|++++.. .|++||+...       
T Consensus       545 ~~~VliHQLSK~~sQ~PF~k-------------skG~vq~v~FHP------s~p~lfVaTq~-~vRiYdL~kq-------  597 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRK-------------SKGLVQRVKFHP------SKPYLFVATQR-SVRIYDLSKQ-------  597 (733)
T ss_pred             cceEEEEecccccccCchhh-------------cCCceeEEEecC------CCceEEEEecc-ceEEEehhHH-------
Confidence            34788999886654444432             247899999999      57788887764 8999999863       


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                                       .++..+......|..++++   |.|.-|+.|+.|+.+..+|+.-.. 
T Consensus       598 ---------------------------------elvKkL~tg~kwiS~msih---p~GDnli~gs~d~k~~WfDldlss-  640 (733)
T KOG0650|consen  598 ---------------------------------ELVKKLLTGSKWISSMSIH---PNGDNLILGSYDKKMCWFDLDLSS-  640 (733)
T ss_pred             ---------------------------------HHHHHHhcCCeeeeeeeec---CCCCeEEEecCCCeeEEEEcccCc-
Confidence                                             2333444456789999999   999999999999999999998765 


Q ss_pred             eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                             +..+.+..|...++.++|++ .-.++++|+.||.+.|+.
T Consensus       641 -------kPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  641 -------KPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             -------chhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEe
Confidence                   77889999999999999998 667899999999999874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.91  E-value=1.2e-24  Score=185.20  Aligned_cols=286  Identities=17%  Similarity=0.233  Sum_probs=218.0

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      ..++.++.|.||...|+|+.|... |.++++|+.|..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|
T Consensus       178 qkmk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  178 QKMKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence            345667788999999999999998 8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee---eeEecCcccceeEEEEeeCCC
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      ++|.+.++   .++..+.+|++.|++++|+|-.    +.+.||++++||.+-.-.+   +.++.....-+.++.|...+.
T Consensus       257 rvWrl~~~---~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~  329 (1113)
T KOG0644|consen  257 RVWRLPDG---APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD  329 (1113)
T ss_pred             EEEecCCC---chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence            99999864   6677778899999999999964    6779999999998711111   111101234567777888877


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                       .+++++.|+.-..|.+..-...                   ...+.-+..+.+     ...+.+++-.+-.+.+|++.+
T Consensus       330 -~f~Tgs~d~ea~n~e~~~l~~~-------------------~~~lif~t~ssd-----~~~~~~~ar~~~~~~vwnl~~  384 (1113)
T KOG0644|consen  330 -RFLTGSRDGEARNHEFEQLAWR-------------------SNLLIFVTRSSD-----LSSIVVTARNDHRLCVWNLYT  384 (1113)
T ss_pred             -ccccccCCcccccchhhHhhhh-------------------ccceEEEecccc-----ccccceeeeeeeEeeeeeccc
Confidence             6999999998888876532211                   011111111110     234566666777889999987


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      +                                        .+.+.+.+|...+..+.++||  +-....+++.||...|
T Consensus       385 g----------------------------------------~l~H~l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~i  422 (1113)
T KOG0644|consen  385 G----------------------------------------QLLHNLMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTII  422 (1113)
T ss_pred             c----------------------------------------hhhhhhcccccceeeeeecCC--CcHhhhhccCCCceEe
Confidence            5                                        556678899999999999974  4467779999999999


Q ss_pred             EeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          320 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       320 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      ||+-.+..+        -....+| ..+..-.|++ +|..++....-|.++|..
T Consensus       423 wdi~eg~pi--------k~y~~gh-~kl~d~kFSq-dgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  423 WDIWEGIPI--------KHYFIGH-GKLVDGKFSQ-DGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             eecccCCcc--------eeeeccc-ceeeccccCC-CCceEecCCCCCceEEec
Confidence            999988432        1222444 4555668988 888888877778887764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.91  E-value=8.1e-22  Score=174.70  Aligned_cols=329  Identities=16%  Similarity=0.174  Sum_probs=221.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------eeeEeeecCccEEEEEEeCCCCeEEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSGNEDIIYV   76 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~l~~~   76 (375)
                      .|..+.+|..|...|..++.++..+.+++||+.||+|++|+..+-.       ...++......+.++.+.+.++.+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            5677889999999999999988867999999999999999986422       123333347789999999999999999


Q ss_pred             cCCCeEEEEECCCCCc--ccc----cccccCCCccee-EEEEcC-CC-CeEEEEeCCCcEEEEeCcCceeeeeEec-Ccc
Q 017194           77 SSGKEVKSFDVHMPAS--WRP----LESYNYNKEEIN-QIVCNP-KS-SFLACADDGGDVKIIDIRQHCLYKSLRA-GHS  146 (375)
Q Consensus        77 ~~d~~i~iwd~~~~~~--~~~----~~~~~~~~~~v~-~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~  146 (375)
                      +.||.|++.+++....  ...    +..... .+.+. .-+|.. .+ ..++.+...+.|..||++......+++. ...
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~-~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKK-DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccC-CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            9999999999875211  111    111111 22333 334433 22 3678888889999999987766555441 234


Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      +.|++++.+|.+. .++.|+..|.+.+||++-+.++..+..+            +..+++.+..+|.   .+.....+++
T Consensus      1196 G~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P------------~~~~i~~v~~~~~---~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHP------------ARAPIRHVWLCPT---YPQESVSVSA 1259 (1431)
T ss_pred             cceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCc------------ccCCcceEEeecc---CCCCceEEEe
Confidence            6899999999999 5999999999999999999998888866            4578888888874   1222444444


Q ss_pred             e--cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCC
Q 017194          227 K--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER  304 (375)
Q Consensus       227 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  304 (375)
                      +  ..+.|.+|++.++.....+......+...-+ .|..                    ..-+.+.-......+.   ..
T Consensus      1260 ~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~-~Ps~--------------------~~~kp~~~~~~~~~~~---~~ 1315 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWASDGAPILSYA-LPSN--------------------DARKPDSLAGISCGVC---EK 1315 (1431)
T ss_pred             cccCCCceeeeecccCcceEEEEcCCCCcchhhh-cccc--------------------cCCCCCcccceeeecc---cC
Confidence            3  5789999999987544433222100000000 0000                    0000112222222333   45


Q ss_pred             CcEEEEecCCCeEEEEeCCCceeee-----------------------------e-------cchh------hhh-----
Q 017194          305 GKYLISGGNDKLVKVWDCSRFQGVQ-----------------------------T-------SINN------DLL-----  337 (375)
Q Consensus       305 ~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------------~-------~~~~------~~~-----  337 (375)
                      +.++++|+.|..|+.||........                             .       ....      ..+     
T Consensus      1316 ~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred             CceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence            6799999999999999987654320                             0       0000      000     


Q ss_pred             hhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          338 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       338 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      .....|..+|+++++...+..+|++++.||.|+||.
T Consensus      1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            012247889999998875667899999999999994

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=3.2e-22  Score=156.49  Aligned_cols=225  Identities=16%  Similarity=0.267  Sum_probs=169.0

Q ss_pred             CCeEEEEEC-CCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCc-------eeeeeEecCcccce
Q 017194           79 GKEVKSFDV-HMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH-------CLYKSLRAGHSSIC  149 (375)
Q Consensus        79 d~~i~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v  149 (375)
                      .|...+.-+ ++|+.........+|.++|..++|+| +.+.||+|++|.+|.||++-.+       +.+..+. +|...|
T Consensus        56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrV  134 (472)
T KOG0303|consen   56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRV  134 (472)
T ss_pred             CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeE
Confidence            344444444 34555566677789999999999999 6678999999999999998743       4466778 999999


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      .-++|+|.-.++|++++.|.+|.+|++.+++.+..+.              |+..|.++.|+-      +|.+|++.+.|
T Consensus       135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--------------hpd~i~S~sfn~------dGs~l~TtckD  194 (472)
T KOG0303|consen  135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--------------HPDMVYSMSFNR------DGSLLCTTCKD  194 (472)
T ss_pred             EEEeecccchhhHhhccCCceEEEEeccCCceeeecC--------------CCCeEEEEEecc------CCceeeeeccc
Confidence            9999999988899999999999999999999888876              679999999998      89999999999


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc-cEEEEEEeecCCCCcEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYL  308 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~~l  308 (375)
                      ..|+|||.++++.                                        +.+-.+|.+ .-..+.|-   .+|.++
T Consensus       195 KkvRv~dpr~~~~----------------------------------------v~e~~~heG~k~~Raifl---~~g~i~  231 (472)
T KOG0303|consen  195 KKVRVIDPRRGTV----------------------------------------VSEGVAHEGAKPARAIFL---ASGKIF  231 (472)
T ss_pred             ceeEEEcCCCCcE----------------------------------------eeecccccCCCcceeEEe---ccCcee
Confidence            9999999998632                                        333345543 23334455   688855


Q ss_pred             EEec---CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee-CCCeEEEEecC
Q 017194          309 ISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSIS  375 (375)
Q Consensus       309 ~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~~  375 (375)
                      -||-   .+..+-+||..+.+.       ........-+..|.-=-+.+ |.+.++.++ .|+.||.|.++
T Consensus       232 tTGfsr~seRq~aLwdp~nl~e-------P~~~~elDtSnGvl~PFyD~-dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEE-------PIALQELDTSNGVLLPFYDP-DTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             eeccccccccceeccCcccccC-------cceeEEeccCCceEEeeecC-CCCEEEEEecCCcceEEEEec
Confidence            5553   478899999888642       22112222334444333444 777777665 89999999863

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.3e-21  Score=166.43  Aligned_cols=308  Identities=13%  Similarity=0.146  Sum_probs=217.4

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc--C--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--K--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~--~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      .|.-.++|.+++|. ++++|+|..||.|.+|.--.  .  .....+.=|..+|.+++|+++|.+|++|+..+.+.+|.+.
T Consensus       203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            36677999999999 89999999999999997432  1  2255667789999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe----------cCcccceeEEEEeeCC
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR----------AGHSSICSSVQFIPWK  158 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~v~~~~~~~~~  158 (375)
                      +++ .+.+..+   .++|..+.++||+.+.+....|..|.+....+.....++.          ....+-.+.++++|.-
T Consensus       282 T~~-kqfLPRL---gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  282 TGK-KQFLPRL---GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             CCC-ccccccc---CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            887 4555555   6899999999999999999999999998876554443332          0124456788899955


Q ss_pred             CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec--------C-
Q 017194          159 PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--------D-  229 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--------d-  229 (375)
                      + .++-.+..|.|.+||+-+.+.+..+.....+.....  ......+++++.+-      .|.++++.-.        | 
T Consensus       358 ~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~--~n~~v~itav~~~~------~gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  358 N-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD--VNIQVGITAVARSR------FGSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             C-ceeecCCCceEEEEeccccceeeeEEEEeecccCCc--ceeEEeeeeehhhc------cceEEEEeeeeehhhhccCc
Confidence            5 688889999999999998887776654322211111  01223456666655      5888887642        1 


Q ss_pred             -CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee-eecCCCccEEEEEEeecCCCCc-
Q 017194          230 -GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY-SVGGHTAAASCVAFSMFGERGK-  306 (375)
Q Consensus       230 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~-  306 (375)
                       -.+++|-.....+                                    ...+.. ....|...+...++.+  +... 
T Consensus       429 e~~LKFW~~n~~~k------------------------------------t~~L~T~I~~PH~~~~vat~~~~--~~rs~  470 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSK------------------------------------TFILNTKINNPHGNAFVATIFLN--PTRSV  470 (792)
T ss_pred             eEEEEEEEEcCCcc------------------------------------eeEEEEEEecCCCceeEEEEEec--Ccccc
Confidence             2455565543211                                    112222 3346766666666653  3333 


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeecchhh-hhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          307 YLISGGNDKLVKVWDCSRFQGVQTSINND-LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       307 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ..++++.||.++||-+...+.+....... +...-.-|..+++.++|+. || .+++++.|+.|.+||.
T Consensus       471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDY  537 (792)
T ss_pred             eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CC-cEEEEecCCEEEEecC
Confidence            89999999999999996654432221111 1111112788999999998 98 5777778999999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=1.2e-21  Score=149.47  Aligned_cols=251  Identities=18%  Similarity=0.239  Sum_probs=181.2

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc---------ccccccc-CCCcceeEEEEc-------CCCCeEEEEe
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW---------RPLESYN-YNKEEINQIVCN-------PKSSFLACAD  122 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~  122 (375)
                      -...+.|+|||..|++-+.|..+.+|++...-..         .....+. .....|...+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3456899999999999999999999998531100         0000110 113456666664       6778899999


Q ss_pred             CCCcEEEEeCcCceeeeeEec-Ccccc---eeEEEEeeCCCcEEEEeecCCeEEEeeC-CCCCcceEEecCCCCCCCCCC
Q 017194          123 DGGDVKIIDIRQHCLYKSLRA-GHSSI---CSSVQFIPWKPWEVISGGLDSKLVMWDF-SKGRPNKIVNFGLPENNGNAG  197 (375)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~-~~~~~---v~~~~~~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~  197 (375)
                      .+.-|++||.-+++....++. .|...   ..+++|+|||. .|++ +....|++||+ +.|........-.      .+
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t~~------~~  202 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT------KG  202 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhhhh------cc
Confidence            999999999999988776652 24433   45899999998 4555 45789999999 5554322221110      00


Q ss_pred             cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                      .....+-+.+++|+|.     +.+.+++|+....+-||.-...                                     
T Consensus       203 k~gq~giisc~a~sP~-----~~~~~a~gsY~q~~giy~~~~~-------------------------------------  240 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPM-----DSKTLAVGSYGQRVGIYNDDGR-------------------------------------  240 (406)
T ss_pred             cccccceeeeeeccCC-----CCcceeeecccceeeeEecCCC-------------------------------------
Confidence            1112456889999997     7789999999888888876642                                     


Q ss_pred             ceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeeeecchhhhhhhhccccc-ceee--eeec
Q 017194          278 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNW--LCTT  353 (375)
Q Consensus       278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~  353 (375)
                         .++..+.+|.+.|+.+.|.   ++|+.|.+|+. |-.|..||++...        .++-.+..|.+ .-..  ....
T Consensus       241 ---~pl~llggh~gGvThL~~~---edGn~lfsGaRk~dkIl~WDiR~~~--------~pv~~L~rhv~~TNQRI~FDld  306 (406)
T KOG2919|consen  241 ---RPLQLLGGHGGGVTHLQWC---EDGNKLFSGARKDDKILCWDIRYSR--------DPVYALERHVGDTNQRILFDLD  306 (406)
T ss_pred             ---CceeeecccCCCeeeEEec---cCcCeecccccCCCeEEEEeehhcc--------chhhhhhhhccCccceEEEecC
Confidence               4556777999999999999   99999999986 7789999999875        55556666655 2222  3445


Q ss_pred             CCCCCcEEEeeCCCeEEEEecC
Q 017194          354 PTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       354 ~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      | ++++|++|+.||.|++||+.
T Consensus       307 ~-~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  307 P-KGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             C-CCceeeccCCCccEEEEecC
Confidence            6 89999999999999999974

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.7e-23  Score=168.16  Aligned_cols=258  Identities=11%  Similarity=0.174  Sum_probs=189.6

Q ss_pred             eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-----CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCc
Q 017194           52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-----PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD  126 (375)
Q Consensus        52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (375)
                      .++..|...|..++|.|....|++++.||.|.+|+++.     ....+++.++.+|.++|.|+++.+++..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            35567889999999999999999999999999999932     3446778889999999999999999999999999999


Q ss_pred             EEEEeCcC------c----eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194          127 VKIIDIRQ------H----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA  196 (375)
Q Consensus       127 i~iwd~~~------~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  196 (375)
                      |+.|++..      .    .....+. ||.+.|+.+++++... .|++++.||+++.|+.....+ ..+...  .     
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~--~-----  437 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEP--K-----  437 (577)
T ss_pred             eeeeccCCCCCcccccCcchhcccee-ccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc-cccCCc--c-----
Confidence            99996541      1    2234566 9999999999999887 699999999999999876665 222211  0     


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                          ......++.+...     +-...++...-+.-.++++........+....                          
T Consensus       438 ----e~g~Plsvd~~ss-----~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~--------------------------  482 (577)
T KOG0642|consen  438 ----EHGYPLSVDRTSS-----RPAHSLASFRFGYTSIDDMEVVSDLLIFESSA--------------------------  482 (577)
T ss_pred             ----ccCCcceEeeccc-----hhHhhhhhcccccccchhhhhhhheeeccccC--------------------------
Confidence                1233455555431     11222222222222333333221111111000                          


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCC
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE  356 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  356 (375)
                             ..-......+..+...   |.+.+.+++..|+.|+++|..++         +++.....|...++++++.| +
T Consensus       483 -------~~~~~~~~~in~vVs~---~~~~~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~-n  542 (577)
T KOG0642|consen  483 -------SPGPRRYPQINKVVSH---PTADITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDP-N  542 (577)
T ss_pred             -------CCcccccCccceEEec---CCCCeeEecccCCceeccccccc---------ccchheeeccceecceeecC-C
Confidence                   0000112456677777   88899999999999999999999         78888899999999999999 8


Q ss_pred             CCcEEEeeCCCeEEEEec
Q 017194          357 SENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       357 ~~~l~s~~~dg~v~iw~~  374 (375)
                      |-+|++++.|+.+++|++
T Consensus       543 g~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  543 GPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             CceEEeecCCceeehhhc
Confidence            999999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=7.4e-22  Score=163.82  Aligned_cols=158  Identities=11%  Similarity=0.170  Sum_probs=118.3

Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      ..|+.+.|.|-+...|++++.||.|++|.+..+.........      ......|...|+++.|+|.     -...|+++
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP------e~~lt~h~eKI~slRfHPL-----AadvLa~a  696 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP------EKILTIHGEKITSLRFHPL-----AADVLAVA  696 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc------ceeeecccceEEEEEecch-----hhhHhhhh
Confidence            368899999977668999999999999999765332211100      1111225789999999997     67899999


Q ss_pred             ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                      +.|-+|++||+.+.                                        .....+.+|.+.|..++||   |+|+
T Consensus       697 syd~Ti~lWDl~~~----------------------------------------~~~~~l~gHtdqIf~~AWS---pdGr  733 (1012)
T KOG1445|consen  697 SYDSTIELWDLANA----------------------------------------KLYSRLVGHTDQIFGIAWS---PDGR  733 (1012)
T ss_pred             hccceeeeeehhhh----------------------------------------hhhheeccCcCceeEEEEC---CCCc
Confidence            99999999999975                                        3334788999999999999   9999


Q ss_pred             EEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCC
Q 017194          307 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSK  367 (375)
Q Consensus       307 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg  367 (375)
                      .+|+.+.||+|++|+.++...        .+..-.+ ...+-..+.|.- ||++++..+.|.
T Consensus       734 ~~AtVcKDg~~rVy~Prs~e~--------pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk  786 (1012)
T KOG1445|consen  734 RIATVCKDGTLRVYEPRSREQ--------PVYEGKGPVGTRGARILWAC-DGRIVIVVGFDK  786 (1012)
T ss_pred             ceeeeecCceEEEeCCCCCCC--------ccccCCCCccCcceeEEEEe-cCcEEEEecccc
Confidence            999999999999999998752        2222222 112233445554 889988887664

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=1.4e-21  Score=166.93  Aligned_cols=251  Identities=19%  Similarity=0.213  Sum_probs=187.3

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEe----eecCccEEEEEEeCCCC--eEEEEcCCCeEEEE
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVT----DVGNGPVTSLCFKSGNE--DIIYVSSGKEVKSF   85 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~----~~~~~~v~~l~~~~~~~--~l~~~~~d~~i~iw   85 (375)
                      -..+|.|+.|+|.+..++|.|..+|.|.+||+..+..  ...+    ..|..++..+.|..+..  -+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            3578999999999899999999999999999987765  2222    35889999999976544  49999999999999


Q ss_pred             ECCCCCccc---cccccc------CCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCc--------eeeeeEecCccc
Q 017194           86 DVHMPASWR---PLESYN------YNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQH--------CLYKSLRAGHSS  147 (375)
Q Consensus        86 d~~~~~~~~---~~~~~~------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~  147 (375)
                      +++.-....   ......      .....++++.|.+. -..+++|+++|.|.--+-...        +....+. .|.+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g  399 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIG  399 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc-ccCc
Confidence            887422211   111111      11346889999984 466899999999887443321        1233445 6889


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      +|+++.++|-+..+|++++ |.++++|... ...++..+...             ...+++++|+|.     ....++++
T Consensus       400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~-------------~~~v~~vaWSpt-----rpavF~~~  460 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS-------------PDYVTDVAWSPT-----RPAVFATV  460 (555)
T ss_pred             ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhc-------------cceeeeeEEcCc-----CceEEEEE
Confidence            9999999999985566666 9999999988 66666666533             566999999996     66789999


Q ss_pred             ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                      ..+|.|.+||+....                                      ...+.+..-+....+.+.|+   +.|+
T Consensus       461 d~~G~l~iWDLl~~~--------------------------------------~~Pv~s~~~~~~~l~~~~~s---~~g~  499 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDD--------------------------------------EEPVLSQKVCSPALTRVRWS---PNGK  499 (555)
T ss_pred             cCCCceehhhhhccc--------------------------------------cCCcccccccccccceeecC---CCCc
Confidence            999999999998531                                      11222333335566778888   8899


Q ss_pred             EEEEecCCCeEEEEeCCCc
Q 017194          307 YLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       307 ~l~s~~~dg~i~iwd~~~~  325 (375)
                      .|+.|...|.+.+|++...
T Consensus       500 ~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  500 LLAVGDANGTTHILKLSES  518 (555)
T ss_pred             EEEEecCCCcEEEEEcCch
Confidence            9999999999999999754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.90  E-value=3.4e-21  Score=146.85  Aligned_cols=223  Identities=13%  Similarity=0.125  Sum_probs=174.3

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      .+.--..+|+|.+|++| ...+|.+..+..|.||.....+   ...++..|...|+.++|+|..+.|++++.|..-++|.
T Consensus         5 ~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            44445689999999999 8999999999999999987655   4778889999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee---eeEecCcccceeEEEEeeCCCcEEE
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      ...+..+++...+..++...+++.|+|.++.|++|+....|.||-++....-   +.++..+.+.|+++.|+|++- +++
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-Lla  162 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLA  162 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eec
Confidence            9767777777777777899999999999999999999999999988754321   112215678899999999987 899


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCC-----C-CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNG-----N-AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      .|+.|+.+++|..--.. +.+-..+.|=...     . .......+.++.+.|+|      +|..|+-.+.|..+.+-|.
T Consensus       163 aGs~D~k~rVfSayIK~-Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~------sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKG-VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP------SGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             ccccCcceeEEEEeeec-cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC------CCCEeeEecCCCceEEeec
Confidence            99999999999753110 0000000000000     0 00003467899999999      7999999999999999998


Q ss_pred             CCcc
Q 017194          238 ESEL  241 (375)
Q Consensus       238 ~~~~  241 (375)
                      ..+.
T Consensus       236 ~~p~  239 (361)
T KOG1523|consen  236 AGPS  239 (361)
T ss_pred             CCCc
Confidence            8654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=6.9e-22  Score=164.93  Aligned_cols=247  Identities=14%  Similarity=0.136  Sum_probs=191.2

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      .+..+.+|+||++.|+|++|+.+ |+.+|+|+.|..|.+|+.+-... ..+ .|++.|.|+.|+|-...|++++- ...-
T Consensus        42 dG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFg  117 (1081)
T KOG1538|consen   42 DGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSL-SDFG  117 (1081)
T ss_pred             CcccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcch-hhcc
Confidence            46678899999999999999999 99999999999999998653322 222 48999999999999988988874 4567


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe--cCcccceeEEEEeeCCC--
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKP--  159 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~--  159 (375)
                      +|..+..    .+...+. ...+.+++|..||++++.|-.+|+|.+-+- +++....+.  .+.+++|.+++|+|...  
T Consensus       118 lWS~~qK----~V~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G  191 (1081)
T KOG1538|consen  118 LWSPEQK----SVSKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEG  191 (1081)
T ss_pred             ccChhhh----hHHhhhh-heeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence            8987632    2222211 467899999999999999999999999864 444433333  25678999999999643  


Q ss_pred             --cEEEEeecCCeEEEeeCCCCCcce-EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194          160 --WEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       160 --~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                        ..+++.....++.+|.+. |+.+. .-.++              ....++.+.+      +|.++..|+.|+.+++|.
T Consensus       192 ~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~--------------FdP~CisYf~------NGEy~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  192 RNDILAVADWGQTLSFYQLS-GKQIGKDRALN--------------FDPCCISYFT------NGEYILLGGSDKQLSLFT  250 (1081)
T ss_pred             ccceEEEEeccceeEEEEec-ceeecccccCC--------------CCchhheecc------CCcEEEEccCCCceEEEe
Confidence              268888888899999876 44333 22222              3456788877      899999999999999997


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      -+.                                         ..+.++......|+.++..   |++++++.|..||+
T Consensus       251 R~G-----------------------------------------vrLGTvg~~D~WIWtV~~~---PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  251 RDG-----------------------------------------VRLGTVGEQDSWIWTVQAK---PNSQYVVVGCQDGT  286 (1081)
T ss_pred             ecC-----------------------------------------eEEeeccccceeEEEEEEc---cCCceEEEEEccCe
Confidence            663                                         2333555567899999999   99999999999999


Q ss_pred             EEEEeCCCc
Q 017194          317 VKVWDCSRF  325 (375)
Q Consensus       317 i~iwd~~~~  325 (375)
                      |..|++...
T Consensus       287 iACyNl~fS  295 (1081)
T KOG1538|consen  287 IACYNLIFS  295 (1081)
T ss_pred             eehhhhHHh
Confidence            999997643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=3.8e-21  Score=168.15  Aligned_cols=293  Identities=14%  Similarity=0.111  Sum_probs=203.8

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec---CccEEEEEEeC--CCCeEEEEcCCCeEEEEECCCC
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~l~~~~--~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      .+-..+.|+|- ...++++...-.|++||.+.++....+..+   ...|+.+.+-.  |...+++++.||.|+||+--..
T Consensus      1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCceeeecCC-CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            34566788888 678888887779999999999987777654   46788998865  4567999999999999974322


Q ss_pred             --CcccccccccC-------CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           91 --ASWRPLESYNY-------NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        91 --~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                        +..+.+....+       ..+.=.-+.|.....+|+++++-..|+|||.+....+..+..+....|+++.-+.....+
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence              22222222211       011113456777666777777788999999998888887764556677877655444348


Q ss_pred             EEEeecCCeEEEeeCCCCCc---ceEEecCCCCCCCCCCcccCCCc--eeEEeecCCccccCCCC-EEEEEecCCcEEEE
Q 017194          162 VISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAF--VHAIAIPDADMLDKTNK-ICVVAKGDGVVDVI  235 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~  235 (375)
                      ++.|..||.|++||.+...+   +...+.             |...  |..+.+.+      .|- .|++|+.+|.|++|
T Consensus      1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-------------h~~~~~Iv~~slq~------~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYRE-------------HNDVEPIVHLSLQR------QGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred             EEEeecCCceEEeecccCCccccceeecc-------------cCCcccceeEEeec------CCCcceeeeccCCeEEEE
Confidence            99999999999999986543   222221             2333  88888887      343 59999999999999


Q ss_pred             eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC---CccEEEEEEeecCCCCcEEEEec
Q 017194          236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH---TAAASCVAFSMFGERGKYLISGG  312 (375)
Q Consensus       236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~~~l~s~~  312 (375)
                      |++.....                                      -..+...|   .+..+++..+   +....+|+|+
T Consensus      1285 DlR~~~~e--------------------------------------~~~~iv~~~~yGs~lTal~VH---~hapiiAsGs 1323 (1387)
T KOG1517|consen 1285 DLRMSSKE--------------------------------------TFLTIVAHWEYGSALTALTVH---EHAPIIASGS 1323 (1387)
T ss_pred             ecccCccc--------------------------------------ccceeeeccccCccceeeeec---cCCCeeeecC
Confidence            99973110                                      00112222   2258899999   8889999999


Q ss_pred             CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          313 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       313 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      . +.|+||++...+...-....   .......+.+.+++|+| ---.||+|+.|..|.||..
T Consensus      1324 ~-q~ikIy~~~G~~l~~~k~n~---~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLNIIKYNP---GFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             c-ceEEEEecChhhhcccccCc---ccccCcCCCcceeeecc-hhHhhhhccCCceEEEeec
Confidence            8 99999999875321100000   01112345679999999 5567889999999999964

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=3.4e-19  Score=155.79  Aligned_cols=328  Identities=20%  Similarity=0.278  Sum_probs=231.8

Q ss_pred             CCeeeecCCC-ceeEEEE-ecCCCC-EEEEeCC-CCcEEEEeccc-CceeeEeeecCccEEEEEEeCCCCeEEEEcC-CC
Q 017194            7 KPRRLRGHKA-TATCCIA-SRDRPG-FVASSGE-DGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GK   80 (375)
Q Consensus         7 ~~~~l~~h~~-~i~~~~~-~~~~~~-~l~s~~~-d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~   80 (375)
                      ....+.++.. .+..+.+ .++ +. .++..+. |+.+.+|+... ......+..|...|..++|+|+++.+++++. ++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  178 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG  178 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCC
Confidence            3445555443 6777777 777 55 5555444 89999999998 7778888999999999999999998888885 99


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeee-eEecCcccceeEEEEeeCC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~  158 (375)
                      .+++|+...+   ..+..+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+. .|.... ...|+|++
T Consensus       179 ~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~  253 (466)
T COG2319         179 TIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDG  253 (466)
T ss_pred             ceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCC
Confidence            9999999863   34444555789999999999998 55555899999999988777777 577 787775 44899998


Q ss_pred             CcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          159 PWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      . ++++++.|+.+++||++.... ...+ ..            |...+.++.+.|      ++..+++++.|+.+.+||.
T Consensus       254 ~-~~~~~~~d~~~~~~~~~~~~~~~~~~-~~------------~~~~v~~~~~~~------~~~~~~~~~~d~~~~~~~~  313 (466)
T COG2319         254 S-LLASGSSDGTIRLWDLRSSSSLLRTL-SG------------HSSSVLSVAFSP------DGKLLASGSSDGTVRLWDL  313 (466)
T ss_pred             C-EEEEecCCCcEEEeeecCCCcEEEEE-ec------------CCccEEEEEECC------CCCEEEEeeCCCcEEEEEc
Confidence            6 788999999999999987665 3333 23            467899999998      6888888888889999998


Q ss_pred             CCcceeeccc-ccCCCCCCceeecccccceeeeeeee----cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE-e
Q 017194          238 ESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-G  311 (375)
Q Consensus       238 ~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s-~  311 (375)
                      .+........ .........+.+.+++..+...+..+    .+............. ...+..+.++   + ...+.. +
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~-~~~~~~~~  388 (466)
T COG2319         314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFS---P-DGRVVSSG  388 (466)
T ss_pred             CCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEEC---C-CCCEEEEe
Confidence            8766555443 12222355555533323333322111    111111111111111 1227888887   6 433443 7


Q ss_pred             cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ..++.+.+|+......         ......+...+....+.+ ++..+++++.++.+++|++.
T Consensus       389 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         389 STDGTVRLWDLSTGSL---------LRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             cCCCceEEEecccCee---------eeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEecc
Confidence            8899999999999743         222222227788888888 88889999999999999863

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=2.2e-20  Score=159.75  Aligned_cols=276  Identities=15%  Similarity=0.106  Sum_probs=192.1

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCCCCc--ccccc-cccCCCcceeEEEEcC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPAS--WRPLE-SYNYNKEEINQIVCNP  113 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~v~~~~~~~  113 (375)
                      +.+.+|++.........-.-...|.++.|+|.. .+++.|+.+|+|.+||++.+..  ...+. ....|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            479999998763333333357899999999854 5677777899999999987654  22222 2235788999999987


Q ss_pred             CCCe--EEEEeCCCcEEEEeCcCceee-e-----eEe-----cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194          114 KSSF--LACADDGGDVKIIDIRQHCLY-K-----SLR-----AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR  180 (375)
Q Consensus       114 ~~~~--l~~~~~dg~i~iwd~~~~~~~-~-----~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  180 (375)
                      +..-  +++++.||.|..|+++.-... .     ...     ......+++++|.+..++.|+.|+++|.|.--+....+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            5444  999999999999998743221 0     000     01134689999999988899999999998874433222


Q ss_pred             cce--EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194          181 PNK--IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS  258 (375)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  258 (375)
                      .-.  .++       .......|.+.|+++.++|.      +..++..+.|..++||......                 
T Consensus       382 ~~~~~~~~-------~~~~~~~h~g~v~~v~~nPF------~~k~fls~gDW~vriWs~~~~~-----------------  431 (555)
T KOG1587|consen  382 PAPEVSYK-------GHSTFITHIGPVYAVSRNPF------YPKNFLSVGDWTVRIWSEDVIA-----------------  431 (555)
T ss_pred             cccccccc-------ccccccccCcceEeeecCCC------ccceeeeeccceeEeccccCCC-----------------
Confidence            111  111       11122336789999999995      4444444449999999987311                 


Q ss_pred             ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh
Q 017194          259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI  338 (375)
Q Consensus       259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  338 (375)
                                            .++..+..+...+++++|||..  -..++++..||.|.+||+.....       ..+.
T Consensus       432 ----------------------~Pl~~~~~~~~~v~~vaWSptr--pavF~~~d~~G~l~iWDLl~~~~-------~Pv~  480 (555)
T KOG1587|consen  432 ----------------------SPLLSLDSSPDYVTDVAWSPTR--PAVFATVDGDGNLDIWDLLQDDE-------EPVL  480 (555)
T ss_pred             ----------------------CcchhhhhccceeeeeEEcCcC--ceEEEEEcCCCceehhhhhcccc-------CCcc
Confidence                                  2334555667779999999633  35888999999999999987643       3333


Q ss_pred             hhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          339 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       339 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ...-+....+.+.|++ .|+.|+.|+..|.+.+|+++
T Consensus       481 s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  481 SQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             cccccccccceeecCC-CCcEEEEecCCCcEEEEEcC
Confidence            4434455566666666 89999999999999999973

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.2e-21  Score=149.05  Aligned_cols=273  Identities=15%  Similarity=0.234  Sum_probs=188.0

Q ss_pred             cCCCCCeeeecCCCceeEEEEecC-CCCEEEEeCCCCcEEEEecccCceeeEee--ecC-ccEEEEEEeCCCCeEEEEcC
Q 017194            3 DAEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTD--VGN-GPVTSLCFKSGNEDIIYVSS   78 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~-~~v~~l~~~~~~~~l~~~~~   78 (375)
                      .+++.+..+++|...++.+.|..+ .+..+.+|+.||+|++||+++......+.  .+. .+..+++.+..++.+++|..
T Consensus        58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen   58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence            357788899999999999999774 46789999999999999999876644443  343 56777777767777777653


Q ss_pred             ----CCeEEEEECCCCCccccccc-ccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCc----eeeeeEecCcccc
Q 017194           79 ----GKEVKSFDVHMPASWRPLES-YNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQH----CLYKSLRAGHSSI  148 (375)
Q Consensus        79 ----d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~  148 (375)
                          +-.+.+||++..+.  .+.. ...|...|++++|+|. .++|++|+.||.|.+||++..    .++.++.  |...
T Consensus       138 ~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sS  213 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSS  213 (376)
T ss_pred             cccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--ccce
Confidence                45899999997543  1322 3468899999999994 578999999999999999754    2344554  7788


Q ss_pred             eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCC-CCccc-CCCceeEEeecCCccccCCCCEEEEE
Q 017194          149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN-AGQCY-NPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      |-.+.|..++-..+.+-+...+..+|+++.+.+...+..+  ..... ..... ....|..  .+|.     +...++.+
T Consensus       214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~--~~~~~d~r~~~~~dY~I~~--~~~~-----~~~~~~l~  284 (376)
T KOG1188|consen  214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP--DVSADDLRKEDNCDYVINE--HSPG-----DKDTCALA  284 (376)
T ss_pred             eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc--cchhhhHHhhhhhhheeec--ccCC-----CcceEEEe
Confidence            9999999888435888899999999999998865554422  11100 00000 0011111  1232     45566655


Q ss_pred             ec-CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCC
Q 017194          227 KG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGER  304 (375)
Q Consensus       227 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~  304 (375)
                      +. -|...++-+.....                                  ....+....+.+ |..-|+++.|.   ..
T Consensus       285 g~~~n~~~~~~~~~~~s----------------------------------~~~~~~~a~l~g~~~eiVR~i~~~---~~  327 (376)
T KOG1188|consen  285 GTDSNKGTIFPLVDTSS----------------------------------GSLLTEPAILQGGHEEIVRDILFD---VK  327 (376)
T ss_pred             ccccCceeEEEeeeccc----------------------------------ccccCccccccCCcHHHHHHHhhh---cc
Confidence            54 55555554442100                                  111223334555 67778888887   77


Q ss_pred             CcEEEEecCCCeEEEEeCCCc
Q 017194          305 GKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       305 ~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      +.++.||++||.+.+|..+..
T Consensus       328 ~~~l~TGGEDG~l~~Wk~~da  348 (376)
T KOG1188|consen  328 NDVLYTGGEDGLLQAWKVEDA  348 (376)
T ss_pred             cceeeccCCCceEEEEecCCc
Confidence            889999999999999996543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=1.5e-20  Score=141.47  Aligned_cols=257  Identities=13%  Similarity=0.153  Sum_probs=185.5

Q ss_pred             eeEeeecCccEEEEEEeC--C-CCeEEEEcC----CCeEEEEECCCCCc-ccccccccCCCcceeEEEEcCCCC-----e
Q 017194           51 QLVTDVGNGPVTSLCFKS--G-NEDIIYVSS----GKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSS-----F  117 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~--~-~~~l~~~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-----~  117 (375)
                      +..+.. .-++.++.|+.  + ..+|+.|+.    .+.|.|..+..... ...... ..|..+++.+.|.|+..     +
T Consensus        38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdl  115 (364)
T KOG0290|consen   38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDL  115 (364)
T ss_pred             EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcch
Confidence            444443 45788899973  2 346777764    35777766653211 111122 35788999999999763     3


Q ss_pred             EEEEeCCCcEEEEeCcCc--ee--eeeEe----cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEec
Q 017194          118 LACADDGGDVKIIDIRQH--CL--YKSLR----AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNF  187 (375)
Q Consensus       118 l~~~~~dg~i~iwd~~~~--~~--~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~  187 (375)
                      ||+.+  -.+++|.+...  +.  ...+.    ..+..+++++.|+.-.++++.+++-|-+..+||+.++..  +++.-.
T Consensus       116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI  193 (364)
T KOG0290|consen  116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI  193 (364)
T ss_pred             hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence            55543  47999998732  11  11111    145679999999988887899999999999999998743  333333


Q ss_pred             CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                      .            |...|..++|...     .-+.+++.+.||.+++||++..+..                        
T Consensus       194 A------------HDKEV~DIaf~~~-----s~~~FASvgaDGSvRmFDLR~leHS------------------------  232 (364)
T KOG0290|consen  194 A------------HDKEVYDIAFLKG-----SRDVFASVGADGSVRMFDLRSLEHS------------------------  232 (364)
T ss_pred             e------------cCcceeEEEeccC-----ccceEEEecCCCcEEEEEecccccc------------------------
Confidence            3            7889999999873     4578999999999999999974221                        


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC-CeEEEEeCCCceeeeecchhhhhhhhcccccc
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  346 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  346 (375)
                                   ..+++-.....+...++|++  .|-+++|+-..| ..|.|-|++...        ..+..+.+|.+.
T Consensus       233 -------------TIIYE~p~~~~pLlRLswnk--qDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~  289 (364)
T KOG0290|consen  233 -------------TIIYEDPSPSTPLLRLSWNK--QDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQAS  289 (364)
T ss_pred             -------------eEEecCCCCCCcceeeccCc--CCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCccc
Confidence                         22333333356788899985  456788887665 469999999875        567789999999


Q ss_pred             eeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          347 VNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       347 v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |+.++|.|..+..|++++.|..+.+||+.
T Consensus       290 VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  290 VNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             ccceEecCCCCceeeecCCcceEEEEecc
Confidence            99999999999999999999999999984

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.88  E-value=4.6e-19  Score=137.92  Aligned_cols=199  Identities=11%  Similarity=0.156  Sum_probs=162.7

Q ss_pred             ceeEEEEecCCCCEEEEeCCC--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           17 TATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      .|.-+-|+..   ++|..+.+  +.+++.++.++..+..+.. ..+|.++.++.  ++|+++-. ..|+|||+++.+.+.
T Consensus        48 ~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLh  120 (391)
T KOG2110|consen   48 SIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLH  120 (391)
T ss_pred             EEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEc-ccEEEEecccceeeh
Confidence            3555666643   55544443  4599999988887777763 67889999874  45665554 449999999988888


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe-E
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-L  171 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i  171 (375)
                      .+.....+...+..+.+++.+.+++.-+  ..|.|.+||..+-+.+..+. .|.+.+-+++|+++|. +||++++.|+ |
T Consensus       121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~-llATASeKGTVI  198 (391)
T KOG2110|consen  121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGT-LLATASEKGTVI  198 (391)
T ss_pred             hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCC-EEEEeccCceEE
Confidence            8888777777888888888888988643  57899999999999999999 9999999999999999 8999999997 6


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      |++.+.+|+.+.++.-+.           .+..|.+++|+|      ++++|++.+..++|++|.+....
T Consensus       199 RVf~v~~G~kl~eFRRG~-----------~~~~IySL~Fs~------ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  199 RVFSVPEGQKLYEFRRGT-----------YPVSIYSLSFSP------DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEcCCccEeeeeeCCc-----------eeeEEEEEEECC------CCCeEEEecCCCeEEEEEecccc
Confidence            899999999999998652           256799999999      89999999999999999998643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.1e-19  Score=143.63  Aligned_cols=201  Identities=18%  Similarity=0.177  Sum_probs=151.2

Q ss_pred             eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194          107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  186 (375)
                      ..++|+++|..+++++.||++|+|+..+...+.... .|...|.++.|+|||+ +|++-+.| ..++|+.+++..+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcC
Confidence            679999999999999999999999977777766666 7999999999999999 89999999 89999999997666554


Q ss_pred             cCCCCCCCCCCcccCCCceeEEeecCCccccCCC-----CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194          187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-----KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~  261 (375)
                      ...           .+.....+.|+.      ++     .+++....-+.|+.||+......                  
T Consensus       225 ~~~-----------k~~~~~~cRF~~------d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------------------  269 (398)
T KOG0771|consen  225 PFS-----------KDEMFSSCRFSV------DNAQETLRLAASQFPGGGVRLCDISLWSGS------------------  269 (398)
T ss_pred             Ccc-----------cchhhhhceecc------cCCCceEEEEEecCCCCceeEEEeeeeccc------------------
Confidence            110           233445566665      23     22333334567777777642110                  


Q ss_pred             cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  341 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  341 (375)
                                      ..++....+ .....|.+++.+   ++|+++|.|+.||.|.|++..+.+.        ......
T Consensus       270 ----------------~~l~~~~~~-~~~~siSsl~VS---~dGkf~AlGT~dGsVai~~~~~lq~--------~~~vk~  321 (398)
T KOG0771|consen  270 ----------------NFLRLRKKI-KRFKSISSLAVS---DDGKFLALGTMDGSVAIYDAKSLQR--------LQYVKE  321 (398)
T ss_pred             ----------------cccchhhhh-hccCcceeEEEc---CCCcEEEEeccCCcEEEEEeceeee--------eEeehh
Confidence                            001111122 224579999999   9999999999999999999999853        333456


Q ss_pred             ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          342 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       342 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .|...|+.+.|+| |.+++++.+.|....+..+
T Consensus       322 aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  322 AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             hheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence            7999999999999 9999999999988877654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.3e-18  Score=148.31  Aligned_cols=341  Identities=15%  Similarity=0.123  Sum_probs=222.0

Q ss_pred             CcCCCCCeeeecCCCceeEEEEecCCC--CEEEEeCCCCcEEEEecccCceeeEeeecCccEEE----------------
Q 017194            2 TDAEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTS----------------   63 (375)
Q Consensus         2 ~~~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~----------------   63 (375)
                      ..|+.+++.|.+|..++..+.+.|...  .++.+++.||.|++||...++.++++..+ .++.+                
T Consensus        44 ~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~  122 (792)
T KOG1963|consen   44 TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALVYKPAQADISANVYV  122 (792)
T ss_pred             cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEEechhHhCccceeEe
Confidence            357788899999999999999988744  46779999999999999988776665432 11111                


Q ss_pred             -------------------------------------------EEEeCCCCeEEEEcCCCeEEEEECCCCCcc-cccccc
Q 017194           64 -------------------------------------------LCFKSGNEDIIYVSSGKEVKSFDVHMPASW-RPLESY   99 (375)
Q Consensus        64 -------------------------------------------l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~   99 (375)
                                                                 +.+++.|.+.. ...+..+.+|...+.... .....-
T Consensus       123 s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~  201 (792)
T KOG1963|consen  123 SVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG-IVHMCKIHIYFVPKHTKHTSSRDIT  201 (792)
T ss_pred             ecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE-EEEeeeEEEEEecccceeeccchhh
Confidence                                                       22222222111 111334556665543211 111112


Q ss_pred             cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC----ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194          100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD  175 (375)
Q Consensus       100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd  175 (375)
                      ..|.-.+++.+++|.++++++|..||.|.+|.--.    ......+. -|..+|++++|+++|. .|++|+..|.+.+|.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCc-eEeecccceEEEEEe
Confidence            23566689999999999999999999999997432    12345666 7889999999999999 699999999999999


Q ss_pred             CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc------
Q 017194          176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST------  249 (375)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------  249 (375)
                      +.+++...-.++              ..+|..+.++|      ++.+.++...|+.|.+....+..........      
T Consensus       280 ~~T~~kqfLPRL--------------gs~I~~i~vS~------ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  280 LETGKKQFLPRL--------------GSPILHIVVSP------DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             ecCCCccccccc--------------CCeeEEEEEcC------CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence            999884433333              37899999999      8999999999999999988665443322211      


Q ss_pred             ----CCCCCCceeecccccceee------eeeeecCCcceeEeeeee--c------CCCccEEEEEEeecCCCCcEEEEe
Q 017194          250 ----TKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSV--G------GHTAAASCVAFSMFGERGKYLISG  311 (375)
Q Consensus       250 ----~~~~~~~~~~s~~g~~~~~------~~~~~~~~~~~~~~~~~~--~------~~~~~v~~~~~s~~~~~~~~l~s~  311 (375)
                          .....+.+++.|.-+.++.      +..++.........+...  .      .+...+++++.+   ..|.+++|.
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~---~~gs~maT~  416 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS---RFGSWMATL  416 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh---ccceEEEEe
Confidence                1233445566664444433      112222222222111111  0      123457777877   679999986


Q ss_pred             cC--------C--CeEEEEeCCCceeeeecchhhhh-hhhcccccceeeeeecCCC-CCcEEEeeCCCeEEEEec
Q 017194          312 GN--------D--KLVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWLCTTPTE-SENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       312 ~~--------d--g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~v~iw~~  374 (375)
                      -.        |  -.+++|-........     .+. .....|...+...++.++. ....++++.||.++||-+
T Consensus       417 E~~~d~~~~~~~e~~LKFW~~n~~~kt~-----~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~  486 (792)
T KOG1963|consen  417 EARIDKFNFFDGEVSLKFWQYNPNSKTF-----ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF  486 (792)
T ss_pred             eeeehhhhccCceEEEEEEEEcCCccee-----EEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence            42        2  357889776543210     111 1223577666666665533 338999999999999976

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.86  E-value=6.5e-20  Score=149.36  Aligned_cols=263  Identities=13%  Similarity=0.098  Sum_probs=178.3

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEE-eC-------CCCeEEEEcCCCeEEE
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF-KS-------GNEDIIYVSSGKEVKS   84 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~-~~-------~~~~l~~~~~d~~i~i   84 (375)
                      -|...|.|+.|+.. ...+.+ +.|..+.+|.--+......+.....-|....+ -+       ....++.++.||.+.+
T Consensus        12 r~~e~vc~v~w~~~-eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSN-EEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeeccccc-ceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            47778889999986 444444 45556666654433333333222222222111 11       2346888899999988


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      .+-.    .+.-.....|.+.+.+-.|+|||.-|+++++||.|++|. ++|-...++. ....+|.|++|.|+.+..+.+
T Consensus        90 l~k~----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   90 LNKS----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             eccc----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCceEEe
Confidence            8744    234455667899999999999999999999999999998 4665555555 567899999999999865555


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      .+  +.+.+=.+.....+-.++.             |.+-|.++.|++      ..+++++|++|-..++||...     
T Consensus       164 ~g--~h~~IKpL~~n~k~i~WkA-------------HDGiiL~~~W~~------~s~lI~sgGED~kfKvWD~~G-----  217 (737)
T KOG1524|consen  164 QG--GHISIKPLAANSKIIRWRA-------------HDGLVLSLSWST------QSNIIASGGEDFRFKIWDAQG-----  217 (737)
T ss_pred             cC--CeEEEeecccccceeEEec-------------cCcEEEEeecCc------cccceeecCCceeEEeecccC-----
Confidence            44  4666666665555556663             578999999999      699999999999999999875     


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                                          +.++.-..|..+|++++|.   |+ +.++.++. +++++=   .
T Consensus       218 ------------------------------------~~Lf~S~~~ey~ITSva~n---pd-~~~~v~S~-nt~R~~---~  253 (737)
T KOG1524|consen  218 ------------------------------------ANLFTSAAEEYAITSVAFN---PE-KDYLLWSY-NTARFS---S  253 (737)
T ss_pred             ------------------------------------cccccCChhccceeeeeec---cc-cceeeeee-eeeeec---C
Confidence                                                3344555667777777777   66 45555443 233311   1


Q ss_pred             ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194          325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV  371 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i  371 (375)
                                       ...+.|..++|++ ||..++.|...|.|.+
T Consensus       254 -----------------p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  254 -----------------PRVGSIFNLSWSA-DGTQATCGTSTGQLIV  282 (737)
T ss_pred             -----------------CCccceEEEEEcC-CCceeeccccCceEEE
Confidence                             1235667777777 7777777766666543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=8.9e-20  Score=143.40  Aligned_cols=257  Identities=15%  Similarity=0.153  Sum_probs=180.6

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc--------c--------CceeeEeeecCccEEEEEEeCCCC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--------S--------KDVQLVTDVGNGPVTSLCFKSGNE   71 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~--------~--------~~~~~~~~~~~~~v~~l~~~~~~~   71 (375)
                      +..|..|+..|+++.|+|+ |++||+|+.+|.|.+|...        +        ....+.+.+|...|..++|+|++.
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN  136 (434)
T ss_pred             eecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence            4567889999999999999 9999999999999999866        2        122556778999999999999999


Q ss_pred             eEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe---------
Q 017194           72 DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR---------  142 (375)
Q Consensus        72 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------  142 (375)
                      ++++++-|+.+++||+..+   .....+..|...+..++|.|-++++++-+.|...+.+++...+.+....         
T Consensus       137 ~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~  213 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF  213 (434)
T ss_pred             eeeeeeccceEEEEEeccc---eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence            9999999999999999975   4556667789999999999999999999888877777665332221110         


Q ss_pred             ---------cCcc----cceeEEEEeeCCCcEEEEeec----CC-----eEEEeeCCCC-CcceEEecCCCCCCCCCCcc
Q 017194          143 ---------AGHS----SICSSVQFIPWKPWEVISGGL----DS-----KLVMWDFSKG-RPNKIVNFGLPENNGNAGQC  199 (375)
Q Consensus       143 ---------~~~~----~~v~~~~~~~~~~~~l~~~~~----d~-----~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~  199 (375)
                               .-|.    .....++|+|+|. ++++...    .+     ..++|+-... ++...+..            
T Consensus       214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~------------  280 (434)
T KOG1009|consen  214 NEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS------------  280 (434)
T ss_pred             CCCCcceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeeccccccCceeecCC------------
Confidence                     0011    2345678899998 6776431    22     2234432211 12222211            


Q ss_pred             cCCCceeEEeecCCccc------------cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          200 YNPAFVHAIAIPDADML------------DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       200 ~~~~~v~~~~~~~~~~~------------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                       .......+.++|..+.            =|-+..+++++.+ .+.+||..+..                          
T Consensus       281 -~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~--------------------------  332 (434)
T KOG1009|consen  281 -PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLE--------------------------  332 (434)
T ss_pred             -CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccccc--------------------------
Confidence             1234555566554210            1234456666654 89999998632                          


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                   .+...-.-|-..++.++|+   +||.+|+..+.||...+-..+..
T Consensus       333 -------------P~~~v~nihy~~iTDiaws---~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  333 -------------PLAVVDNIHYSAITDIAWS---DDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             -------------ceEEEeeeeeeeecceeec---CCCcEEEEeccCCceEEEEEcch
Confidence                         1112333467889999999   99999999999998887776665

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.2e-20  Score=145.56  Aligned_cols=259  Identities=11%  Similarity=0.070  Sum_probs=188.2

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC---CCccccccccc-CCCcceeEEEEcCCCCeEEEEeCCCc
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PASWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGD  126 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (375)
                      .+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++.   .+..+++.... .|...|.+++|...++++++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            344567999999999999999999999999999999863   12223444332 35589999999999999999999999


Q ss_pred             EEEEeCcCceeeeeEecCccc---ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCC
Q 017194          127 VKIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNP  202 (375)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  202 (375)
                      |...|+++.+.+..+.  |..   .|..+..+|..+ .|++.+.++.|.+||.+... ....+-...           .+
T Consensus       129 VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-----------~~  194 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPAN-----------SG  194 (609)
T ss_pred             eEeeecccceeeeeec--ccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecC-----------CC
Confidence            9999999999888876  444   899999999977 89999999999999998765 332222110           24


Q ss_pred             CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194          203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  282 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~  282 (375)
                      ...+++.|+|.     ...+|++++..+-+-+||.+..........                                 .
T Consensus       195 ~~F~t~~F~P~-----~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~---------------------------------~  236 (609)
T KOG4227|consen  195 KNFYTAEFHPE-----TPALILVNSETGGPNVFDRRMQARPVYQRS---------------------------------M  236 (609)
T ss_pred             ccceeeeecCC-----CceeEEeccccCCCCceeeccccchHHhhh---------------------------------c
Confidence            56788999997     788999999999999999997543321110                                 0


Q ss_pred             eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc-------ccceeeeeecCC
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-------NKKVNWLCTTPT  355 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~  355 (375)
                      ...+......-.++.|+   |+|..|++--....-.+||+.+..         +......|       ...+.+++|.- 
T Consensus       237 ~~~L~~~~~~~M~~~~~---~~G~Q~msiRR~~~P~~~D~~S~R---------~~V~k~D~N~~GY~N~~T~KS~~F~~-  303 (609)
T KOG4227|consen  237 FKGLPQENTEWMGSLWS---PSGNQFMSIRRGKCPLYFDFISQR---------CFVLKSDHNPNGYCNIKTIKSMTFID-  303 (609)
T ss_pred             cccCcccchhhhheeeC---CCCCeehhhhccCCCEEeeeeccc---------ceeEeccCCCCcceeeeeeeeeeeec-
Confidence            01122212233556788   788877776666666677777752         22122222       23466777754 


Q ss_pred             CCCcEEEeeCCCeEEEEecC
Q 017194          356 ESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       356 ~~~~l~s~~~dg~v~iw~~~  375 (375)
                      | ..+++|+.+=.|++|.++
T Consensus       304 D-~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  304 D-YTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             c-eeeeccCcccceEEEecC
Confidence            4 459999999999999875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.85  E-value=1.6e-17  Score=138.51  Aligned_cols=310  Identities=15%  Similarity=0.180  Sum_probs=193.8

Q ss_pred             CEE-EEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194           29 GFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN  107 (375)
Q Consensus        29 ~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  107 (375)
                      +++ ++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+....+..    .....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~   81 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPR   81 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcc
Confidence            344 4556689999999999999999987555545678999999999999999999999998776666655    45678


Q ss_pred             EEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecC------cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194          108 QIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAG------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR  180 (375)
Q Consensus       108 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  180 (375)
                      .+++++||++++++. .++.+.++|.++.+.++.+..+      ....+.++..+|..+.++++.-+.+.|.+.|....+
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK  161 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred             eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence            899999999988776 6899999999999998887621      234677888888887434444556899999988766


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCc---
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGS---  256 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---  256 (375)
                      .+..-...            .........|+|      ++++++++ ..++.|-++|..+.+..........+....   
T Consensus       162 ~~~~~~i~------------~g~~~~D~~~dp------dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~  223 (369)
T PF02239_consen  162 NLKVTTIK------------VGRFPHDGGFDP------DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN  223 (369)
T ss_dssp             CEEEEEEE--------------TTEEEEEE-T------TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred             ccceeeec------------ccccccccccCc------ccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence            55432222            235677889988      78887665 567799999999876655432211111111   


Q ss_pred             -------eee--ccccccee-eeeeee--cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe----cCCCeEEEE
Q 017194          257 -------QST--SKVNIRDA-EMEILD--QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG----GNDKLVKVW  320 (375)
Q Consensus       257 -------~~~--s~~g~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~----~~dg~i~iw  320 (375)
                             ..+  ...+.... ..+.-.  ......++.+.++.....+ .-+..+   |+++++.+.    ...+.|.++
T Consensus       224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th---P~s~~vwvd~~~~~~~~~v~vi  299 (369)
T PF02239_consen  224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH---PDSRYVWVDTFLNPDADTVQVI  299 (369)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-----TT-SEEEEE-TT-SSHT-EEEE
T ss_pred             ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC---CCCccEEeeccCCCCCceEEEE
Confidence                   112  22222221 112111  1234556667777766666 667778   999999987    456899999


Q ss_pred             eCCCceeeeecchhhhhhhhc-ccccceeeeeecCCCCCcEEEee--CCCeEEEEec
Q 017194          321 DCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLVVCD--TSKVVKVYSI  374 (375)
Q Consensus       321 d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~iw~~  374 (375)
                      |.++.+.         ...+. +-...+..+.|++ +|+.+..+.  .++.|.+||-
T Consensus       300 D~~tl~~---------~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  300 DKKTLKV---------VKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             ECCGTEE---------EE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred             ECcCcce---------eEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence            9999842         22222 2223588999999 888665544  3447999984

...

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.4e-20  Score=145.98  Aligned_cols=198  Identities=15%  Similarity=0.173  Sum_probs=158.0

Q ss_pred             eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194           19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      .+++|+++ +..|++++.||++|||++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            67899999 8999999999999999998888888888899999999999999999999999 999999998855444443


Q ss_pred             ccCCCcceeEEEEcCCC---Ce--EEEEeCCCcEEEEeCcCce---eee--eEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           99 YNYNKEEINQIVCNPKS---SF--LACADDGGDVKIIDIRQHC---LYK--SLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~~~---~~--l~~~~~dg~i~iwd~~~~~---~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      .. .+.....+.|+.++   .+  ++....-+.|+.||+...+   .++  +.. .-...|.+++.+++|+ +++.|+.|
T Consensus       226 ~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGk-f~AlGT~d  302 (398)
T KOG0771|consen  226 FS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGK-FLALGTMD  302 (398)
T ss_pred             cc-cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCc-EEEEeccC
Confidence            22 24567778888876   33  3333345667777664221   111  111 1234799999999999 89999999


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      |.|.+++..+.+.++.++-.            |...|+.+.|+|      +.+.++.-+.+....+..+.-
T Consensus       303 GsVai~~~~~lq~~~~vk~a------------H~~~VT~ltF~P------dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEA------------HLGFVTGLTFSP------DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeehhh------------heeeeeeEEEcC------CcCcccccccCCceeEEEEee
Confidence            99999999988888877755            778999999999      799999999998888887764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.4e-18  Score=125.22  Aligned_cols=200  Identities=11%  Similarity=0.205  Sum_probs=152.1

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce------ee--Eeeec-----CccEEEEEEeCCCCeE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QL--VTDVG-----NGPVTSLCFKSGNEDI   73 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------~~--~~~~~-----~~~v~~l~~~~~~~~l   73 (375)
                      ++...++|+++|+.++|..   .+|++|+. |.|+=|..+....      +.  ....|     --.|+++-..|..+-+
T Consensus        54 ~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi  129 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI  129 (325)
T ss_pred             ceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence            3455689999999999983   47777775 9999998764432      11  11112     2468899999988888


Q ss_pred             EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec--------Cc
Q 017194           74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--------GH  145 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~  145 (375)
                      +.++.|+.++-||+++++   ....+++|...|.++.--.....+++|++||++++||.++++.++.+..        .|
T Consensus       130 ~~AgGD~~~y~~dlE~G~---i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~  206 (325)
T KOG0649|consen  130 LFAGGDGVIYQVDLEDGR---IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD  206 (325)
T ss_pred             EEecCCeEEEEEEecCCE---EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence            888899999999999864   4456778999999999866666899999999999999999988877641        11


Q ss_pred             -ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194          146 -SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       146 -~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                       ...|.+++-+.  . -+++ +....+.+|.+++.++...+.+.              ..+..+.|        ..+.++
T Consensus       207 ~g~wigala~~e--d-WlvC-GgGp~lslwhLrsse~t~vfpip--------------a~v~~v~F--------~~d~vl  260 (325)
T KOG0649|consen  207 WGKWIGALAVNE--D-WLVC-GGGPKLSLWHLRSSESTCVFPIP--------------ARVHLVDF--------VDDCVL  260 (325)
T ss_pred             cCceeEEEeccC--c-eEEe-cCCCceeEEeccCCCceEEEecc--------------cceeEeee--------ecceEE
Confidence             22455555443  3 3444 44568999999999999999855              78889999        467788


Q ss_pred             EEecCCcEEEEeCCC
Q 017194          225 VAKGDGVVDVINIES  239 (375)
Q Consensus       225 ~~~~dg~i~i~d~~~  239 (375)
                      +++..+.+.-|.+..
T Consensus       261 ~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  261 IGGEGNHVQSYTLNG  275 (325)
T ss_pred             Eeccccceeeeeecc
Confidence            888888899998875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=1.5e-17  Score=139.18  Aligned_cols=260  Identities=11%  Similarity=0.142  Sum_probs=165.3

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEe-CCCCcEEEEeccc-Cce--eeEeeecCccEEEEEEeCCCCeEEEEcC-CCe
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASS-GEDGCICWFDLRS-KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKE   81 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~-~~d~~i~iw~~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~   81 (375)
                      .++++. +.+....++++|+ +++|+++ ..++.|.+|++.. ++.  ..... .......++|+|+++++++++. ++.
T Consensus        27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~  103 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC  103 (330)
T ss_pred             eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence            444554 3456778999998 7877655 4578899999873 332  22222 2345678999999998888765 789


Q ss_pred             EEEEECCCCC-cccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeee-----eEecCcccceeEEEE
Q 017194           82 VKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYK-----SLRAGHSSICSSVQF  154 (375)
Q Consensus        82 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~  154 (375)
                      |.+|++++.. ....+....+ ......++++|+++++++++ .++.|.+||+.+...+.     ............++|
T Consensus       104 v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~  182 (330)
T PRK11028        104 VSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF  182 (330)
T ss_pred             EEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence            9999997432 2222222222 24567788999999886555 56899999997633221     111012344678999


Q ss_pred             eeCCCcEEEEee-cCCeEEEeeCCC--CCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-
Q 017194          155 IPWKPWEVISGG-LDSKLVMWDFSK--GRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-  228 (375)
Q Consensus       155 ~~~~~~~l~~~~-~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-  228 (375)
                      +|+++ +++++. .+++|.+||++.  ++.  +..+... |..      ...+.....+.++|      ++++++++.. 
T Consensus       183 ~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-p~~------~~~~~~~~~i~~~p------dg~~lyv~~~~  248 (330)
T PRK11028        183 HPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-PAD------FSDTRWAADIHITP------DGRHLYACDRT  248 (330)
T ss_pred             CCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-CCc------CCCCccceeEEECC------CCCEEEEecCC
Confidence            99999 455554 489999999974  222  2222211 000      00122334688888      7999998864 


Q ss_pred             CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEE
Q 017194          229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL  308 (375)
Q Consensus       229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l  308 (375)
                      ++.|.+|++.....                                    .......... ......+.++   |+|++|
T Consensus       249 ~~~I~v~~i~~~~~------------------------------------~~~~~~~~~~-~~~p~~~~~~---~dg~~l  288 (330)
T PRK11028        249 ASLISVFSVSEDGS------------------------------------VLSFEGHQPT-ETQPRGFNID---HSGKYL  288 (330)
T ss_pred             CCeEEEEEEeCCCC------------------------------------eEEEeEEEec-cccCCceEEC---CCCCEE
Confidence            78999999864211                                    1111112111 1234567899   999999


Q ss_pred             EEecC-CCeEEEEeCCC
Q 017194          309 ISGGN-DKLVKVWDCSR  324 (375)
Q Consensus       309 ~s~~~-dg~i~iwd~~~  324 (375)
                      +++.. +++|.+|+++.
T Consensus       289 ~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        289 IAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEEccCCcEEEEEEcC
Confidence            97765 89999998753

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=3.6e-21  Score=164.32  Aligned_cols=245  Identities=18%  Similarity=0.214  Sum_probs=191.5

Q ss_pred             ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      +.++.+.+|...|+|..|...|.++++|+.|..++||..+++   ..+....+|.+.|+.++.+.++.++++++.|..|+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            346667789999999999999999999999999999998864   56677888999999999999999999999999999


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      +|.+.++.++..+. +|++.|++++|+|-     .+.+.||++++||.+ ..+....  +.|. ...     ....+.++
T Consensus       258 vWrl~~~~pvsvLr-ghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~--prp~-~~~-----~~~~~~s~  322 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLR-GHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYV--PRPL-KFT-----EKDLVDSI  322 (1113)
T ss_pred             EEecCCCchHHHHh-ccccceeeeccCcc-----ccCCCCCceEecccc-ccccccC--CCCC-Ccc-----cccceeee
Confidence            99999999999999 99999999999985     377899999999998 1111111  1000 000     12345566


Q ss_pred             eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194          209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG  288 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~  288 (375)
                      .|..      ++..+++++.|+.-..|.+..                                              +..
T Consensus       323 ~~~~------~~~~f~Tgs~d~ea~n~e~~~----------------------------------------------l~~  350 (1113)
T KOG0644|consen  323 LFEN------NGDRFLTGSRDGEARNHEFEQ----------------------------------------------LAW  350 (1113)
T ss_pred             eccc------cccccccccCCcccccchhhH----------------------------------------------hhh
Confidence            6655      678888999988887777663                                              111


Q ss_pred             CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194          289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                      +...+.-+.++.  .-..+.+++-.+..+++|++.++         .++..+.+|...+..+.++|.+.....+++.||.
T Consensus       351 ~~~~lif~t~ss--d~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  351 RSNLLIFVTRSS--DLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             hccceEEEeccc--cccccceeeeeeeEeeeeecccc---------hhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence            222222122220  11246677777889999999999         7778889999999999999999888999999999


Q ss_pred             EEEEec
Q 017194          369 VKVYSI  374 (375)
Q Consensus       369 v~iw~~  374 (375)
                      ..|||+
T Consensus       420 t~iwdi  425 (1113)
T KOG0644|consen  420 TIIWDI  425 (1113)
T ss_pred             eEeeec
Confidence            999996

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=3.4e-19  Score=153.54  Aligned_cols=236  Identities=15%  Similarity=0.142  Sum_probs=162.6

Q ss_pred             CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcC
Q 017194           37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP  113 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  113 (375)
                      +..|.+||..... .+.+..|...+...+|+|+|+.|+.++.+   ..|++||+.+++. ..+..+.+   ....++|+|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g---~~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRG---HNGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCC---ccCceeECC
Confidence            4689999986544 56677788889999999999999988754   3799999987643 23343433   344689999


Q ss_pred             CCCeEEEEe-CCCcEEEE--eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCC
Q 017194          114 KSSFLACAD-DGGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLP  190 (375)
Q Consensus       114 ~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  190 (375)
                      ||+.|+.+. .+|.+.||  |+.+++. ..+. .+...+....|+|+|+.+++++..++...+|+++......... .  
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~--  332 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G--  332 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c--
Confidence            999888765 67765554  6655543 4555 5667788999999998545555567888888875432222221 1  


Q ss_pred             CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee
Q 017194          191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME  270 (375)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~  270 (375)
                                +..  ....|+|      +++.++..+.++ +.+||+.++...                           
T Consensus       333 ----------~~~--~~~~~Sp------DG~~ia~~~~~~-i~~~Dl~~g~~~---------------------------  366 (429)
T PRK01742        333 ----------GRG--YSAQISA------DGKTLVMINGDN-VVKQDLTSGSTE---------------------------  366 (429)
T ss_pred             ----------CCC--CCccCCC------CCCEEEEEcCCC-EEEEECCCCCeE---------------------------
Confidence                      111  3467888      899998887764 666998864211                           


Q ss_pred             eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC--Cceeeeecchhhhhhhhccccccee
Q 017194          271 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVN  348 (375)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~  348 (375)
                                    .+..+ .....+.|+   |||++|+.++.++.+.+|.+.  ++         ...+.+..|.+.+.
T Consensus       367 --------------~lt~~-~~~~~~~~s---PdG~~i~~~s~~g~~~~l~~~~~~G---------~~~~~l~~~~g~~~  419 (429)
T PRK01742        367 --------------VLSST-FLDESPSIS---PNGIMIIYSSTQGLGKVLQLVSADG---------RFKARLPGSDGQVK  419 (429)
T ss_pred             --------------EecCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCC---------CceEEccCCCCCCC
Confidence                          01000 112456789   999999999999988888763  33         44556667888889


Q ss_pred             eeeecCC
Q 017194          349 WLCTTPT  355 (375)
Q Consensus       349 ~~~~~~~  355 (375)
                      ..+|+|.
T Consensus       420 ~p~wsp~  426 (429)
T PRK01742        420 FPAWSPY  426 (429)
T ss_pred             CcccCCC
Confidence            9999983

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=9.7e-19  Score=153.40  Aligned_cols=250  Identities=15%  Similarity=0.209  Sum_probs=181.5

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCc---
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIR---  133 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~---  133 (375)
                      .+-..+.|+|-...++++...-.|++||.+.++....+..-......|+.+.+-.  |..++++++.||.|+||+--   
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            3566788899888899888778999999998776666555445567889988865  45679999999999999743   


Q ss_pred             --CceeeeeEec------CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194          134 --QHCLYKSLRA------GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       134 --~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                        +.+.+..+..      +..+.-.-+.|..... .|++++.-..|+|||.........+..+            ....+
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~------------s~t~v 1211 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYG------------SSTLV 1211 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccC------------CCccc
Confidence              2233333320      1111113456777766 5677666889999999988888877766            45667


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                      +++.-+..     .|+.+++|..||.|++||.+.....                                     ..+..
T Consensus      1212 TaLS~~~~-----~gn~i~AGfaDGsvRvyD~R~a~~d-------------------------------------s~v~~ 1249 (1387)
T KOG1517|consen 1212 TALSADLV-----HGNIIAAGFADGSVRVYDRRMAPPD-------------------------------------SLVCV 1249 (1387)
T ss_pred             eeeccccc-----CCceEEEeecCCceEEeecccCCcc-------------------------------------cccee
Confidence            77776653     6899999999999999999974211                                     23445


Q ss_pred             ecCCCcc--EEEEEEeecCCCCc-EEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc---ccceeeeeecCCCCCc
Q 017194          286 VGGHTAA--ASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL---NKKVNWLCTTPTESEN  359 (375)
Q Consensus       286 ~~~~~~~--v~~~~~s~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~  359 (375)
                      .+.|+..  |..+.+-   +.|- .|++|+.||.|++||++....       +-......|   .+..+++..++ ....
T Consensus      1250 ~R~h~~~~~Iv~~slq---~~G~~elvSgs~~G~I~~~DlR~~~~-------e~~~~iv~~~~yGs~lTal~VH~-hapi 1318 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQ---RQGLGELVSGSQDGDIQLLDLRMSSK-------ETFLTIVAHWEYGSALTALTVHE-HAPI 1318 (1387)
T ss_pred             ecccCCcccceeEEee---cCCCcceeeeccCCeEEEEecccCcc-------cccceeeeccccCccceeeeecc-CCCe
Confidence            6667666  9999987   6554 499999999999999998421       111122222   23589999998 7788


Q ss_pred             EEEeeCCCeEEEEecC
Q 017194          360 LVVCDTSKVVKVYSIS  375 (375)
Q Consensus       360 l~s~~~dg~v~iw~~~  375 (375)
                      +|+|+. +.|+||++.
T Consensus      1319 iAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             eeecCc-ceEEEEecC
Confidence            999988 999999974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=6.4e-18  Score=131.62  Aligned_cols=233  Identities=18%  Similarity=0.169  Sum_probs=171.3

Q ss_pred             CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC--CeEEEeeCCCCC
Q 017194          103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGR  180 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~  180 (375)
                      ...+..+.|+.+...|..|+.|| .++|............ .....|-.+-|+..   +++..+.+  ..+++++++.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence            34567777999998999999887 6788776543322222 23345556667654   55555543  459999999888


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce--e
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ--S  258 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~  258 (375)
                      .+..+.+.              ..|.++.++        .+.|++.-.+ .|+|||+++.+........+..+....  +
T Consensus        80 ~ICe~~fp--------------t~IL~VrmN--------r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS  136 (391)
T KOG2110|consen   80 TICEIFFP--------------TSILAVRMN--------RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS  136 (391)
T ss_pred             eEEEEecC--------------CceEEEEEc--------cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeec
Confidence            88888755              789999995        5566665555 499999999888777665544444444  4


Q ss_pred             ecccccceeee-----eeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe-EEEEeCCCceeeeecc
Q 017194          259 TSKVNIRDAEM-----EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSI  332 (375)
Q Consensus       259 ~s~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~  332 (375)
                      ++..+.++++-     |.....+....+.+..+..|.+++.+++|+   ++|.+|||+++.|+ |||+.+.+++...+. 
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs---~~G~llATASeKGTVIRVf~v~~G~kl~eF-  212 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS---PDGTLLATASEKGTVIRVFSVPEGQKLYEF-  212 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC---CCCCEEEEeccCceEEEEEEcCCccEeeee-
Confidence            45555688873     334444556677788889999999999999   99999999999987 799999999644211 


Q ss_pred             hhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          333 NNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       333 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                             ..| ....|.+++|+| ++++|++.+..++|.++.++
T Consensus       213 -------RRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  213 -------RRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             -------eCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEec
Confidence                   111 246789999999 99999999999999999874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=5.5e-19  Score=144.04  Aligned_cols=172  Identities=15%  Similarity=0.202  Sum_probs=138.9

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeE
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ  108 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  108 (375)
                      ..++.++.||.+.|.+ ..++....+.+|.+.+.+-.|+|+|.-|++++.||.|++|.-.. -....+..   ...+|.|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q---~~~~v~c  150 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQ---NEESIRC  150 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhh---cCceeEE
Confidence            4688889999999988 45777788899999999999999999999999999999999652 11122222   2678999


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      ++|.|+.+.++.+. .+.+.|=.+.....+..++ .|.+-|.++.|++..+ ++++|++|-..++||-. |..+..-.. 
T Consensus       151 ~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~-  225 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAA-  225 (737)
T ss_pred             EEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCCh-
Confidence            99999987776663 4678787777777777888 9999999999999998 89999999999999965 555544332 


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                                  |..+|++++|.|      + +.+++++..
T Consensus       226 ------------~ey~ITSva~np------d-~~~~v~S~n  247 (737)
T KOG1524|consen  226 ------------EEYAITSVAFNP------E-KDYLLWSYN  247 (737)
T ss_pred             ------------hccceeeeeecc------c-cceeeeeee
Confidence                        578999999999      5 677776654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=1.8e-20  Score=149.87  Aligned_cols=232  Identities=16%  Similarity=0.228  Sum_probs=187.4

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      ......+.++.+|++|+.++..|.|-.+|..+.+....+..    ...|.++.|..+.+++|++ ....++||| ..|..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtE  202 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTE  202 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcE
Confidence            45567899999999999999999999999998765544444    4679999999999899888 557899999 46777


Q ss_pred             eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      +..++ . ...|..+.|.|..- +|++++..|.++.-|+..|+.+..+..+             .+.+..+.-+|     
T Consensus       203 lHClk-~-~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~-------------~G~~~vm~qNP-----  261 (545)
T KOG1272|consen  203 LHCLK-R-HIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTG-------------AGRTDVMKQNP-----  261 (545)
T ss_pred             Eeehh-h-cCchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHcc-------------CCccchhhcCC-----
Confidence            88887 4 46899999999875 8899999999999999999999888765             56788888888     


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194          218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  297 (375)
Q Consensus       218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (375)
                       -+..+-+|...|+|.+|.....                                        .++..+-.|.++|.+++
T Consensus       262 -~NaVih~GhsnGtVSlWSP~sk----------------------------------------ePLvKiLcH~g~V~siA  300 (545)
T KOG1272|consen  262 -YNAVIHLGHSNGTVSLWSPNSK----------------------------------------EPLVKILCHRGPVSSIA  300 (545)
T ss_pred             -ccceEEEcCCCceEEecCCCCc----------------------------------------chHHHHHhcCCCcceEE
Confidence             5888999999999999998864                                        34456778999999999


Q ss_pred             EeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +.   ++|+|+||.+.|..++|||++...         .+..... .-+...+++|. .|  +++++....|.||.
T Consensus       301 v~---~~G~YMaTtG~Dr~~kIWDlR~~~---------ql~t~~t-p~~a~~ls~Sq-kg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  301 VD---RGGRYMATTGLDRKVKIWDLRNFY---------QLHTYRT-PHPASNLSLSQ-KG--LLALSYGDHVQIWK  360 (545)
T ss_pred             EC---CCCcEEeecccccceeEeeecccc---------ccceeec-CCCcccccccc-cc--ceeeecCCeeeeeh
Confidence            99   999999999999999999999974         2222222 34556667765 33  44444555688884

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.83  E-value=5.8e-18  Score=129.43  Aligned_cols=225  Identities=14%  Similarity=0.111  Sum_probs=173.8

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-c
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-H  135 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~  135 (375)
                      -..+|+|.+|++|+..++.+.....|.||.......++...++..|...|+.++|+|..+.|++++.|..-++|.... +
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            457999999999999999999999999999987777889999999999999999999999999999999999999843 3


Q ss_pred             --eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc---eEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          136 --CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN---KIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       136 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                        +..-.+. .++..++++.|+|.++ .|++|+....|.+|-++....-   +.++.+            ....|.++.|
T Consensus        89 ~WkptlvLl-RiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkP------------irStv~sldW  154 (361)
T KOG1523|consen   89 TWKPTLVLL-RINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKP------------IRSTVTSLDW  154 (361)
T ss_pred             eeccceeEE-EeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCc------------cccceeeeec
Confidence              3333344 5888999999999998 7999999999999987754322   112111            3467999999


Q ss_pred             cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194          211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  290 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
                      +|      ++-+|++|+.|+..++|...-.....+.           +-+|=|..+           .-.+++.++....
T Consensus       155 hp------nnVLlaaGs~D~k~rVfSayIK~Vdekp-----------ap~pWgsk~-----------PFG~lm~E~~~~g  206 (361)
T KOG1523|consen  155 HP------NNVLLAAGSTDGKCRVFSAYIKGVDEKP-----------APTPWGSKM-----------PFGQLMSEASSSG  206 (361)
T ss_pred             cC------CcceecccccCcceeEEEEeeeccccCC-----------CCCCCccCC-----------cHHHHHHhhccCC
Confidence            99      8999999999999999976522111110           001111100           0112233444557


Q ss_pred             ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      +.+..+.|+   |+|..|+-.+.|..+.+=|.....
T Consensus       207 gwvh~v~fs---~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  207 GWVHGVLFS---PSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CceeeeEeC---CCCCEeeEecCCCceEEeecCCCc
Confidence            889999999   999999999999999999988763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.4e-17  Score=129.41  Aligned_cols=306  Identities=12%  Similarity=0.075  Sum_probs=191.0

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc-
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW-   93 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-   93 (375)
                      -.+.-++|++. -..+|++..|-+|++|+-.. ++...++. ....|++++|-|.+..-++.+..+-|.+|.....-.. 
T Consensus        99 ~dlr~~aWhqH-~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechh-hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence            34667899987 56788999999999999776 44444442 3678999999997655444444677999986531111 


Q ss_pred             ----------cccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194           94 ----------RPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        94 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                                ..+....+| .+|+++.|.+||..+++++ .|..|.|||..++..+.... .-.+.+.-+.|+||+. .|
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd-~l  253 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD-VL  253 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC-EE
Confidence                      112223444 6899999999999999887 57789999999887665543 3456788999999999 68


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      +.++-|+..++|......-......+             ++.|..-.|+|      .|++|..++. |.-++|.+.-..+
T Consensus       254 faAt~davfrlw~e~q~wt~erw~lg-------------sgrvqtacWsp------cGsfLLf~~s-gsp~lysl~f~~~  313 (445)
T KOG2139|consen  254 FAATCDAVFRLWQENQSWTKERWILG-------------SGRVQTACWSP------CGSFLLFACS-GSPRLYSLTFDGE  313 (445)
T ss_pred             EEecccceeeeehhcccceecceecc-------------CCceeeeeecC------CCCEEEEEEc-CCceEEEEeecCC
Confidence            89999999999976544333333333             46899999999      6777665543 3445555543221


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC---CCccEEEEEEeecCCCCcEEEEecCC-----
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGND-----  314 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~l~s~~~d-----  314 (375)
                      ......            |.+..-+       .....++.+....+   -.+++.+++|.   |.|.+||+.-..     
T Consensus       314 ~~~~~~------------~~~~k~~-------lliaDL~e~ti~ag~~l~cgeaq~lawD---psGeyLav~fKg~~~v~  371 (445)
T KOG2139|consen  314 DSVFLR------------PQSIKRV-------LLIADLQEVTICAGQRLCCGEAQCLAWD---PSGEYLAVIFKGQSFVL  371 (445)
T ss_pred             CccccC------------cccceee-------eeeccchhhhhhcCcccccCccceeeEC---CCCCEEEEEEcCCchhh
Confidence            111110            0000000       00000000111111   14678999999   999999986543     


Q ss_pred             ---CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC--CCCCcEEEeeCCCeEEEEec
Q 017194          315 ---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       315 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~v~iw~~  374 (375)
                         ..|.+||..........    ......+.  ....++|.|  .++.+|..+-..|.+.-|.+
T Consensus       372 ~~k~~i~~fdtr~sp~vels----~cg~i~ge--~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  372 LCKLHISRFDTRKSPPVELS----YCGMIGGE--YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             hhhhhhhhhcccccCceEEE----ecccccCC--CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence               34777887765221100    00111111  133455554  45666777777787776654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.1e-19  Score=145.94  Aligned_cols=247  Identities=12%  Similarity=0.103  Sum_probs=165.6

Q ss_pred             eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcE
Q 017194           50 VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDV  127 (375)
Q Consensus        50 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i  127 (375)
                      +.+.+.+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+  ..+|...|.++.|-|  +.+.+++|..|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            35678899999999999999999999999999999998754333333  357899999999999  46789999999999


Q ss_pred             EEEeCcCc----------eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe-cCCCCCCCCC
Q 017194          128 KIIDIRQH----------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNA  196 (375)
Q Consensus       128 ~iwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~  196 (375)
                      +++|+...          +....+. .|...|..++-.|+++..+.++++||+++-+|++.......-. .+    ..-.
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~----~~l~  194 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP----SILV  194 (758)
T ss_pred             EEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc----HHHH
Confidence            99999842          2344455 7889999999999998799999999999999998643211100 00    0000


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc----ccCCCCCCce-eecccccceeeeee
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK----STTKPLKGSQ-STSKVNIRDAEMEI  271 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~-~~s~~g~~~~~~~~  271 (375)
                      ..+..--...++.++|.     +..+|++|+.|-..++||.+.........    ..+.....++ .|+|.+...     
T Consensus       195 ny~~~lielk~ltisp~-----rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn-----  264 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPS-----RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN-----  264 (758)
T ss_pred             HhchhhheeeeeeecCC-----CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC-----
Confidence            00001134678899986     78899999999999999975432222111    1111111112 233333210     


Q ss_pred             eecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          272 LDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       272 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                    ..+ -...++++.+..|.|+|.-|+..-..-.|+++|+...+.
T Consensus       265 --------------~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  265 --------------SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             --------------cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence                          011 122343333333338987665544445799999988754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.82  E-value=2e-18  Score=132.59  Aligned_cols=310  Identities=14%  Similarity=0.138  Sum_probs=199.0

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~   94 (375)
                      +.|.-+.|..|.-..|.....++.|.+|++...+-...++....++.+++|+|+|+.++. ...+-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            456678888883344556678899999999988888888888999999999999976554 5558899999998754322


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeCCCcE---EEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDV---KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i---~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                       +.   ..+..+..++|+|||++.+..+.-...   .+.....-..++.+. ..+-..+.+.|+|||. .++        
T Consensus       129 -~~---~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~-~la--------  194 (447)
T KOG4497|consen  129 -LP---HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEWSPDGN-WLA--------  194 (447)
T ss_pred             -ec---ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceECCCCc-EEE--------
Confidence             11   124567889999999998888754222   222122234455565 5556778999999997 343        


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc--
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST--  249 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--  249 (375)
                       +||---.-.+..++.              .-.+..++|+|      .+++|++|+.|+.+++.+--+-+....+...  
T Consensus       195 -Vwd~~Leykv~aYe~--------------~lG~k~v~wsP------~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s  253 (447)
T KOG4497|consen  195 -VWDNVLEYKVYAYER--------------GLGLKFVEWSP------CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS  253 (447)
T ss_pred             -Eecchhhheeeeeee--------------ccceeEEEecc------ccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence             555332222223332              25688999999      6999999999999999776543322221111  


Q ss_pred             ----------------CCCCCCceeecccccceeeee----eeecC-Ccc---eeEeeeeecCCCccEEEEEEeecCCCC
Q 017194          250 ----------------TKPLKGSQSTSKVNIRDAEME----ILDQS-GGK---RLHLDYSVGGHTAAASCVAFSMFGERG  305 (375)
Q Consensus       250 ----------------~~~~~~~~~~s~~g~~~~~~~----~~~~~-~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~  305 (375)
                                      ......+++|.|..-......    .+... ...   ..+...........+..++|+   +|.
T Consensus       254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs---~Ds  330 (447)
T KOG4497|consen  254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS---CDS  330 (447)
T ss_pred             ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec---CCc
Confidence                            111223334433221110000    00000 000   111112222335568889999   999


Q ss_pred             cEEEEecC--CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          306 KYLISGGN--DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       306 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .|++|-.+  -+.+.+||++..         + +........+|....|.| ....|+.+.....+++|..
T Consensus       331 ~y~aTrnd~~PnalW~Wdlq~l---------~-l~avLiQk~piraf~WdP-~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  331 TYAATRNDKYPNALWLWDLQNL---------K-LHAVLIQKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             eEEeeecCCCCceEEEEechhh---------h-hhhhhhhccceeEEEeCC-CCceEEEEcCCceEEEEcC
Confidence            99998754  478999999995         3 344555677899999999 4445777766678999964

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=4e-18  Score=151.73  Aligned_cols=275  Identities=12%  Similarity=0.095  Sum_probs=186.0

Q ss_pred             EecccCceeeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCCCC----cccccccccCCCcceeEEEEcCCCCe
Q 017194           43 FDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSF  117 (375)
Q Consensus        43 w~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~  117 (375)
                      |+. +|..+..+..|...+..++.++.. .++++|+.||+|++|+.+.-.    ..+...++......+.++...+.++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 377788888999999999887654 899999999999999987421    11222223323678999999999999


Q ss_pred             EEEEeCCCcEEEEeCcCc--e-----eeeeEecCcccceeEE-EEeeCCCc-EEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          118 LACADDGGDVKIIDIRQH--C-----LYKSLRAGHSSICSSV-QFIPWKPW-EVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       118 l~~~~~dg~i~iwd~~~~--~-----~~~~~~~~~~~~v~~~-~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +|+++.||.|++.+++..  +     ..+.......+.+.+| +|...... .++.+..-+.|..||+++.....+++..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999998752  1     1111110112233333 34333333 6888889999999999988877776644


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  268 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  268 (375)
                      .           ..+.|++++.+|      .+.+++.|+..|.+.+||++-.......                      
T Consensus      1193 ~-----------~hG~vTSi~idp------~~~WlviGts~G~l~lWDLRF~~~i~sw---------------------- 1233 (1431)
T KOG1240|consen 1193 L-----------RHGLVTSIVIDP------WCNWLVIGTSRGQLVLWDLRFRVPILSW---------------------- 1233 (1431)
T ss_pred             c-----------cccceeEEEecC------CceEEEEecCCceEEEEEeecCceeecc----------------------
Confidence            2           247899999999      6999999999999999999954322211                      


Q ss_pred             eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec--CCCeEEEEeCCCceeeeecc---hhhhhhhhc--
Q 017194          269 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSI---NNDLLIKNI--  341 (375)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~--  341 (375)
                                      .. ++..+++.+..+|+.+.....++++  ..+-|.+|++.++.......   ....+....  
T Consensus      1234 ----------------~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1234 ----------------EH-PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPS 1296 (1431)
T ss_pred             ----------------cC-cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhccc
Confidence                            22 3347888888887666556666554  47789999999986542111   111111111  


Q ss_pred             -----ccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          342 -----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       342 -----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                           .+.-.....++.. .+..+.+|+.|..|+.||..
T Consensus      1297 ~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1297 NDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             ccCCCCCcccceeeeccc-CCceeeecCCccceeeccCC
Confidence                 1112222233333 45689999999999999963

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=9.2e-17  Score=125.00  Aligned_cols=213  Identities=14%  Similarity=0.091  Sum_probs=143.4

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--------------eeEeeecCccEEEEEEeCCCCeEEEEcCC-
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--------------QLVTDVGNGPVTSLCFKSGNEDIIYVSSG-   79 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-   79 (375)
                      ...|+|++|-|..+..|+.|+..| |.+|.......              +..-.+| .+|++++|.+||..+++++.+ 
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            456999999999888899998865 99998653211              1112233 789999999999999999875 


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      ..|.|||..++...... ..  ..+.+.-+.|+||+.+|+++.-|+..++|+........... .-.+.|...+|+|+|.
T Consensus       218 ssi~iWdpdtg~~~pL~-~~--glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLI-PK--GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGS  293 (445)
T ss_pred             ceEEEEcCCCCCccccc-cc--CCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCC
Confidence            68999999987654333 11  25789999999999999999999999999655433322333 2345899999999999


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcc---------eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPN---------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      .+|++++....++--........         ..+....++.....+...--+.+.+++|.|      .|.+|++....+
T Consensus       294 fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp------sGeyLav~fKg~  367 (445)
T KOG2139|consen  294 FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP------SGEYLAVIFKGQ  367 (445)
T ss_pred             EEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC------CCCEEEEEEcCC
Confidence            77777765544433222211110         111111111111222222346788999998      799999887554


Q ss_pred             --------cEEEEeCCC
Q 017194          231 --------VVDVINIES  239 (375)
Q Consensus       231 --------~i~i~d~~~  239 (375)
                              .|.+||.+.
T Consensus       368 ~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  368 SFVLLCKLHISRFDTRK  384 (445)
T ss_pred             chhhhhhhhhhhhcccc
Confidence                    355566653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=5.3e-18  Score=146.14  Aligned_cols=202  Identities=11%  Similarity=0.078  Sum_probs=136.7

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc-CC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d   79 (375)
                      .+...+.+..|...+.+..|+|| ++.|+..+.+   ..|.+||+.+++... +.........++|+|||+.|+.++ .+
T Consensus       192 dg~~~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        192 DGFNQFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             CCCCceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecC
Confidence            34456677888889999999999 7888876543   479999998876422 221222344689999999888765 57


Q ss_pred             CeEEE--EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCc-eeeeeEecCcccceeEEEEe
Q 017194           80 KEVKS--FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        80 ~~i~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~  155 (375)
                      |.+.|  ||+.++..    ..+..+...+....|+||++.|+..+ .++...+|++... .....+  .+..  ....|+
T Consensus       270 g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~S  341 (429)
T PRK01742        270 GVLNIYVMGANGGTP----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQIS  341 (429)
T ss_pred             CcEEEEEEECCCCCe----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCccCC
Confidence            76555  46654432    22333456788899999999877655 5778888876532 222222  2333  457899


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  235 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  235 (375)
                      |+|+ .++..+.++ +.+||+.+++... +...              .....+.|+|      ++++++.++.++.+.+|
T Consensus       342 pDG~-~ia~~~~~~-i~~~Dl~~g~~~~-lt~~--------------~~~~~~~~sP------dG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        342 ADGK-TLVMINGDN-VVKQDLTSGSTEV-LSST--------------FLDESPSISP------NGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             CCCC-EEEEEcCCC-EEEEECCCCCeEE-ecCC--------------CCCCCceECC------CCCEEEEEEcCCCceEE
Confidence            9998 566666654 5669998876532 2111              1224567888      89999999999988888


Q ss_pred             eCC
Q 017194          236 NIE  238 (375)
Q Consensus       236 d~~  238 (375)
                      ++.
T Consensus       399 ~~~  401 (429)
T PRK01742        399 QLV  401 (429)
T ss_pred             EEE
Confidence            764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=3.6e-19  Score=142.46  Aligned_cols=266  Identities=14%  Similarity=0.147  Sum_probs=205.5

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      .-+.+.++.+ |+.|+.|+.-|.|..+|..++.....+.. ...|.++.|..+.+++|++ ..+.++|||-. |..+..+
T Consensus       131 GPY~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl  206 (545)
T KOG1272|consen  131 GPYHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL  206 (545)
T ss_pred             CCeeeeecCC-ccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh
Confidence            3456888888 89999999999999999999999888875 6789999998877766655 47889999965 5556666


Q ss_pred             ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194           97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      +.    ...|..+.|.|..-+|++++..|.++--|+.+|+.+..+. .-.+.+..|+-+|-+. ++-+|...|+|.+|..
T Consensus       207 k~----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  207 KR----HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSP  280 (545)
T ss_pred             hh----cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccc-eEEEcCCCceEEecCC
Confidence            65    3689999999998889999999999999999999999998 7778899999999887 8899999999999999


Q ss_pred             CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCc
Q 017194          177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS  256 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  256 (375)
                      ...+++..+..             |.++|.+|++.+      +|+++++++.|..++|||++...++.....  ..+...
T Consensus       281 ~skePLvKiLc-------------H~g~V~siAv~~------~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~  339 (545)
T KOG1272|consen  281 NSKEPLVKILC-------------HRGPVSSIAVDR------GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASN  339 (545)
T ss_pred             CCcchHHHHHh-------------cCCCcceEEECC------CCcEEeecccccceeEeeeccccccceeec--CCCccc
Confidence            99888876653             589999999999      899999999999999999998775554444  345666


Q ss_pred             eeecccccceeeeee----eecCCcceeEeeeeecCC--CccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          257 QSTSKVNIRDAEMEI----LDQSGGKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       257 ~~~s~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      +++|..|-..+..|.    |.............+..|  ..+|..+.|.   |-...|-.|-.-|.
T Consensus       340 ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~Fc---P~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  340 LSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFC---PYEDVLGIGHAGGI  402 (545)
T ss_pred             cccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceec---cHHHeeeccccCCc
Confidence            778877766654332    211111111111122222  3489999999   54445555544443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.3e-17  Score=133.23  Aligned_cols=292  Identities=13%  Similarity=0.137  Sum_probs=201.1

Q ss_pred             cCCCceeEEEEecCCCCE-EEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           13 GHKATATCCIASRDRPGF-VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      +|...-+.+..+|| |+| +|+|..--.|++||+........-......|.-.-++.|-..++.-..|.+|.+..-. |.
T Consensus        49 e~p~ast~ik~s~D-GqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPD-GQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GR  126 (703)
T ss_pred             CCccccceeEecCC-CcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ce
Confidence            36778889999999 565 6777788899999998655432222224455555566666666666778877665432 11


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                       ...+..    +..-.+++++.-..-|++++....|+-++++.|+.+..|. ...+.++++..++... +|++|+.+|.|
T Consensus       127 -hy~~RI----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hg-Lla~Gt~~g~V  199 (703)
T KOG2321|consen  127 -HYRTRI----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHG-LLACGTEDGVV  199 (703)
T ss_pred             -eeeeec----CcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccc-eEEecccCceE
Confidence             111111    2233455665544445555556789999999999999998 6778999999999887 89999999999


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      .+||.+....+..+.......+..  ..-....|+++.|+.      +|-.+++|+.+|.+.|||+++.+..        
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~p--g~~~~~svTal~F~d------~gL~~aVGts~G~v~iyDLRa~~pl--------  263 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHP--GGDAAPSVTALKFRD------DGLHVAVGTSTGSVLIYDLRASKPL--------  263 (703)
T ss_pred             EEecchhhhhheeeecccccCCCc--cccccCcceEEEecC------CceeEEeeccCCcEEEEEcccCCce--------
Confidence            999999988888887652210000  000123589999987      6999999999999999999974322        


Q ss_pred             CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec
Q 017194          252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  331 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  331 (375)
                                                     +..-.+..-+|..+.|.+. .++..+++.. ...++|||-.+++     
T Consensus       264 -------------------------------~~kdh~~e~pi~~l~~~~~-~~q~~v~S~D-k~~~kiWd~~~Gk-----  305 (703)
T KOG2321|consen  264 -------------------------------LVKDHGYELPIKKLDWQDT-DQQNKVVSMD-KRILKIWDECTGK-----  305 (703)
T ss_pred             -------------------------------eecccCCccceeeeccccc-CCCceEEecc-hHHhhhcccccCC-----
Confidence                                           1122233567888999731 1245566655 4789999999984     


Q ss_pred             chhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          332 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       332 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                          ... ....+..++.+|+.| ++-+++++-.++.+..|-
T Consensus       306 ----~~a-siEpt~~lND~C~~p-~sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  306 ----PMA-SIEPTSDLNDFCFVP-GSGMFFTANESSKMHTYY  341 (703)
T ss_pred             ----cee-eccccCCcCceeeec-CCceEEEecCCCcceeEE
Confidence                332 233445699999999 777899988877666553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.79  E-value=1.9e-16  Score=132.13  Aligned_cols=305  Identities=12%  Similarity=0.096  Sum_probs=181.3

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-CCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEV   82 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i   82 (375)
                      +.+.+.++....+.-..+.|+|| ++++++++.||.|.++|+.+++.+.++.. ......+++++||++++++.. .+.+
T Consensus        25 t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v  102 (369)
T PF02239_consen   25 TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTV  102 (369)
T ss_dssp             T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEE
T ss_pred             CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCce
Confidence            45566777765444445778998 89999999999999999999999999986 445678999999999987764 7899


Q ss_pred             EEEECCCCCcccccccccC----CCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceee--eeEecCcccceeEEEEe
Q 017194           83 KSFDVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLY--KSLRAGHSSICSSVQFI  155 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~  155 (375)
                      .++|.++.+..+.+.....    ....+..+..+|....++..- +.+.|.+.|....+.+  ..+.  .........|.
T Consensus       103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~d  180 (369)
T PF02239_consen  103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFD  180 (369)
T ss_dssp             EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-
T ss_pred             eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccC
Confidence            9999998665554443211    235677888888888555554 4588988897765433  3333  44567789999


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc---cc-cCCCCEEEEEecCCc
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD---ML-DKTNKICVVAKGDGV  231 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~-~~~~~~l~~~~~dg~  231 (375)
                      |+++++++....+..|-++|..+++....+..+...         ++.+...+ .+|..   |. ...+...++.-..+.
T Consensus       181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p---------~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP---------HPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB---------EETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccceeeecccccceeEEEeeccceEEEEeeccccc---------cccccccc-cCCCcceEEeeccccceecccccCCc
Confidence            999976666677889999999998887777654211         12222221 12210   00 112333333334446


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeee-------cCCcceeEeeeeecCC-CccEEEEEEeecCC
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-------QSGGKRLHLDYSVGGH-TAAASCVAFSMFGE  303 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~  303 (375)
                      +.+||....+...........  .-+..+|+++++......+       ..+...++....+... ...+..+.|+   +
T Consensus       251 v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~---~  325 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN---P  325 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE----T
T ss_pred             cccchhhcCeEEEEEECCCCc--ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC---C
Confidence            667888877766666554322  6677899999998752111       1122222333333221 2348899999   9


Q ss_pred             CCcEEEEecC--CCeEEEEeCCCcee
Q 017194          304 RGKYLISGGN--DKLVKVWDCSRFQG  327 (375)
Q Consensus       304 ~~~~l~s~~~--dg~i~iwd~~~~~~  327 (375)
                      +|+++..+..  ++.|.+||..+.+.
T Consensus       326 dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  326 DGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             TSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             CCCEEEEEEecCCCEEEEEECCCcEE
Confidence            9997665543  44799999999854

...

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=4.6e-18  Score=126.53  Aligned_cols=248  Identities=19%  Similarity=0.162  Sum_probs=166.3

Q ss_pred             CCCeeee-cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC-----CC----eEEE
Q 017194            6 AKPRRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-----NE----DIIY   75 (375)
Q Consensus         6 ~~~~~l~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~----~l~~   75 (375)
                      ..+-.++ .|...|+.+.--|+  ..+.+-+.|+.+.+|++.-+..+   ..|.-.++++.|.+.     ++    .++.
T Consensus        46 r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia~s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~y  120 (323)
T KOG0322|consen   46 RDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIAYSAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEY  120 (323)
T ss_pred             ccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEccCcceE---EEeeeeccccccccceeccCCCcchhheec
Confidence            3344555 56788999998885  57889999999999999865432   334455566666432     11    1111


Q ss_pred             EcCCC-eEEEEECCCCCcccccc-cccCCCcceeEEEEcC-CCC--eEEEEeCCCcEEEEeCcCcee----------eee
Q 017194           76 VSSGK-EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNP-KSS--FLACADDGGDVKIIDIRQHCL----------YKS  140 (375)
Q Consensus        76 ~~~d~-~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~----------~~~  140 (375)
                      -+... .+.+-|........... .-....+.+.+..+.. .+.  ++++|.++|.+.+||+.++..          ...
T Consensus       121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence            11110 01111111100000000 0111245566666433 232  467888999999999998733          333


Q ss_pred             EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC--Cc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194          141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML  216 (375)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (375)
                      .. .|..+|.++.|.+.-. .=++|+.+..+..|+++..  .+  ...+..             ....+..+.+.|    
T Consensus       201 ~a-sh~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-------------knpGv~gvrIRp----  261 (323)
T KOG0322|consen  201 NA-SHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKEITL-------------KNPGVSGVRIRP----  261 (323)
T ss_pred             hh-hccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccceEEe-------------cCCCccceEEcc----
Confidence            34 6889999999987655 4677888888999988743  21  122222             235688889988    


Q ss_pred             cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194          217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV  296 (375)
Q Consensus       217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  296 (375)
                        |++.+|+++.|+.|++|..++.                                        +.+..++.|...|+++
T Consensus       262 --D~KIlATAGWD~RiRVyswrtl----------------------------------------~pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  262 --DGKILATAGWDHRIRVYSWRTL----------------------------------------NPLAVLKYHSAGVNAV  299 (323)
T ss_pred             --CCcEEeecccCCcEEEEEeccC----------------------------------------CchhhhhhhhcceeEE
Confidence              8999999999999999999974                                        5566888999999999


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                      +|+   |+..++|+++.|++|.+|++
T Consensus       300 Afs---pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFS---PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeC---CCCchhhhccCCceEEeeec
Confidence            999   89999999999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.78  E-value=6.1e-18  Score=137.99  Aligned_cols=163  Identities=18%  Similarity=0.319  Sum_probs=134.5

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEeccc--------------Cc--------------eeeEeeecCccEEEEEE
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS--------------KD--------------VQLVTDVGNGPVTSLCF   66 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~--------------~~--------------~~~~~~~~~~~v~~l~~   66 (375)
                      +..|+|+.|-|.+...++.+-.+|.+.+||.+-              +.              ++..+..-...|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            478999999998777888888999999997531              11              12222223568899999


Q ss_pred             eCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc
Q 017194           67 KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS  146 (375)
Q Consensus        67 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (375)
                      +|||++||+.+.||.++|+|..+.+.....+.+   -+...|++|+|||++|++|++|-.|.||.+..++.+..=. +|.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-GHk  374 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-GHK  374 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-ccc
Confidence            999999999999999999999986666666666   5789999999999999999999999999999999999988 999


Q ss_pred             cceeEEEEeeC-----------------------------------------------CCcEEEEeecCCeEEEeeCCCC
Q 017194          147 SICSSVQFIPW-----------------------------------------------KPWEVISGGLDSKLVMWDFSKG  179 (375)
Q Consensus       147 ~~v~~~~~~~~-----------------------------------------------~~~~l~~~~~d~~i~~wd~~~~  179 (375)
                      +.|..++|.|-                                               -.|.|.+.+.|-++.+||+...
T Consensus       375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence            99999999830                                               1246788899999999999754


Q ss_pred             Cc
Q 017194          180 RP  181 (375)
Q Consensus       180 ~~  181 (375)
                      ..
T Consensus       455 ~L  456 (636)
T KOG2394|consen  455 VL  456 (636)
T ss_pred             hc
Confidence            43

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.78  E-value=8.5e-17  Score=131.41  Aligned_cols=234  Identities=18%  Similarity=0.243  Sum_probs=155.4

Q ss_pred             EEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc-cccccccCCCcceeEEEE-----cCCCCeEEEEeCCCcEEEEeCcC
Q 017194           61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW-RPLESYNYNKEEINQIVC-----NPKSSFLACADDGGDVKIIDIRQ  134 (375)
Q Consensus        61 v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~  134 (375)
                      +....++-.|++|+..- ...+++|+.+.+... .++...........+-+|     .|.+--++.|-.-|.|.+.|...
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            33444445566665433 457899998742221 222211111222333334     34566688898899999999876


Q ss_pred             ceeeeeEec---CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--------------ceEEec-CCCCCCCCC
Q 017194          135 HCLYKSLRA---GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--------------NKIVNF-GLPENNGNA  196 (375)
Q Consensus       135 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------------~~~~~~-~~~~~~~~~  196 (375)
                      .+..+.+..   -....|+++.|-|.++..|+.+-.+|.+++||..-...              ...... .........
T Consensus       205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~  284 (636)
T KOG2394|consen  205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA  284 (636)
T ss_pred             hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence            433222220   13468999999998887888899999999998642110              000000 000000001


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                      .-......|+..+|+|      ||++||+.+.||.++|||..+.+                                   
T Consensus       285 ~w~~~~g~in~f~FS~------DG~~LA~VSqDGfLRvF~fdt~e-----------------------------------  323 (636)
T KOG2394|consen  285 RWHIGEGSINEFAFSP------DGKYLATVSQDGFLRIFDFDTQE-----------------------------------  323 (636)
T ss_pred             eeEeccccccceeEcC------CCceEEEEecCceEEEeeccHHH-----------------------------------
Confidence            1112345788888888      89999999999999999999742                                   


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  353 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  353 (375)
                           ++..++.--+...|++||   |||+||++|++|..|.||.+...         +++..-.+|...|..++|.
T Consensus       324 -----Llg~mkSYFGGLLCvcWS---PDGKyIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  324 -----LLGVMKSYFGGLLCVCWS---PDGKYIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             -----HHHHHHhhccceEEEEEc---CCccEEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeec
Confidence                 222333445678999999   99999999999999999999998         7778888999999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.9e-16  Score=123.37  Aligned_cols=248  Identities=11%  Similarity=0.134  Sum_probs=177.2

Q ss_pred             CCCceeEEEEecCCCC-EEEEeCCCCcEEEEecccCceeeEe------eecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           14 HKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVT------DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      -...|..++|.-++.. .+...+.+..+....++.......+      .....+|..+... + ..|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence            3456888888766333 3444446777888877766654332      3345677777664 3 3688888899999999


Q ss_pred             CCCCCc-ccccccccCCCcceeEEEEcCCCCe-EEEEeCC--CcEEEEeCcCceeeeeEecC--------cccceeEEEE
Q 017194           87 VHMPAS-WRPLESYNYNKEEINQIVCNPKSSF-LACADDG--GDVKIIDIRQHCLYKSLRAG--------HSSICSSVQF  154 (375)
Q Consensus        87 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~  154 (375)
                      .+.+.. ...+..+.. ..++..+.-++.... +++|+..  ..+.+||++..+.+..-+..        -.-.++++.|
T Consensus       132 ~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             ccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            884331 111112221 245666777775555 5558888  78999999877544332210        1125678888


Q ss_pred             eeCC-CcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194          155 IPWK-PWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  232 (375)
Q Consensus       155 ~~~~-~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i  232 (375)
                      .+.. .+.|++++.-+.+++||.+.+ +++..+.+.             ..++.++...|      +++++++|..-|.+
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-------------E~~is~~~l~p------~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-------------ENPISSTGLTP------SGNFIYTGNTKGQL  271 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccc-------------cCcceeeeecC------CCcEEEEecccchh
Confidence            8762 237999999999999999865 466666654             57899999999      79999999999999


Q ss_pred             EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec
Q 017194          233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG  312 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~  312 (375)
                      ..||++.++..                                       ...+.+-.+.|+++..+   |.++++|+++
T Consensus       272 ~~FD~r~~kl~---------------------------------------g~~~kg~tGsirsih~h---p~~~~las~G  309 (412)
T KOG3881|consen  272 AKFDLRGGKLL---------------------------------------GCGLKGITGSIRSIHCH---PTHPVLASCG  309 (412)
T ss_pred             heecccCceee---------------------------------------ccccCCccCCcceEEEc---CCCceEEeec
Confidence            99999975322                                       22366778899999999   8899999999


Q ss_pred             CCCeEEEEeCCCc
Q 017194          313 NDKLVKVWDCSRF  325 (375)
Q Consensus       313 ~dg~i~iwd~~~~  325 (375)
                      -|+.|+|+|+++.
T Consensus       310 LDRyvRIhD~ktr  322 (412)
T KOG3881|consen  310 LDRYVRIHDIKTR  322 (412)
T ss_pred             cceeEEEeecccc
Confidence            9999999999996

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=5.8e-16  Score=133.20  Aligned_cols=234  Identities=12%  Similarity=0.154  Sum_probs=156.0

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---CCeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      ..|.++|..... .+.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++. ..+..+.   +.+..+.|+||
T Consensus       179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~---~~~~~~~~SPD  253 (429)
T PRK03629        179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP---RHNGAPAFSPD  253 (429)
T ss_pred             eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCC---CCcCCeEECCC
Confidence            368899987554 3445556778999999999999987653   35799999987643 3333343   33556899999


Q ss_pred             CCeEEEE-eCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec-CC--eEEEeeCCCCCcceEEecC
Q 017194          115 SSFLACA-DDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DS--KLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       115 ~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~  188 (375)
                      |+.|+.. +.+|  .|++||+++++..+ +. .+...+....|+|+|+ .|+..+. ++  .|+.+|+.+++. ..+...
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~  329 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGAP-QRITWE  329 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence            9988865 3444  59999998876644 33 3445678899999998 4555443 44  455556665543 333321


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCCcceeecccccCCCCCCceeecccccc
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR  265 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  265 (375)
                                   ........|+|      +|+.++..+.+   ..|.+||+.++..                       
T Consensus       330 -------------~~~~~~~~~Sp------DG~~Ia~~~~~~g~~~I~~~dl~~g~~-----------------------  367 (429)
T PRK03629        330 -------------GSQNQDADVSS------DGKFMVMVSSNGGQQHIAKQDLATGGV-----------------------  367 (429)
T ss_pred             -------------CCCccCEEECC------CCCEEEEEEccCCCceEEEEECCCCCe-----------------------
Confidence                         23345678888      79888776543   3588888876421                       


Q ss_pred             eeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe---EEEEeCCCceeeeecchhhhhhhhcc
Q 017194          266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL---VKVWDCSRFQGVQTSINNDLLIKNIN  342 (375)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~  342 (375)
                                     +   .+... .......|+   |||++|+.++.++.   +.++++...          ....+.+
T Consensus       368 ---------------~---~Lt~~-~~~~~p~~S---pDG~~i~~~s~~~~~~~l~~~~~~G~----------~~~~l~~  415 (429)
T PRK03629        368 ---------------Q---VLTDT-FLDETPSIA---PNGTMVIYSSSQGMGSVLNLVSTDGR----------FKARLPA  415 (429)
T ss_pred             ---------------E---EeCCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCCC----------CeEECcc
Confidence                           1   11111 112356789   99999998887764   777787553          3344566


Q ss_pred             cccceeeeeecC
Q 017194          343 LNKKVNWLCTTP  354 (375)
Q Consensus       343 ~~~~v~~~~~~~  354 (375)
                      |.+.+...+|+|
T Consensus       416 ~~~~~~~p~Wsp  427 (429)
T PRK03629        416 TDGQVKFPAWSP  427 (429)
T ss_pred             CCCCcCCcccCC
Confidence            778888889987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=2e-16  Score=124.30  Aligned_cols=255  Identities=13%  Similarity=0.170  Sum_probs=185.3

Q ss_pred             cCccEEEEEEeCCCC--eEEEEcCCCeEEEEECCCCCccccc---ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEe
Q 017194           57 GNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHMPASWRPL---ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID  131 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  131 (375)
                      ....|..++|..+++  .++..+.+..+..+.+........+   ........+|..+... ++ .|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEe
Confidence            356788888876554  3444446667777776644332221   1222335566666543 33 677778899999999


Q ss_pred             CcCc----eeeeeEecCcccceeEEEEeeCCCcEEEEeecC--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194          132 IRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       132 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                      .+.+    ..+..+.  ....+..+.-++..++++++|+..  ..+.+||+...+.+..-+    ++....-...-+-++
T Consensus       132 ~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK----NvpnD~L~LrVPvW~  205 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK----NVPNDRLGLRVPVWI  205 (412)
T ss_pred             ccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc----CCCCccccceeeeee
Confidence            8843    2344444  235677888888888788889998  889999999875554433    222233333456778


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                      +.+.|.+.    .....|++++.-+.+++||.+.++                                       +++..
T Consensus       206 tdi~Fl~g----~~~~~fat~T~~hqvR~YDt~~qR---------------------------------------RPV~~  242 (412)
T KOG3881|consen  206 TDIRFLEG----SPNYKFATITRYHQVRLYDTRHQR---------------------------------------RPVAQ  242 (412)
T ss_pred             ccceecCC----CCCceEEEEecceeEEEecCcccC---------------------------------------cceeE
Confidence            89999881    127889999999999999999754                                       23334


Q ss_pred             ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh-hhcccccceeeeeecCCCCCcEEEee
Q 017194          286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      +.--..++.++...   |+++++++|..-|.+..||++.++         ++. .+.+..+.|.++..+| ...+|++++
T Consensus       243 fd~~E~~is~~~l~---p~gn~Iy~gn~~g~l~~FD~r~~k---------l~g~~~kg~tGsirsih~hp-~~~~las~G  309 (412)
T KOG3881|consen  243 FDFLENPISSTGLT---PSGNFIYTGNTKGQLAKFDLRGGK---------LLGCGLKGITGSIRSIHCHP-THPVLASCG  309 (412)
T ss_pred             eccccCcceeeeec---CCCcEEEEecccchhheecccCce---------eeccccCCccCCcceEEEcC-CCceEEeec
Confidence            44457789999999   999999999999999999999984         443 4788999999999999 888999999


Q ss_pred             CCCeEEEEecC
Q 017194          365 TSKVVKVYSIS  375 (375)
Q Consensus       365 ~dg~v~iw~~~  375 (375)
                      -|..|||+|++
T Consensus       310 LDRyvRIhD~k  320 (412)
T KOG3881|consen  310 LDRYVRIHDIK  320 (412)
T ss_pred             cceeEEEeecc
Confidence            99999999974

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.2e-17  Score=131.60  Aligned_cols=277  Identities=15%  Similarity=0.118  Sum_probs=196.4

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVK  128 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~  128 (375)
                      ...|..|.+.|..+.|+..|..|++++.|..|.+||+..++.  .+.-..+|...|....|-|.  .+.+++++.||.++
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            456778999999999999999999999999999999986543  33344567788888888883  46799999999999


Q ss_pred             EEeCcC-cee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194          129 IIDIRQ-HCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       129 iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                      +=.+.. +.+  ...+. .|.++|..++.-|+.++.|.+++.|+.+.-+|++.+.+...+.....+  .  .   ..-..
T Consensus       213 ~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~--~--~---~~v~L  284 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD--E--K---ERVGL  284 (559)
T ss_pred             eeeeccccceecceecc-cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC--C--c---cceee
Confidence            877653 222  34455 799999999999999888999999999999999988766555422000  0  0   01256


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                      ..++..|.     +...+++++.|-.+++||.+..........                            ...+..-.-
T Consensus       285 ~~Ia~~P~-----nt~~faVgG~dqf~RvYD~R~~~~e~~n~~----------------------------~~~f~p~hl  331 (559)
T KOG1334|consen  285 YTIAVDPR-----NTNEFAVGGSDQFARVYDQRRIDKEENNGV----------------------------LDKFCPHHL  331 (559)
T ss_pred             eeEecCCC-----CccccccCChhhhhhhhcccchhhccccch----------------------------hhhcCCccc
Confidence            78999985     667999999999999999986322110000                            000000001


Q ss_pred             ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee---ecchhhhh-hhhccccc--ceeeeeecCCCCCc
Q 017194          286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---TSINNDLL-IKNINLNK--KVNWLCTTPTESEN  359 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~-~~~~~~~~--~v~~~~~~~~~~~~  359 (375)
                      .....-.|++++|+   .++.-|+++-.|-.|+++.-.-+....   .......+ +.+.+|..  .|..+-|.-+..+|
T Consensus       332 ~~d~~v~ITgl~Ys---h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy  408 (559)
T KOG1334|consen  332 VEDDPVNITGLVYS---HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY  408 (559)
T ss_pred             cccCcccceeEEec---CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence            11234569999999   788777777778889999544332210   00001222 23677754  57788887668899


Q ss_pred             EEEeeCCCeEEEEe
Q 017194          360 LVVCDTSKVVKVYS  373 (375)
Q Consensus       360 l~s~~~dg~v~iw~  373 (375)
                      +++|+.-|.|.||+
T Consensus       409 VvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  409 VVSGSDCGHIFIWD  422 (559)
T ss_pred             EEecCccceEEEEe
Confidence            99999999999997

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=7.2e-15  Score=112.68  Aligned_cols=179  Identities=14%  Similarity=0.199  Sum_probs=137.9

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-CCcccccccccCCCcceeEEEEcCCCC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSS  116 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~  116 (375)
                      ..|.|||=....++.++.- ..+|.++.+.++  .|++.- .+.|+||...+ .+....+.+... +..+.+++-..+..
T Consensus        75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSF-NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTSNKS  149 (346)
T ss_pred             ceEEEEecccCcEEEEEEe-ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCCCce
Confidence            4799999777777777764 789999999864  455544 78999999874 344444444432 23344443333444


Q ss_pred             eEEEE-eCCCcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCe-EEEeeCCCCCcceEEecCCCCC
Q 017194          117 FLACA-DDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPEN  192 (375)
Q Consensus       117 ~l~~~-~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~  192 (375)
                      +||.- -.-|.|+|-|+...+.  ...+. +|.+.|.+++++-+|. ++|+++..|+ |+|||..+|+.+.++.-+.   
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~---  224 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGV---  224 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCC---
Confidence            55543 3569999999986655  46677 8999999999999998 8999999997 7899999999999998662   


Q ss_pred             CCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                              ....|.+++|+|      +..+|++++..|+|+||.++..
T Consensus       225 --------d~A~iy~iaFSp------~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  225 --------DRADIYCIAFSP------NSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             --------chheEEEEEeCC------CccEEEEEcCCCeEEEEEeecC
Confidence                    357899999999      8999999999999999999864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1.7e-15  Score=116.03  Aligned_cols=238  Identities=13%  Similarity=0.210  Sum_probs=160.7

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEE-EEeCC------CcEEEEeC
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDG------GDVKIIDI  132 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~iwd~  132 (375)
                      ...+++|+.|...+++|. |.-.+||+.+-   .+.......+.+.+.-+...-..++++ +|+.+      ..|.|||=
T Consensus         7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P---~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDP---FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEccCCceEEEEe-cCceEEEecCc---hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            344589999888777776 55589999873   222111111122222111122233444 34332      46999997


Q ss_pred             cCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeec
Q 017194          133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP  211 (375)
Q Consensus       133 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (375)
                      ...+++.++.  ...+|.++.+.++   .+++.- .+.|++|... +.+.+..++...           .|..+.++.-.
T Consensus        83 ~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~-----------NPkGlC~~~~~  145 (346)
T KOG2111|consen   83 LKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-----------NPKGLCSLCPT  145 (346)
T ss_pred             ccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeeccc-----------CCCceEeecCC
Confidence            7778888887  7889999999987   455554 5689999987 556666666431           23333333332


Q ss_pred             CCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194          212 DADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  290 (375)
Q Consensus       212 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
                      .      +..+||.- -.-|.|+|-|+...+.                                      .....+.+|.
T Consensus       146 ~------~k~~LafPg~k~GqvQi~dL~~~~~--------------------------------------~~p~~I~AH~  181 (346)
T KOG2111|consen  146 S------NKSLLAFPGFKTGQVQIVDLASTKP--------------------------------------NAPSIINAHD  181 (346)
T ss_pred             C------CceEEEcCCCccceEEEEEhhhcCc--------------------------------------CCceEEEccc
Confidence            2      33444443 3568999999985321                                      0123678999


Q ss_pred             ccEEEEEEeecCCCCcEEEEecCCCe-EEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCC
Q 017194          291 AAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSK  367 (375)
Q Consensus       291 ~~v~~~~~s~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg  367 (375)
                      ..|.+++.+   .+|..+||+|..|+ |||||..+++..+         .+.  .....|.+++|+| ++.+|+++|+-|
T Consensus       182 s~Iacv~Ln---~~Gt~vATaStkGTLIRIFdt~~g~~l~---------E~RRG~d~A~iy~iaFSp-~~s~LavsSdKg  248 (346)
T KOG2111|consen  182 SDIACVALN---LQGTLVATASTKGTLIRIFDTEDGTLLQ---------ELRRGVDRADIYCIAFSP-NSSWLAVSSDKG  248 (346)
T ss_pred             CceeEEEEc---CCccEEEEeccCcEEEEEEEcCCCcEee---------eeecCCchheEEEEEeCC-CccEEEEEcCCC
Confidence            999999999   99999999999997 8999999995432         222  2346799999999 999999999999


Q ss_pred             eEEEEecC
Q 017194          368 VVKVYSIS  375 (375)
Q Consensus       368 ~v~iw~~~  375 (375)
                      +|.|+.+.
T Consensus       249 TlHiF~l~  256 (346)
T KOG2111|consen  249 TLHIFSLR  256 (346)
T ss_pred             eEEEEEee
Confidence            99999863

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=7.4e-16  Score=132.57  Aligned_cols=205  Identities=10%  Similarity=0.090  Sum_probs=136.2

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeC---CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCC
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK   80 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~   80 (375)
                      +...+.+..+...+.+.+|+|| |+.|+..+   .+..|.+|++.+++... +......+....|+|||+.|+.. +.++
T Consensus       188 g~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        188 GYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             CCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCC
Confidence            4455667667788999999999 78777543   24579999998876433 22223345578999999988865 3344


Q ss_pred             --eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-C--cEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-G--DVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                        .|++||+++++.. .+   ..+...+....|+||++.|+..+.+ +  .|+++|+.+++. ..+. .+........|+
T Consensus       266 ~~~I~~~d~~tg~~~-~l---t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt-~~~~~~~~~~~S  339 (429)
T PRK03629        266 SLNLYVMDLASGQIR-QV---TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT-WEGSQNQDADVS  339 (429)
T ss_pred             CcEEEEEECCCCCEE-Ec---cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee-cCCCCccCEEEC
Confidence              6999999875432 22   2224567889999999988877654 3  455557766544 3343 344456678999


Q ss_pred             eCCCcEEEEee-cC--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc-
Q 017194          156 PWKPWEVISGG-LD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-  231 (375)
Q Consensus       156 ~~~~~~l~~~~-~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~-  231 (375)
                      |+|++ ++..+ .+  ..|.+||+.+++. ..+...              .......|+|      ||+.++.++.++. 
T Consensus       340 pDG~~-Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~--------------~~~~~p~~Sp------DG~~i~~~s~~~~~  397 (429)
T PRK03629        340 SDGKF-MVMVSSNGGQQHIAKQDLATGGV-QVLTDT--------------FLDETPSIAP------NGTMVIYSSSQGMG  397 (429)
T ss_pred             CCCCE-EEEEEccCCCceEEEEECCCCCe-EEeCCC--------------CCCCCceECC------CCCEEEEEEcCCCc
Confidence            99984 55443 33  3588899987753 333211              1223567888      8999999887764 


Q ss_pred             --EEEEeCCC
Q 017194          232 --VDVINIES  239 (375)
Q Consensus       232 --i~i~d~~~  239 (375)
                        +.++++..
T Consensus       398 ~~l~~~~~~G  407 (429)
T PRK03629        398 SVLNLVSTDG  407 (429)
T ss_pred             eEEEEEECCC
Confidence              66667653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=7.3e-16  Score=133.27  Aligned_cols=235  Identities=12%  Similarity=0.151  Sum_probs=153.1

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      ..|.+||... ...+.+..+...+.+.+|+|+|+.|+..+.+   ..|++||+.+++. ..+...   .+....+.|+||
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~---~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASF---RGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccC---CCCccCceECCC
Confidence            4699999864 4455566677889999999999999988743   4799999987653 233333   334557899999


Q ss_pred             CCeEEE-EeCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe--EEEeeCCCCCcceEEecCC
Q 017194          115 SSFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGL  189 (375)
Q Consensus       115 ~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~  189 (375)
                      |+.|+. .+.+|  .|++||+.+++.. .+. .+.......+|+|+|++++++...+|.  |+++|+.+++. ..+... 
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~-  334 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQ-  334 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecC-
Confidence            998764 44555  5999999887653 344 455556788999999843444434554  66677766553 333222 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---cEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                                  .......+|+|      +|+.++..+.++   .|.+||+.++...                       
T Consensus       335 ------------g~~~~~~~~Sp------DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-----------------------  373 (433)
T PRK04922        335 ------------GNYNARASVSP------DGKKIAMVHGSGGQYRIAVMDLSTGSVR-----------------------  373 (433)
T ss_pred             ------------CCCccCEEECC------CCCEEEEEECCCCceeEEEEECCCCCeE-----------------------
Confidence                        22344678998      799888776443   6899998764211                       


Q ss_pred             eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC---CeEEEEeCCCceeeeecchhhhhhhhccc
Q 017194          267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINL  343 (375)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  343 (375)
                                        .+. +........|+   |||++|+..+.+   +.|.++++...          ....+..+
T Consensus       374 ------------------~Lt-~~~~~~~p~~s---pdG~~i~~~s~~~g~~~L~~~~~~g~----------~~~~l~~~  421 (433)
T PRK04922        374 ------------------TLT-PGSLDESPSFA---PNGSMVLYATREGGRGVLAAVSTDGR----------VRQRLVSA  421 (433)
T ss_pred             ------------------ECC-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEEcccC
Confidence                              111 11123346788   899987766543   46888888653          22233344


Q ss_pred             ccceeeeeecC
Q 017194          344 NKKVNWLCTTP  354 (375)
Q Consensus       344 ~~~v~~~~~~~  354 (375)
                      .+.+...+|+|
T Consensus       422 ~g~~~~p~wsp  432 (433)
T PRK04922        422 DGEVREPAWSP  432 (433)
T ss_pred             CCCCCCCccCC
Confidence            55666777776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.2e-15  Score=131.35  Aligned_cols=235  Identities=14%  Similarity=0.138  Sum_probs=148.5

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      ..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++. ..+...   .+.+....|+||
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~---~g~~~~~~~SPD  250 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANF---KGSNSAPAWSPD  250 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecC---CCCccceEECCC
Confidence            457777764 44455555677889999999999999887653   3699999987653 233333   345668899999


Q ss_pred             CCeEEE-EeCCCcEEEEe--CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC--CCCCcceEEecCC
Q 017194          115 SSFLAC-ADDGGDVKIID--IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF--SKGRPNKIVNFGL  189 (375)
Q Consensus       115 ~~~l~~-~~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~  189 (375)
                      ++.|+. .+.+|...+|.  +..+. ...+. .+........|+|+|+.+++++..++...+|.+  ..++ ...+... 
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~-  326 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFT-  326 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecC-
Confidence            998874 56777766655  44443 44555 455556778999999854444444566666654  4333 2333222 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---cEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                                  ........|+|      +|++++..+.++   .|.+||+.++...                       
T Consensus       327 ------------g~~~~~~~~Sp------DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-----------------------  365 (427)
T PRK02889        327 ------------GSYNTSPRISP------DGKLLAYISRVGGAFKLYVQDLATGQVT-----------------------  365 (427)
T ss_pred             ------------CCCcCceEECC------CCCEEEEEEccCCcEEEEEEECCCCCeE-----------------------
Confidence                        12234567888      899998777654   5999998864211                       


Q ss_pred             eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC---eEEEEeCCCceeeeecchhhhhhhhccc
Q 017194          267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINL  343 (375)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~  343 (375)
                                        .+... .......|+   |||+.|+..+.++   .+.+.++..          .....+..+
T Consensus       366 ------------------~lt~~-~~~~~p~~s---pdg~~l~~~~~~~g~~~l~~~~~~g----------~~~~~l~~~  413 (427)
T PRK02889        366 ------------------ALTDT-TRDESPSFA---PNGRYILYATQQGGRSVLAAVSSDG----------RIKQRLSVQ  413 (427)
T ss_pred             ------------------EccCC-CCccCceEC---CCCCEEEEEEecCCCEEEEEEECCC----------CceEEeecC
Confidence                              11111 123456888   8999888776543   355556533          222233445


Q ss_pred             ccceeeeeecC
Q 017194          344 NKKVNWLCTTP  354 (375)
Q Consensus       344 ~~~v~~~~~~~  354 (375)
                      .+.+...+|+|
T Consensus       414 ~g~~~~p~wsp  424 (427)
T PRK02889        414 GGDVREPSWGP  424 (427)
T ss_pred             CCCCCCCccCC
Confidence            56677778877

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.72  E-value=3.3e-15  Score=115.67  Aligned_cols=254  Identities=15%  Similarity=0.178  Sum_probs=185.4

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc-cCceeeEe-eecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .++.++||.+.|+....-|. .+-+++.+.|.+++||--. .++.-..+ .....+++++.+.++...|+.+-..|++.-
T Consensus        16 ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            45678899999999888887 6789999999999999643 34432222 223678999999999999999999999988


Q ss_pred             EECCCC-CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +.+... +.....+.+..|...+..+.|+....++++.+.|..+.---.+.+..+..+.  .....+++.+.-.   +..
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~~---~~f  169 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDAL---YAF  169 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceeeE---EEE
Confidence            876532 2334556677789999999999998999999999887655555555544332  1222222222221   344


Q ss_pred             EeecCCeEEEeeCCC--CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          164 SGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      .|...|.|..-.+..  -.++.++. +            |...+.+++|.|      ..++|.+|..|..+.+||+...+
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~-~------------h~~~~~~l~Wd~------~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFN-G------------HTGEVTCLKWDP------GQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEc-C------------cccceEEEEEcC------CCcEEEeccccCceEEEeccCCc
Confidence            555566665554433  33444444 2            578899999998      68999999999999999998532


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                             ....++.+|...|..+...   +--+.+.+++.||.|.+|+
T Consensus       231 ---------------------------------------g~~~el~gh~~kV~~l~~~---~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  231 ---------------------------------------GTAYELQGHNDKVQALSYA---QHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             ---------------------------------------ceeeeeccchhhhhhhhhh---hhheeeeeccCCCeEEEEe
Confidence                                                   2334778899999998887   6778999999999999999


Q ss_pred             CCCcee
Q 017194          322 CSRFQG  327 (375)
Q Consensus       322 ~~~~~~  327 (375)
                      ++....
T Consensus       269 mn~~r~  274 (404)
T KOG1409|consen  269 MNVKRV  274 (404)
T ss_pred             ccceee
Confidence            987643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.4e-15  Score=117.13  Aligned_cols=283  Identities=11%  Similarity=0.063  Sum_probs=174.8

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      ++.-.+++....|+||+...|.+..-+-.|.+|.+.+.+.. .++..+..+..++|+|+|++.+.++........++..-
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            34456789999999994466777888899999999877643 33334566789999999999888876432222233223


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      +.+..++.+...+-..+.+.|+|||+.|++         ||---.-.+..+.  ..-.+..++|+|.++ +++.|+.|+.
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe--~~lG~k~v~wsP~~q-flavGsyD~~  233 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE--RGLGLKFVEWSPCNQ-FLAVGSYDQM  233 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee--eccceeEEEeccccc-eEEeeccchh
Confidence            345556666655677889999999987775         4321111111222  235688899999988 8999999999


Q ss_pred             EEEeeCCCCCcceEEe----cCC-------------------------CCC------------------------CCCCC
Q 017194          171 LVMWDFSKGRPNKIVN----FGL-------------------------PEN------------------------NGNAG  197 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~----~~~-------------------------~~~------------------------~~~~~  197 (375)
                      +++.+--+-+...++-    .+.                         ++.                        ...+.
T Consensus       234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD  313 (447)
T KOG4497|consen  234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD  313 (447)
T ss_pred             hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence            9886644332221111    000                         000                        00000


Q ss_pred             cccCCCceeEEeecCCccccCCCCEEEEEec--CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  275 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~  275 (375)
                      ..-....+.-++|++      |..++++-..  -+.+-+||++..                                   
T Consensus       314 ~pnPk~g~g~lafs~------Ds~y~aTrnd~~PnalW~Wdlq~l-----------------------------------  352 (447)
T KOG4497|consen  314 FPNPKCGAGKLAFSC------DSTYAATRNDKYPNALWLWDLQNL-----------------------------------  352 (447)
T ss_pred             CCCcccccceeeecC------CceEEeeecCCCCceEEEEechhh-----------------------------------
Confidence            000112234445554      4555544432  234556665532                                   


Q ss_pred             CcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCC
Q 017194          276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT  355 (375)
Q Consensus       276 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  355 (375)
                           + +..+-....+|....|.   |....|+.+.....+++|.......         + ...+..-.|..++|.- 
T Consensus       353 -----~-l~avLiQk~piraf~Wd---P~~prL~vctg~srLY~W~psg~~~---------V-~vP~~GF~i~~l~W~~-  412 (447)
T KOG4497|consen  353 -----K-LHAVLIQKHPIRAFEWD---PGRPRLVVCTGKSRLYFWAPSGPRV---------V-GVPKKGFNIQKLQWLQ-  412 (447)
T ss_pred             -----h-hhhhhhhccceeEEEeC---CCCceEEEEcCCceEEEEcCCCceE---------E-ecCCCCceeeeEEecC-
Confidence                 1 11222346789999999   7777777777777899999887532         2 2233335789999998 


Q ss_pred             CCCcEEEeeCCC
Q 017194          356 ESENLVVCDTSK  367 (375)
Q Consensus       356 ~~~~l~s~~~dg  367 (375)
                      +|+.++.++.|.
T Consensus       413 ~g~~i~l~~kDa  424 (447)
T KOG4497|consen  413 PGEFIVLCGKDA  424 (447)
T ss_pred             CCcEEEEEcCCc
Confidence            888999998885

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.71  E-value=5e-15  Score=114.76  Aligned_cols=275  Identities=12%  Similarity=0.161  Sum_probs=173.9

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-----eeeEeeec------------CccEEEEEEeCCCC--eEEE
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVG------------NGPVTSLCFKSGNE--DIIY   75 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~------------~~~v~~l~~~~~~~--~l~~   75 (375)
                      .+-|.++.|... |++||+|..+|.|.++.-+...     ....++.|            ...|..+.|.++++  .++.
T Consensus        25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            456889999998 9999999999999999754322     12333334            36789999988664  5677


Q ss_pred             EcCCCeEEEEECCCCCccc------------c-----cc---------------c-ccCCCcceeEEEEcCCCCeEEEEe
Q 017194           76 VSSGKEVKSFDVHMPASWR------------P-----LE---------------S-YNYNKEEINQIVCNPKSSFLACAD  122 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~~~~------------~-----~~---------------~-~~~~~~~v~~~~~~~~~~~l~~~~  122 (375)
                      .+.|.+|++|.+.......            .     +.               . -..|...|+++.++.|...++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            7889999999886422111            0     00               0 12477889999999999888887 


Q ss_pred             CCCcEEEEeCcCc-e--eeeeEecCc-----ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe--cCCCCC
Q 017194          123 DGGDVKIIDIRQH-C--LYKSLRAGH-----SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN--FGLPEN  192 (375)
Q Consensus       123 ~dg~i~iwd~~~~-~--~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~  192 (375)
                      .|-.|.+|+++-- +  .+-.++ .+     ..-|++..|+|....+|+-.+..|+|++-|++.....-...  +..|+.
T Consensus       183 DdLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             cceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence            5678999998732 1  122233 22     34678899999887789999999999999999543211100  011110


Q ss_pred             CCCCCccc--CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee
Q 017194          193 NGNAGQCY--NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME  270 (375)
Q Consensus       193 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~  270 (375)
                      .. ....+  --..|..+.|++      +|+++++-+. -+|++||+.....+..........                 
T Consensus       262 p~-~rsffseiIsSISDvKFs~------sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l-----------------  316 (433)
T KOG1354|consen  262 PS-SRSFFSEIISSISDVKFSH------SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL-----------------  316 (433)
T ss_pred             Cc-chhhHHHHhhhhhceEEcc------CCcEEEEecc-ceeEEEeccccCCcceEEeehHhH-----------------
Confidence            00 00000  114578889998      7999998765 489999997543222111000000                 


Q ss_pred             eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          271 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                            ...+.-+++-.. --.-..++|+   .++.+++||+..+..++++...+..
T Consensus       317 ------r~kLc~lYEnD~-IfdKFec~~s---g~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  317 ------RSKLCSLYENDA-IFDKFECSWS---GNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             ------HHHHHHHhhccc-hhheeEEEEc---CCcceEecccccceEEEecCCCCcc
Confidence                  000000000000 0122456788   7888999999999999999766543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=4.4e-15  Score=128.44  Aligned_cols=206  Identities=12%  Similarity=0.101  Sum_probs=137.7

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCC---CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d   79 (375)
                      .+...+.+..|...+.+.+|+|| ++.|+..+.   +..|.+||+.+++.. .+........+.+|+|+|+.|+. .+.+
T Consensus       192 ~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~  269 (433)
T PRK04922        192 DGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRD  269 (433)
T ss_pred             CCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCC
Confidence            34556778778888999999999 788887653   346999999887653 33333445567899999998764 3444


Q ss_pred             C--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCc--EEEEeCcCceeeeeEecCcccceeEEEE
Q 017194           80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        80 ~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      +  .|++||+.+++. ..+   ..+.......+|+||++.|+..+. +|.  |+++|+.+++... +. .+.......+|
T Consensus       270 g~~~Iy~~d~~~g~~-~~l---t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt-~~g~~~~~~~~  343 (433)
T PRK04922        270 GNPEIYVMDLGSRQL-TRL---TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT-FQGNYNARASV  343 (433)
T ss_pred             CCceEEEEECCCCCe-EEC---ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee-cCCCCccCEEE
Confidence            4  699999987643 222   223344567899999998887764 444  7777776665432 32 23344557899


Q ss_pred             eeCCCcEEEEee-cCC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC--
Q 017194          155 IPWKPWEVISGG-LDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--  229 (375)
Q Consensus       155 ~~~~~~~l~~~~-~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--  229 (375)
                      +|+|++ ++..+ .++  .|.+||+.+++.. .+..              ........|+|      ++++++..+.+  
T Consensus       344 SpDG~~-Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--------------~~~~~~p~~sp------dG~~i~~~s~~~g  401 (433)
T PRK04922        344 SPDGKK-IAMVHGSGGQYRIAVMDLSTGSVR-TLTP--------------GSLDESPSFAP------NGSMVLYATREGG  401 (433)
T ss_pred             CCCCCE-EEEEECCCCceeEEEEECCCCCeE-ECCC--------------CCCCCCceECC------CCCEEEEEEecCC
Confidence            999994 55443 332  6999999877643 3321              12334567888      89988777653  


Q ss_pred             -CcEEEEeCCC
Q 017194          230 -GVVDVINIES  239 (375)
Q Consensus       230 -g~i~i~d~~~  239 (375)
                       +.|.++++..
T Consensus       402 ~~~L~~~~~~g  412 (433)
T PRK04922        402 RGVLAAVSTDG  412 (433)
T ss_pred             ceEEEEEECCC
Confidence             3577777754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.1e-14  Score=126.11  Aligned_cols=174  Identities=14%  Similarity=0.169  Sum_probs=121.6

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---CCeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      ..|.++|.. +...+.+..|...+.+.+|+|||+.|+..+.   +..|++||+.+++. ..+..   +.+.+...+|+||
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~---~~g~~~~~~~SPD  256 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGN---FPGMTFAPRFSPD  256 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeec---CCCcccCcEECCC
Confidence            478889875 4445667778889999999999999988764   36899999987653 23332   3456778999999


Q ss_pred             CCeEE-EEeCCCc--EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee-cCC--eEEEeeCCCCCcceEEecC
Q 017194          115 SSFLA-CADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDS--KLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       115 ~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~~wd~~~~~~~~~~~~~  188 (375)
                      |+.|+ +.+.++.  |++||+.+++. ..+. .+........|+|+|++ ++..+ .+|  .|+++|+..++. ..+...
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt-~~~~~~~~~~~spDG~~-i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~  332 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT-DSPAIDTSPSYSPDGSQ-IVFESDRSGSPQLYVMNADGSNP-RRISFG  332 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCce-EEcc-CCCCccCceeEcCCCCE-EEEEECCCCCCeEEEEECCCCCe-EEeecC
Confidence            98876 4445554  78889887765 4455 45566778999999984 55444 333  688888775543 334322


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCC
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIES  239 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~  239 (375)
                                   ...+....|+|      +|+.++....+   ..|.+||+.+
T Consensus       333 -------------~~~~~~~~~Sp------dG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        333 -------------GGRYSTPVWSP------RGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             -------------CCcccCeEECC------CCCEEEEEEcCCCceEEEEEECCC
Confidence                         23456678988      79988876643   3577788754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.4e-14  Score=125.54  Aligned_cols=207  Identities=10%  Similarity=0.077  Sum_probs=141.8

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCC---CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d   79 (375)
                      .+...+.+..|.+.+.+.+|+|| ++.|+..+.   +..|.+||+.+++. ..+..+.+.+...+|+|+|+.|+. .+.+
T Consensus       190 dg~~~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~  267 (435)
T PRK05137        190 DGANVRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQG  267 (435)
T ss_pred             CCCCcEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecC
Confidence            34556778888899999999999 787776643   46899999988765 345555667788999999998764 4444


Q ss_pred             C--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194           80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        80 ~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      +  .|++||+.++.. ..+   ..+........|+||++.|+..+. +|  .|+++|+..++.. .+. .+...+....|
T Consensus       268 g~~~Iy~~d~~~~~~-~~L---t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-~~~~~~~~~~~  341 (435)
T PRK05137        268 GNTDIYTMDLRSGTT-TRL---TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS-FGGGRYSTPVW  341 (435)
T ss_pred             CCceEEEEECCCCce-EEc---cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee-cCCCcccCeEE
Confidence            4  578889886543 222   223455677899999999887763 33  6888898766543 343 34455677899


Q ss_pred             eeCCCcEEEEeec-C--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC--
Q 017194          155 IPWKPWEVISGGL-D--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--  229 (375)
Q Consensus       155 ~~~~~~~l~~~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--  229 (375)
                      +|+|+. ++.... .  ..|.+||+..+. ...+..              ...+....|+|      +|+.|+..+.+  
T Consensus       342 SpdG~~-ia~~~~~~~~~~i~~~d~~~~~-~~~lt~--------------~~~~~~p~~sp------DG~~i~~~~~~~~  399 (435)
T PRK05137        342 SPRGDL-IAFTKQGGGQFSIGVMKPDGSG-ERILTS--------------GFLVEGPTWAP------NGRVIMFFRQTPG  399 (435)
T ss_pred             CCCCCE-EEEEEcCCCceEEEEEECCCCc-eEeccC--------------CCCCCCCeECC------CCCEEEEEEccCC
Confidence            999994 555443 2  368888876443 333321              12356778888      79888776543  


Q ss_pred             ----CcEEEEeCCCc
Q 017194          230 ----GVVDVINIESE  240 (375)
Q Consensus       230 ----g~i~i~d~~~~  240 (375)
                          ..|.++|+...
T Consensus       400 ~~~~~~L~~~dl~g~  414 (435)
T PRK05137        400 SGGAPKLYTVDLTGR  414 (435)
T ss_pred             CCCcceEEEEECCCC
Confidence                25777787653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1e-14  Score=125.73  Aligned_cols=205  Identities=11%  Similarity=0.083  Sum_probs=131.5

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d   79 (375)
                      .+...+.+..+.+.+.+.+|+|| ++.|+..+.+   ..|.+||+.+++... +......+...+|+|||+.|+. .+.+
T Consensus       184 dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~  261 (427)
T PRK02889        184 DGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRD  261 (427)
T ss_pred             CCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC
Confidence            34555667778889999999999 7877766532   459999999887543 3333455678999999998874 5667


Q ss_pred             CeEEEEE--CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeC--cCceeeeeEecCcccceeEEEE
Q 017194           80 KEVKSFD--VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDI--RQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        80 ~~i~iwd--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      +...+|.  +.++. ...   +..+........|+|||+.|+..+. +|...+|.+  .+++. ..+. ..........|
T Consensus       262 g~~~Iy~~d~~~~~-~~~---lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt-~~g~~~~~~~~  335 (427)
T PRK02889        262 GNSQIYTVNADGSG-LRR---LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT-FTGSYNTSPRI  335 (427)
T ss_pred             CCceEEEEECCCCC-cEE---CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEe-cCCCCcCceEE
Confidence            7655555  44332 222   2223445667889999998876654 455555554  44443 2222 22333456789


Q ss_pred             eeCCCcEEEEeecCC---eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-
Q 017194          155 IPWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-  230 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-  230 (375)
                      +|+|+ .++..+.++   .|.+||+.+++.. .+..              ........|+|      +++.|+.++.++ 
T Consensus       336 SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~--------------~~~~~~p~~sp------dg~~l~~~~~~~g  393 (427)
T PRK02889        336 SPDGK-LLAYISRVGGAFKLYVQDLATGQVT-ALTD--------------TTRDESPSFAP------NGRYILYATQQGG  393 (427)
T ss_pred             CCCCC-EEEEEEccCCcEEEEEEECCCCCeE-EccC--------------CCCccCceECC------CCCEEEEEEecCC
Confidence            99999 465555443   6999999877643 2221              12235678888      798888877544 


Q ss_pred             --cEEEEeCC
Q 017194          231 --VVDVINIE  238 (375)
Q Consensus       231 --~i~i~d~~  238 (375)
                        .+.+.++.
T Consensus       394 ~~~l~~~~~~  403 (427)
T PRK02889        394 RSVLAAVSSD  403 (427)
T ss_pred             CEEEEEEECC
Confidence              34444553

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.69  E-value=1.1e-14  Score=110.47  Aligned_cols=273  Identities=11%  Similarity=0.061  Sum_probs=181.2

Q ss_pred             CCCcEEEEecccCceee--Ee-eecCccEEEEEEeC---CCC-eEEEEcCCCeEEEEECCCCCcccccccccCC---Ccc
Q 017194           36 EDGCICWFDLRSKDVQL--VT-DVGNGPVTSLCFKS---GNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYN---KEE  105 (375)
Q Consensus        36 ~d~~i~iw~~~~~~~~~--~~-~~~~~~v~~l~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~  105 (375)
                      .-|.+.+|++...+...  ++ ......+..+.|.-   +|. .++-+-..|.|.++..........+..+...   ...
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34678899987765432  22 22356677788853   444 4566677899999987643322222222211   123


Q ss_pred             eeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cc
Q 017194          106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PN  182 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~  182 (375)
                      ..++.|++.+..++++..+|.+.+-+......  ++.++ .|+.+++...|+...+.++.+|+.|+.+..||++..+ .+
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            45788999999999999999999776655543  44788 9999999999998887799999999999999999433 22


Q ss_pred             eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194          183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~  262 (375)
                      ..-            ...|...|.+|.-+|.     .+.++++|+.|-.|++||.++..++.                  
T Consensus       203 ~~n------------~kvH~~GV~SI~ss~~-----~~~~I~TGsYDe~i~~~DtRnm~kPl------------------  247 (339)
T KOG0280|consen  203 WHN------------SKVHTSGVVSIYSSPP-----KPTYIATGSYDECIRVLDTRNMGKPL------------------  247 (339)
T ss_pred             eec------------ceeeecceEEEecCCC-----CCceEEEeccccceeeeehhcccCcc------------------
Confidence            221            1125678888988875     78999999999999999999642221                  


Q ss_pred             ccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc
Q 017194          263 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN  342 (375)
Q Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  342 (375)
                                           ..- .-.+.|+.+..+|+. .+++|+++-.+| .+|-+.+.....    ....+.....
T Consensus       248 ---------------------~~~-~v~GGVWRi~~~p~~-~~~lL~~CMh~G-~ki~~~~~~~~e----~~~~~~s~~~  299 (339)
T KOG0280|consen  248 ---------------------FKA-KVGGGVWRIKHHPEI-FHRLLAACMHNG-AKILDSSDKVLE----FQIVLPSDKI  299 (339)
T ss_pred             ---------------------ccC-ccccceEEEEecchh-hhHHHHHHHhcC-ceEEEecccccc----hheeeecccc
Confidence                                 111 113789999998642 234455554444 777777765321    0013334556


Q ss_pred             cccceeeeeecCCCCCcEEEee-CCCeEE-EEe
Q 017194          343 LNKKVNWLCTTPTESENLVVCD-TSKVVK-VYS  373 (375)
Q Consensus       343 ~~~~v~~~~~~~~~~~~l~s~~-~dg~v~-iw~  373 (375)
                      |.+-+..-.|... ...|+||+ .|+.++ +|-
T Consensus       300 hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  300 HDSLCYGGDWDSK-DSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             ccceeeccccccc-cceeeeeeccccceeeeee
Confidence            7777777777653 34688876 677755 773

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.69  E-value=2.6e-15  Score=116.29  Aligned_cols=250  Identities=19%  Similarity=0.272  Sum_probs=191.1

Q ss_pred             eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC-CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           50 VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV-HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        50 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      .+..+++|.+.+++...-|..+-+++.+.|.++++|-- +.++.+..+....  ..+++++.+.++...|++|-.+|++.
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m--P~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM--PSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC--CCCceEeeeeccceEEEEEEecceEE
Confidence            46677889999999888888888999999999999964 4455555554443  67899999999999999999999999


Q ss_pred             EEeCc----CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCc
Q 017194          129 IIDIR----QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF  204 (375)
Q Consensus       129 iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (375)
                      -+.+.    ....++.+. .|...+..+-|+-... .+++.+.|..+.---.+.+..+..+.+.              ..
T Consensus        94 efs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--------------~~  157 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFE--------------TP  157 (404)
T ss_pred             EEEhhhhhhhcchhhhhh-hhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEee--------------cc
Confidence            88765    334455566 7999999999988777 5888888887766556666655544432              12


Q ss_pred             eeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee
Q 017194          205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY  284 (375)
Q Consensus       205 v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~  284 (375)
                      ...+.+.        -.+..+|...|.|.+..+.                                      .....++.
T Consensus       158 ~t~~~~d--------~~~~fvGd~~gqvt~lr~~--------------------------------------~~~~~~i~  191 (404)
T KOG1409|consen  158 ASALQFD--------ALYAFVGDHSGQITMLKLE--------------------------------------QNGCQLIT  191 (404)
T ss_pred             CCCCcee--------eEEEEecccccceEEEEEe--------------------------------------ecCCceEE
Confidence            2222222        1255666667777666554                                      22346777


Q ss_pred             eecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194          285 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       285 ~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      ++.+|...+.+++|.   +..+.|.+|..|..+.+||+.-.+        .....+.+|.+.|..+...+ --+.|++++
T Consensus       192 ~~~~h~~~~~~l~Wd---~~~~~LfSg~~d~~vi~wdigg~~--------g~~~el~gh~~kV~~l~~~~-~t~~l~S~~  259 (404)
T KOG1409|consen  192 TFNGHTGEVTCLKWD---PGQRLLFSGASDHSVIMWDIGGRK--------GTAYELQGHNDKVQALSYAQ-HTRQLISCG  259 (404)
T ss_pred             EEcCcccceEEEEEc---CCCcEEEeccccCceEEEeccCCc--------ceeeeeccchhhhhhhhhhh-hheeeeecc
Confidence            999999999999999   888999999999999999998875        33346678999999888777 567899999


Q ss_pred             CCCeEEEEecC
Q 017194          365 TSKVVKVYSIS  375 (375)
Q Consensus       365 ~dg~v~iw~~~  375 (375)
                      .||.|.+|+++
T Consensus       260 edg~i~~w~mn  270 (404)
T KOG1409|consen  260 EDGGIVVWNMN  270 (404)
T ss_pred             CCCeEEEEecc
Confidence            99999999974

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.69  E-value=1.3e-12  Score=109.59  Aligned_cols=274  Identities=16%  Similarity=0.198  Sum_probs=173.0

Q ss_pred             CcEEEEec--ccCce--eeEeeecCccEEEEEEeCCCCeEEEEcC----CCeEEEEECCCC-CcccccccccCCCcceeE
Q 017194           38 GCICWFDL--RSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS----GKEVKSFDVHMP-ASWRPLESYNYNKEEINQ  108 (375)
Q Consensus        38 ~~i~iw~~--~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~----d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~  108 (375)
                      +.|.+|++  ++++.  +.... ......-++++|++++|.++..    ++.|..|++... ..+..+............
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            67888888  33433  22222 3455677899999999988876    468999998764 344454444323455678


Q ss_pred             EEEcCCCCeEEEEe-CCCcEEEEeCcC-ceeee---eEec---------CcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194          109 IVCNPKSSFLACAD-DGGDVKIIDIRQ-HCLYK---SLRA---------GHSSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus       109 ~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~---~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      ++++|++++|+++. .+|.|.++++.. +....   .+..         .......++.++|++++++++.-....|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            99999999998887 589999999986 33322   2210         1123467899999999555554456689999


Q ss_pred             eCCCCCc-c---eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeeccccc
Q 017194          175 DFSKGRP-N---KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST  249 (375)
Q Consensus       175 d~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  249 (375)
                      ++..... +   ..+...            .....+.++|+|      +++++++.. .++.|.+|++....-..     
T Consensus       172 ~~~~~~~~l~~~~~~~~~------------~G~GPRh~~f~p------dg~~~Yv~~e~s~~v~v~~~~~~~g~~-----  228 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVP------------PGSGPRHLAFSP------DGKYAYVVNELSNTVSVFDYDPSDGSL-----  228 (345)
T ss_dssp             EE-TTS-TEEEEEEEECS------------TTSSEEEEEE-T------TSSEEEEEETTTTEEEEEEEETTTTEE-----
T ss_pred             EEeCCCceEEEeeccccc------------cCCCCcEEEEcC------CcCEEEEecCCCCcEEEEeecccCCce-----
Confidence            9987652 2   223322            346678999999      788877665 56789999887211000     


Q ss_pred             CCCCCCceeecccccceeeeeeeecCCcceeEeeeeec---CCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeCCC-
Q 017194          250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSR-  324 (375)
Q Consensus       250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~~~-  324 (375)
                                                  ...+.+..+.   ........++++   |||++|.++. .++.|.+|++.. 
T Consensus       229 ----------------------------~~~~~~~~~~~~~~~~~~~~~i~is---pdg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  229 ----------------------------TEIQTISTLPEGFTGENAPAEIAIS---PDGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             ----------------------------EEEEEEESCETTSCSSSSEEEEEE----TTSSEEEEEECTTTEEEEEEECTT
T ss_pred             ----------------------------eEEEEeeeccccccccCCceeEEEe---cCCCEEEEEeccCCEEEEEEEecC
Confidence                                        0011111111   112367889999   9999887765 477899999943 


Q ss_pred             -ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194          325 -FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  374 (375)
Q Consensus       325 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~  374 (375)
                       ++.       ..+............++++| +|++|+++. .++.|.+|++
T Consensus       278 ~g~l-------~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  278 TGTL-------TLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             TTTE-------EEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEE
T ss_pred             CCce-------EEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEE
Confidence             221       12222222334478899999 999988876 6678999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=1.3e-14  Score=110.25  Aligned_cols=156  Identities=19%  Similarity=0.283  Sum_probs=111.5

Q ss_pred             eEEEEecCCCCEEEEeCC----------CCcEEEEeccc-CceeeEeee-cCccEEEEEEeCCCCeEEEE--cCCCeEEE
Q 017194           19 TCCIASRDRPGFVASSGE----------DGCICWFDLRS-KDVQLVTDV-GNGPVTSLCFKSGNEDIIYV--SSGKEVKS   84 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~----------d~~i~iw~~~~-~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~--~~d~~i~i   84 (375)
                      ..+.|+|+ |++|+.-..          -+...||.++. +.....+.. ..++|.+++|+|+|+.+++.  ..++.|.+
T Consensus         9 ~~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            35789998 666553322          13456666532 233444443 34579999999999987655  34679999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC---CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ||++    ...+..+.  ...+..+.|+|+|++|++++.   .|.|.+||+++.+.+..+.  |. .+..++|+|+|+ +
T Consensus        88 yd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr-~  157 (194)
T PF08662_consen   88 YDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGR-Y  157 (194)
T ss_pred             EcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCC-E
Confidence            9997    23333332  467889999999999998874   4679999999888887776  44 478999999999 5


Q ss_pred             EEEeec------CCeEEEeeCCCCCcceEEe
Q 017194          162 VISGGL------DSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       162 l~~~~~------d~~i~~wd~~~~~~~~~~~  186 (375)
                      |+++..      |..++||+.. |+.+....
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            666653      7889999985 66665554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=2.4e-13  Score=112.20  Aligned_cols=315  Identities=12%  Similarity=0.096  Sum_probs=199.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc-----CC-----CeEEEE
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-----SG-----KEVKSF   85 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-----~d-----~~i~iw   85 (375)
                      .+++..+++++ |+++|.+.. ..++|++..++..+.+...  ..+.++.|+|-+.+|.+--     .+     -.+.+|
T Consensus        35 ~~~~v~~~S~~-G~lfA~~~~-~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   35 RPCNVFAYSNN-GRLFAYSDN-QVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CcceeEEEcCC-CcEEEEEcC-CeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            44667788887 888887665 5899999988864444432  3889999999999886621     12     367899


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC-cEEEE
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP-WEVIS  164 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~  164 (375)
                      +++++.....+..-  .... ++..|++|..+.+-- ..+.+++|++...+.+..-  -|...++.+.++|... ..+++
T Consensus       111 ~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAv  184 (566)
T KOG2315|consen  111 NVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAV  184 (566)
T ss_pred             eeccceehhheehh--hhcC-cccccccchhhhhhh-hcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEE
Confidence            99974322222221  1222 588899887654332 4478999999875443332  3677899999999843 33443


Q ss_pred             -----eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-----------
Q 017194          165 -----GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-----------  228 (375)
Q Consensus       165 -----~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-----------  228 (375)
                           .+.-+.|++|.......-..+.          ...+....--.+.|++.     ...+|+.++.           
T Consensus       185 yvPe~kGaPa~vri~~~~~~~~~~~~a----------~ksFFkadkvqm~WN~~-----gt~LLvLastdVDktn~SYYG  249 (566)
T KOG2315|consen  185 YVPEKKGAPASVRIYKYPEEGQHQPVA----------NKSFFKADKVQMKWNKL-----GTALLVLASTDVDKTNASYYG  249 (566)
T ss_pred             EccCCCCCCcEEEEeccccccccchhh----------hccccccceeEEEeccC-----CceEEEEEEEeecCCCccccc
Confidence                 3455689999876322211111          00001122234556552     2223333332           


Q ss_pred             CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC----cceeEeeeeecCCCccEEEEEEeecCCC
Q 017194          229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGER  304 (375)
Q Consensus       229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~  304 (375)
                      +..++++++.....  ........++..+.|+|+|+.++++..+....    +.....+..+  ..++-+++-|+   |.
T Consensus       250 Eq~Lyll~t~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fn---p~  322 (566)
T KOG2315|consen  250 EQTLYLLATQGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFN---PH  322 (566)
T ss_pred             cceEEEEEecCceE--EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccceEEC---CC
Confidence            34688888773322  23334457899999999999988765443322    1122333333  36777889999   89


Q ss_pred             CcEEEEecC---CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee------CCCeEEEEec
Q 017194          305 GKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD------TSKVVKVYSI  374 (375)
Q Consensus       305 ~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~v~iw~~  374 (375)
                      |++|+.+|.   .|.|-|||+.+.         +++..+..-  .-+-+.|+| ||++|+|+.      .|+.++||++
T Consensus       323 g~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a~--~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  323 GNIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKAA--NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             CCEEEEeecCCCCCceEEEeccch---------hhccccccC--CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence            999988776   478999999997         555444333  234578999 999999986      4788999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=2.6e-14  Score=108.52  Aligned_cols=150  Identities=13%  Similarity=0.224  Sum_probs=108.4

Q ss_pred             EEEEEeCCCCeEEEEcC----------CCeEEEEECCCCCcccccccccC-CCcceeEEEEcCCCCeEEEE--eCCCcEE
Q 017194           62 TSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACA--DDGGDVK  128 (375)
Q Consensus        62 ~~l~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~  128 (375)
                      ..+.|+|+|++|+.-..          -+...+|.++....  ....+.. ..++|.+++|+|+++.+++.  ..++.|.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            45789999987765443          13456666543221  2222211 24579999999999987654  3567999


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec---CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                      +||++ ++.+..+.   ...++.+.|+|+|+ ++++++.   .|.|.+||.++.+.+...+.               ..+
T Consensus        87 lyd~~-~~~i~~~~---~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------------~~~  146 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG---TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------------SDA  146 (194)
T ss_pred             EEcCc-ccEeEeec---CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeecccc---------------CcE
Confidence            99996 66666664   45778999999999 6777653   46799999998877766652               357


Q ss_pred             eEEeecCCccccCCCCEEEEEec------CCcEEEEeCCC
Q 017194          206 HAIAIPDADMLDKTNKICVVAKG------DGVVDVINIES  239 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~  239 (375)
                      ..++|+|      +|++++++..      |+.++||+...
T Consensus       147 t~~~WsP------dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  147 TDVEWSP------DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEcC------CCCEEEEEEeccceeccccEEEEEecC
Confidence            8999999      8999999874      78899999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=2.7e-12  Score=107.65  Aligned_cols=254  Identities=18%  Similarity=0.257  Sum_probs=164.5

Q ss_pred             ceeEEEEecCCCCEEEEeCC----CCcEEEEecccC--c--eeeEeeecCccEEEEEEeCCCCeEEEEcC-CCeEEEEEC
Q 017194           17 TATCCIASRDRPGFVASSGE----DGCICWFDLRSK--D--VQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDV   87 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~----d~~i~iw~~~~~--~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd~   87 (375)
                      ...-++++|+ +++|.+...    ++.|..|.+...  +  .+............++++|++++|+++.. +|.+.++++
T Consensus        38 ~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   38 NPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            3455888998 777777655    578999998764  2  23333334556678999999999998875 789999999


Q ss_pred             CCCCccccc-cccc----------CCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCce--e--eeeEecCcccceeE
Q 017194           88 HMPASWRPL-ESYN----------YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHC--L--YKSLRAGHSSICSS  151 (375)
Q Consensus        88 ~~~~~~~~~-~~~~----------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~  151 (375)
                      .....+... ....          .......++.++|+++++++.. ....|.+|++....  .  ...+........+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            864222222 1110          1134567899999999988765 34579999987654  2  22333234567899


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCC--CCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFS--KGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      +.|+|++++++++...++.|.++++.  .++.  +..+... |.      ..........|+++|      ++++|+++.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~-~~------~~~~~~~~~~i~isp------dg~~lyvsn  263 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL-PE------GFTGENAPAEIAISP------DGRFLYVSN  263 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC-ET------TSCSSSSEEEEEE-T------TSSEEEEEE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec-cc------cccccCCceeEEEec------CCCEEEEEe
Confidence            99999999766777788999999998  3322  2222211 00      000113678899999      899888876


Q ss_pred             -cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          228 -GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       228 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                       ..+.|.+|++...                                    ...++.+..+.......+.++++   |+|+
T Consensus       264 r~~~sI~vf~~d~~------------------------------------~g~l~~~~~~~~~G~~Pr~~~~s---~~g~  304 (345)
T PF10282_consen  264 RGSNSISVFDLDPA------------------------------------TGTLTLVQTVPTGGKFPRHFAFS---PDGR  304 (345)
T ss_dssp             CTTTEEEEEEECTT------------------------------------TTTEEEEEEEEESSSSEEEEEE----TTSS
T ss_pred             ccCCEEEEEEEecC------------------------------------CCceEEEEEEeCCCCCccEEEEe---CCCC
Confidence             5678999999531                                    11123333333334457899999   9999


Q ss_pred             EEEEec-CCCeEEEEeCC
Q 017194          307 YLISGG-NDKLVKVWDCS  323 (375)
Q Consensus       307 ~l~s~~-~dg~i~iwd~~  323 (375)
                      +|+++. .++.|.+|++.
T Consensus       305 ~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  305 YLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEETTTTEEEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEe
Confidence            988776 56789999774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.63  E-value=2.3e-13  Score=118.15  Aligned_cols=204  Identities=13%  Similarity=0.123  Sum_probs=136.7

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCC
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK   80 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~   80 (375)
                      +...+.+..+...+.+.+|+|+ +++|+.+..+   ..|.+||+.+++... +..+...+.+++|+|+++.|+.. +.++
T Consensus       179 g~~~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       179 GANPQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             CCCCEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCC
Confidence            4556677777778999999999 7888766543   479999998876533 33455667789999999987654 4333


Q ss_pred             --eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-C--cEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-G--DVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                        .|++||+.++.. ..+.   .+........|+|+++.|+..+.. +  .|+++|+.+++.. .+. .+......+.|+
T Consensus       257 ~~~i~~~d~~~~~~-~~l~---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~~~~~~~~s  330 (417)
T TIGR02800       257 NPDIYVMDLDGKQL-TRLT---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGGYNASPSWS  330 (417)
T ss_pred             CccEEEEECCCCCE-EECC---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCCCccCeEEC
Confidence              688999886543 2222   223445567899999988776543 3  5888888766543 344 355667788999


Q ss_pred             eCCCcEEEEeecCC---eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC--
Q 017194          156 PWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--  230 (375)
Q Consensus       156 ~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg--  230 (375)
                      |+++ .++.++.++   .|.+||+.++.. ..+..              ........|+|      +++.|+..+.++  
T Consensus       331 pdg~-~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~--------------~~~~~~p~~sp------dg~~l~~~~~~~~~  388 (417)
T TIGR02800       331 PDGD-LIAFVHREGGGFNIAVMDLDGGGE-RVLTD--------------TGLDESPSFAP------NGRMILYATTRGGR  388 (417)
T ss_pred             CCCC-EEEEEEccCCceEEEEEeCCCCCe-EEccC--------------CCCCCCceECC------CCCEEEEEEeCCCc
Confidence            9998 566666555   788999887543 22221              11223457887      788887777654  


Q ss_pred             -cEEEEeCC
Q 017194          231 -VVDVINIE  238 (375)
Q Consensus       231 -~i~i~d~~  238 (375)
                       .+.+.+..
T Consensus       389 ~~l~~~~~~  397 (417)
T TIGR02800       389 GVLGLVSTD  397 (417)
T ss_pred             EEEEEEECC
Confidence             34555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.62  E-value=1.6e-13  Score=104.21  Aligned_cols=252  Identities=14%  Similarity=0.080  Sum_probs=172.2

Q ss_pred             CCceeEEEEec--CCCC-EEEEeCCCCcEEEEecccCceeeEeeec---C---ccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194           15 KATATCCIASR--DRPG-FVASSGEDGCICWFDLRSKDVQLVTDVG---N---GPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        15 ~~~i~~~~~~~--~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~---~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ++.+..|.|..  .++. .++-+..+|.|.++.....+....+++-   .   ....++.|++.+..++++-.+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34566666652  3345 5677788899999987655443333321   1   124567889999999999889998855


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCc-Cceeeee-EecCcccceeEEEEeeCCCcEE
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIR-QHCLYKS-LRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      +.... .++..+..+.|+-++....|+.. .+.+++|++|+.+..||++ .++.+.. .+ -|...|.+|.-+|..+..+
T Consensus       149 ~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k-vH~~GV~SI~ss~~~~~~I  226 (339)
T KOG0280|consen  149 YETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK-VHTSGVVSIYSSPPKPTYI  226 (339)
T ss_pred             eccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce-eeecceEEEecCCCCCceE
Confidence            54422 35666788889999999999874 4688999999999999998 3333333 34 6888999999998877789


Q ss_pred             EEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          163 ISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      ++|+.|-.|++||.+ -++++..-..+              +.|..+..+|.     ....+..++.-+-.+|.+...+.
T Consensus       227 ~TGsYDe~i~~~DtRnm~kPl~~~~v~--------------GGVWRi~~~p~-----~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  227 ATGSYDECIRVLDTRNMGKPLFKAKVG--------------GGVWRIKHHPE-----IFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             EEeccccceeeeehhcccCccccCccc--------------cceEEEEecch-----hhhHHHHHHHhcCceEEEecccc
Confidence            999999999999999 46776665533              78999999995     33333444444446676666432


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEE-E
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVK-V  319 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~-i  319 (375)
                      ...                                   .......+.|.+-...-.|.   ....+|||++ .|+.++ +
T Consensus       288 ~e~-----------------------------------~~~~~s~~~hdSl~YG~DWd---~~~~~lATCsFYDk~~~~~  329 (339)
T KOG0280|consen  288 LEF-----------------------------------QIVLPSDKIHDSLCYGGDWD---SKDSFLATCSFYDKKIRQL  329 (339)
T ss_pred             cch-----------------------------------heeeeccccccceeeccccc---cccceeeeeeccccceeee
Confidence            110                                   01233555666666666775   4455788875 477755 7


Q ss_pred             EeCCCc
Q 017194          320 WDCSRF  325 (375)
Q Consensus       320 wd~~~~  325 (375)
                      |-.-++
T Consensus       330 Wl~~t~  335 (339)
T KOG0280|consen  330 WLHITG  335 (339)
T ss_pred             eeeccC
Confidence            765544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=9.5e-14  Score=114.87  Aligned_cols=243  Identities=12%  Similarity=0.163  Sum_probs=163.6

Q ss_pred             cCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCcccccccccCCCcc-eeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194           57 GNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYNYNKEE-INQIVCNPKSSFLACADDGGDVKIIDIRQ  134 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (375)
                      +...-+.|..+|||+++++ |...-.|++||+..-. ++.-..+   ... |.-.-.+.|-..++.-..|.+|.+..- .
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhl---Dae~V~feiLsDD~SK~v~L~~DR~IefHak-~  124 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHL---DAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-Y  124 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecc---cccceeEEEeccchhhheEeecCceeeehhh-c
Confidence            5677788999999998655 5556799999997421 1211222   233 333344445555666667777766542 2


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD  214 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (375)
                      |.. ..++  -...-.+|+++.-.. -|..++....|+-+++..|..+..+...             ...++++.+++  
T Consensus       125 G~h-y~~R--IP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~-------------~~~lN~v~in~--  185 (703)
T KOG2321|consen  125 GRH-YRTR--IPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFLNPFETD-------------SGELNVVSINE--  185 (703)
T ss_pred             Cee-eeee--cCcCCccccccCCCc-cEEEeecCcceEEEEccccccccccccc-------------cccceeeeecC--
Confidence            221 1121  123446677765444 2555555668999999999998888754             47899999999  


Q ss_pred             cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-----
Q 017194          215 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-----  289 (375)
Q Consensus       215 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----  289 (375)
                          -..+|++|+.+|.+.+||.++......+.                                  ....+..|     
T Consensus       186 ----~hgLla~Gt~~g~VEfwDpR~ksrv~~l~----------------------------------~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  186 ----EHGLLACGTEDGVVEFWDPRDKSRVGTLD----------------------------------AASSVNSHPGGDA  227 (703)
T ss_pred             ----ccceEEecccCceEEEecchhhhhheeee----------------------------------cccccCCCccccc
Confidence                58899999999999999999753322211                                  11122233     


Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC-cEEEeeCCCe
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCDTSKV  368 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~  368 (375)
                      ...|+++.|+   .+|-.+++|..+|.+.|||++..+        +++..-.+..-+|..+.|.+.+++ .++|. ....
T Consensus       228 ~~svTal~F~---d~gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~  295 (703)
T KOG2321|consen  228 APSVTALKFR---DDGLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI  295 (703)
T ss_pred             cCcceEEEec---CCceeEEeeccCCcEEEEEcccCC--------ceeecccCCccceeeecccccCCCceEEec-chHH
Confidence            2359999999   789999999999999999999985        444455556668899999875443 34444 4567


Q ss_pred             EEEEe
Q 017194          369 VKVYS  373 (375)
Q Consensus       369 v~iw~  373 (375)
                      ++|||
T Consensus       296 ~kiWd  300 (703)
T KOG2321|consen  296 LKIWD  300 (703)
T ss_pred             hhhcc
Confidence            89997

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.61  E-value=4.8e-13  Score=116.16  Aligned_cols=176  Identities=15%  Similarity=0.198  Sum_probs=119.8

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      ..|.++|..... .+.+..+...+...+|+|+|++|+.+..+   ..|++||+.+++. ..+..   +...+..++|+||
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~---~~~~~~~~~~spD  244 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKVAS---FPGMNGAPAFSPD  244 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEeec---CCCCccceEECCC
Confidence            458888876443 45555567788999999999999987654   4899999987643 22222   2455667899999


Q ss_pred             CCeEEEE-eCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCC
Q 017194          115 SSFLACA-DDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGL  189 (375)
Q Consensus       115 ~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~  189 (375)
                      ++.|+.. +.++  .|++||+.+++.. .+. .+........|+|++++++++...++  .|+++|+.+++. ..+... 
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~-  320 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR-  320 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEE-ECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-
Confidence            9877654 4443  5899998876543 333 34445567789999984334443333  688888876653 333322 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---cEEEEeCCCc
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESE  240 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~  240 (375)
                                  ........|+|      ++++++.++.++   .|.+||+.++
T Consensus       321 ------------~~~~~~~~~sp------dg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       321 ------------GGYNASPSWSP------DGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             ------------CCCccCeEECC------CCCEEEEEEccCCceEEEEEeCCCC
Confidence                        24456778888      799998888765   7888888763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=2.5e-12  Score=106.22  Aligned_cols=314  Identities=11%  Similarity=0.040  Sum_probs=201.0

Q ss_pred             eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-----------CCeEEEEEC
Q 017194           19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-----------GKEVKSFDV   87 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----------d~~i~iwd~   87 (375)
                      +-+.|||. |.+|+|-...| |.+|--++...++.+. | ..|.-+.|||..++|++-+.           ...++|||+
T Consensus       214 tyv~wSP~-GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  214 TYVRWSPK-GTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeEEecCC-ceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            45789999 99999998877 9999877666666665 3 35788999999999999763           258999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .+|...+.+..+......-.-+.||.|++++|.-.. ..|.||+..+..++..-. -.-..|....|+|.+. +||--..
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~-llAYwtp  366 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSN-LLAYWTP  366 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcc-eEEEEcc
Confidence            999877776665443333445789999999998766 569999976643332111 2245788899999986 5664332


Q ss_pred             -----CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec----------CCcE
Q 017194          168 -----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------DGVV  232 (375)
Q Consensus       168 -----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----------dg~i  232 (375)
                           -..+.+-.+.+++.++...+.             .-.-..+.|-.      +|.+|++--.          -..+
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlf-------------nVsDckLhWQk------~gdyLcvkvdR~tK~~~~g~f~n~  427 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLF-------------NVSDCKLHWQK------SGDYLCVKVDRHTKSKVKGQFSNL  427 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccce-------------eeeccEEEecc------CCcEEEEEEEeeccccccceEeeE
Confidence                 234566666666555544322             11112334433      5777665321          1235


Q ss_pred             EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC----------cceeEeeeeecCCCccEEEEEEeecC
Q 017194          233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----------GKRLHLDYSVGGHTAAASCVAFSMFG  302 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~  302 (375)
                      .|+.++....+.. ..+....+-..++-|.|..+++........          .....++..+.  ....+.+.|+   
T Consensus       428 eIfrireKdIpve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfws---  501 (698)
T KOG2314|consen  428 EIFRIREKDIPVE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWS---  501 (698)
T ss_pred             EEEEeeccCCCce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEc---
Confidence            5566554332221 122234556678889999888744333322          22223333333  2456789999   


Q ss_pred             CCCcEEEEe---cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC------CCeEEEEe
Q 017194          303 ERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT------SKVVKVYS  373 (375)
Q Consensus       303 ~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~v~iw~  373 (375)
                      |.|++++.+   |..|.+.++|....         .+...-..-....+.+.|.| .|+|+++++.      |..-++|+
T Consensus       502 PkG~fvvva~l~s~~g~l~F~D~~~a---------~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~t  571 (698)
T KOG2314|consen  502 PKGRFVVVAALVSRRGDLEFYDTDYA---------DLKDTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT  571 (698)
T ss_pred             CCCcEEEEEEecccccceEEEecchh---------hhhhccCccccccccceECC-CCCEEEEeeehhhhccccceEEEE
Confidence            999998875   45789999999863         22222222223457789999 9999999874      44456665


Q ss_pred             c
Q 017194          374 I  374 (375)
Q Consensus       374 ~  374 (375)
                      +
T Consensus       572 f  572 (698)
T KOG2314|consen  572 F  572 (698)
T ss_pred             e
Confidence            4

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=6.4e-13  Score=115.45  Aligned_cols=207  Identities=12%  Similarity=0.091  Sum_probs=132.8

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d   79 (375)
                      .+...+.+..+...+....|+|| ++.|+..+.+   ..|.+|++.+++... +....+.+....|+|+|+.|+.. ..+
T Consensus       187 ~g~~~~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~  264 (430)
T PRK00178        187 DGARAVTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKD  264 (430)
T ss_pred             CCCCceEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccC
Confidence            34556677778888999999999 7777665432   368999998886533 33334455678999999988754 344


Q ss_pred             C--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194           80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        80 ~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      +  .|++||+.+++. ..+.   .+........|+||++.|+..+. +|  .|+++|+.+++......  .........|
T Consensus       265 g~~~Iy~~d~~~~~~-~~lt---~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~~~  338 (430)
T PRK00178        265 GNPEIYVMDLASRQL-SRVT---NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARPRL  338 (430)
T ss_pred             CCceEEEEECCCCCe-EEcc---cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccceEE
Confidence            4  688889987543 2222   23445667899999998876653 33  57788887776433222  2223345789


Q ss_pred             eeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---
Q 017194          155 IPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---  229 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---  229 (375)
                      +|++++++++...++  .|.+||+.+++. ..+...              .......|+|      +|+.++..+.+   
T Consensus       339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~--------------~~~~~p~~sp------dg~~i~~~~~~~g~  397 (430)
T PRK00178        339 SADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT--------------SLDESPSVAP------NGTMLIYATRQQGR  397 (430)
T ss_pred             CCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC--------------CCCCCceECC------CCCEEEEEEecCCc
Confidence            999995434433333  588899887654 333211              1122447888      78888877654   


Q ss_pred             CcEEEEeCCC
Q 017194          230 GVVDVINIES  239 (375)
Q Consensus       230 g~i~i~d~~~  239 (375)
                      ..|.++++..
T Consensus       398 ~~l~~~~~~g  407 (430)
T PRK00178        398 GVLMLVSING  407 (430)
T ss_pred             eEEEEEECCC
Confidence            2466666653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=5.2e-13  Score=116.00  Aligned_cols=175  Identities=14%  Similarity=0.163  Sum_probs=117.4

Q ss_pred             cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194           39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS  115 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  115 (375)
                      .|.++|.+.+. .+.+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++. +.+...   .+.+....|+|||
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~---~g~~~~~~~SpDG  254 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNF---EGLNGAPAWSPDG  254 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCC---CCCcCCeEECCCC
Confidence            47778877544 45555677889999999999999887644   3799999987653 333333   3345578999999


Q ss_pred             CeEEE-EeCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCC
Q 017194          116 SFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLP  190 (375)
Q Consensus       116 ~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~  190 (375)
                      +.|+. ...+|  .|++||+.+++.. .+. .+........|+|+++.++++...++  .|+++|+.+++. ..+...  
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~--  329 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFV--  329 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC--
Confidence            98874 44444  5888899877653 344 45556677899999985444444443  577778877663 333222  


Q ss_pred             CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-C--cEEEEeCCCc
Q 017194          191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-G--VVDVINIESE  240 (375)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~  240 (375)
                                 ........|+|      +++.++..+.+ +  .|.++|+.++
T Consensus       330 -----------~~~~~~~~~Sp------dg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        330 -----------GNYNARPRLSA------DGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             -----------CCCccceEECC------CCCEEEEEEccCCceEEEEEECCCC
Confidence                       12233467888      78888877643 3  5788888764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=1.6e-13  Score=121.16  Aligned_cols=270  Identities=14%  Similarity=0.114  Sum_probs=180.4

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe------eecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT------DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      |-+++++.++-.+   +|+.|.. -.|.+||+.++..+..+      ..|...-.-.   -.+.+++++..-+.+..=+.
T Consensus         6 ~~~~l~~~~~~~~---~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~   78 (967)
T KOG0974|consen    6 SLGPLNLPQLVSD---YLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEA   78 (967)
T ss_pred             ccccccchhhccc---eeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecch
Confidence            3355666665443   4554433 35999999988764433      2331000000   11234555554443333222


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc--eeEEE---EeeCCCcEE
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI--CSSVQ---FIPWKPWEV  162 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~---~~~~~~~~l  162 (375)
                      .    ...+..+   ...|....+..+...++.++.+..+.+||...+.....+.  +...  ..++.   ++++. .++
T Consensus        79 ~----~~~~~~~---s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~-~~i  148 (967)
T KOG0974|consen   79 S----NQIIERF---SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEE-LYI  148 (967)
T ss_pred             h----hhhhhhc---cccccccchhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcE-EEE
Confidence            2    1222222   3344445566677889999999999999998887776665  3222  22222   23333 268


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ++|+.-+.|.+|+....+....+ .+            |.+.+.++.++.      +|+++++.+.|.++++|++.+.+.
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l-~G------------HeG~iF~i~~s~------dg~~i~s~SdDRsiRlW~i~s~~~  209 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRL-KG------------HEGSIFSIVTSL------DGRYIASVSDDRSIRLWPIDSREV  209 (967)
T ss_pred             EeccccccEEEEeccccCCccee-cc------------cCCceEEEEEcc------CCcEEEEEecCcceeeeecccccc
Confidence            89999999999998733322222 23            789999999988      899999999999999999998532


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                      ..                                       ...-+|...|..+.|.   |+  .+++++.|.+.++|+.
T Consensus       210 ~~---------------------------------------~~~fgHsaRvw~~~~~---~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  210 LG---------------------------------------CTGFGHSARVWACCFL---PN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cC---------------------------------------cccccccceeEEEEec---cc--eeEEeccceEEEEEec
Confidence            21                                       2556899999999999   66  9999999999999977


Q ss_pred             CCceeeeecchhhhhhhhcccc-cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          323 SRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +..          .+..+.+|. +.|..++..+ +.-.++|++.||.+++|++
T Consensus       246 ~~~----------~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  246 NGT----------QLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             ccc----------eehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhh
Confidence            774          344666665 4678888877 7778999999999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.3e-12  Score=112.16  Aligned_cols=213  Identities=14%  Similarity=0.078  Sum_probs=129.9

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCE---EEEeCCCC--cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGF---VASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS   78 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~---l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~   78 (375)
                      .+...+.|......+.+-+|+|| |+.   +++...+|  .|.+.++.+++..+ +..........+|+|||+.|+..+.
T Consensus       173 dG~~~~~lt~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~  250 (428)
T PRK01029        173 DGQNLRPLTQEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISD  250 (428)
T ss_pred             CCCCceEcccCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEEC
Confidence            34445566666667788899999 553   23444443  57777888776433 3333445567899999999887653


Q ss_pred             -CC----eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEE--eCcC-ceeeeeEecCcccce
Q 017194           79 -GK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKII--DIRQ-HCLYKSLRAGHSSIC  149 (375)
Q Consensus        79 -d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~~~~~~~v  149 (375)
                       +|    .+..|++..+...........+.......+|+|||+.|+..+ .+|...+|  ++.. +.....+. .+...+
T Consensus       251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~  329 (428)
T PRK01029        251 RYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNS  329 (428)
T ss_pred             CCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCc
Confidence             22    344467664321111111111123446789999999887765 45654444  5432 23344454 444567


Q ss_pred             eEEEEeeCCCcEEEEee-cC--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          150 SSVQFIPWKPWEVISGG-LD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~-~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      ....|+|+|+. |+..+ .+  ..|.+||+.+++... +...             ...+....|+|      +++.|+..
T Consensus       330 ~~p~wSPDG~~-Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-------------~~~~~~p~wSp------DG~~L~f~  388 (428)
T PRK01029        330 SCPAWSPDGKK-IAFCSVIKGVRQICVYDLATGRDYQ-LTTS-------------PENKESPSWAI------DSLHLVYS  388 (428)
T ss_pred             cceeECCCCCE-EEEEEcCCCCcEEEEEECCCCCeEE-ccCC-------------CCCccceEECC------CCCEEEEE
Confidence            78999999994 55443 33  479999998876533 2211             23456788988      78887754


Q ss_pred             ec---CCcEEEEeCCCc
Q 017194          227 KG---DGVVDVINIESE  240 (375)
Q Consensus       227 ~~---dg~i~i~d~~~~  240 (375)
                      ..   ...|.++|+.++
T Consensus       389 ~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        389 AGNSNESELYLISLITK  405 (428)
T ss_pred             ECCCCCceEEEEECCCC
Confidence            43   346888888764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=3.2e-11  Score=95.00  Aligned_cols=277  Identities=14%  Similarity=0.187  Sum_probs=178.9

Q ss_pred             CCcEEEEecccCce---eeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCC-CcccccccccCCCcceeEE
Q 017194           37 DGCICWFDLRSKDV---QLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMP-ASWRPLESYNYNKEEINQI  109 (375)
Q Consensus        37 d~~i~iw~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~  109 (375)
                      +.-|.+|++.+..-   ...+-.+...++-|+|+|++++|.++..+   |.|..|.++.. ..+..+........+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            35699999874322   11222356778899999999999887654   67777777642 2233333332223445889


Q ss_pred             EEcCCCCeEEEEe-CCCcEEEEeCcC-cee---eeeEecCcccc----------eeEEEEeeCCCcEEEEee-cCCeEEE
Q 017194          110 VCNPKSSFLACAD-DGGDVKIIDIRQ-HCL---YKSLRAGHSSI----------CSSVQFIPWKPWEVISGG-LDSKLVM  173 (375)
Q Consensus       110 ~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~---~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~d~~i~~  173 (375)
                      ++++++++++++. ..|.|.++-++. |.+   +..+.  |.+.          +-...+.|++++ +++.. .--+|.+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~~-l~v~DLG~Dri~~  171 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGRY-LVVPDLGTDRIFL  171 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCCE-EEEeecCCceEEE
Confidence            9999999998886 568899999865 332   23333  5544          778899999984 55543 4457999


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeecccccCCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      |++..++....-....          ......+.|.|+|      ++++..+.+ -+++|.+|.........        
T Consensus       172 y~~~dg~L~~~~~~~v----------~~G~GPRHi~FHp------n~k~aY~v~EL~stV~v~~y~~~~g~~--------  227 (346)
T COG2706         172 YDLDDGKLTPADPAEV----------KPGAGPRHIVFHP------NGKYAYLVNELNSTVDVLEYNPAVGKF--------  227 (346)
T ss_pred             EEcccCcccccccccc----------CCCCCcceEEEcC------CCcEEEEEeccCCEEEEEEEcCCCceE--------
Confidence            9999776543322111          1235678999999      899988776 48899999988631111        


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecC---CCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceee
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGV  328 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~  328 (375)
                                               ..++.+..+..   -......+.++   +||++|.++.. ...|.+|.+......
T Consensus       228 -------------------------~~lQ~i~tlP~dF~g~~~~aaIhis---~dGrFLYasNRg~dsI~~f~V~~~~g~  279 (346)
T COG2706         228 -------------------------EELQTIDTLPEDFTGTNWAAAIHIS---PDGRFLYASNRGHDSIAVFSVDPDGGK  279 (346)
T ss_pred             -------------------------EEeeeeccCccccCCCCceeEEEEC---CCCCEEEEecCCCCeEEEEEEcCCCCE
Confidence                                     01111112211   13456778888   99999998864 347888877654221


Q ss_pred             eecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC-CeEEEEec
Q 017194          329 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-KVVKVYSI  374 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~v~iw~~  374 (375)
                      .     ..+.....+......+.+.+ ++++|+++..+ ..|.++.+
T Consensus       280 L-----~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         280 L-----ELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             E-----EEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence            1     23333334445577888988 88898888754 46777764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.1e-12  Score=113.62  Aligned_cols=175  Identities=14%  Similarity=0.186  Sum_probs=113.8

Q ss_pred             cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194           39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS  115 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  115 (375)
                      .|.++|..... .+.+..+...+.+..|+|||+.|+..+.+   ..|++||+.+++. ..+....   +......|+||+
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECCCC
Confidence            57777865544 34555567788999999999999887643   3689999987643 3333332   334578999999


Q ss_pred             CeEEE-EeCCCc--EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCC
Q 017194          116 SFLAC-ADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLP  190 (375)
Q Consensus       116 ~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~  190 (375)
                      +.|+. .+.+|.  |+++|+.+++.. .+. .+.......+|+|+++.++++...++  .|+++|+.+++.. .+...  
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~--  348 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFE--  348 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecC--
Confidence            98775 455664  888888777653 344 45556678899999985445544444  5667777766543 33211  


Q ss_pred             CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CC--cEEEEeCCCc
Q 017194          191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DG--VVDVINIESE  240 (375)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~  240 (375)
                                 .......+|+|      +|+.++..+. ++  .|.++|+.++
T Consensus       349 -----------g~~~~~~~~Sp------DG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        349 -----------GEQNLGGSITP------DGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             -----------CCCCcCeeECC------CCCEEEEEEecCCceEEEEEECCCC
Confidence                       12233467888      7888877654 33  4555676654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.59  E-value=1.2e-12  Score=108.78  Aligned_cols=192  Identities=16%  Similarity=0.193  Sum_probs=151.0

Q ss_pred             CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEc--------------------CCCCeEEEEeCCCcE
Q 017194           68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN--------------------PKSSFLACADDGGDV  127 (375)
Q Consensus        68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~l~~~~~dg~i  127 (375)
                      |...++|....||.+++|+..+++....+.....-.+..++..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            456789999999999999998776544443322223444444442                    123357778889999


Q ss_pred             EEEeCcCceeeeeEe-cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          128 KIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       128 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      .+|++..++....+. ..|.+.|+++.++.+-. .|.+++.|+.+..|+....+.+..+...             +..+.
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~-------------~~~~~  148 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQ-------------KPLVS  148 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccC-------------CCccc
Confidence            999999999888876 47899999999988877 7999999999999999998888888755             56788


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  286 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
                      +++++|      |++.+++++  ++|++||+++.                                        +.+..+
T Consensus       149 sl~is~------D~~~l~~as--~~ik~~~~~~k----------------------------------------evv~~f  180 (541)
T KOG4547|consen  149 SLCISP------DGKILLTAS--RQIKVLDIETK----------------------------------------EVVITF  180 (541)
T ss_pred             eEEEcC------CCCEEEecc--ceEEEEEccCc----------------------------------------eEEEEe
Confidence            999999      899999887  47999999985                                        667799


Q ss_pred             cCCCccEEEEEEeecCCC-----CcEEEEe-cCCCeEEEEeCCC
Q 017194          287 GGHTAAASCVAFSMFGER-----GKYLISG-GNDKLVKVWDCSR  324 (375)
Q Consensus       287 ~~~~~~v~~~~~s~~~~~-----~~~l~s~-~~dg~i~iwd~~~  324 (375)
                      .+|.++|+++.|.   .+     |.+++++ ..+..+.+|-+..
T Consensus       181 tgh~s~v~t~~f~---~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  181 TGHGSPVRTLSFT---TLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cCCCcceEEEEEE---EeccccccceeeeccccccceeEEEEEc
Confidence            9999999999997   55     6666654 4566788887765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=4e-13  Score=114.32  Aligned_cols=294  Identities=13%  Similarity=0.156  Sum_probs=194.2

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce---------------eeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---------------QLVTDVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      .....|+.|+.. ..++|+||.||.+++..+.+...               -+++.+|+..|..+.|+.+.+.|-+...+
T Consensus        14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            356789999998 78999999999999998764321               45678999999999999998889888899


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEEEeeCC
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~  158 (375)
                      |-|.+|-+-.+.-.+.... ...++.|.+++|+.+|..|+....||.|.+=.++..+.- +.++ +  .....+.|++|.
T Consensus        93 GlIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-g--~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-G--QLLAHVLWSEDL  168 (1189)
T ss_pred             ceEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-h--heccceeecccH
Confidence            9999999886643333222 223678999999999999999999999988777654332 2233 1  123478899998


Q ss_pred             CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC--ccccCCCCEEEEEecCCcEEEEe
Q 017194          159 PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA--DMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                      + .++.+-.+|.+.+||.... ....+...- .++........+..+..+.|...  ....|+...|+++...|.+.+..
T Consensus       169 ~-~~Lf~~ange~hlydnqgn-F~~Kl~~~c-~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  169 E-QALFKKANGETHLYDNQGN-FERKLEKDC-EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR  245 (1189)
T ss_pred             H-HHHhhhcCCcEEEeccccc-HHHhhhhce-EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence            8 6777788899999997532 211111100 00000000001233555555432  12245788899999999888866


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC-
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-  315 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg-  315 (375)
                      -.+...+.                                         +-...-.+....|+   ++|..||.++.|. 
T Consensus       246 ~eND~~Pv-----------------------------------------v~dtgm~~vgakWn---h~G~vLAvcG~~~d  281 (1189)
T KOG2041|consen  246 SENDPEPV-----------------------------------------VVDTGMKIVGAKWN---HNGAVLAVCGNDSD  281 (1189)
T ss_pred             hcCCCCCe-----------------------------------------EEecccEeecceec---CCCcEEEEccCccc
Confidence            55432111                                         11112467788898   8999999888653 


Q ss_pred             --------eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          316 --------LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       316 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                              .|.+|..-.          +.+..+.-....|++++|-. .|-.++.+ .|+.|++=
T Consensus       282 a~~~~d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg-~gLriA~A-vdsfiyfa  334 (1189)
T KOG2041|consen  282 ADEPTDSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEG-TGLRIAIA-VDSFIYFA  334 (1189)
T ss_pred             ccCccccceEEEeccch----------hheEEEecCCceeeeeEEcC-CceEEEEE-ecceEEEE
Confidence                    344444332          56666666777888888855 44333333 55666553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=9.4e-13  Score=113.97  Aligned_cols=202  Identities=12%  Similarity=0.107  Sum_probs=124.7

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCC-C--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCC--e
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGE-D--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK--E   81 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~-d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~--~   81 (375)
                      .+.+..+...+.+..|+|| |+.|+..+. +  ..|.+||+.+++... +...........|+|||+.|+.. +.++  .
T Consensus       210 ~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        210 EQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             ceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            4455556678889999999 777776533 3  358888988876532 22223334578999999988764 4455  4


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCC
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (375)
                      |+++|+.+++. ..+.   .+........|+||++.|+..+. ++  .|+++|+.+++... +. .........+|+|+|
T Consensus       288 Iy~~dl~tg~~-~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-~~g~~~~~~~~SpDG  361 (448)
T PRK04792        288 IYVVDIATKAL-TRIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT-FEGEQNLGGSITPDG  361 (448)
T ss_pred             EEEEECCCCCe-EECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee-cCCCCCcCeeECCCC
Confidence            88888876543 2222   23445677899999998876653 33  47777887766433 22 122233457899999


Q ss_pred             CcEEEEeecCC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-C--cEE
Q 017194          159 PWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-G--VVD  233 (375)
Q Consensus       159 ~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~  233 (375)
                      ++++++...++  .|.++|+.+++. ..+...              .......|+|      +++.++..+.+ |  .+.
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~--------------~~d~~ps~sp------dG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAM-QVLTST--------------RLDESPSVAP------NGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCe-EEccCC--------------CCCCCceECC------CCCEEEEEEecCCceEEE
Confidence            95444444444  456678776653 222211              1112336777      78887766543 3  366


Q ss_pred             EEeCC
Q 017194          234 VINIE  238 (375)
Q Consensus       234 i~d~~  238 (375)
                      +++..
T Consensus       421 ~~~~~  425 (448)
T PRK04792        421 AVSID  425 (448)
T ss_pred             EEECC
Confidence            66664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=4.9e-11  Score=93.95  Aligned_cols=263  Identities=10%  Similarity=0.134  Sum_probs=173.6

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCC---CCcEEEEeccc--Cce--eeEeeecCccEEEEEEeCCCCeEEEEcCC-CeEEE
Q 017194           13 GHKATATCCIASRDRPGFVASSGE---DGCICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKS   84 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~--~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-~~i~i   84 (375)
                      .+.+..+=|+|+|+ ++.|.++..   +|.|.-|.++.  |+.  +........+-..+++++++++++++... |.|.+
T Consensus        37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence            45666778999998 778887754   47788888775  443  11112223444889999999999998875 79999


Q ss_pred             EECCCCCcccccccccCCCcc----------eeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEe--cCcccceeE
Q 017194           85 FDVHMPASWRPLESYNYNKEE----------INQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLR--AGHSSICSS  151 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~--~~~~~~v~~  151 (375)
                      +-++....+........|.+.          +....+.|++++|++.+- .-.|.+|++..++....-.  .......+.
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            999764334433333333444          788999999999988762 3369999998775432111  023456799


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-C
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-D  229 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-d  229 (375)
                      |.|+|+++...+..--+++|.+|..+.. ..+..++...    ..........+...|.++|      +|++|.++.. .
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~----tlP~dF~g~~~~aaIhis~------dGrFLYasNRg~  265 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID----TLPEDFTGTNWAAAIHISP------DGRFLYASNRGH  265 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec----cCccccCCCCceeEEEECC------CCCEEEEecCCC
Confidence            9999999965666778999999999873 2233322110    0001111345677888988      8999998863 3


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI  309 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~  309 (375)
                      ..|.+|.+..                      ++.              .+..+.....+....+...|+   ++|++|+
T Consensus       266 dsI~~f~V~~----------------------~~g--------------~L~~~~~~~teg~~PR~F~i~---~~g~~Li  306 (346)
T COG2706         266 DSIAVFSVDP----------------------DGG--------------KLELVGITPTEGQFPRDFNIN---PSGRFLI  306 (346)
T ss_pred             CeEEEEEEcC----------------------CCC--------------EEEEEEEeccCCcCCccceeC---CCCCEEE
Confidence            4666666553                      222              233444444555556788888   8999999


Q ss_pred             EecCC-CeEEEEeCCCc
Q 017194          310 SGGND-KLVKVWDCSRF  325 (375)
Q Consensus       310 s~~~d-g~i~iwd~~~~  325 (375)
                      ++.+| ..|.+|..+..
T Consensus       307 aa~q~sd~i~vf~~d~~  323 (346)
T COG2706         307 AANQKSDNITVFERDKE  323 (346)
T ss_pred             EEccCCCcEEEEEEcCC
Confidence            88764 46888877654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=2.7e-13  Score=105.30  Aligned_cols=265  Identities=14%  Similarity=0.149  Sum_probs=169.6

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc--ccccccccCC------------CcceeEEEEcCCCC--eEEEE
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS--WRPLESYNYN------------KEEINQIVCNPKSS--FLACA  121 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~  121 (375)
                      .+-|.++.|...|.+|++|..+|.|.++.-.....  ......++.|            ...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            46788999999999999999999999997543221  1122222222            34688899998654  46667


Q ss_pred             eCCCcEEEEeCcCcee-----------------------------------eeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194          122 DDGGDVKIIDIRQHCL-----------------------------------YKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       122 ~~dg~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ..|.+|++|.+.....                                   .+.+..+|..-|+++.++.|.. .++++ 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA-  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA-  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEeec-
Confidence            7899999998763211                                   1122236778899999999987 45554 


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee--
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS--  244 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--  244 (375)
                      .|=.|.+|++.-......+.--.|.....     -...|++..|+|.     ..++++-.+..|+|++-|++....-.  
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEe-----LteVITsaEFhp~-----~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEE-----LTEVITSAEFHPH-----HCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHH-----HHHHHhhhccCHh-----HccEEEEecCCCcEEEeechhhhhhcch
Confidence            57789999987543333222111110000     1235788889986     67888899999999999999532111  


Q ss_pred             -cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          245 -RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       245 -~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                       ++...+..+.                           -..-+..--..|..+.|+   ++|+|+++-+. -+|++||+.
T Consensus       253 sKlfEepedp~---------------------------~rsffseiIsSISDvKFs---~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  253 SKLFEEPEDPS---------------------------SRSFFSEIISSISDVKFS---HSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             hhhhccccCCc---------------------------chhhHHHHhhhhhceEEc---cCCcEEEEecc-ceeEEEecc
Confidence             1111100000                           000111224568899999   99999998876 689999995


Q ss_pred             Cceeeeecchhhhhhhhccc------------ccc---eeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          324 RFQGVQTSINNDLLIKNINL------------NKK---VNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~------------~~~---v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      -..        +.+.+..-|            ...   -..++|+. ++.+++||+....++++++
T Consensus       302 me~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  302 MEA--------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             ccC--------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecC
Confidence            432        112222211            112   24567877 7789999999999999874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=3e-13  Score=119.43  Aligned_cols=201  Identities=16%  Similarity=0.114  Sum_probs=155.7

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccC-CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      +.|....+..+...++.++.++.+.+||...+.....+..-.. .-....-+.++++.-++++|+.-+.|.+|+....+.
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            4455555566777899999999999999986544333332110 001222344567777899999999999999884444


Q ss_pred             eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      ...+. +|.+.+.++.|+.+|. ++++.++|.++++|++.+.+.....-++            |+..+..+.+.|     
T Consensus       168 p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fg------------HsaRvw~~~~~~-----  228 (967)
T KOG0974|consen  168 PIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFG------------HSARVWACCFLP-----  228 (967)
T ss_pred             cceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCccccc------------ccceeEEEEecc-----
Confidence            34577 9999999999999999 7999999999999999998877755556            789999999987     


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC-ccEEEE
Q 017194          218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCV  296 (375)
Q Consensus       218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~  296 (375)
                       +  .+++++.|.+.++|+...                                         ..+..+.+|. ..+..+
T Consensus       229 -n--~i~t~gedctcrvW~~~~-----------------------------------------~~l~~y~~h~g~~iw~~  264 (967)
T KOG0974|consen  229 -N--RIITVGEDCTCRVWGVNG-----------------------------------------TQLEVYDEHSGKGIWKI  264 (967)
T ss_pred             -c--eeEEeccceEEEEEeccc-----------------------------------------ceehhhhhhhhcceeEE
Confidence             4  999999999999997663                                         2222556663 468999


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      +..   ++...++|++.|+.+++|++...
T Consensus       265 ~~~---~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  265 AVP---IGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEc---CCceEEEeeccCcchhhhhhhcc
Confidence            998   88889999999999999998764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.56  E-value=7.7e-12  Score=102.37  Aligned_cols=317  Identities=11%  Similarity=0.028  Sum_probs=203.7

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC--------------
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--------------   79 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------------   79 (375)
                      -.-++..+++||. |.+|++....| |.+|....+..+..+.  ...|..+.|+|.+++|.+-+..              
T Consensus        31 ~~~p~~~~~~SP~-G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          31 ENWPVAYVSESPL-GTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             cCcchhheeecCc-chheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            4567888999999 89999888765 9999988777555554  3578999999999999986643              


Q ss_pred             -CeEEEEECCCCCcccccccccCCCccee-EEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEEEEee
Q 017194           80 -KEVKSFDVHMPASWRPLESYNYNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        80 -~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~  156 (375)
                       +.+.+||+.++............ .-.. -+.|+.+.+++|-- ....++|+++ +... ...+.......+....|+|
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~-~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQP-YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCc-ccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence             35999999987554443333211 1133 67888888887655 3357999997 3322 1122201124678888999


Q ss_pred             CCCc-EEEE-----eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe---
Q 017194          157 WKPW-EVIS-----GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---  227 (375)
Q Consensus       157 ~~~~-~l~~-----~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---  227 (375)
                      .++. .|+.     .+.++++++|.+..+..+....+-             ...-..+.|.+      .|++|++--   
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-------------k~~~~qLkW~~------~g~~ll~l~~t~  244 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-------------KVSGVQLKWQV------LGKYLLVLVMTH  244 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-------------eecccEEEEec------CCceEEEEEEEe
Confidence            7541 2333     456789999999877665544322             12223566666      465554321   


Q ss_pred             --------cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC----cceeEeeeeecCCCccEEE
Q 017194          228 --------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASC  295 (375)
Q Consensus       228 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~  295 (375)
                              .+..++++++.....+...  ....++....|.|.++.++++..+....    .....+.  +......-+.
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~--~~~Pe~~rNT  320 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR--FYFPEQKRNT  320 (561)
T ss_pred             eecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccccceE--EecCCccccc
Confidence                    2356888888743333322  4467888999999999988755332211    1111122  2223445566


Q ss_pred             EEEeecCCCCcEEEEecCC---CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee------CC
Q 017194          296 VAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD------TS  366 (375)
Q Consensus       296 ~~~s~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d  366 (375)
                      +.|+   |.+++++.++-|   |.|-+||.....        .++..+.+  ....-+.|+| |++++.+..      .|
T Consensus       321 ~~fs---p~~r~il~agF~nl~gni~i~~~~~rf--------~~~~~~~~--~n~s~~~wsp-d~qF~~~~~ts~k~~~D  386 (561)
T COG5354         321 IFFS---PHERYILFAGFDNLQGNIEIFDPAGRF--------KVAGAFNG--LNTSYCDWSP-DGQFYDTDTTSEKLRVD  386 (561)
T ss_pred             cccc---CcccEEEEecCCccccceEEeccCCce--------EEEEEeec--CCceEeeccC-CceEEEecCCCcccccC
Confidence            7889   899999988765   679999998863        22112222  2233457888 999888753      57


Q ss_pred             CeEEEEec
Q 017194          367 KVVKVYSI  374 (375)
Q Consensus       367 g~v~iw~~  374 (375)
                      ..|.||++
T Consensus       387 n~i~l~~v  394 (561)
T COG5354         387 NSIKLWDV  394 (561)
T ss_pred             cceEEEEe
Confidence            88999997

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.55  E-value=5.4e-11  Score=97.36  Aligned_cols=271  Identities=12%  Similarity=0.034  Sum_probs=160.5

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC----------CCeEEEEECCCCCcccccccccC----CC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY----NK  103 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~----~~  103 (375)
                      ++|.+.|..+++.+..+..-..+- .+ ++||++.|+.+..          +..|.+||..+.+....+..-..    ..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999988887644443 34 9999998887766          67999999998766555543211    01


Q ss_pred             cceeEEEEcCCCCeEEEEe-C-CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194          104 EEINQIVCNPKSSFLACAD-D-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  181 (375)
                      .....++++|||++|++.. . +..|.+.|+.+++.+..+. - .....-...++..   +..-+.||......+.....
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-v-p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-V-PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe-C-CCCcEEEEecCCc---cEEEeecCceEEEEecCCCc
Confidence            2334789999999999876 3 6899999999999998887 2 1211222222211   12223344444333322111


Q ss_pred             ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194          182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~  261 (375)
                      ...-...  -..... ......+    .+.+.     +++++.+... |.|.+.|+..........              
T Consensus       180 ~~~~~~~--vf~~~~-~~v~~rP----~~~~~-----dg~~~~vs~e-G~V~~id~~~~~~~~~~~--------------  232 (352)
T TIGR02658       180 PKIKPTE--VFHPED-EYLINHP----AYSNK-----SGRLVWPTYT-GKIFQIDLSSGDAKFLPA--------------  232 (352)
T ss_pred             eEEeeee--eecCCc-cccccCC----ceEcC-----CCcEEEEecC-CeEEEEecCCCcceecce--------------
Confidence            1110000  000000 0000111    22332     6777777776 999999976532211100              


Q ss_pred             cccceeeeeeeecCCcceeEeeee--e--cCCCccEEEEEEeecCCCCcEEEEec----------CCCeEEEEeCCCcee
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYS--V--GGHTAAASCVAFSMFGERGKYLISGG----------NDKLVKVWDCSRFQG  327 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~s~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~  327 (375)
                                        +..+..  .  .-....+.-++++   ++++.+....          ..+.|.++|..+.+ 
T Consensus       233 ------------------~~~~~~~~~~~~wrP~g~q~ia~~---~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-  290 (352)
T TIGR02658       233 ------------------IEAFTEAEKADGWRPGGWQQVAYH---RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-  290 (352)
T ss_pred             ------------------eeeccccccccccCCCcceeEEEc---CCCCEEEEEecCCccccccCCCCEEEEEECCCCe-
Confidence                              000000  0  0123344458898   8888777632          22579999999984 


Q ss_pred             eeecchhhhhhhhcccccceeeeeecCCCCC-cEEEee-CCCeEEEEec
Q 017194          328 VQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSI  374 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~v~iw~~  374 (375)
                              .+..+ .-...+..++++| |++ +|++.. .++.|.+.|.
T Consensus       291 --------vi~~i-~vG~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       291 --------RLRKI-ELGHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             --------EEEEE-eCCCceeeEEECC-CCCeEEEEeCCCCCcEEEEEC
Confidence                    33222 2345788999999 888 777666 6788999886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=8.6e-12  Score=107.17  Aligned_cols=220  Identities=10%  Similarity=0.067  Sum_probs=132.7

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCe--EEEEc-CC--CeEEEEECCCCCcccccccccCCCcceeEEEEc
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED--IIYVS-SG--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN  112 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  112 (375)
                      ..|.+.|...+.. +.+.........-+|+|||+.  ++..+ .+  ..|.+.++.+++. ..+..+   .+.....+|+
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~---~g~~~~p~wS  239 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILAL---QGNQLMPTFS  239 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecC---CCCccceEEC
Confidence            3677777765543 445445566778899999975  32233 33  3688889886643 444444   3345568999


Q ss_pred             CCCCeEEEEeC-CC----cEEEEeCcCc---eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe--eCCC-CCc
Q 017194          113 PKSSFLACADD-GG----DVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW--DFSK-GRP  181 (375)
Q Consensus       113 ~~~~~l~~~~~-dg----~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~-~~~  181 (375)
                      |||+.|+..+. +|    .+..|++..+   +..+... .........+|+|||+.++++...+|...+|  ++.. +..
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence            99998887653 22    3444676642   3323332 2233456789999998544444456654555  4432 222


Q ss_pred             ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCCcceeecccccCCCCCCcee
Q 017194          182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQS  258 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  258 (375)
                      ...+...             ...+....|+|      +|+.|+..+.+   ..|.+||+.+++..               
T Consensus       319 ~~~lt~~-------------~~~~~~p~wSP------DG~~Laf~~~~~g~~~I~v~dl~~g~~~---------------  364 (428)
T PRK01029        319 PRLLTKK-------------YRNSSCPAWSP------DGKKIAFCSVIKGVRQICVYDLATGRDY---------------  364 (428)
T ss_pred             eEEeccC-------------CCCccceeECC------CCCEEEEEEcCCCCcEEEEEECCCCCeE---------------
Confidence            3333211             23556788999      79988876543   36899998864321               


Q ss_pred             ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC---CCeEEEEeCCCce
Q 017194          259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQ  326 (375)
Q Consensus       259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~---dg~i~iwd~~~~~  326 (375)
                                                .+......+....|+   |||+.|+..+.   ...|+++|+..++
T Consensus       365 --------------------------~Lt~~~~~~~~p~wS---pDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        365 --------------------------QLTTSPENKESPSWA---IDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             --------------------------EccCCCCCccceEEC---CCCCEEEEEECCCCCceEEEEECCCCC
Confidence                                      122222345668899   89988774332   4578899998763

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=1.1e-13  Score=128.43  Aligned_cols=193  Identities=15%  Similarity=0.241  Sum_probs=159.2

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      ++.|-..|.++.-+|. ..+.+||+.||.+++|....++.+..++. .+..|+.+.|+.+|+.+..+..||.+.+|... 
T Consensus      2204 ~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             eecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            4456677888888998 68899999999999999998888777652 34889999999999999999999999999987 


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEe---CCCcEEEEeCcCc---eeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                         .+++...+.|.....++.|-.  ..+++++   .++.+.+||.--.   ..+.  . .|...++++++.|... +|+
T Consensus      2282 ---pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~~~P~~q-lli 2352 (2439)
T KOG1064|consen 2282 ---PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLAYAPKHQ-LLI 2352 (2439)
T ss_pred             ---CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEEEcCcce-EEE
Confidence               577778888999999999876  4566654   5788999996532   2233  4 7999999999999988 899


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +|+.+|.|++||++..+..+.++.                      +.       ...++++|+..|.|+||++......
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~~~----------------------~~-------~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA----------------------LD-------TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHhhh----------------------hh-------hhheeeccCcccceEEEEccccchh
Confidence            999999999999998888776651                      11       3778999999999999999975433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.52  E-value=1e-10  Score=108.72  Aligned_cols=203  Identities=9%  Similarity=0.066  Sum_probs=137.2

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEE----ecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWF----DLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-   89 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw----~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-   89 (375)
                      .+.|.++.+.++ ...++.+..+|.|.+.    +..+.. +.....-...|.+++||||+..|+.++.++++.+-+-.= 
T Consensus        75 ~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   75 NDKIVSFQYLAD-SESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CCcEEEEEeccC-CCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            467999999998 7788888889999999    544433 222333467999999999999999999888877654210 


Q ss_pred             ----------------------CCc--------ccc---------c-----ccccCCCcceeEEEEcCCCCeEEEEeC--
Q 017194           90 ----------------------PAS--------WRP---------L-----ESYNYNKEEINQIVCNPKSSFLACADD--  123 (375)
Q Consensus        90 ----------------------~~~--------~~~---------~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~--  123 (375)
                                            |+.        .+.         +     ..+. ....-..++|-.||.++|+.+.  
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence                                  000        000         0     0001 2234567889999999998874  


Q ss_pred             -C---CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec---CCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194          124 -G---GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNA  196 (375)
Q Consensus       124 -d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  196 (375)
                       .   ..++||+-+ |....+-. .-.+--.+++|.|.|+ ++++...   ...|.+|. ++|-.-..+.+...      
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~------  301 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD------  301 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC------
Confidence             2   479999954 65544333 3333345789999998 6777654   35677777 44555555554310      


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                         .....+..+.|++      ++..||+...|. |.+|-..+.
T Consensus       302 ---~~~~~v~~l~Wn~------ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  302 ---PEEEKVIELAWNS------DSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             ---CCCceeeEEEECC------CCCEEEEEecCC-ceEEEeeCC
Confidence               0245789999999      899999987664 999988863

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.52  E-value=1.3e-11  Score=102.90  Aligned_cols=194  Identities=13%  Similarity=0.122  Sum_probs=149.9

Q ss_pred             CCCEEEEeCCCCcEEEEecccCceeeEeeec---CccEEEEEEe------C--------------CCCeEEEEcCCCeEE
Q 017194           27 RPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFK------S--------------GNEDIIYVSSGKEVK   83 (375)
Q Consensus        27 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~l~~~------~--------------~~~~l~~~~~d~~i~   83 (375)
                      ...++|....||.+++|+..+++....+...   .+...+..|.      |              +...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            3689999999999999999998876666421   3334444442      2              334577788889999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +|+...++....+ .-..|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.++ .....+.+++.+||+. +++
T Consensus        84 ~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~-~l~  160 (541)
T KOG4547|consen   84 LYSVAGGEITAKL-STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGK-ILL  160 (541)
T ss_pred             EEEecCCeEEEEE-ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCC-EEE
Confidence            9999876543333 335688999999999998999999999999999999999999999 7888999999999998 788


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE-EecCCcEEEEeCCC
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIES  239 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~  239 (375)
                      +++  ++|++||+++++.+..+. +            |.++|.++.|... +..-.|.++.+ +..+..+.+|-...
T Consensus       161 ~as--~~ik~~~~~~kevv~~ft-g------------h~s~v~t~~f~~~-~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFT-G------------HGSPVRTLSFTTL-IDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEec-C------------CCcceEEEEEEEe-ccccccceeeeccccccceeEEEEEc
Confidence            887  689999999999999987 4            6889999999762 00111455444 44566677776654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=2.1e-13  Score=112.79  Aligned_cols=283  Identities=11%  Similarity=0.106  Sum_probs=178.4

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-------ceeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      +..+.||+..|..++--.+ .+-+++++.|.+|++|.++..       .+..+++.|+.+|.++.|..+.++++  +.|+
T Consensus       728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccC
Confidence            4567899999998876655 678999999999999998642       35677889999999999998887776  4589


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEE-eCCCcEEEEeCcCceeeeeEec----CcccceeEEE
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACA-DDGGDVKIIDIRQHCLYKSLRA----GHSSICSSVQ  153 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~  153 (375)
                      .|.+||.--++.+..+..-.. .+.+..+...++  ...+.+| +...+|+++|.+..+-...++.    +.+.-+++++
T Consensus       805 giHlWDPFigr~Laq~~dapk-~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPK-EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccchhHhhhcCcc-cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            999999876554443332222 233444444443  3444444 6788999999998766555541    3456789999


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      ..+.|+ .++.+-.+|.|.+.|.++|+.+..+..-             ......++-       |..+.|+....|.++.
T Consensus       884 Va~~GN-~lAa~LSnGci~~LDaR~G~vINswrpm-------------ecdllqlaa-------psdq~L~~saldHsla  942 (1034)
T KOG4190|consen  884 VADKGN-KLAAALSNGCIAILDARNGKVINSWRPM-------------ECDLLQLAA-------PSDQALAQSALDHSLA  942 (1034)
T ss_pred             eccCcc-hhhHHhcCCcEEEEecCCCceeccCCcc-------------cchhhhhcC-------chhHHHHhhcccceeE
Confidence            999999 5999999999999999999887765421             111222222       1456666666677777


Q ss_pred             E-EeCCCcceeecccccCCCCC------Cceeecccccceeeeee-eecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194          234 V-INIESELNISRSKSTTKPLK------GSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  305 (375)
Q Consensus       234 i-~d~~~~~~~~~~~~~~~~~~------~~~~~s~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  305 (375)
                      + |-...+........++.+..      .++....+|+.+.+... .......+...+ .-....+..++++.-   |-+
T Consensus       943 VnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKi-R~d~f~G~lTala~L---PLN 1018 (1034)
T KOG4190|consen  943 VNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKI-RPDEFPGTLTALAPL---PLN 1018 (1034)
T ss_pred             eeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccc-cccccCCccceeeec---ccc
Confidence            7 77666555444444433322      12333344444332100 000001111111 111123456677766   555


Q ss_pred             cEEEEecCCCeEEE
Q 017194          306 KYLISGGNDKLVKV  319 (375)
Q Consensus       306 ~~l~s~~~dg~i~i  319 (375)
                      .-++.|.+.|.|.+
T Consensus      1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             chhhccCCCCceee
Confidence            66677888887765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.49  E-value=6.8e-11  Score=101.11  Aligned_cols=260  Identities=12%  Similarity=0.082  Sum_probs=155.1

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCC--cc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK--EE  105 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~  105 (375)
                      +..++.++.++.+..+|..+|+.+....... .+.+.-.. .+..++.++.++.++.||.++++..-.........  ..
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            4567788889999999999999876655322 22221111 24467777889999999999876543332211000  00


Q ss_pred             eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc---c------e-eEEEEeeCCCcEEEEeecCCeEEEee
Q 017194          106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS---I------C-SSVQFIPWKPWEVISGGLDSKLVMWD  175 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~l~~~~~d~~i~~wd  175 (375)
                      ..+...  .+..++.+..++.+..+|.++++.+.........   .      + ....+  .+. .++.++.+|.++.||
T Consensus       183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALD  257 (377)
T ss_pred             CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEE
Confidence            011111  1246778888899999999998876543311000   0      0 11112  233 577788899999999


Q ss_pred             CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCC
Q 017194          176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG  255 (375)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  255 (375)
                      ..+++.+......               .......        .+..+++++.+|.+..+|..+++......        
T Consensus       258 ~~tG~~~W~~~~~---------------~~~~p~~--------~~~~vyv~~~~G~l~~~d~~tG~~~W~~~--------  306 (377)
T TIGR03300       258 LRSGRVLWKRDAS---------------SYQGPAV--------DDNRLYVTDADGVVVALDRRSGSELWKND--------  306 (377)
T ss_pred             CCCCcEEEeeccC---------------CccCceE--------eCCEEEEECCCCeEEEEECCCCcEEEccc--------
Confidence            9999877665422               1111222        46778888899999999998764332110        


Q ss_pred             ceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhh
Q 017194          256 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND  335 (375)
Q Consensus       256 ~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  335 (375)
                                                   .+..  ........     .+..|++++.+|.|+++|..+++         
T Consensus       307 -----------------------------~~~~--~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG~---------  341 (377)
T TIGR03300       307 -----------------------------ELKY--RQLTAPAV-----VGGYLVVGDFEGYLHWLSREDGS---------  341 (377)
T ss_pred             -----------------------------cccC--CccccCEE-----ECCEEEEEeCCCEEEEEECCCCC---------
Confidence                                         1111  11112222     34588889999999999999984         


Q ss_pred             hhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          336 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       336 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      .+.....+...+..--... + +.|+.++.||.|+.+
T Consensus       342 ~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       342 FVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            3333333332222221122 4 358899999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.48  E-value=1.6e-10  Score=94.86  Aligned_cols=276  Identities=12%  Similarity=0.082  Sum_probs=182.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCC---------------cEEEEecccCceeeEeeecCcc--EE-EEEEeCCCCeEEEEc
Q 017194           16 ATATCCIASRDRPGFVASSGEDG---------------CICWFDLRSKDVQLVTDVGNGP--VT-SLCFKSGNEDIIYVS   77 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~---------------~i~iw~~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~l~~~~   77 (375)
                      ..|.-+.|+|. +++|.+=+..+               .+.+||+.+|..+..+.....+  .. -+.|+-+.+++|-. 
T Consensus        72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-  149 (561)
T COG5354          72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-  149 (561)
T ss_pred             CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence            45888999998 89999865433               4999999999998888776555  55 67888888877655 


Q ss_pred             CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC--CeEEE-----EeCCCcEEEEeCcCceeeeeEecCccccee
Q 017194           78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLAC-----ADDGGDVKIIDIRQHCLYKSLRAGHSSICS  150 (375)
Q Consensus        78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  150 (375)
                      ....++|+++...-...+...+.  ...|....|+|.+  ..|+.     ....+.+++|.+..++.+.+-. -....=.
T Consensus       150 v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~  226 (561)
T COG5354         150 VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGV  226 (561)
T ss_pred             ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeeccc
Confidence            35689999973222223344432  4678899999964  33443     3467889999998665554332 2223335


Q ss_pred             EEEEeeCCCcEEEEee----------cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          151 SVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      .+.|.+.|+++++-.-          ....+++++++.........              ..++|...+|.|      .+
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~--------------~~~pVhdf~W~p------~S  286 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD--------------LKDPVHDFTWEP------LS  286 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc--------------ccccceeeeecc------cC
Confidence            6789999986444321          13567888887433322222              257899999999      46


Q ss_pred             CEEEEE--ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC-------CcceeEeeeeecCCCc
Q 017194          221 KICVVA--KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-------GGKRLHLDYSVGGHTA  291 (375)
Q Consensus       221 ~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  291 (375)
                      +.+++.  -.+-.+.++|++.. ....   .+......+.|+|.++++.+.|.-+..       ...+..+...+.+.  
T Consensus       287 ~~F~vi~g~~pa~~s~~~lr~N-l~~~---~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--  360 (561)
T COG5354         287 SRFAVISGYMPASVSVFDLRGN-LRFY---FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--  360 (561)
T ss_pred             CceeEEecccccceeecccccc-eEEe---cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--
Confidence            555544  47788999999976 2221   223445677899999998874432221       12233444444443  


Q ss_pred             cEEEEEEeecCCCCcEEEEec------CCCeEEEEeCCCc
Q 017194          292 AASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRF  325 (375)
Q Consensus       292 ~v~~~~~s~~~~~~~~l~s~~------~dg~i~iwd~~~~  325 (375)
                      ...-+.|+   ||++++.+..      .|..|.|||+...
T Consensus       361 n~s~~~ws---pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         361 NTSYCDWS---PDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             CceEeecc---CCceEEEecCCCcccccCcceEEEEecCc
Confidence            23456788   9999988764      3889999999886

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=4.1e-11  Score=103.19  Aligned_cols=330  Identities=14%  Similarity=0.084  Sum_probs=186.2

Q ss_pred             CCCCCeeeecCCCceeEEEEecCC-----------CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC---C
Q 017194            4 AEAKPRRLRGHKATATCCIASRDR-----------PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---G   69 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~-----------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~---~   69 (375)
                      +.+.++.+.-|...|+.+.|.|..           .-+||++...|.|.+||...+..+..++.|..++..++|-+   +
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence            456778888999999999998741           12578888899999999999998999999999999999975   3


Q ss_pred             C-CeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEE--------------------------
Q 017194           70 N-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACA--------------------------  121 (375)
Q Consensus        70 ~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~--------------------------  121 (375)
                      . ..|++-.....+.+|+..+|+..-.   +........|+.+.| |.+.+..-                          
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI  200 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI  200 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence            3 4567777788999999888653221   111122333344444 22222222                          


Q ss_pred             ------------------------------------------------eCCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194          122 ------------------------------------------------DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ  153 (375)
Q Consensus       122 ------------------------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  153 (375)
                                                                      .-...+.++|++-..++.... -..+.+.-+.
T Consensus       201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~  279 (1062)
T KOG1912|consen  201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVD  279 (1062)
T ss_pred             ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeE
Confidence                                                            223344444544444444444 3445556677


Q ss_pred             EeeCCC-cEEEEeecCCeEEEeeCCCCCcceEE-----ecCCCCCCCCCCcc-cCCCceeEEeecCCccccCCCCEEEEE
Q 017194          154 FIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIV-----NFGLPENNGNAGQC-YNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       154 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      +.|+.+ ..|++.-.||.+.+|-.+........     .....+  +-...+ .....+...+..|.     +...+++-
T Consensus       280 vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~--Q~~~vr~m~~~rp~~~~~cPs-----~~sa~avl  352 (1062)
T KOG1912|consen  280 VLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE--QVHVVRPMEEFRPVIGASCPS-----TPSALAVL  352 (1062)
T ss_pred             eccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc--ceEEEeechhcccceeecCCC-----Chhhhhhh
Confidence            777764 26888889999999986542111111     100000  000000 01112222333332     35556666


Q ss_pred             ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec-----
Q 017194          227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF-----  301 (375)
Q Consensus       227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----  301 (375)
                      -.+|.+.+|.+.+++..........+....+.|.-+...+.         ...+..+....+|.....+....|.     
T Consensus       353 ~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~---------k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~  423 (1062)
T KOG1912|consen  353 YSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVG---------KTSLISLSDDGSHSSGSTCVRMRPMPELTK  423 (1062)
T ss_pred             hhcchhHHHhhhcCCcCcccccccccccccccccCceeehh---------hccccchhhcCCCCCCceeeecccCcccce
Confidence            67888999999875443322211111111111111111110         0000001111123222222222210     


Q ss_pred             ---CCCC-------cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194          302 ---GERG-------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       302 ---~~~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                         .|.+       .++|.|...|+|.++|+.++         .+.+.+..|+..|.++.|.. .. .|++.+
T Consensus       424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~---------~v~~~fsvht~~VkgleW~g-~s-slvSfs  485 (1062)
T KOG1912|consen  424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN---------AVAASFSVHTSLVKGLEWLG-NS-SLVSFS  485 (1062)
T ss_pred             eecCCCCCccceeeeeEEeecCCceEEEEEecch---------hhhhhhcccccceeeeeecc-ce-eEEEee
Confidence               1222       37889999999999999998         77888899999999999976 43 355543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.46  E-value=9.7e-13  Score=112.33  Aligned_cols=298  Identities=15%  Similarity=0.143  Sum_probs=194.5

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-ceeeEee-ecCccEEEEEEeCCC--CeEEEEcCCCeEEEEECCCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DVQLVTD-VGNGPVTSLCFKSGN--EDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~-~~~~~v~~l~~~~~~--~~l~~~~~d~~i~iwd~~~~   90 (375)
                      .+++..+..+|. |+-+|.++.-| +.+.|+... .+..-+. ...-.|-.+.|+|..  .+-++......-.+|++...
T Consensus        24 ~~~~~a~si~p~-grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPS-GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccc-cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            567888999998 78888888877 556676543 3333232 113456678887753  34444444566679998765


Q ss_pred             CcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      .....--.+.+|...|+.+.|+|+. ..+++++.|-.+..||+++.. .+..+. .-......++|+-..+ .+.+.+..
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p-~vlasshg  179 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDP-NVLASSHG  179 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCc-chhhhccC
Confidence            4433334456889999999999965 468889999999999998753 444554 3445668899998777 46666677


Q ss_pred             CeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          169 SKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       169 ~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      ..|++||++.|. ++..++ +            +...++.++|...     -...+.+.+.||+|++||.........  
T Consensus       180 ~~i~vwd~r~gs~pl~s~K-~------------~vs~vn~~~fnr~-----~~s~~~s~~~d~tvkfw~y~kSt~e~~--  239 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTPLCSLK-G------------HVSSVNSIDFNRF-----KYSEIMSSSNDGTVKFWDYSKSTTESK--  239 (1081)
T ss_pred             CceEEEeccCCCcceEEec-c------------cceeeehHHHhhh-----hhhhhcccCCCCceeeecccccccccc--
Confidence            789999999875 444444 2            3567788888753     456788999999999999985321111  


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                                           .......+|..-.+.||+ +|.++.-.-.++.+.+++.++...
T Consensus       240 -------------------------------------~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n~d~  281 (1081)
T KOG0309|consen  240 -------------------------------------RTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCENSDL  281 (1081)
T ss_pred             -------------------------------------eeccccCcceeccccccC-ceeEeccccCCeeeeeccccchhh
Confidence                                                 111224455665666442 343433222233455554444321


Q ss_pred             ee-ecchhhhhhhhcccccceeeeeecCC---CC------CcEEEeeCCCeEEEEec
Q 017194          328 VQ-TSINNDLLIKNINLNKKVNWLCTTPT---ES------ENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       328 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~---~~------~~l~s~~~dg~v~iw~~  374 (375)
                      .+ .......+..+.||.+.|....|-..   ++      -.|++-+.|..+++|-+
T Consensus       282 e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  282 EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence            11 11122566788899999887777541   11      15999999999999976

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=1.2e-12  Score=121.81  Aligned_cols=216  Identities=15%  Similarity=0.206  Sum_probs=159.8

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEE
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIV  110 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  110 (375)
                      +.....++...-|..+-+..  .+..+-..|.++.-+|...+.++|+.||.+++|....+..........  ...|+.+.
T Consensus      2183 ~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--~s~vtr~~ 2258 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--NSRVTRSR 2258 (2439)
T ss_pred             CCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--cchhhhhh
Confidence            33333444444454332221  122345667788888988999999999999999998776555554432  47899999


Q ss_pred             EcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee---cCCeEEEeeCCCCCcceEEec
Q 017194          111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---LDSKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~  187 (375)
                      |+.+|+.+..+..||.+.+|.+. .+.....+ .|.....++.|...   .+++++   .++.+.+||........-+..
T Consensus      2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred             hcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeee
Confidence            99999999999999999999986 66677777 78888899998873   577664   578999999764433222222


Q ss_pred             CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                      .            |...++++++-|      ..++|++|+.+|.|++||++..+                          
T Consensus      2334 ~------------H~~gaT~l~~~P------~~qllisggr~G~v~l~D~rqrq-------------------------- 2369 (2439)
T KOG1064|consen 2334 C------------HDGGATVLAYAP------KHQLLISGGRKGEVCLFDIRQRQ-------------------------- 2369 (2439)
T ss_pred             e------------cCCCceEEEEcC------cceEEEecCCcCcEEEeehHHHH--------------------------
Confidence            3            688999999999      79999999999999999999531                          


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                                    +.+.++.         +    ....++++|+..|.|+||++....
T Consensus      2370 --------------l~h~~~~---------~----~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2370 --------------LRHTFQA---------L----DTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             --------------HHHHhhh---------h----hhhheeeccCcccceEEEEccccc
Confidence                          1222221         2    235689999999999999999873

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.44  E-value=1.4e-09  Score=88.92  Aligned_cols=153  Identities=12%  Similarity=0.088  Sum_probs=116.3

Q ss_pred             EecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC-eEEEEECCCCCcccccccccC
Q 017194           23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-EVKSFDVHMPASWRPLESYNY  101 (375)
Q Consensus        23 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~  101 (375)
                      |++-+|++++..+. |...|.+...+-.++.  +|...|.-..+..+++-++.|..|| .+-|+|.++++..+..    .
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e----~  399 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE----K  399 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee----C
Confidence            45555788887775 6777777554443322  3567788888888888899999998 8999999976532222    2


Q ss_pred             CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC----CeEEEeeCC
Q 017194          102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFS  177 (375)
Q Consensus       102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~wd~~  177 (375)
                      .-+.|.++..+++|++++++.....+.+.|++++.....-+ ...+-|+.++|+|+++ .+|-+--+    ..|+++|+.
T Consensus       400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecC
Confidence            35789999999999999999999999999999987755444 5667899999999998 57766554    479999999


Q ss_pred             CCCcceE
Q 017194          178 KGRPNKI  184 (375)
Q Consensus       178 ~~~~~~~  184 (375)
                      .++....
T Consensus       478 ~~Kiy~v  484 (668)
T COG4946         478 GGKIYDV  484 (668)
T ss_pred             CCeEEEe
Confidence            7765443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.44  E-value=2.3e-09  Score=87.90  Aligned_cols=256  Identities=12%  Similarity=0.074  Sum_probs=149.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEe-C---------CCCcEEEEecccCceeeEeeecCc-------cEEEEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASS-G---------EDGCICWFDLRSKDVQLVTDVGNG-------PVTSLCF   66 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~-~---------~d~~i~iw~~~~~~~~~~~~~~~~-------~v~~l~~   66 (375)
                      +++.+.++..-..+-- + ++|| ++.|+.+ +         .+..|.+||..+.+.+..+.....       ....+++
T Consensus        36 ~~~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l  112 (352)
T TIGR02658        36 AGRVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL  112 (352)
T ss_pred             CCEEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence            3344444543333322 4 8999 5665555 4         478999999999999888874322       2347889


Q ss_pred             eCCCCeEEEEc-C-CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-cee-ee---
Q 017194           67 KSGNEDIIYVS-S-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCL-YK---  139 (375)
Q Consensus        67 ~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~---  139 (375)
                      +|||++|+... . +..|.+.|+.+++....+..    .....-...+++..+  +-+.||......+.+ ++. ..   
T Consensus       113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeee
Confidence            99999988776 3 68999999998766655554    122222222222222  112344443333221 111 11   


Q ss_pred             eEecCcccce-eEEEEee-CCCcEEEEeecCCeEEEeeCCCCCc-----ceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194          140 SLRAGHSSIC-SSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRP-----NKIVNFGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       140 ~~~~~~~~~v-~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      .+. ....++ ..-.|.+ ++. .+....+ |+|.+.|+.....     ...+...      ....-+.+....-++++|
T Consensus       187 vf~-~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~------~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       187 VFH-PEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA------EKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             eec-CCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeecccc------ccccccCCCcceeEEEcC
Confidence            111 100000 0014566 676 4555444 9999999754332     2222111      011123455556699998


Q ss_pred             CccccCCCCEEEEEe----------cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194          213 ADMLDKTNKICVVAK----------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  282 (375)
Q Consensus       213 ~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~  282 (375)
                            +++.+++..          ..+.|.++|..+.+.                                        
T Consensus       258 ------dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv----------------------------------------  291 (352)
T TIGR02658       258 ------ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR----------------------------------------  291 (352)
T ss_pred             ------CCCEEEEEecCCccccccCCCCEEEEEECCCCeE----------------------------------------
Confidence                  788888743          225799999987532                                        


Q ss_pred             eeeecCCCccEEEEEEeecCCCCc-EEEEec-CCCeEEEEeCCCcee
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGK-YLISGG-NDKLVKVWDCSRFQG  327 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~  327 (375)
                      +..+.. ...+..++++   ||++ +|++.. .++.|.++|..+++.
T Consensus       292 i~~i~v-G~~~~~iavS---~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       292 LRKIEL-GHEIDSINVS---QDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEEEeC-CCceeeEEEC---CCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            223222 3478999999   9999 777665 578899999999843

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.42  E-value=7.7e-10  Score=104.88  Aligned_cols=269  Identities=12%  Similarity=0.125  Sum_probs=164.8

Q ss_pred             eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-c-------------CccEEEEEEeCCCCeEEEEcC-CCeEE
Q 017194           19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-G-------------NGPVTSLCFKSGNEDIIYVSS-GKEVK   83 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~-------------~~~v~~l~~~~~~~~l~~~~~-d~~i~   83 (375)
                      ..+++++.+++++++-..++.|+++|.. +..+..+.. .             -.....+++.++++.|+.+.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            3578887656778877888899999976 444333322 1             123578999998876665544 56899


Q ss_pred             EEECCCCCccccccc-------ccCC-------CcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEec-----
Q 017194           84 SFDVHMPASWRPLES-------YNYN-------KEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRA-----  143 (375)
Q Consensus        84 iwd~~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----  143 (375)
                      ++|+.++.. ..+..       +.+.       -.....++++| ++..+++...++.|++||..++... .+..     
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            999876432 11110       0000       11235789999 4556666677889999998776542 2210     


Q ss_pred             ---C------cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCC---CC------CCCCcccCCCce
Q 017194          144 ---G------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE---NN------GNAGQCYNPAFV  205 (375)
Q Consensus       144 ---~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~v  205 (375)
                         +      .-.....|+++|+++.++++-+.++.|++||+.++..... ..+.+.   ..      ........-...
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~-~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL-AGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecccccCcccccccCCCCchhhhhccCC
Confidence               0      1124567999999986667777889999999987653211 101000   00      000000001123


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                      ..+++++      +|+++++-..++.|++||..++......... .      .-.+||.                    .
T Consensus       807 ~Gvavd~------dG~LYVADs~N~rIrviD~~tg~v~tiaG~G-~------~G~~dG~--------------------~  853 (1057)
T PLN02919        807 LGVLCAK------DGQIYVADSYNHKIKKLDPATKRVTTLAGTG-K------AGFKDGK--------------------A  853 (1057)
T ss_pred             ceeeEeC------CCcEEEEECCCCEEEEEECCCCeEEEEeccC-C------cCCCCCc--------------------c
Confidence            5788887      7888888889999999999875332111000 0      0000111                    1


Q ss_pred             ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                      ..+.-.....++++   ++|+++++-+.++.|++||+.+++.
T Consensus       854 ~~a~l~~P~GIavd---~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        854 LKAQLSEPAGLALG---ENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccccCCceEEEEe---CCCCEEEEECCCCEEEEEECCCCcc
Confidence            12233456789999   8999999999999999999988753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=1.2e-12  Score=108.49  Aligned_cols=215  Identities=13%  Similarity=0.104  Sum_probs=151.3

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc----ccccccccCCCcceeEEEEcCCCCeEEEEeCCCc
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKSSFLACADDGGD  126 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  126 (375)
                      +..+.+|...|..++--.+.+.+++++.|+++++|.++....    ....-++..|+.+|.++.|..+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            455678999999887777778899999999999999875221    12344677899999999999998888876  788


Q ss_pred             EEEEeCcCceeeeeEec-CcccceeEEEEeeC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCC
Q 017194          127 VKIIDIRQHCLYKSLRA-GHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA  203 (375)
Q Consensus       127 i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (375)
                      |++||.--++.+..+.. ...+.+..+...++  ...+++.++...+|+++|.+..+....++....        .....
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~~Pna  877 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------PGPNA  877 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC--------CCCch
Confidence            99999887777654321 12233344443343  232344447889999999999888777764310        01235


Q ss_pred             ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee
Q 017194          204 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD  283 (375)
Q Consensus       204 ~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~  283 (375)
                      .+.++++.|      .|+.++++-.+|.|.+.|.++++.+.                                       
T Consensus       878 ~~R~iaVa~------~GN~lAa~LSnGci~~LDaR~G~vIN---------------------------------------  912 (1034)
T KOG4190|consen  878 LTRAIAVAD------KGNKLAAALSNGCIAILDARNGKVIN---------------------------------------  912 (1034)
T ss_pred             heeEEEecc------CcchhhHHhcCCcEEEEecCCCceec---------------------------------------
Confidence            678999988      79999999999999999999874332                                       


Q ss_pred             eeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE-EeCCCc
Q 017194          284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV-WDCSRF  325 (375)
Q Consensus       284 ~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i-wd~~~~  325 (375)
                       ..+........++-    |..+.|+....|.++.+ |..-++
T Consensus       913 -swrpmecdllqlaa----psdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  913 -SWRPMECDLLQLAA----PSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             -cCCcccchhhhhcC----chhHHHHhhcccceeEeeehhcCC
Confidence             12221222233332    56678888888888888 877665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.40  E-value=2.3e-11  Score=91.18  Aligned_cols=200  Identities=7%  Similarity=-0.051  Sum_probs=123.0

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCce------------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      |+.+.++-+  ..|+++..++.+......++.+            .+.+..|.++-.+-+.+--++.++++..||.+.++
T Consensus        39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            556666644  4677777777666655443322            22233333322222223335678999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-----CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-----DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      +.+..  .+.......-...-.+.++...++.+.++.     .-+..+.|+++..+.+..-. .-...|.+++-+|..+.
T Consensus       117 s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~  193 (319)
T KOG4714|consen  117 STDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQH  193 (319)
T ss_pred             echHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCccccc
Confidence            98741  111111111011122223333454555442     12345666665433322222 12335999999998877


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ++++|+.||.+.+||.+.......+...            |+..+..+.|+|.     ++..|+++++||.+..||..+
T Consensus       194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~a------------hk~~i~eV~FHpk-----~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  194 LVCCGTDDGIVGLWDARNVAMPVSLLKA------------HKAEIWEVHFHPK-----NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEEecCCCeEEEEEcccccchHHHHHH------------hhhhhhheeccCC-----CchheeEecCCCcEEEEcCCC
Confidence            8899999999999999987544443333            6788999999997     889999999999999999986

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.39  E-value=1.8e-09  Score=92.39  Aligned_cols=266  Identities=15%  Similarity=0.086  Sum_probs=158.7

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN  107 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  107 (375)
                      +..++.++.+|.|..+|..+|+.+...............  ++..++.++.++.+..+|..+++..-....    ...+.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~  138 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVL  138 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc----Cceee
Confidence            457888888899999999999987766543322222222  466788888899999999988765433222    12222


Q ss_pred             E-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce-----eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194          108 Q-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       108 ~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  181 (375)
                      + ...  .+..++.++.++.+..+|.++++.+..+. ......     .+.... + . .++.+..++.+..+|.++|+.
T Consensus       139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~  212 (377)
T TIGR03300       139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQP  212 (377)
T ss_pred             cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCE
Confidence            1 111  34567778889999999999998877765 222111     111222 2 3 577888899999999999987


Q ss_pred             ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194          182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~  261 (375)
                      +.......+.....      ......+.-+|.    -.+..+++++.+|.++.||..+++.....               
T Consensus       213 ~W~~~~~~~~g~~~------~~~~~~~~~~p~----~~~~~vy~~~~~g~l~a~d~~tG~~~W~~---------------  267 (377)
T TIGR03300       213 LWEQRVALPKGRTE------LERLVDVDGDPV----VDGGQVYAVSYQGRVAALDLRSGRVLWKR---------------  267 (377)
T ss_pred             eeeeccccCCCCCc------hhhhhccCCccE----EECCEEEEEEcCCEEEEEECCCCcEEEee---------------
Confidence            76654331110000      000001111110    02567888888999999999876422110               


Q ss_pred             cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  341 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  341 (375)
                                             ....    ......     ++..++.++.||.|..+|..+++...         ...
T Consensus       268 -----------------------~~~~----~~~p~~-----~~~~vyv~~~~G~l~~~d~~tG~~~W---------~~~  306 (377)
T TIGR03300       268 -----------------------DASS----YQGPAV-----DDNRLYVTDADGVVVALDRRSGSELW---------KND  306 (377)
T ss_pred             -----------------------ccCC----ccCceE-----eCCEEEEECCCCeEEEEECCCCcEEE---------ccc
Confidence                                   1111    112222     34567777889999999999885331         110


Q ss_pred             cccc-ceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          342 NLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       342 ~~~~-~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .... .......   .+..|++++.||.|+++|.
T Consensus       307 ~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       307 ELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             cccCCccccCEE---ECCEEEEEeCCCEEEEEEC
Confidence            1011 1111111   3457888899999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.38  E-value=4.5e-10  Score=84.82  Aligned_cols=264  Identities=11%  Similarity=0.029  Sum_probs=159.9

Q ss_pred             CCCcEEEEecccCc--eeeEeeecCccEEEEEEeC-----CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeE
Q 017194           36 EDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ  108 (375)
Q Consensus        36 ~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  108 (375)
                      ....+-+|+..+..  .++..       ..+.|.|     .-.+|+.|+..|.+.+|...+.+..  +.....|...|+-
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h--~~~cd~snn~v~~  120 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH--LYQCDVSNNDVTL  120 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccc--eeeecccccchhh
Confidence            44567777776544  22222       2344544     3457899999999999999864322  2222222333322


Q ss_pred             EEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEe
Q 017194          109 IVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVN  186 (375)
Q Consensus       109 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~  186 (375)
                      +.-..+ .-.+..++.|.++++.+++-+.....+. ...-.+.+++++++++ .+++.+....|..|.+... +.+..+.
T Consensus       121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h-~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~  198 (344)
T KOG4532|consen  121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH-NQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIY  198 (344)
T ss_pred             hhhhcccccceeeccCCcceeEEEEecCcccceee-ccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeE
Confidence            221112 2236677788889988887554433332 1123488999999998 6888888899999998753 2222222


Q ss_pred             cCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                      ...           ....-.+..|+.      +...+|++.+||++.|||++....+.....                  
T Consensus       199 ~a~-----------t~D~gF~~S~s~------~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s------------------  243 (344)
T KOG4532|consen  199 EAP-----------TSDHGFYNSFSE------NDLQFAVVFQDGTCAIYDVRNMATPMAEIS------------------  243 (344)
T ss_pred             ecc-----------cCCCceeeeecc------CcceEEEEecCCcEEEEEecccccchhhhc------------------
Confidence            110           233445677777      788999999999999999997543322221                  


Q ss_pred             eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc-c
Q 017194          267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-K  345 (375)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~  345 (375)
                                       .+-..|.+.++.+.|++.++.. +|...-.-+.+.+-|+++....+.....+-  ....|. .
T Consensus       244 -----------------strp~hnGa~R~c~Fsl~g~lD-LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d--~~~~~~tq  303 (344)
T KOG4532|consen  244 -----------------STRPHHNGAFRVCRFSLYGLLD-LLFISEHFSRVHVVDTRNYVNHQVIVIPDD--VERKHNTQ  303 (344)
T ss_pred             -----------------ccCCCCCCceEEEEecCCCcce-EEEEecCcceEEEEEcccCceeeEEecCcc--cccccccc
Confidence                             1334589999999999544443 344444457899999999865432211111  122333 3


Q ss_pred             ceeeeeecCCCCCcEEEeeCC
Q 017194          346 KVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       346 ~v~~~~~~~~~~~~l~s~~~d  366 (375)
                      .|..-+|+. +++.+.+.+++
T Consensus       304 ~ifgt~f~~-~n~s~~v~~e~  323 (344)
T KOG4532|consen  304 HIFGTNFNN-ENESNDVKNEL  323 (344)
T ss_pred             ccccccccC-CCcccccccch
Confidence            477777876 55555555544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.37  E-value=2.5e-09  Score=82.03  Aligned_cols=231  Identities=12%  Similarity=0.147  Sum_probs=133.2

Q ss_pred             EEEeCCCCeEEEEcCCCeEEEEECCCCC--cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE
Q 017194           64 LCFKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL  141 (375)
Q Consensus        64 l~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  141 (375)
                      ++.+.+|+.||..- |..|.|-..+++-  ........+.....-..++|+||+..||.+...|+|+++|+.. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            56678888666544 7777776655321  1111112222234567899999999999999999999999864 444444


Q ss_pred             ecC------cccceeEEEEeeCC-----CcEEEEeecCCeEEEeeCCC-----CCcceEEecCCCCCCCCCCcccCCCce
Q 017194          142 RAG------HSSICSSVQFIPWK-----PWEVISGGLDSKLVMWDFSK-----GRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       142 ~~~------~~~~v~~~~~~~~~-----~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                      ...      -...|..|.|.+..     .+.|++-..+|.++-|-+..     .+....+.+.          ...+..|
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~----------~~yp~Gi  150 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS----------SHYPHGI  150 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec----------ccCCCce
Confidence            311      23466777776543     23577777888888776532     2233344332          1135789


Q ss_pred             eEEeecCCccccCCCCEEEEEecCC-----------cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeec
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDG-----------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ  274 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~  274 (375)
                      .++.++|      ..++|++|+...           -+..|.+-++..-.+..........   ..+..     .+... 
T Consensus       151 ~~~vy~p------~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~---~~~~~-----~~~~~-  215 (282)
T PF15492_consen  151 NSAVYHP------KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT---ASSKR-----RGLLR-  215 (282)
T ss_pred             eEEEEcC------CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc---ccccc-----cceee-
Confidence            9999999      578887776432           2344444332211111100000000   00000     00000 


Q ss_pred             CCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          275 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                        ....+...........|..|..|   |||+.||+...+|.|.+|++.+-.
T Consensus       216 --~~~~~~fs~~~~~~d~i~kmSlS---Pdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  216 --IPSFKFFSRQGQEQDGIFKMSLS---PDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             --ccceeeeeccccCCCceEEEEEC---CCCCEEEEEEcCCeEEEEecCcch
Confidence              00111111222346789999999   999999999999999999999873

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.37  E-value=6e-09  Score=97.17  Aligned_cols=323  Identities=16%  Similarity=0.142  Sum_probs=192.5

Q ss_pred             CceeEEEEecCCCCEEEEeC-CCC--cEEEEecccCc---eeeEee-----ecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194           16 ATATCCIASRDRPGFVASSG-EDG--CICWFDLRSKD---VQLVTD-----VGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~-~d~--~i~iw~~~~~~---~~~~~~-----~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      ..+...+|.+.....+++.+ ...  .|.+-......   .+..+.     .....|.++.+.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            35677778776444433333 322  34444433222   223332     23568999999999999999999999999


Q ss_pred             E----ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           85 F----DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        85 w----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      .    +..+. ..+.+...   ...|.+++||||+..|+..+.++++.+.+ ++..++.... -+...     |   |..
T Consensus       102 ~~~~~~~~~~-~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~-l~~~~-----~---~~~  167 (928)
T PF04762_consen  102 VREDPDPDED-EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVP-LDSDD-----F---GES  167 (928)
T ss_pred             EEccCCCCCc-eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEee-cCccc-----c---CCC
Confidence            9    54432 23444444   67899999999999999999999998876 4555555544 22211     1   111


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceE-E-ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---C---CcE
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKI-V-NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---D---GVV  232 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---d---g~i  232 (375)
                      ..++.+...+=.-|.=..++.... . ....|.. + .........-..|+|..      ||.++|+.+.   .   ..+
T Consensus       168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~-d-~~~~s~dd~~~~ISWRG------DG~yFAVss~~~~~~~~R~i  239 (928)
T PF04762_consen  168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV-D-EGKLSWDDGRVRISWRG------DGEYFAVSSVEPETGSRRVI  239 (928)
T ss_pred             ceeeeccCcccCccCcchhhhhhhhccCCCCCcc-c-cCccccCCCceEEEECC------CCcEEEEEEEEcCCCceeEE
Confidence            244444333222222122222111 0 0000100 0 00110234567788987      8999999885   2   479


Q ss_pred             EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeec---------CCcceeEeeeeecCCCccEEEEEEeecCC
Q 017194          233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---------SGGKRLHLDYSVGGHTAAASCVAFSMFGE  303 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  303 (375)
                      +||+-. +.... ...+.......++|.|.|+.++.......         ...+..+....+......|..+.|+   +
T Consensus       240 RVy~Re-G~L~s-tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn---~  314 (928)
T PF04762_consen  240 RVYSRE-GELQS-TSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN---S  314 (928)
T ss_pred             EEECCC-ceEEe-ccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC---C
Confidence            999987 33222 22244556778999999999997543111         1111222222233446789999999   9


Q ss_pred             CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          304 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       304 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |+..||..-.|. |.+|-..+..-        .++...  .....+..+.|+|.+...|.....+|.+..+++
T Consensus       315 ds~iLAv~~~~~-vqLWt~~NYHW--------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  315 DSEILAVWLEDR-VQLWTRSNYHW--------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCEEEEEecCC-ceEEEeeCCEE--------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            999999977665 99999988742        222111  122334558999977777888887777766554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.34  E-value=2.8e-11  Score=96.23  Aligned_cols=163  Identities=17%  Similarity=0.195  Sum_probs=119.6

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc-ccccccccCCCcceeEEEEcCCCCeEEEEeCCC---cEEEEeCcCc
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQH  135 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~  135 (375)
                      ....+..++.+++++.+..+....++++..... .+.+..... ...-+.+.|..+...+..+..-|   .+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            344556678888898888888887888765433 233332222 23344555555555555554444   4555555444


Q ss_pred             eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      .... +- +|-+.++.++++||++ +++++..|..|++-.......+..+-++            |...|..+++.+   
T Consensus       143 ~~~~-~l-GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclG------------H~eFVS~isl~~---  204 (390)
T KOG3914|consen  143 RCEP-IL-GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLG------------HKEFVSTISLTD---  204 (390)
T ss_pred             Ccch-hh-hhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccc------------cHhheeeeeecc---
Confidence            4433 33 7999999999999998 8999999999999998887788888877            889999999986   


Q ss_pred             ccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          216 LDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                          +..|++|+.|++|++||+.+++.+..
T Consensus       205 ----~~~LlS~sGD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  205 ----NYLLLSGSGDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             ----CceeeecCCCCcEEEEecccCCcccc
Confidence                77899999999999999999877643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.34  E-value=4.9e-11  Score=94.91  Aligned_cols=161  Identities=16%  Similarity=0.244  Sum_probs=115.5

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCce----eeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCc
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPAS   92 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~   92 (375)
                      .+..++. +++||.+..+....++++.....    ...... ...-+++.|..+......+-.-   ..+.+|....   
T Consensus        67 ~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~---  141 (390)
T KOG3914|consen   67 LVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS---  141 (390)
T ss_pred             ccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc---
Confidence            3445665 88999988888777777654432    222221 2333455555444444444333   4555665543   


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                       ......-+|-..++.++++||+++|+++..|..|++-....-..+..|-.||+..|..++.-++.  .|++++.|++++
T Consensus       142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr  218 (390)
T KOG3914|consen  142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLR  218 (390)
T ss_pred             -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence             23334456789999999999999999999999999988776666666655899999999998875  699999999999


Q ss_pred             EeeCCCCCcceEEecC
Q 017194          173 MWDFSKGRPNKIVNFG  188 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~  188 (375)
                      +||+++++.+..+.+.
T Consensus       219 ~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  219 LWDITSGKLLDTCDLS  234 (390)
T ss_pred             EEecccCCcccccchh
Confidence            9999999998777654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.34  E-value=6.1e-09  Score=98.91  Aligned_cols=280  Identities=12%  Similarity=0.074  Sum_probs=158.9

Q ss_pred             EEEEEeCC-CCeEEEEcCCCeEEEEECCCCCccccccccc-----------CCCcceeEEEEcCCCCeEEEEe-CCCcEE
Q 017194           62 TSLCFKSG-NEDIIYVSSGKEVKSFDVHMPASWRPLESYN-----------YNKEEINQIVCNPKSSFLACAD-DGGDVK  128 (375)
Q Consensus        62 ~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~  128 (375)
                      ..+++++. ++.+++-+..+.|+++|... .....+....           ..-.....+++.++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35778764 55666666778999999863 2221111100           0112357889999888766655 456799


Q ss_pred             EEeCcCceeeeeEecCc-----------------ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec-CC-
Q 017194          129 IIDIRQHCLYKSLRAGH-----------------SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GL-  189 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~-  189 (375)
                      ++|+.++.. .++. +-                 -.....++++|++..++++.+.++.|++||..++... .+.. +. 
T Consensus       650 ~id~~~~~V-~tla-g~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~  726 (1057)
T PLN02919        650 EIDFVNETV-RTLA-GNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE  726 (1057)
T ss_pred             EEecCCCEE-EEEe-ccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence            999876543 3332 10                 1134689999955547788888999999998876432 2210 00 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeec-cccccee
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS-KVNIRDA  267 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~  267 (375)
                      ............-.....|+++|      +++ ++++-+.++.|++||+.++..................+. .+|    
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavsp------dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG----  796 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSP------DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG----  796 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeC------CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC----
Confidence            00000000000113457789988      677 445555678999999986532111000000000000000 000    


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhh----hhhccc
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL----IKNINL  343 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~  343 (375)
                                  ..    ....-.....++++   ++|.++++-..++.|++||..++........+..-    ....+.
T Consensus       797 ------------~g----~~~~l~~P~Gvavd---~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        797 ------------VG----SEVLLQHPLGVLCA---KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ------------ch----hhhhccCCceeeEe---CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence                        00    00011223578899   89999999999999999999886432111000000    001122


Q ss_pred             ccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          344 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       344 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      -.....+++++ +|+.+++-+.+++|++|+++
T Consensus       858 l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        858 LSEPAGLALGE-NGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             cCCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence            23577889998 89888888899999999974

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.34  E-value=1.1e-11  Score=105.98  Aligned_cols=259  Identities=17%  Similarity=0.177  Sum_probs=170.0

Q ss_pred             eeEEEEecCC-CCEEEEeCCCCcEEEEecccC---ceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCCc
Q 017194           18 ATCCIASRDR-PGFVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        18 i~~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      |-.+.|+|.. ..+-++......-.+|++...   .....+.+|...|+.+.|+|+.. .+++++.|..+..||+++.. 
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-  148 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-  148 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-
Confidence            5567787652 123333444456778987543   33556778999999999998654 67888999999999998753 


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                       .++.....-...-..+.|+.....+++.+....|.+||.+.+ .++..++ +|...|+.++|...-...+.+++.|++|
T Consensus       149 -~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tv  226 (1081)
T KOG0309|consen  149 -RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTV  226 (1081)
T ss_pred             -cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCce
Confidence             334443333556778999986666666667788999999865 5678888 8999999999987554479999999999


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      ++||.............            ...++..-.+.|.    .+|..+.-.-.+..+.+++-+........     
T Consensus       227 kfw~y~kSt~e~~~~vt------------t~~piw~~r~~Pf----g~g~~~mp~~G~n~v~~~~c~n~d~e~n~-----  285 (1081)
T KOG0309|consen  227 KFWDYSKSTTESKRTVT------------TNFPIWRGRYLPF----GEGYCIMPMVGGNMVPQLRCENSDLEWNV-----  285 (1081)
T ss_pred             eeecccccccccceecc------------ccCcceecccccc----CceeEeccccCCeeeeeccccchhhhhcc-----
Confidence            99998754332222211            2345555555552    12333332223334555554432111100     


Q ss_pred             CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecC-------CCCcEEEEecCCCeEEEEeCCC
Q 017194          252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG-------ERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                               ....+.++++.||...|....|-.-.       ...-.|+|=+.|..+++|-+.+
T Consensus       286 -------------------------~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  286 -------------------------FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             -------------------------ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                                     11235678899999888776664110       1123699999999999999876


Q ss_pred             c
Q 017194          325 F  325 (375)
Q Consensus       325 ~  325 (375)
                      .
T Consensus       341 ~  341 (1081)
T KOG0309|consen  341 Q  341 (1081)
T ss_pred             H
Confidence            4

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=2.1e-10  Score=98.25  Aligned_cols=194  Identities=12%  Similarity=0.140  Sum_probs=143.1

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe--eecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT--DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ++|.||.+.|.-+.|+.. .+.|-|+..+|.|.+|-+-+|.-...+  ....+.|.+++|+.+|..+...-.||.|.+=.
T Consensus        65 QtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            578999999999999988 788999999999999999887654333  22467789999999999999999999998888


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-------eee----eEecCcccceeEEEEe
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-------LYK----SLRAGHSSICSSVQFI  155 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~~v~~~~~~  155 (375)
                      ++..+.+..  .++  ......+.|++|.+.++.+-.+|.+.++|....-       +.-    .+. .....+-.+.|.
T Consensus       144 vdGNRIwgK--eLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s-~~~~kia~i~w~  218 (1189)
T KOG2041|consen  144 VDGNRIWGK--ELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS-NFPTKIAEIEWN  218 (1189)
T ss_pred             eccceecch--hcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec-CCCccccceeec
Confidence            775433221  111  2345578999999999888899999999975321       100    111 112235556653


Q ss_pred             --------eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          156 --------PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       156 --------~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                              |+.+ .|+.+..+|.+.+..-.+......+..+              -.+....|++      +|..|++++
T Consensus       219 ~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~dtg--------------m~~vgakWnh------~G~vLAvcG  277 (1189)
T KOG2041|consen  219 TGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVDTG--------------MKIVGAKWNH------NGAVLAVCG  277 (1189)
T ss_pred             cCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEecc--------------cEeecceecC------CCcEEEEcc
Confidence                    4666 7999999999998776655555555533              5788899999      899999988


Q ss_pred             cC
Q 017194          228 GD  229 (375)
Q Consensus       228 ~d  229 (375)
                      .+
T Consensus       278 ~~  279 (1189)
T KOG2041|consen  278 ND  279 (1189)
T ss_pred             Cc
Confidence            65

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.5e-09  Score=90.34  Aligned_cols=235  Identities=15%  Similarity=0.196  Sum_probs=153.5

Q ss_pred             eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC--eEEE-----EcCCCeEEEEECCCCC
Q 017194           19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIY-----VSSGKEVKSFDVHMPA   91 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~-----~~~d~~i~iwd~~~~~   91 (375)
                      ++..|++| .. |+.--..+.+.+|+....+. ..-..|...|+.+.++|.+.  .+++     .+.-..++||......
T Consensus       129 W~~qfs~d-Es-l~arlv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~  205 (566)
T KOG2315|consen  129 WVPQFSID-ES-LAARLVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG  205 (566)
T ss_pred             cccccccc-hh-hhhhhhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence            57889888 33 33333345799999876432 22234678899999998633  3333     2334689999876332


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEE---EEeCC---------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLA---CADDG---------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      ....+..-..-...=..+.|++-|.-|+   +..-|         .++++.++......-.+.  -.++|.++.|+|++.
T Consensus       206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHDVTWSPSGR  283 (566)
T ss_pred             ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceEEEECCCCC
Confidence            2222222111123344577887665432   22223         368888887445544444  578999999999997


Q ss_pred             cE-EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---CCcEEEE
Q 017194          160 WE-VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVI  235 (375)
Q Consensus       160 ~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~  235 (375)
                      .+ ++-|..-.++.+||++ +.++..+.               +++-+.+-|+|      .|++++.++-   -|.+-+|
T Consensus       284 EF~VvyGfMPAkvtifnlr-~~~v~df~---------------egpRN~~~fnp------~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  284 EFAVVYGFMPAKVTIFNLR-GKPVFDFP---------------EGPRNTAFFNP------HGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             EEEEEEecccceEEEEcCC-CCEeEeCC---------------CCCccceEECC------CCCEEEEeecCCCCCceEEE
Confidence            32 2335567789999987 55665553               45678899999      7999988875   4799999


Q ss_pred             eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC--
Q 017194          236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--  313 (375)
Q Consensus       236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~--  313 (375)
                      |..+.+.                                        +..+..  ..-+-+.|+   |||++++|+..  
T Consensus       342 Dv~n~K~----------------------------------------i~~~~a--~~tt~~eW~---PdGe~flTATTaP  376 (566)
T KOG2315|consen  342 DVPNRKL----------------------------------------IAKFKA--ANTTVFEWS---PDGEYFLTATTAP  376 (566)
T ss_pred             eccchhh----------------------------------------cccccc--CCceEEEEc---CCCcEEEEEeccc
Confidence            9997432                                        223332  223456899   99999998874  


Q ss_pred             ----CCeEEEEeCCCc
Q 017194          314 ----DKLVKVWDCSRF  325 (375)
Q Consensus       314 ----dg~i~iwd~~~~  325 (375)
                          |+.++||++...
T Consensus       377 RlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  377 RLRVDNGIKIWHYTGS  392 (566)
T ss_pred             cEEecCCeEEEEecCc
Confidence                788999998775

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=8.3e-11  Score=90.67  Aligned_cols=266  Identities=14%  Similarity=0.171  Sum_probs=162.8

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC--cccccccccCCC------------cceeEEEEcCCC--CeEEEE
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNK------------EEINQIVCNPKS--SFLACA  121 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~  121 (375)
                      ...|+++.|...|.+|++|...|.|.++.-+...  ..+.+..++.|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5679999999999999999999999999866432  233344444443            357778887654  346666


Q ss_pred             eCCCcEEEEeCcCcee------------------------------------------eeeEecCcccceeEEEEeeCCC
Q 017194          122 DDGGDVKIIDIRQHCL------------------------------------------YKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus       122 ~~dg~i~iwd~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      +.|.+|++|.+.....                                          .+.+...|..-++++.|..+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            6899999998753210                                          0011125666788999998876


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                       .+++ ..|=.|.+|++.-......+..-.|.....     -...|++..|+|.     ....+...+..|.|++-|++.
T Consensus       186 -t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmee-----LteVItSaeFhp~-----~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         186 -TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEE-----LTEVITSAEFHPE-----MCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             -eeee-ccceeeeeccccccCCceEEEeccCccHHH-----HHHHHhhcccCHh-----HcceEEEecCCCcEEehhhhh
Confidence             4554 457789999987543333322111110000     1235788889886     667888888999999999994


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      ...-......       ....-||                 .-..-+.+-...|..+.|+   ++|+|+++-+. -+|+|
T Consensus       254 ~alcdn~~kl-------fe~~~D~-----------------v~~~ff~eivsSISD~kFs---~ngryIlsRdy-ltvki  305 (460)
T COG5170         254 SALCDNSKKL-------FELTIDG-----------------VDVDFFEEIVSSISDFKFS---DNGRYILSRDY-LTVKI  305 (460)
T ss_pred             hhhccCchhh-------hhhccCc-----------------ccchhHHHHhhhhcceEEc---CCCcEEEEecc-ceEEE
Confidence            3211100000       0000000                 0000122234578889999   99999998877 68999


Q ss_pred             EeCCCceeeeecchhhhhhhhccc------------ccce---eeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          320 WDCSRFQGVQTSINNDLLIKNINL------------NKKV---NWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       320 wd~~~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      ||++..+.        ++.+..-|            ...|   ..+.|+. |.+.+.+|+......++
T Consensus       306 wDvnm~k~--------pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiy  364 (460)
T COG5170         306 WDVNMAKN--------PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             EecccccC--------CceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeee
Confidence            99987652        22222222            1222   3356666 66778888776655554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=1.9e-10  Score=88.71  Aligned_cols=215  Identities=11%  Similarity=0.091  Sum_probs=142.7

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-----eeeEeeec------------CccEEEEEEeCCC--CeEEE
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVG------------NGPVTSLCFKSGN--EDIIY   75 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~------------~~~v~~l~~~~~~--~~l~~   75 (375)
                      .+.|+++.|... |.+|++|...|.|.++.-+...     ....++.|            ...|..+.|..++  ..++.
T Consensus        26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            467999999998 8999999999999999865432     12334444            3568889887544  35677


Q ss_pred             EcCCCeEEEEECCCCCc-------------------cccc--------------------ccc-cCCCcceeEEEEcCCC
Q 017194           76 VSSGKEVKSFDVHMPAS-------------------WRPL--------------------ESY-NYNKEEINQIVCNPKS  115 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~~-------------------~~~~--------------------~~~-~~~~~~v~~~~~~~~~  115 (375)
                      .+.|.+|++|.+.....                   +...                    +.+ ..|...|.++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            78899999998764210                   0000                    001 2466778899999998


Q ss_pred             CeEEEEeCCCcEEEEeCcCce---eeeeEecCcc-----cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc------
Q 017194          116 SFLACADDGGDVKIIDIRQHC---LYKSLRAGHS-----SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP------  181 (375)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------  181 (375)
                      ..++++ .|-.|.+|+++-..   .+-.++ .|.     .-|++..|+|....++.-.+..|.|++-|++....      
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            888877 56789999986321   222333 332     35788899998876788888999999999985321      


Q ss_pred             ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      +......   .........-...|..+.|++      +|+++++-+. -++++||.+..+.
T Consensus       263 lfe~~~D---~v~~~ff~eivsSISD~kFs~------ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         263 LFELTID---GVDVDFFEEIVSSISDFKFSD------NGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             hhhhccC---cccchhHHHHhhhhcceEEcC------CCcEEEEecc-ceEEEEecccccC
Confidence            1111111   000000000124577888998      7888887765 4899999987543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=3.2e-09  Score=88.41  Aligned_cols=276  Identities=12%  Similarity=0.129  Sum_probs=177.0

Q ss_pred             ceeEEEEecCCCCEEEEeCC-----------CCcEEEEecccCceeeEeee--cCccEE-EEEEeCCCCeEEEEcCCCeE
Q 017194           17 TATCCIASRDRPGFVASSGE-----------DGCICWFDLRSKDVQLVTDV--GNGPVT-SLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~-----------d~~i~iw~~~~~~~~~~~~~--~~~~v~-~l~~~~~~~~l~~~~~d~~i   82 (375)
                      .|.-+.|||. .++|+|-+.           ...++|||+.+|...+.+..  ....+. -..||.|++++|--.. ..|
T Consensus       251 ~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  251 GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI  328 (698)
T ss_pred             CceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence            4777899999 899998753           25799999999998888765  233333 3589999999887664 678


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-----CCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      .||+...   ...+..-.-....|....|+|.++.||.-..     -..+.+..+.+++.+++-. -++-.=..+.|-.+
T Consensus       329 sIyEtps---f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~  404 (698)
T KOG2314|consen  329 SIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKS  404 (698)
T ss_pred             EEEecCc---eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccC
Confidence            9999764   2222222222567999999999988886542     2346777777777766655 44433344667777


Q ss_pred             CCcEEEEe----------ecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          158 KPWEVISG----------GLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       158 ~~~~l~~~----------~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      |.+ |+.-          +.-..+.|+.++... ++..+.+              ...+...+|-|      .|..+++-
T Consensus       405 gdy-LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel--------------ke~vi~FaWEP------~gdkF~vi  463 (698)
T KOG2314|consen  405 GDY-LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL--------------KESVIAFAWEP------HGDKFAVI  463 (698)
T ss_pred             CcE-EEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--------------chheeeeeecc------CCCeEEEE
Confidence            773 4331          112245566666443 3344443              36788899988      68777765


Q ss_pred             ec---CCcEEEEeCCC-cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee--------e-eecCCCccE
Q 017194          227 KG---DGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD--------Y-SVGGHTAAA  293 (375)
Q Consensus       227 ~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~v  293 (375)
                      +.   ..++.+|.+.+ .................+.++|.|++++..+.....  ..+...        . ....| ...
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~--g~l~F~D~~~a~~k~~~~~eh-~~a  540 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRR--GDLEFYDTDYADLKDTASPEH-FAA  540 (698)
T ss_pred             EccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccc--cceEEEecchhhhhhccCccc-ccc
Confidence            53   35788998884 333333334444667788999999998864322110  011110        0 11122 245


Q ss_pred             EEEEEeecCCCCcEEEEecC------CCeEEEEeCCCc
Q 017194          294 SCVAFSMFGERGKYLISGGN------DKLVKVWDCSRF  325 (375)
Q Consensus       294 ~~~~~s~~~~~~~~l~s~~~------dg~i~iwd~~~~  325 (375)
                      +.+.|.   |.|+|+++++.      |.--+||+.+..
T Consensus       541 t~veWD---PtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  541 TEVEWD---PTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             ccceEC---CCCCEEEEeeehhhhccccceEEEEeecH
Confidence            678899   99999999875      556788887764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.28  E-value=9.9e-09  Score=84.03  Aligned_cols=142  Identities=16%  Similarity=0.184  Sum_probs=111.8

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCC-cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      +|.+.|.=..+.-+ ++-++.|..|| .+-|+|..+++ .+.+...-+.|.++..+++|++++.+.....|.+.|+++++
T Consensus       357 ~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         357 GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            57778888888877 66888999998 89999998776 45566667899999999999999999888899999999876


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCC----cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      . +.+..-  ..+-|+.+.|+|+++++|-+--+|    .|+++|+..++....-.  ..+.=.+-+|.|+++++
T Consensus       435 v-~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         435 V-RLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             e-eEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence            4 333222  256799999999999999887665    58999999887755443  33344667899999853

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.28  E-value=1e-10  Score=87.78  Aligned_cols=167  Identities=16%  Similarity=0.164  Sum_probs=107.2

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-eeEeeecCccEEEEEEeCCCCeEEEEcC-----CC
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSS-----GK   80 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----d~   80 (375)
                      ..+.+..|+++-.+=+.+-. ++-++++..||.+.+.+.+.-.. ...+..-...-.+.+....++.+.++..     -+
T Consensus        81 ~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             ceeeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence            34455555554444333333 56799999999999999775211 1111111111122233344555544432     24


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEEEeeCC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~  158 (375)
                      ..+.|+++..+....- ..  ....|.+++-+|. .+.+++|+.||.+.+||.+..... ..++ .|+.+++.+.|+|..
T Consensus       160 ~~~a~~~~p~~t~~~~-~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPS-KK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKN  235 (319)
T ss_pred             ceeeeccccccccccc-cc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCCC
Confidence            5677776632221111 11  1344889999984 566788889999999999987543 4455 899999999999988


Q ss_pred             CcEEEEeecCCeEEEeeCCC
Q 017194          159 PWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~~  178 (375)
                      +..|+++++||.+.-||..+
T Consensus       236 p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chheeEecCCCcEEEEcCCC
Confidence            77899999999999999774

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=8.4e-09  Score=88.32  Aligned_cols=203  Identities=6%  Similarity=0.030  Sum_probs=124.9

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCC-EEEEeCC---CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-C
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPG-FVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-G   79 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~-~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d   79 (375)
                      +...+.+... +.+....|+|| ++ .++..+.   +..|.++|+.+++...... ..+......|+|||+.++.... +
T Consensus       178 g~~~~~~~~~-~~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~  254 (419)
T PRK04043        178 LTYQKVIVKG-GLNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPK  254 (419)
T ss_pred             CCceeEEccC-CCeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccC
Confidence            3334444433 36778999999 65 3553322   3569999998887644443 4555667889999987765432 3


Q ss_pred             --CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-C--cEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194           80 --KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-G--DVKIIDIRQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        80 --~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                        ..|.++|+.+++ ...+...   ........|+|||+.|+..+.. +  .|.++|+.+++..+... . ...  ...|
T Consensus       255 g~~~Iy~~dl~~g~-~~~LT~~---~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~-g~~--~~~~  326 (419)
T PRK04043        255 GQPDIYLYDTNTKT-LTQITNY---PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-H-GKN--NSSV  326 (419)
T ss_pred             CCcEEEEEECCCCc-EEEcccC---CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-C-CCc--CceE
Confidence              478888887654 3333332   2223456899999988776632 2  68888888776644332 1 111  2489


Q ss_pred             eeCCCcEEEEeecC--------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          155 IPWKPWEVISGGLD--------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       155 ~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      +|+|++++++....        ..|.+.|+.++.. ..+...              .......|+|      ||+.++..
T Consensus       327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~--------------~~~~~p~~SP------DG~~I~f~  385 (419)
T PRK04043        327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN--------------GVNQFPRFSS------DGGSIMFI  385 (419)
T ss_pred             CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC--------------CCcCCeEECC------CCCEEEEE
Confidence            99999544444432        3688888877653 333211              1223467888      78887776


Q ss_pred             ecCC---cEEEEeCCC
Q 017194          227 KGDG---VVDVINIES  239 (375)
Q Consensus       227 ~~dg---~i~i~d~~~  239 (375)
                      ..++   .|.+.++..
T Consensus       386 ~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        386 KYLGNQSALGIIRLNY  401 (419)
T ss_pred             EccCCcEEEEEEecCC
Confidence            5432   355666654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=8.6e-10  Score=89.34  Aligned_cols=293  Identities=14%  Similarity=0.126  Sum_probs=184.9

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc---CceeeEeeecCccEEEEEEeCCCCeEEEEcC-CCeEEEEECC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVH   88 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd~~   88 (375)
                      -|.+.|+.+....  .+++.+++.||.++.|.-..   -+.++.+..|-..|.+++.+-++..+.+.+. |..++++|++
T Consensus         7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            4888999877665  47999999999999998543   1235556678899999999999999999777 9999999998


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCC--CeEEEE-eCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKS--SFLACA-DDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      +-.....++.... .+.+. ...++..  ..|+++ -.++.+.++|-.... ....++.-|..+|..+.+.|-+. .+++
T Consensus        85 n~DminmiKL~~l-Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vS  161 (558)
T KOG0882|consen   85 NFDMINMIKLVDL-PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVS  161 (558)
T ss_pred             ccchhhhcccccC-CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceee
Confidence            6433322222111 22222 2223321  134433 367899999976442 33334437899999999999998 6889


Q ss_pred             eecCCeEEEeeCCC-C-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          165 GGLDSKLVMWDFSK-G-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       165 ~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ....|.|.-|.... - .+...+..........-...-......++.|+|      ++..+.+-+.|..|++++.++++.
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp------~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP------DGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc------ccCcccccCcccEEEEEEeccchh
Confidence            88999999999773 1 111111111111111111112345678999999      799999999999999999999876


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc-cEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                      ............... -+|-       +.....-.+++.....+..|.. .-..+.|.   ..|++|+-|+.=| |++.+
T Consensus       236 vqeiDE~~t~~~~q~-ks~y-------~l~~VelgRRmaverelek~~~~~~~~~~fd---es~~flly~t~~g-ikvin  303 (558)
T KOG0882|consen  236 VQEIDEVLTDAQYQP-KSPY-------GLMHVELGRRMAVERELEKHGSTVGTNAVFD---ESGNFLLYGTILG-IKVIN  303 (558)
T ss_pred             hhhhhccchhhhhcc-cccc-------ccceeehhhhhhHHhhHhhhcCcccceeEEc---CCCCEEEeeccee-EEEEE
Confidence            665433221110000 0000       0000111122222233444433 23456677   8899999998765 89999


Q ss_pred             CCCceee
Q 017194          322 CSRFQGV  328 (375)
Q Consensus       322 ~~~~~~~  328 (375)
                      +.++...
T Consensus       304 ~~tn~v~  310 (558)
T KOG0882|consen  304 LDTNTVV  310 (558)
T ss_pred             eecCeEE
Confidence            9988665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=1.5e-09  Score=93.98  Aligned_cols=156  Identities=14%  Similarity=0.185  Sum_probs=125.1

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC------------CeEEEEeCCCc
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS------------SFLACADDGGD  126 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~  126 (375)
                      ..-.++.|+|.| .++.|+ ...|.+-|..+   .+.++.++.|...|+.+.|.|..            -.||++...|.
T Consensus        16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             ccccccccCccc-eEEEec-CceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            335678999987 566666 66788889874   67777778889999999998731            24778888999


Q ss_pred             EEEEeCcCceeeeeEecCcccceeEEEEeeCC---CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCC
Q 017194          127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK---PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA  203 (375)
Q Consensus       127 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (375)
                      |.+||...+..+..+. .|..++..++|-+..   +.+|+.-.....+.+|+..+|+.+....+.             ..
T Consensus        91 Iil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-------------~~  156 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-------------HE  156 (1062)
T ss_pred             EEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-------------Cc
Confidence            9999999988888888 888999999998743   246777777889999999999999888765             35


Q ss_pred             ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          204 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       204 ~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      ...++.+.|.     +.+.+..-+..|.+.+-+.-
T Consensus       157 iLs~f~~DPf-----d~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  157 ILSCFRVDPF-----DSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             ceeeeeeCCC-----CcceEEEEccCceEEEEecc
Confidence            5667899886     78888888888888777654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.24  E-value=2.3e-07  Score=74.37  Aligned_cols=194  Identities=14%  Similarity=0.177  Sum_probs=127.3

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEe-CCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK-SGNEDIIYVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      ++.|.+.++.++++--..+.|..|+..+++.. .+....  ...+++. +++. |+.+... .+.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeec
Confidence            57888854788888888899999999877643 233222  6777887 6654 5555544 455669887644333332


Q ss_pred             c-cC-CCcceeEEEEcCCCCeEEEEeCC--------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           99 Y-NY-NKEEINQIVCNPKSSFLACADDG--------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        99 ~-~~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      . .. .....+.+++.|+|++.++....        |.|..++.. ++......  .-...+.|+|+|+++.++++-+..
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccccc
Confidence            2 11 34678899999999977665533        557777776 55444333  345678999999998555677888


Q ss_pred             CeEEEeeCCCCCc-ce---EE-ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          169 SKLVMWDFSKGRP-NK---IV-NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       169 ~~i~~wd~~~~~~-~~---~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      +.|..+++..... +.   .+ ....           .....-.+++..      +|++.++....+.|.++|..
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~pDG~~vD~------~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPG-----------GPGYPDGLAVDS------DGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SS-----------SSCEEEEEEEBT------TS-EEEEEETTTEEEEEETT
T ss_pred             ceeEEEeccccccceeeeeeEEEcCC-----------CCcCCCcceEcC------CCCEEEEEcCCCEEEEECCC
Confidence            9999999864332 21   11 2110           012467888887      79888887888999999987

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.23  E-value=1.5e-07  Score=71.32  Aligned_cols=150  Identities=9%  Similarity=0.073  Sum_probs=100.2

Q ss_pred             EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc
Q 017194           21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN  100 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  100 (375)
                      +...++...+++.|+..+.+.--|.++|+.+..-.. ...|.+-+.- -|++++.|+..|.+++.+.+++......... 
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-   92 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-   92 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-
Confidence            344555467888999999999999999987544321 2333333222 3678999999999999999998655554443 


Q ss_pred             CCCccee-EEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          101 YNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       101 ~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                         +.|. .....+++..+..|+.|++.+..|.++...+...+ --.+...+-+..|-.. .|..+...|.+.--..+.
T Consensus        93 ---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~-sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen   93 ---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDG-SLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             ---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCc-eEEEEeccceEEEEccCC
Confidence               2222 24466789999999999999999999988887766 2222333445555222 355555556555544443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1e-08  Score=87.77  Aligned_cols=173  Identities=14%  Similarity=0.104  Sum_probs=106.5

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-EEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP  113 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  113 (375)
                      ..|.+-|..... .+.+.... ......|+|+|+. ++..+.+   ..|.++|+.+++. ..+...   .+......|+|
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~---~g~~~~~~~SP  242 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASS---QGMLVVSDVSK  242 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecC---CCcEEeeEECC
Confidence            345555554333 33333333 7778999999985 6554443   4799999987654 333332   44566788999


Q ss_pred             CCCeEEEEe-C--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecC
Q 017194          114 KSSFLACAD-D--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       114 ~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~  188 (375)
                      ||+.++... .  +..|.++|+.+++. ..+. .+........|+|||+.++++....+  .|.+.|+.+++..+....+
T Consensus       243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g  320 (419)
T PRK04043        243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-TQIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG  320 (419)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCcE-EEcc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence            998776543 2  35688889877764 3444 33333445689999985555554444  6788888766553322111


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---------CcEEEEeCCCc
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---------GVVDVINIESE  240 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~  240 (375)
                                    ..  ...|+|      +|+.++.....         ..|.+.|+.++
T Consensus       321 --------------~~--~~~~SP------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        321 --------------KN--NSSVST------YKNYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             --------------Cc--CceECC------CCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence                          11  237888      78888776643         25777777654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.22  E-value=1.2e-07  Score=75.31  Aligned_cols=209  Identities=13%  Similarity=0.103  Sum_probs=139.8

Q ss_pred             eeEEEEecCCCCEEEEeCCCCc-EEEEecccCceeeEeeecCccEE--EEEEeCCCCeEEEEcCC-----CeEEEEECCC
Q 017194           18 ATCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGPVT--SLCFKSGNEDIIYVSSG-----KEVKSFDVHM   89 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~v~--~l~~~~~~~~l~~~~~d-----~~i~iwd~~~   89 (375)
                      ...++.+|..+..++.+-.-|+ ..+||..+++....+....+.-.  .-.|++||++|++.-.|     |.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            3457788865777777776654 78899999998877765433322  36799999999987554     7999999982


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEe------------------CCCcEEEEeCcCceeeeeEe---cCcccc
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACAD------------------DGGDVKIIDIRQHCLYKSLR---AGHSSI  148 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~---~~~~~~  148 (375)
                        ..+.+..+..|.-.-..+.+.||++.|+++.                  .+-.+...|..+++.+.+..   ..|...
T Consensus        87 --~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   87 --GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             --CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence              3566777766666677889999998887763                  13346667778888877643   137778


Q ss_pred             eeEEEEeeCCCcEEEEeecCCe-----EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194          149 CSSVQFIPWKPWEVISGGLDSK-----LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                      ++.+++.++|. .++..-..|.     -.+.-.+.++.+..+....      .....-...+-+|++++      ++.++
T Consensus       165 iRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~------~~~~~l~~Y~gSIa~~~------~g~~i  231 (305)
T PF07433_consen  165 IRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPE------EQWRRLNGYIGSIAADR------DGRLI  231 (305)
T ss_pred             eeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCCh------HHHHhhCCceEEEEEeC------CCCEE
Confidence            99999999986 3333333321     1122222333333333220      00011236789999998      68777


Q ss_pred             EEEe-cCCcEEEEeCCCcc
Q 017194          224 VVAK-GDGVVDVINIESEL  241 (375)
Q Consensus       224 ~~~~-~dg~i~i~d~~~~~  241 (375)
                      ++.+ ..|.+.+||..+++
T Consensus       232 a~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  232 AVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             EEECCCCCEEEEEECCCCC
Confidence            6665 66789999999863

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.20  E-value=1.7e-08  Score=86.70  Aligned_cols=263  Identities=13%  Similarity=0.093  Sum_probs=153.7

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCC-C-cce
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN-K-EEI  106 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~-~~v  106 (375)
                      ..++.++.+|.+..+|.++|+.+...+.......+....  +..++.+..++.+..+|.++++..-........ . ...
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            456677788999999999999877765432211111222  345777788899999999988754333221000 0 000


Q ss_pred             eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc------ceeEEEEee--CCCcEEEEeecCCeEEEeeCCC
Q 017194          107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS------ICSSVQFIP--WKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      .+...  .+..++.++.+|.+..+|..+++.+.........      ....+..+|  .+. .++.++.+|.+..+|..+
T Consensus       199 ~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~t  275 (394)
T PRK11138        199 SAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRS  275 (394)
T ss_pred             CCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCC
Confidence            11111  1235777778899999999988876554310000      001111111  233 577777899999999999


Q ss_pred             CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS  258 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  258 (375)
                      ++.+......              . ...+..        .+..+++++.+|.+..+|..+++......           
T Consensus       276 G~~~W~~~~~--------------~-~~~~~~--------~~~~vy~~~~~g~l~ald~~tG~~~W~~~-----------  321 (394)
T PRK11138        276 GQIVWKREYG--------------S-VNDFAV--------DGGRIYLVDQNDRVYALDTRGGVELWSQS-----------  321 (394)
T ss_pred             CCEEEeecCC--------------C-ccCcEE--------ECCEEEEEcCCCeEEEEECCCCcEEEccc-----------
Confidence            9877665433              1 111222        36678888899999999998864332111           


Q ss_pred             ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh
Q 017194          259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI  338 (375)
Q Consensus       259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  338 (375)
                                                .+ .+ ....+..+.     +.+|+.++.||.|.+.|..+++..         .
T Consensus       322 --------------------------~~-~~-~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG~~~---------~  359 (394)
T PRK11138        322 --------------------------DL-LH-RLLTAPVLY-----NGYLVVGDSEGYLHWINREDGRFV---------A  359 (394)
T ss_pred             --------------------------cc-CC-CcccCCEEE-----CCEEEEEeCCCEEEEEECCCCCEE---------E
Confidence                                      00 00 111122222     346778889999999999998432         2


Q ss_pred             hhcccccceee-eeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          339 KNINLNKKVNW-LCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       339 ~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ...-....+.. -.+   .+..|+.++.||.|+.++.+
T Consensus       360 ~~~~~~~~~~s~P~~---~~~~l~v~t~~G~l~~~~~~  394 (394)
T PRK11138        360 QQKVDSSGFLSEPVV---ADDKLLIQARDGTVYAITRP  394 (394)
T ss_pred             EEEcCCCcceeCCEE---ECCEEEEEeCCceEEEEeCC
Confidence            21111112221 111   23478889999999988763

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.19  E-value=2e-07  Score=74.71  Aligned_cols=225  Identities=13%  Similarity=0.090  Sum_probs=140.5

Q ss_pred             EEEEeC-CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEc-CCCCeEEEEeCCCcEEEEeCcCceeeee
Q 017194           63 SLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN-PKSSFLACADDGGDVKIIDIRQHCLYKS  140 (375)
Q Consensus        63 ~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~  140 (375)
                      ++.|.+ ++.++++-...+.|..|+..++.. ..+ ..    .....+++. +++ .++++... .+.++|+.+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~-~~----~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVI-DL----PGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEE-ES----SSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-EEE-ec----CCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence            578888 666666666789999999986532 111 11    226777777 565 55555554 456669888865443


Q ss_pred             Eec---C-cccceeEEEEeeCCCcEEEEeecC--------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          141 LRA---G-HSSICSSVQFIPWKPWEVISGGLD--------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       141 ~~~---~-~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      ...   . .....+.+++.|+|. +.++....        |.|..++.. ++...... .             -...+.|
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~-------------~~~pNGi  139 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-G-------------LGFPNGI  139 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-E-------------ESSEEEE
T ss_pred             eeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec-C-------------cccccce
Confidence            331   1 345788999999998 66665533        567777776 44333332 1             2457899


Q ss_pred             eecCCccccCCCCEEE-EEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec
Q 017194          209 AIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG  287 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~  287 (375)
                      +|+|      +++.|+ +-+..+.|..|++.......                                 ...+....+.
T Consensus       140 ~~s~------dg~~lyv~ds~~~~i~~~~~~~~~~~~---------------------------------~~~~~~~~~~  180 (246)
T PF08450_consen  140 AFSP------DGKTLYVADSFNGRIWRFDLDADGGEL---------------------------------SNRRVFIDFP  180 (246)
T ss_dssp             EEET------TSSEEEEEETTTTEEEEEEEETTTCCE---------------------------------EEEEEEEE-S
T ss_pred             EECC------cchheeecccccceeEEEeccccccce---------------------------------eeeeeEEEcC
Confidence            9999      788766 55677889998886421100                                 0112223333


Q ss_pred             CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe
Q 017194          288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  363 (375)
                      ......-.+++.   .+|++.++.-..+.|.+++.+ +         +++..+.-....+++++|..++.+.|+..
T Consensus       181 ~~~g~pDG~~vD---~~G~l~va~~~~~~I~~~~p~-G---------~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  181 GGPGYPDGLAVD---SDGNLWVADWGGGRIVVFDPD-G---------KLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             SSSCEEEEEEEB---TTS-EEEEEETTTEEEEEETT-S---------CEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CCCcCCCcceEc---CCCCEEEEEcCCCEEEEECCC-c---------cEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            333457889999   899988887788999999988 5         33333333345789999964365555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=9.1e-11  Score=91.64  Aligned_cols=163  Identities=15%  Similarity=0.197  Sum_probs=121.4

Q ss_pred             EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc--ccccc
Q 017194           21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLES   98 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~   98 (375)
                      ++|+-+-..+-++.+.+..|-+-|+++|-. +.+. ....|.++.|...++.+..|+..|.|...|++.....  .....
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            366543222335556667788999988763 3344 5778999999998999999999999999999864221  11111


Q ss_pred             ccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCcee---eeeEecCcccceeEE--EEeeCCCcEEEEeecCCeEE
Q 017194           99 YNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSV--QFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~d~~i~  172 (375)
                       -.|...|+++.... ++++|++.+.+|.|++||++.-+.   +.++. +|-..-.-+  ...+... .+++++.|...+
T Consensus       295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg-~I~s~GdDcytR  371 (425)
T KOG2695|consen  295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEG-SIFSVGDDCYTR  371 (425)
T ss_pred             -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccc-eEEEccCeeEEE
Confidence             23688999998877 788999999999999999986655   77888 886533322  3344545 788999999999


Q ss_pred             EeeCCCCCcceEEecC
Q 017194          173 MWDFSKGRPNKIVNFG  188 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~  188 (375)
                      +|.++.+..+.++.+.
T Consensus       372 iWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  372 IWSLDSGHLLCTIPFP  387 (425)
T ss_pred             EEecccCceeeccCCC
Confidence            9999999999888754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.17  E-value=4.5e-08  Score=78.17  Aligned_cols=227  Identities=16%  Similarity=0.110  Sum_probs=135.5

Q ss_pred             CCcEEEEecccCceeeEeeecC--ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           37 DGCICWFDLRSKDVQLVTDVGN--GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      +|+|..||..+|+.+.......  ....+. ..+++..+++++.++.|..||..+++..-....-    ..+.... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~----~~~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP----GPISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS----SCGGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc----cccccee-eec
Confidence            6889999999999888776421  122211 2335667888888999999999988654433331    1111111 224


Q ss_pred             CCeEEEEeCCCcEEEEeCcCceeeeeE-ecCcc---cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCC
Q 017194          115 SSFLACADDGGDVKIIDIRQHCLYKSL-RAGHS---SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLP  190 (375)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  190 (375)
                      +..+++++.++.++.+|.++++.+... . ...   ...........++ .++.+..++.|..+|+++|+.+.......+
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYL-TSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccccceeeeEecccCCcceeeeecc-ccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            456777778889999999999998874 3 221   1112223333355 688888899999999999999888876421


Q ss_pred             CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee
Q 017194          191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME  270 (375)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~  270 (375)
                      .......  ........+.+.       ++ .+++++.++.+.-+|+.+++..                           
T Consensus       154 ~~~~~~~--~~~~~~~~~~~~-------~~-~v~~~~~~g~~~~~d~~tg~~~---------------------------  196 (238)
T PF13360_consen  154 RGSSPIS--SFSDINGSPVIS-------DG-RVYVSSGDGRVVAVDLATGEKL---------------------------  196 (238)
T ss_dssp             -SS--EE--EETTEEEEEECC-------TT-EEEEECCTSSEEEEETTTTEEE---------------------------
T ss_pred             CCCccee--eecccccceEEE-------CC-EEEEEcCCCeEEEEECCCCCEE---------------------------
Confidence            1000000  000011222222       24 7777777775444498875311                           


Q ss_pred             eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          271 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                   .....  ..+..+ ..   .++..|+.++.++.|..||+++++.
T Consensus       197 -------------w~~~~--~~~~~~-~~---~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  197 -------------WSKPI--SGIYSL-PS---VDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -------------EEECS--S-ECEC-EE---CCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             -------------EEecC--CCccCC-ce---eeCCEEEEEeCCCEEEEEECCCCCE
Confidence                         11111  112221 22   5667777777999999999999853

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.17  E-value=1.6e-08  Score=76.74  Aligned_cols=159  Identities=10%  Similarity=0.005  Sum_probs=114.8

Q ss_pred             EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEE
Q 017194           30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI  109 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  109 (375)
                      .+..++.|.++++.+++-+.....+....-.+.+++++++++++++.+....|..|.+........-.........=.+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            46667888889998887655443333222348899999999999999999999999987643322111222223445678


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCcCceeeee----EecCcccceeEEEEeeCCCc-EEEEeecCCeEEEeeCCCCCcceE
Q 017194          110 VCNPKSSFLACADDGGDVKIIDIRQHCLYKS----LRAGHSSICSSVQFIPWKPW-EVISGGLDSKLVMWDFSKGRPNKI  184 (375)
Q Consensus       110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~  184 (375)
                      .|+.....+|++..||++.|||++.......    -+..|.+.++.+.|++.|.. +|+..-.-+.+.+.|+++++..+.
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            8999999999999999999999986533221    12268899999999987652 455555567899999999987777


Q ss_pred             EecC
Q 017194          185 VNFG  188 (375)
Q Consensus       185 ~~~~  188 (375)
                      +...
T Consensus       290 I~i~  293 (344)
T KOG4532|consen  290 IVIP  293 (344)
T ss_pred             EecC
Confidence            6643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.3e-08  Score=81.44  Aligned_cols=263  Identities=15%  Similarity=0.138  Sum_probs=146.6

Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      +++.+..+   .+..+-+..+...|.+++|+|..+ ++..++.+..|+|.|+++...+..+. .+ ..+++++|.-+...
T Consensus       175 v~~l~~~~---fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h  249 (463)
T KOG1645|consen  175 VQKLESHD---FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERH  249 (463)
T ss_pred             eEEeccCC---cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcc
Confidence            44554443   233445566788999999999776 78889999999999999999999888 66 78999999998887


Q ss_pred             EEEEeecCCeEEEeeCCCCCcce-EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ++..|-..|.|.+||++..+-.. .+....           ...+|..++.-+.....+.+.+|+....+  +..|++..
T Consensus       250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~-----------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~  316 (463)
T KOG1645|consen  250 VIYAGLQNGMVLVYDMRQPEGPLMELVANV-----------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF  316 (463)
T ss_pred             eeEEeccCceEEEEEccCCCchHhhhhhhh-----------ccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence            88899999999999999754322 211100           12234443332211111235555555544  56666654


Q ss_pred             cceeecccccCCCCCCceeecccc--cceeeeee--------------eecCCcce-eEeeeeecCC-CccE--EEEEEe
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEI--------------LDQSGGKR-LHLDYSVGGH-TAAA--SCVAFS  299 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g--~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~-~~~v--~~~~~s  299 (375)
                      ...-.....+.+++-.++.+.-++  +.+.....              .+..++.. ........+. ...+  ....+.
T Consensus       317 s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~  396 (463)
T KOG1645|consen  317 SAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA  396 (463)
T ss_pred             cccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceec
Confidence            332222222222333333333322  22222111              11111110 0000111010 0000  011122


Q ss_pred             ecCCCCcEEE-EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCC-CcEEEeeCCCeEEEEecC
Q 017194          300 MFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       300 ~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~v~iw~~~  375 (375)
                      +  ++..+++ .++..+.+.+||..+.         ++++.+. ...+|.+++....++ .+|++- .|..++|+..+
T Consensus       397 ~--~~nn~iv~~gd~tn~lil~D~~s~---------evvQ~l~-~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  397 V--EDNNYIVVVGDSTNELILQDPHSF---------EVVQTLA-LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             c--ccccEEEEecCCcceeEEeccchh---------heeeecc-cCcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence            1  4555555 5566788999999998         4443333 337888887765444 455555 45578887643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=6.3e-09  Score=84.48  Aligned_cols=224  Identities=13%  Similarity=0.044  Sum_probs=151.8

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCc
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQH  135 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~  135 (375)
                      |.+.|+.+.-. -.+++++++.||.++.|.-..-.....+..+..|...|.+++.+.++.++.+.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            67777776554 4578999999999999986643445667777788899999999999999999777 999999999876


Q ss_pred             eeeeeEecCcccceeEEEE--eeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeec
Q 017194          136 CLYKSLRAGHSSICSSVQF--IPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP  211 (375)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~--~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (375)
                      ..+.-++  .......+.|  +|...  .+-++.-.++.+.++|-....+...+...           .|..+|..+.+.
T Consensus        87 DminmiK--L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-----------lH~sPV~~i~y~  153 (558)
T KOG0882|consen   87 DMINMIK--LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-----------LHFSPVKKIRYN  153 (558)
T ss_pred             chhhhcc--cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc-----------cccCceEEEEee
Confidence            5544333  1111122222  22211  12334446889999997755432222111           257899999999


Q ss_pred             CCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc
Q 017194          212 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA  291 (375)
Q Consensus       212 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (375)
                      |      .+..+++....|.|.-|......+...         ..+-|.+                +.-.-+..+.....
T Consensus       154 q------a~Ds~vSiD~~gmVEyWs~e~~~qfPr---------~~l~~~~----------------K~eTdLy~f~K~Kt  202 (558)
T KOG0882|consen  154 Q------AGDSAVSIDISGMVEYWSAEGPFQFPR---------TNLNFEL----------------KHETDLYGFPKAKT  202 (558)
T ss_pred             c------cccceeeccccceeEeecCCCcccCcc---------ccccccc----------------cccchhhccccccc
Confidence            9      589999999999999999884111100         0000100                00112223334456


Q ss_pred             cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee
Q 017194          292 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  328 (375)
Q Consensus       292 ~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  328 (375)
                      ...++.|+   |+|..+.+-+.|..|++++..+++..
T Consensus       203 ~pts~Efs---p~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  203 EPTSFEFS---PDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             CccceEEc---cccCcccccCcccEEEEEEeccchhh
Confidence            77889999   99999999999999999999998654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.08  E-value=2.4e-10  Score=62.17  Aligned_cols=38  Identities=34%  Similarity=0.469  Sum_probs=36.0

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEe
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD   44 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~   44 (375)
                      ++++++++|.++|++|+|+|+ +.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            567899999999999999999 89999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=2.1e-07  Score=71.73  Aligned_cols=198  Identities=14%  Similarity=0.117  Sum_probs=117.8

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-------cCccEEEEEEeCCC------CeEEEEcCCCeEEE
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-------GNGPVTSLCFKSGN------EDIIYVSSGKEVKS   84 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-------~~~~v~~l~~~~~~------~~l~~~~~d~~i~i   84 (375)
                      =+-++|+|| +.+||.+...|+|+++|+...+ +..+..       -...|..+.|.+-.      ..|++...+|.++-
T Consensus        46 WRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   46 WRKLAWSPD-CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             heEEEECCC-CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            356899999 8999999999999999987533 333322       13567777775422      24666777888877


Q ss_pred             EECCC--CCcccccccc---cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           85 FDVHM--PASWRPLESY---NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        85 wd~~~--~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      |-+..  .+..+....+   ..+...|.++.++|..++|++|+....      +++.    -+ +....+++-....+.+
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~-a~~~GLtaWRiL~~~P  192 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SK-ASSCGLTAWRILSDSP  192 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----cc-ccccCceEEEEcCCCC
Confidence            76532  2233332222   234678999999999888888764322      0000    00 1122333333333333


Q ss_pred             cEE-EEeecCCe------EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194          160 WEV-ISGGLDSK------LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  232 (375)
Q Consensus       160 ~~l-~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i  232 (375)
                      ++. ++...|+.      ..+|.+-+.+... ....            ....|..|.++|      ||.+||+...+|.|
T Consensus       193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~------------~~d~i~kmSlSP------dg~~La~ih~sG~l  253 (282)
T PF15492_consen  193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQ------------EQDGIFKMSLSP------DGSLLACIHFSGSL  253 (282)
T ss_pred             cEEEccccCccccccccccceeeccceeeee-cccc------------CCCceEEEEECC------CCCEEEEEEcCCeE
Confidence            222 22222221      1233322211111 1111            357899999999      89999999999999


Q ss_pred             EEEeCCCcceeeccc
Q 017194          233 DVINIESELNISRSK  247 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~  247 (375)
                      .+|++.+-+......
T Consensus       254 sLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  254 SLWEIPSLRLQRSWK  268 (282)
T ss_pred             EEEecCcchhhcccc
Confidence            999999866555443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.05  E-value=2e-07  Score=85.25  Aligned_cols=241  Identities=9%  Similarity=0.099  Sum_probs=140.3

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      ++.|.++.|..+ .+.++.+..+|.|.+-|.++... .....-...|.+++|+||++.++..+..+++.+-+..    ..
T Consensus        68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~----f~  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD----FE  141 (1265)
T ss_pred             CcceEEEEEecc-cceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc----cc
Confidence            368999999998 67788888889999998877653 2233346789999999999999999988887665432    12


Q ss_pred             cccccc-----CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEee--
Q 017194           95 PLESYN-----YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGG--  166 (375)
Q Consensus        95 ~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--  166 (375)
                      ++....     ...+....+-|-.....+ -|+ .|.....+.... +......  ..+.=+.+.|-.||+ ++++..  
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~--~~~~~~~IsWRgDg~-~fAVs~~~  216 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIE--QDDHKTSISWRGDGE-YFAVSFVE  216 (1265)
T ss_pred             chhccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchh--hccCCceEEEccCCc-EEEEEEEe
Confidence            222110     001222233332221111 111 111111111100 1111111  112225689999998 566632  


Q ss_pred             --cC-CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe---cCCcEEEEeCCCc
Q 017194          167 --LD-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESE  240 (375)
Q Consensus       167 --~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~  240 (375)
                        .+ ..|++||.+ |..-..-. .            ....-.+++|-|      .|.++++-.   .|+.|.+|.-...
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se-~------------~~~l~~~LsWkP------sgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSE-P------------VEGLQHSLSWKP------SGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccC-c------------ccccccceeecC------CCCeEeeeeecCCCCcEEEEecCCc
Confidence              23 789999976 43322111 1            123457889988      688888764   4557888876642


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE---ecCCCeE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS---GGNDKLV  317 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s---~~~dg~i  317 (375)
                      +.                                     ............++..++|+   .++..||.   ......|
T Consensus       277 ~h-------------------------------------g~f~l~~p~de~~ve~L~Wn---s~sdiLAv~~~~~e~~~v  316 (1265)
T KOG1920|consen  277 RH-------------------------------------GEFVLPFPLDEKEVEELAWN---SNSDILAVVTSNLENSLV  316 (1265)
T ss_pred             cc-------------------------------------cccccCCcccccchheeeec---CCCCceeeeecccccceE
Confidence            11                                     11111222333448899999   88888887   5555669


Q ss_pred             EEEeCCCce
Q 017194          318 KVWDCSRFQ  326 (375)
Q Consensus       318 ~iwd~~~~~  326 (375)
                      ++|-..+..
T Consensus       317 ~lwt~~Nyh  325 (1265)
T KOG1920|consen  317 QLWTTGNYH  325 (1265)
T ss_pred             EEEEecCeE
Confidence            999988864

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.04  E-value=1.5e-06  Score=69.11  Aligned_cols=210  Identities=12%  Similarity=0.112  Sum_probs=130.0

Q ss_pred             EEEEEEeCCC-CeEEEEcCCC-eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-----CCCcEEEEeCc
Q 017194           61 VTSLCFKSGN-EDIIYVSSGK-EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-----DGGDVKIIDIR  133 (375)
Q Consensus        61 v~~l~~~~~~-~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~  133 (375)
                      ...++.+|.. ..++.+-.-| ...+||..+++....+..-.+ ..---.-.|++||++|++.-     ..|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            3467788844 4455555544 678999998876655543221 11112368999999999874     34789999998


Q ss_pred             -CceeeeeEecCcccceeEEEEeeCCCcEEEEeec------------------CCeEEEeeCCCCCcceEEecCCCCCCC
Q 017194          134 -QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL------------------DSKLVMWDFSKGRPNKIVNFGLPENNG  194 (375)
Q Consensus       134 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~  194 (375)
                       +-+.+..+. .|.-..-.+.+.|+++ .|+++..                  +..+...|..+|+.+.+..+..     
T Consensus        86 ~~~~ri~E~~-s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-----  158 (305)
T PF07433_consen   86 RGYRRIGEFP-SHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-----  158 (305)
T ss_pred             CCcEEEeEec-CCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-----
Confidence             567788888 7766677888999997 3554321                  2345666777777777765431     


Q ss_pred             CCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc-------EEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          195 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-------VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                          -.+...+..+++.+      +|..++..-..|.       |-+++..........                     
T Consensus       159 ----~~~~lSiRHLa~~~------~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~---------------------  207 (305)
T PF07433_consen  159 ----DLHQLSIRHLAVDG------DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPA---------------------  207 (305)
T ss_pred             ----cccccceeeEEecC------CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccC---------------------
Confidence                11456788999987      5655555433321       111111110000000                     


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeCCCce
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ  326 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~~~~~  326 (375)
                                    .......-...+-+|+++   +++.++++.+ .-|.+.+||..++.
T Consensus       208 --------------p~~~~~~l~~Y~gSIa~~---~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  208 --------------PEEQWRRLNGYIGSIAAD---RDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             --------------ChHHHHhhCCceEEEEEe---CCCCEEEEECCCCCEEEEEECCCCC
Confidence                          000112335789999999   8888776554 57889999999984

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=7.2e-08  Score=77.41  Aligned_cols=161  Identities=16%  Similarity=0.080  Sum_probs=104.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEV   82 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i   82 (375)
                      +.+....+.+|...|..++|+|.+..++..++.+.+|+|.|+++......+..+ ..+++++|.-+.. +|.+|-..|.|
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV  260 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence            344555677888999999999995558889999999999999999988888877 8999999987654 56666678999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcC------CCCeEEEEeCCCcEEEEeCcC--ceeeeeEecCcccceeEEEE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNP------KSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~  154 (375)
                      .+||++..+.......-.....+|..++.-+      .+.+++....+  +..|++.-  +.....+..+..+.+.++++
T Consensus       261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy  338 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY  338 (463)
T ss_pred             EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence            9999986543221111111133454444333      23344444332  55666542  22222222134567777888


Q ss_pred             eeCCCcEEEEeec
Q 017194          155 IPWKPWEVISGGL  167 (375)
Q Consensus       155 ~~~~~~~l~~~~~  167 (375)
                      ++..+.++++.-.
T Consensus       339 ~~~snh~l~tyRs  351 (463)
T KOG1645|consen  339 HGVSNHLLLTYRS  351 (463)
T ss_pred             cCccceEEEEecC
Confidence            7766645555433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.02  E-value=1.1e-06  Score=75.75  Aligned_cols=193  Identities=9%  Similarity=0.050  Sum_probs=116.9

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCc----------cEE-EEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----------PVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----------~v~-~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      +..++.++.+|.+.-+|.++|+.+...+....          .+. .+..  .+..++.++.++.+..+|.++++..-..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            45677778889999999999998766543220          000 0111  3456777888999999999988754443


Q ss_pred             ccccCCCcceeE-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce-----eEEEEeeCCCcEEEEeecCCe
Q 017194           97 ESYNYNKEEINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----SSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        97 ~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      ..    ...+.+ ...  .+..++++..++.+..+|.++++.+-.+. ......     .+.... ++  .++.++.+|.
T Consensus       147 ~~----~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP~v~-~~--~v~~~~~~g~  216 (394)
T PRK11138        147 KV----AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGESAPATA-FG--GAIVGGDNGR  216 (394)
T ss_pred             cC----CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCCCCCEEE-CC--EEEEEcCCCE
Confidence            32    112211 111  24467778889999999999999887775 221100     111111 22  4677788999


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      +..+|..+++.+.......+......      .....+..+|..    .+..+++++.+|.+..+|..+++.
T Consensus       217 v~a~d~~~G~~~W~~~~~~~~~~~~~------~~~~~~~~sP~v----~~~~vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        217 VSAVLMEQGQLIWQQRISQPTGATEI------DRLVDVDTTPVV----VGGVVYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             EEEEEccCChhhheeccccCCCccch------hcccccCCCcEE----ECCEEEEEEcCCeEEEEECCCCCE
Confidence            99999999998877654321100000      001111122210    255677777889999999998643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.01  E-value=1.3e-08  Score=89.87  Aligned_cols=186  Identities=16%  Similarity=0.164  Sum_probs=132.5

Q ss_pred             CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce
Q 017194           70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC  149 (375)
Q Consensus        70 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  149 (375)
                      +..++.|+-...+..+|+++.+..+.... .  ...|.-++  .+++++.+|...|+|.+-|.++.+.+.++. .|++.+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~--a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~si  220 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-S--ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSI  220 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeec-c--CCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-ccccce
Confidence            34566666667788888886544332222 1  23355444  367899999999999999999999999999 999999


Q ss_pred             eEEEEeeCCCcEEEEeec---------CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          150 SSVQFIPWKPWEVISGGL---------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      .++...  |+ +|++++.         |.-|++||++..+.+..+.+.              ....-+.|.|.     -.
T Consensus       221 SDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--------------~~P~flrf~Ps-----l~  278 (1118)
T KOG1275|consen  221 SDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--------------YGPQFLRFHPS-----LT  278 (1118)
T ss_pred             eeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc--------------cCchhhhhccc-----cc
Confidence            877654  55 7888875         556899999988777666543              23355677774     46


Q ss_pred             CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee
Q 017194          221 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  300 (375)
Q Consensus       221 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  300 (375)
                      ..+++.+..|...+-|..+-..+         +                           .-+..+......+..+.+| 
T Consensus       279 t~~~V~S~sGq~q~vd~~~lsNP---------~---------------------------~~~~~v~p~~s~i~~fDiS-  321 (1118)
T KOG1275|consen  279 TRLAVTSQSGQFQFVDTATLSNP---------P---------------------------AGVKMVNPNGSGISAFDIS-  321 (1118)
T ss_pred             ceEEEEecccceeeccccccCCC---------c---------------------------cceeEEccCCCcceeEEec-
Confidence            78889999999999995432100         0                           0011122224458899999 


Q ss_pred             cCCCCcEEEEecCCCeEEEEeC
Q 017194          301 FGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       301 ~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                        +++..||.|..+|.|.+|--
T Consensus       322 --sn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  322 --SNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             --CCCceEEEecccCcEeeecC
Confidence              99999999999999999983

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=2.8e-09  Score=83.54  Aligned_cols=149  Identities=13%  Similarity=0.190  Sum_probs=110.9

Q ss_pred             EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-----eeeeeEecCcccc
Q 017194           74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSI  148 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~  148 (375)
                      ++.+.+..+-+-|++++-. +.+.    ..+.|.++.|...++++..|+.+|.|..+|++.+     .+...+.  |.+.
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~----sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ----SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc----cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcc
Confidence            4556677888889887643 2222    2678999999998999999999999999999854     4566666  8999


Q ss_pred             eeEEEEee-CCCcEEEEeecCCeEEEeeCCCCCc---ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194          149 CSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       149 v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      |+++.... +++ .|++.+.+|+|++||++.-++   +..++                +.|+..+..|... .+....++
T Consensus       301 vtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYe----------------GHvN~~a~l~~~v-~~eeg~I~  362 (425)
T KOG2695|consen  301 VTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYE----------------GHVNLSAYLPAHV-KEEEGSIF  362 (425)
T ss_pred             hhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeee----------------ccccccccccccc-ccccceEE
Confidence            99998877 555 788999999999999998776   55555                2334333333222 22567777


Q ss_pred             EEecCCcEEEEeCCCcceeeccc
Q 017194          225 VAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       225 ~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      +++.|...+||.++.+......+
T Consensus       363 s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             EccCeeEEEEEecccCceeeccC
Confidence            89999999999999876555444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.00  E-value=1.8e-07  Score=74.72  Aligned_cols=189  Identities=13%  Similarity=0.090  Sum_probs=118.1

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc-ccccCCCcce
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL-ESYNYNKEEI  106 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v  106 (375)
                      +..+++++.++.|..||..+|+.+..... ...+..... ..+..++.++.++.++.+|..+++..... ..........
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            45677778899999999999998877765 222222122 23445666777889999999988765542 2110001111


Q ss_pred             eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce----------eEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194          107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC----------SSVQFIPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      .......++..++++..++.|..+|+++|+.+.... ......          ..-....++  .++.++.++.+..+|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~  190 (238)
T PF13360_consen  114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDL  190 (238)
T ss_dssp             --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEET
T ss_pred             cccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEEC
Confidence            122222237788888889999999999999988877 433221          122222233  4666666775444499


Q ss_pred             CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      .+++.+.....               .....+ ...      ++..|++++.++.|..||+++++..
T Consensus       191 ~tg~~~w~~~~---------------~~~~~~-~~~------~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  191 ATGEKLWSKPI---------------SGIYSL-PSV------DGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTTEEEEEECS---------------S-ECEC-EEC------CCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCCEEEEecC---------------CCccCC-cee------eCCEEEEEeCCCEEEEEECCCCCEE
Confidence            99986643321               122221 122      5788888889999999999997543

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.98  E-value=2.5e-08  Score=88.08  Aligned_cols=184  Identities=15%  Similarity=0.182  Sum_probs=138.9

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN  107 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  107 (375)
                      +..++-|+-...+..+|+.+.+..+........|.-++.  +++++.+|...|+|.+-|.++   .+.+.++..|.+.|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHSGSIS  221 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc---Cceeeeeecccccee
Confidence            456777777778999999988887777665556666655  478899999999999999885   577788888999998


Q ss_pred             EEEEcCCCCeEEEEeC---------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          108 QIVCNPKSSFLACADD---------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       108 ~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      ++..  .|+.|++++.         |..|+|||++..+.+..+. -+-++ .-+.|+|.-...+++++..|...+-|..+
T Consensus       222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence            7655  6778888763         5568999999887777666 34333 66788998766899999999999999432


Q ss_pred             C-Cc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          179 G-RP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       179 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      - .+ ....... |          ....+..+.+++      +++.++.|..+|.|.+|.-
T Consensus       298 lsNP~~~~~~v~-p----------~~s~i~~fDiSs------n~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  298 LSNPPAGVKMVN-P----------NGSGISAFDISS------NGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cCCCccceeEEc-c----------CCCcceeEEecC------CCceEEEecccCcEeeecC
Confidence            1 22 1111111 0          234589999998      8999999999999999983

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.97  E-value=3e-09  Score=57.74  Aligned_cols=39  Identities=10%  Similarity=0.118  Sum_probs=36.6

Q ss_pred             CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        48 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ++++.++.+|...|++|+|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=5.5e-10  Score=98.06  Aligned_cols=220  Identities=14%  Similarity=0.125  Sum_probs=158.0

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC--eEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKS   84 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~--~i~i   84 (375)
                      ..++|+.|+..-+|++|+-+ .+.|+.|+..|.|+++++.+|........|..+|+.+.=+.+|..+++.+.-.  -..+
T Consensus      1093 ~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            45678889999999999998 78999999999999999999999999999999999999999999887766543  4679


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec---CcccceeEEEEeeCCCcE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~  161 (375)
                      |++..  .......+    ..-.++.|+...+.-+.|.......+||+.++..+.++-.   +.+..=+...|+|+.. +
T Consensus      1172 W~~~s--~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-L 1244 (1516)
T KOG1832|consen 1172 WDASS--TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-L 1244 (1516)
T ss_pred             hcccc--ccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-e
Confidence            99874  23444444    3456788887665556666667799999999887766321   1222336788999987 4


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      ++   .||  .+||++..+.++.+.--              ..--.=.|+|      +|..++.-+     .|||+++.+
T Consensus      1245 Il---ndG--vLWDvR~~~aIh~FD~f--------------t~~~~G~FHP------~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQF--------------TDYGGGGFHP------SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             Ee---eCc--eeeeeccHHHHhhhhhh--------------eecccccccC------CCceEEeec-----hhhhhHHHH
Confidence            43   345  48999988777776511              1112234677      688887754     479999865


Q ss_pred             eeecccccCCCCCCceeeccccccee
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                      .....+.   -....+.|+..|..+.
T Consensus      1295 lLh~VP~---Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1295 LLHSVPS---LDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred             HHhcCcc---ccceEEEeccCccchh
Confidence            5443332   2334566777776654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=1e-07  Score=83.24  Aligned_cols=188  Identities=13%  Similarity=0.118  Sum_probs=131.0

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      .+.++|++++   ++.|+-|..+|.|++.+.+. .. .+...|...      ..+|.++++|+.||++.|-.+.+++...
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            4678888886   57999999999999999763 33 333334433      6689999999999999999988765433


Q ss_pred             ccccccCCCcceeEEEEcCC-----CCeEEEEeCCCcEEEEeCcC--ceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           95 PLESYNYNKEEINQIVCNPK-----SSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .. .+   ..++.+++++|+     .+.+++|+..| +.++.-+-  .+.-..+. .-.++|.++.|..+   ++|=++.
T Consensus       108 ~~-df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~g~---lIAWand  178 (846)
T KOG2066|consen  108 QY-DF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWRGN---LIAWAND  178 (846)
T ss_pred             eE-ec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEecCc---EEEEecC
Confidence            22 23   578999999997     56799998888 77765331  11111344 56789999999754   6666666


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      +| |++||+.+++.+..++.+.+.       .........+.|.+       ...|+.|=.| +|++..++
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~-------~R~e~fpphl~W~~-------~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQS-------VRPELFPPHLHWQD-------EDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCC-------CCcccCCCceEecC-------CCeEEEecCC-eEEEEEEe
Confidence            65 899999998888877654211       11123345677765       5566665444 78888887

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=2.2e-07  Score=81.25  Aligned_cols=154  Identities=15%  Similarity=0.160  Sum_probs=111.0

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      ...+++++++  +++++.|+-+|.+++.+....    . .....|...      ..+|.++++|+.||.|.|-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            4566777776  578999999999999997632    1 221122222      56899999999999999999988888


Q ss_pred             eeeEecCcccceeEEEEeeC----CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          138 YKSLRAGHSSICSSVQFIPW----KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                      ..++.  ...++.+++++|+    ....+++|+..| +.++.-+-..........           ...++|.++.|   
T Consensus       106 ~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-----------~~eG~I~~i~W---  168 (846)
T KOG2066|consen  106 ITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-----------EGEGPIHSIKW---  168 (846)
T ss_pred             ceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-----------cCccceEEEEe---
Confidence            77776  6679999999998    112699999988 777764322111111111           03589999999   


Q ss_pred             ccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                           .|.++|-++.+| |++||+.+.+......
T Consensus       169 -----~g~lIAWand~G-v~vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  169 -----RGNLIAWANDDG-VKVYDTPTRQRLTNIP  196 (846)
T ss_pred             -----cCcEEEEecCCC-cEEEeccccceeeccC
Confidence                 589999998886 8999999876554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=2.9e-06  Score=75.11  Aligned_cols=198  Identities=11%  Similarity=0.109  Sum_probs=128.4

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCcc-EEEEEEeCCCCeEEEEcCCC-----eEEEEECCCC
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMP   90 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~d~-----~i~iwd~~~~   90 (375)
                      .|.|  |++. +..+|.|+.+|.|.+.+- +-+.+..++++... |..+-...+..+|++.+.|+     .+++|+++.-
T Consensus        27 ~isc--~~s~-~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISC--CSSS-TGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeE--EcCC-CceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            4554  5565 778999999999888873 34445777777777 55555555557888877764     5899998753


Q ss_pred             Cc---cccc---c--c--ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc--Cce-eeeeEecCcccceeEEEEeeC
Q 017194           91 AS---WRPL---E--S--YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR--QHC-LYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        91 ~~---~~~~---~--~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~-~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      ..   ...+   .  .  .+....++.+++.+.+-+.+|+|-.+|.|..+.-+  ..+ ....+...-..+|+++++..+
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence            21   1112   1  1  11235678899999999999999999999988532  111 111222134579999999999


Q ss_pred             CCcEEEEeecCCeEEEeeCCCCCcceE-EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194          158 KPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       158 ~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                      +...+++++ -..|.+|.+....+... +. .            +...+++..+++.      ...+++++.+ .+.+|+
T Consensus       183 ~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld-~------------~G~~lnCss~~~~------t~qfIca~~e-~l~fY~  241 (933)
T KOG2114|consen  183 GKSVLFVAT-TEQVMLYSLSGRTPSLKVLD-N------------NGISLNCSSFSDG------TYQFICAGSE-FLYFYD  241 (933)
T ss_pred             CceeEEEEe-cceeEEEEecCCCcceeeec-c------------CCccceeeecCCC------CccEEEecCc-eEEEEc
Confidence            884334433 35799999884332222 32 2            3567888888872      3335555443 699999


Q ss_pred             CCC
Q 017194          237 IES  239 (375)
Q Consensus       237 ~~~  239 (375)
                      ...
T Consensus       242 sd~  244 (933)
T KOG2114|consen  242 SDG  244 (933)
T ss_pred             CCC
Confidence            874

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.83  E-value=2e-05  Score=61.89  Aligned_cols=214  Identities=13%  Similarity=0.103  Sum_probs=124.3

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      +.+.+-...+..++|.|+++.++++....+.|..++. +|+.++.+... .+..-.|++..++.++++--.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            3555666679999999986778888888999988886 47877777654 356788999888877777667899999998


Q ss_pred             CCCCcc---cccc-----cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC---ceeeeeEe-------cCcccce
Q 017194           88 HMPASW---RPLE-----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSLR-------AGHSSIC  149 (375)
Q Consensus        88 ~~~~~~---~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~-------~~~~~~v  149 (375)
                      ......   ..+.     ....++..+-.++|.+.++.|+++-+..-..++.+..   ...+....       ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            432211   1111     1113456789999999888888877776677776653   11111110       0233467


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      .+++++|....+++....+..|..+| .+|+.+..+.+....    .+....-...-.|++.+      +|++.+++ +-
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----~gl~~~~~QpEGIa~d~------~G~LYIvs-Ep  241 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----HGLSKDIPQPEGIAFDP------DGNLYIVS-EP  241 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----GG-SS---SEEEEEE-T------T--EEEEE-TT
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----cCcccccCCccEEEECC------CCCEEEEc-CC
Confidence            89999998876788888899999999 668887777755100    00000113567899988      67655554 55


Q ss_pred             CcEEEE
Q 017194          230 GVVDVI  235 (375)
Q Consensus       230 g~i~i~  235 (375)
                      +..++|
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.78  E-value=5.8e-05  Score=62.29  Aligned_cols=298  Identities=10%  Similarity=0.056  Sum_probs=131.8

Q ss_pred             ecccCceeeEeeecCc-----cEEEEEEeCCCCeEEEEcC-C--CeEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194           44 DLRSKDVQLVTDVGNG-----PVTSLCFKSGNEDIIYVSS-G--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS  115 (375)
Q Consensus        44 ~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  115 (375)
                      |..+|..+..+.....     ..+.=+|.++|+.|+.++. +  ..+.+.|+.+++..+... ..  ........++|++
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~--g~~~~g~~~s~~~   92 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GP--GDNTFGGFLSPDD   92 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTS
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CC--CCCccceEEecCC
Confidence            5566766666654332     2223356788977766554 4  478888998765433322 21  1223356677888


Q ss_pred             CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec-----------------------CCeEE
Q 017194          116 SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-----------------------DSKLV  172 (375)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------d~~i~  172 (375)
                      +.++-......|+-.|+++.+....+. .....+-...|..+.....+.+..                       ...|.
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~  171 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERVVYE-VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIF  171 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred             CeEEEEECCCeEEEEECCcCcEEEEEE-CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence            887666566789999999887655555 455555556665332212333321                       23566


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---CC-cEEEEeCCC--cceeecc
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DG-VVDVINIES--ELNISRS  246 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---dg-~i~i~d~~~--~~~~~~~  246 (375)
                      --|+.+|+....+..              ..++..+.|+|.     +..+|+-+-+   +. .-+||-+++  .......
T Consensus       172 ~idl~tG~~~~v~~~--------------~~wlgH~~fsP~-----dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~  232 (386)
T PF14583_consen  172 TIDLKTGERKVVFED--------------TDWLGHVQFSPT-----DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH  232 (386)
T ss_dssp             EEETTT--EEEEEEE--------------SS-EEEEEEETT-----EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred             EEECCCCceeEEEec--------------CccccCcccCCC-----CCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence            667777776655552              478899999995     5555555442   11 125555443  2222221


Q ss_pred             cccCCCCCCceeecccccceeeeeeeec-----------CCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194          247 KSTTKPLKGSQSTSKVNIRDAEMEILDQ-----------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK  315 (375)
Q Consensus       247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg  315 (375)
                      .........-=-|.|||..+.+......           ..... +.+...    .+....-.+   +||++++-=+.|.
T Consensus       233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~~~~----p~~~H~~ss---~Dg~L~vGDG~d~  304 (386)
T PF14583_consen  233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRLMEM----PWCSHFMSS---PDGKLFVGDGGDA  304 (386)
T ss_dssp             ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEEEEE-----SEEEEEE----TTSSEEEEEE---
T ss_pred             cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEEEeC----CceeeeEEc---CCCCEEEecCCCC
Confidence            1222222233358999998887432111           11111 111111    122334445   8888877533331


Q ss_pred             ----------------eEEEEeCCCceeeeecchhhhhhhhccccc-ceeeeeecCCCCCcEEE-eeCCCeEEEEe
Q 017194          316 ----------------LVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVV-CDTSKVVKVYS  373 (375)
Q Consensus       316 ----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s-~~~dg~v~iw~  373 (375)
                                      -|++++++.+................++.. .=....|+| |+++++- +...|...||=
T Consensus       305 p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  305 PVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             ----------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEE
T ss_pred             CccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEE
Confidence                            566778877643211111000111111111 124568999 8877655 45667666653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.75  E-value=4.6e-05  Score=64.52  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             ecCCCCEEEEe---------CCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           24 SRDRPGFVASS---------GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        24 ~~~~~~~l~s~---------~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      ||| +++++..         +..+.+.|+|+++++....... ...+....|+|+|+.++... ++.|.+++..++...+
T Consensus         1 S~d-~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPD-GKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TT-SSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCC-CCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            466 5665553         2245799999998765444333 67788999999999998876 6899999987653322


Q ss_pred             cccccc-----CC---------CcceeEEEEcCCCCeEEEEeCC-Cc---------------------------------
Q 017194           95 PLESYN-----YN---------KEEINQIVCNPKSSFLACADDG-GD---------------------------------  126 (375)
Q Consensus        95 ~~~~~~-----~~---------~~~v~~~~~~~~~~~l~~~~~d-g~---------------------------------  126 (375)
                      ....-.     +-         -+.-..+-|+||+++|+....| ..                                 
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~  157 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR  157 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence            211100     00         1123568899999998865321 11                                 


Q ss_pred             --EEEEeCcCceeeeeE-e---cCcccceeEEEEeeCCCcEEEEe--ecC---CeEEEeeCCCCCcceEE
Q 017194          127 --VKIIDIRQHCLYKSL-R---AGHSSICSSVQFIPWKPWEVISG--GLD---SKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       127 --i~iwd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~l~~~--~~d---~~i~~wd~~~~~~~~~~  185 (375)
                        +.++|+.+++....- .   ..-...+..+.|.+++.. |+..  ..+   ..+.++|..+++.....
T Consensus       158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~-l~~~~~nR~q~~~~l~~~d~~tg~~~~~~  226 (353)
T PF00930_consen  158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR-LWVQWLNRDQNRLDLVLCDASTGETRVVL  226 (353)
T ss_dssp             EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE-EEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred             eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE-EEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence              333444444332110 0   023446788899999872 3332  322   24667788776654444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=3.8e-06  Score=74.43  Aligned_cols=195  Identities=13%  Similarity=0.178  Sum_probs=124.6

Q ss_pred             EEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcc-eeEEEEcCCCCeEEEEeCCC-----cEEEEeCcCc---
Q 017194           65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE-INQIVCNPKSSFLACADDGG-----DVKIIDIRQH---  135 (375)
Q Consensus        65 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~---  135 (375)
                      +|++.+..++.|+.+|.|.+.+-.    .+.+..+..+... |..+-...+..+|++.++|+     .+++|+++..   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            467888899999999999888854    3444555555555 44444444446777776654     4899998732   


Q ss_pred             ---eeee--eEe---c-CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC--CC-cceEEecCCCCCCCCCCcccCCC
Q 017194          136 ---CLYK--SLR---A-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GR-PNKIVNFGLPENNGNAGQCYNPA  203 (375)
Q Consensus       136 ---~~~~--~~~---~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~  203 (375)
                         .++.  .+.   . ....++.+++.+.+-. .+|+|-.+|.|.++.-+-  .+ ....+...            ...
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~------------~~~  172 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHR------------GKE  172 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeecc------------CCC
Confidence               2221  111   0 1345788999998877 799999999999985321  11 11111111            357


Q ss_pred             ceeEEeecCCccccCCCCE-EEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194          204 FVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  282 (375)
Q Consensus       204 ~v~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~  282 (375)
                      +|+.+++..      +++. +.+++. ..|.+|.+...                                      . ..
T Consensus       173 pITgL~~~~------d~~s~lFv~Tt-~~V~~y~l~gr--------------------------------------~-p~  206 (933)
T KOG2114|consen  173 PITGLALRS------DGKSVLFVATT-EQVMLYSLSGR--------------------------------------T-PS  206 (933)
T ss_pred             CceeeEEec------CCceeEEEEec-ceeEEEEecCC--------------------------------------C-cc
Confidence            899999987      5665 344433 47899988842                                      1 22


Q ss_pred             eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      ...+..|...++|..++   +....+++++. ..+.+|+.....
T Consensus       207 ~~~ld~~G~~lnCss~~---~~t~qfIca~~-e~l~fY~sd~~~  246 (933)
T KOG2114|consen  207 LKVLDNNGISLNCSSFS---DGTYQFICAGS-EFLYFYDSDGRG  246 (933)
T ss_pred             eeeeccCCccceeeecC---CCCccEEEecC-ceEEEEcCCCcc
Confidence            33567778889999998   33332444443 469999988763

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.72  E-value=1.4e-05  Score=69.91  Aligned_cols=240  Identities=14%  Similarity=0.023  Sum_probs=135.6

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeeec-------------CccEE-------EEEE--------e-----CCCCeEEEEc
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDVG-------------NGPVT-------SLCF--------K-----SGNEDIIYVS   77 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~~-------------~~~v~-------~l~~--------~-----~~~~~l~~~~   77 (375)
                      +.||+..|.++|+-+.+++.++.+..-             +..|.       .+.|        |     .||++|+.-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            789999999999999988876665321             01111       0111        1     1566666544


Q ss_pred             C-CCeEEEEECCCCCccccccccc---CC---------Cccee-----EEEEcCCCCeEEEEe-CCCcEEEEeCcCceee
Q 017194           78 S-GKEVKSFDVHMPASWRPLESYN---YN---------KEEIN-----QIVCNPKSSFLACAD-DGGDVKIIDIRQHCLY  138 (375)
Q Consensus        78 ~-d~~i~iwd~~~~~~~~~~~~~~---~~---------~~~v~-----~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~  138 (375)
                      . ...|-..+++.-+..+.+..-.   .|         +..|.     .+-+.|||+.+...+ ..+.+.+.|.++.+..
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~  228 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA  228 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence            3 3345455554332222221110   11         11111     122344555443222 3456778888877776


Q ss_pred             eeEecCcccceeEEEEeeCCCcEEEEee---------------------------------------cCCeEEEeeCCC-
Q 017194          139 KSLRAGHSSICSSVQFIPWKPWEVISGG---------------------------------------LDSKLVMWDFSK-  178 (375)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------------------------------------~d~~i~~wd~~~-  178 (375)
                      .++.  -......++++|+|++.++++.                                       .++.|.+.|.++ 
T Consensus       229 ~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~  306 (635)
T PRK02888        229 WQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKA  306 (635)
T ss_pred             EEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCcc
Confidence            6665  2335567788888885444431                                       123466666655 


Q ss_pred             ----CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCcceeecccccCCCC
Q 017194          179 ----GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPL  253 (375)
Q Consensus       179 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~  253 (375)
                          .+.+..+..              +...+.++++|      ||+++++++. ++.+.++|+.+.+....-...    
T Consensus       307 ~~~~~~v~~yIPV--------------GKsPHGV~vSP------DGkylyVanklS~tVSVIDv~k~k~~~~~~~~----  362 (635)
T PRK02888        307 ANAGSALTRYVPV--------------PKNPHGVNTSP------DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK----  362 (635)
T ss_pred             ccCCcceEEEEEC--------------CCCccceEECC------CCCEEEEeCCCCCcEEEEEChhhhhhhhccCC----
Confidence                233444443              36778899999      8998887764 889999999875432211100    


Q ss_pred             CCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                              ..-....+..- ...-...+|.   ++|....|-.-|..|..||+..
T Consensus       363 ------------------------~~~~vvaevev-GlGPLHTaFD---g~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 ------------------------PRDAVVAEPEL-GLGPLHTAFD---GRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ------------------------ccceEEEeecc-CCCcceEEEC---CCCCEEEeEeecceeEEEehHH
Confidence                                    00011122222 2233456788   8888888888899999999987

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.71  E-value=9.7e-06  Score=69.17  Aligned_cols=116  Identities=12%  Similarity=0.088  Sum_probs=81.5

Q ss_pred             cEEEEEEeC-CCCeEEEE----cCCC----eEEEEECCCCCccccccc-ccCCCcceeEEEEcCCCCeEEEEeCCCcEEE
Q 017194           60 PVTSLCFKS-GNEDIIYV----SSGK----EVKSFDVHMPASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKI  129 (375)
Q Consensus        60 ~v~~l~~~~-~~~~l~~~----~~d~----~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  129 (375)
                      ...++.|+. +...+.+.    +.+|    .-++|++..++ .+.+.. .-..+..+.+++++|+...++.|+.||.|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            345677775 33444443    2334    34667766433 222221 1134678999999999999999999999999


Q ss_pred             EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194          130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR  180 (375)
Q Consensus       130 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  180 (375)
                      ||...+...  +. ...-.++.++|+|+|. ++++|+..|.+.+||+.-..
T Consensus       286 yD~~~~~t~--~~-ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  286 YDTTRGVTL--LA-KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEcCCCeee--ee-eecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence            998766333  22 2456678999999998 89999999999999987543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=2.8e-08  Score=87.74  Aligned_cols=196  Identities=15%  Similarity=0.173  Sum_probs=133.1

Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC-eEE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-KLV  172 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~  172 (375)
                      +....+..|....+|++|+.+.+.|++|+..|.|+++++.+|....... .|.+.|+-+.-+.+|..+|.+++... -..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHH
Confidence            4455566678899999999999999999999999999999999998898 99999999999999984344444333 467


Q ss_pred             EeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc--
Q 017194          173 MWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST--  249 (375)
Q Consensus       173 ~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--  249 (375)
                      +|++.+ +.+.+.+.                 .-.++.|+.      ....-+.|+......+||+.++.........  
T Consensus      1171 LW~~~s~~~~~Hsf~-----------------ed~~vkFsn------~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD-----------------EDKAVKFSN------SLQFRALGTEADDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred             HhccccccCcccccc-----------------ccceeehhh------hHHHHHhcccccceEEEecccCcHHHHhcCcch
Confidence            999864 33444433                 346777876      3445566666678999999997665543222  


Q ss_pred             -CCCCCCceeecccccceeeeee-eecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          250 -TKPLKGSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       250 -~~~~~~~~~~s~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                       .+.......|+|+...+.-.|. |+....   +.++.+......+. =.|+   |.|..++.-++     |||+++.
T Consensus      1228 ~~~y~~n~a~FsP~D~LIlndGvLWDvR~~---~aIh~FD~ft~~~~-G~FH---P~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILNDGVLWDVRIP---EAIHRFDQFTDYGG-GGFH---PSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred             hhhhhccccccCCCcceEeeCceeeeeccH---HHHhhhhhheeccc-cccc---CCCceEEeech-----hhhhHHH
Confidence             2233456678888887764332 222222   22333332222222 2355   88887777654     8999887

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=6.2e-07  Score=79.15  Aligned_cols=159  Identities=12%  Similarity=0.099  Sum_probs=104.1

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE   97 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   97 (375)
                      +++++|+|. .-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.+.+|....-...+...
T Consensus        62 atSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~  140 (1416)
T KOG3617|consen   62 ATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN  140 (1416)
T ss_pred             hhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence            567999998 6788899889999999998887766677899999999999999999999999999999887322222222


Q ss_pred             ccc--C-CCcceeEEEEcCCCC------eEEEEeCCCcEE-EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           98 SYN--Y-NKEEINQIVCNPKSS------FLACADDGGDVK-IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        98 ~~~--~-~~~~v~~~~~~~~~~------~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .+.  . ..-...+...++++.      ..++.+++..+- .++.+....-+...  |.       =.|+|. .|+.++.
T Consensus       141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--ks-------gv~~g~-~F~~~~~  210 (1416)
T KOG3617|consen  141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--KS-------GVPKGT-EFLFAGK  210 (1416)
T ss_pred             hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--cc-------CCCCCc-EEEEEcC
Confidence            111  0 011234555566532      133444444443 44433221112221  21       135666 6888889


Q ss_pred             CCeEEEeeCCCCCcceEEecC
Q 017194          168 DSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +|+|+-.|- .++.....+.+
T Consensus       211 ~GtVyyvdq-~g~~~~V~k~d  230 (1416)
T KOG3617|consen  211 SGTVYYVDQ-NGRQRTVHKLD  230 (1416)
T ss_pred             CceEEEEcC-CCcEEEEEEcc
Confidence            999988883 46666666644

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.68  E-value=7.6e-06  Score=71.53  Aligned_cols=184  Identities=13%  Similarity=0.052  Sum_probs=118.4

Q ss_pred             EecCCCCEEE-EeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC----eEEEEECCCCCcccccc
Q 017194           23 ASRDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK----EVKSFDVHMPASWRPLE   97 (375)
Q Consensus        23 ~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~   97 (375)
                      +.|| |+.+. +.-..+.+.+.|.++.+...++.... ....+.++|+|+++++.+.+.    ++..-+..+..   .+.
T Consensus       200 lpnD-Gk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~v  274 (635)
T PRK02888        200 LPND-GKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVV  274 (635)
T ss_pred             cCCC-CCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCc---eEE
Confidence            3445 44443 22334677788888877766666533 446788999999988886432    33333322110   000


Q ss_pred             cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      .+.  ...+  -++.++|++...+  ++.|.+.|..+     .+.+..+.  -......+.++|||+++++++..+.+|.
T Consensus       275 vfn--i~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        275 VFN--IARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             EEc--hHHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEE
Confidence            000  0001  1334577776653  57899999988     45555565  4567789999999998778888899999


Q ss_pred             EeeCCCCCc------------ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          173 MWDFSKGRP------------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       173 ~wd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      +.|+.+.+.            ..+++.+              ......+|.+      +|....+-.-|..|..||+..
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevevG--------------lGPLHTaFDg------~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPELG--------------LGPLHTAFDG------RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeeccC--------------CCcceEEECC------CCCEEEeEeecceeEEEehHH
Confidence            999987653            2333322              2334567776      788888888999999999986

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.67  E-value=2.1e-08  Score=85.29  Aligned_cols=208  Identities=16%  Similarity=0.231  Sum_probs=131.8

Q ss_pred             CCceeEEEEecCCC-CEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCC-CCeEEEEcC----CCeEEEEE
Q 017194           15 KATATCCIASRDRP-GFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSG-NEDIIYVSS----GKEVKSFD   86 (375)
Q Consensus        15 ~~~i~~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~-~~~l~~~~~----d~~i~iwd   86 (375)
                      ...+.|++++.+.. ..++.|..+|.|.+-......-  ......+..+.++++|++- .+.||+|-.    |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34577888766533 5788899999999988764332  3345567889999999874 455665532    45899999


Q ss_pred             CCCCCc-cccccccc-CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEEEEeeCCCcEEE
Q 017194           87 VHMPAS-WRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        87 ~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +.+.-. ...-..+. +......+++|..+.+++.+|.....+.++|++.... ...+   .+..+..+...|-...+++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCcee
Confidence            986411 00000111 1234566889998889999999988999999984322 2222   2446777888884443454


Q ss_pred             EeecCCeEEEee-CCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          164 SGGLDSKLVMWD-FSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       164 ~~~~d~~i~~wd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      + ..||.|.+|| .++-+ ++..+... +      .  -.+..+..++|+|.    ..|.+.+..-..++|++||+..
T Consensus       213 s-~~dg~iAiwD~~rnienpl~~i~~~-~------N--~~~~~l~~~aycPt----rtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  213 S-NSDGDIAIWDTYRNIENPLQIILRN-E------N--KKPKQLFALAYCPT----RTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             c-cccCceeeccchhhhccHHHHHhhC-C------C--CcccceeeEEeccC----CcchhhhhccCcceEEEecccc
Confidence            4 4599999999 43322 22222211 0      0  02346889999995    2344444444568999999874

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.64  E-value=2.4e-08  Score=84.86  Aligned_cols=203  Identities=17%  Similarity=0.278  Sum_probs=132.7

Q ss_pred             cceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEEEeeCCCcEEEEee----cCCeEEEeeC
Q 017194          104 EEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWKPWEVISGG----LDSKLVMWDF  176 (375)
Q Consensus       104 ~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~~wd~  176 (375)
                      ..+.|+++..+  ...+++|..+|.|.+-.++...-- ..+..++..++++++|++-+...||.|-    .|..+.+||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            34556665543  346888999999999888754322 2333378889999999997654666663    3567999999


Q ss_pred             CCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCC
Q 017194          177 SKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK  254 (375)
Q Consensus       177 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  254 (375)
                      .++  .+.....+..       .   ......+++|..      +.+++.+|.....++++|++...             
T Consensus       137 ~s~ltvPke~~~fs~-------~---~l~gqns~cwlr------d~klvlaGm~sr~~~ifdlRqs~-------------  187 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSS-------S---TLDGQNSVCWLR------DTKLVLAGMTSRSVHIFDLRQSL-------------  187 (783)
T ss_pred             ccccCCCcccccccc-------c---cccCcccccccc------Ccchhhcccccchhhhhhhhhhh-------------
Confidence            876  3333222220       0   123345677765      78999999999999999998310             


Q ss_pred             CceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe-CCCceeeeecch
Q 017194          255 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD-CSRFQGVQTSIN  333 (375)
Q Consensus       255 ~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~  333 (375)
                                                  .....-.+..+..+.++|+  .+.|+++-. ||.|.+|| ..+.+       
T Consensus       188 ----------------------------~~~~svnTk~vqG~tVdp~--~~nY~cs~~-dg~iAiwD~~rnie-------  229 (783)
T KOG1008|consen  188 ----------------------------DSVSSVNTKYVQGITVDPF--SPNYFCSNS-DGDIAIWDTYRNIE-------  229 (783)
T ss_pred             ----------------------------hhhhhhhhhhcccceecCC--CCCceeccc-cCceeeccchhhhc-------
Confidence                                        0011111345677778843  556887766 89999999 44432       


Q ss_pred             hhhhhhhcccc----cceeeeeecCCCCCcEEEeeCC-CeEEEEec
Q 017194          334 NDLLIKNINLN----KKVNWLCTTPTESENLVVCDTS-KVVKVYSI  374 (375)
Q Consensus       334 ~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d-g~v~iw~~  374 (375)
                       .++......+    ..+..++|.|.....+++...| ++|+++++
T Consensus       230 -npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  230 -NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             -cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence             3333333322    3589999999666678887755 78888876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.62  E-value=2.9e-05  Score=71.74  Aligned_cols=243  Identities=12%  Similarity=0.112  Sum_probs=139.3

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      ...|.++.|..+.+.++.+...|.|.+-|.++.. ...+...   ...|.+++|+||++.++..+..+++.+.+ .+..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~  142 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMT-KDFEP  142 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccc
Confidence            3689999999999999999999999999887643 2333333   67899999999999999998877776654 23333


Q ss_pred             eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      +..-. -      ...-.+.+  .++.++....=.-+.-..|+....-.... + .. .....-...-++|.|--     
T Consensus       143 i~E~~-L------~~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~-e-k~-~~~~~~~~~~~~IsWRg-----  205 (1265)
T KOG1920|consen  143 IAEKP-L------DADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEK-E-KA-LEQIEQDDHKTSISWRG-----  205 (1265)
T ss_pred             hhccc-c------cccccccc--ccceecccccceeeecchhhhcccccccc-c-cc-ccchhhccCCceEEEcc-----
Confidence            22211 1      11111222  13333332211112211111110000000 0 00 00000012335678876     


Q ss_pred             CCCCEEEEEe-----cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCcc
Q 017194          218 KTNKICVVAK-----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA  292 (375)
Q Consensus       218 ~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
                       ||.++++..     ....|++||... ....                                        .-......
T Consensus       206 -Dg~~fAVs~~~~~~~~RkirV~drEg-~Lns----------------------------------------~se~~~~l  243 (1265)
T KOG1920|consen  206 -DGEYFAVSFVESETGTRKIRVYDREG-ALNS----------------------------------------TSEPVEGL  243 (1265)
T ss_pred             -CCcEEEEEEEeccCCceeEEEecccc-hhhc----------------------------------------ccCccccc
Confidence             899999843     337899999882 1110                                        00011222


Q ss_pred             EEEEEEeecCCCCcEEEEec---CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE---eeCC
Q 017194          293 ASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV---CDTS  366 (375)
Q Consensus       293 v~~~~~s~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d  366 (375)
                      -.+++|-   |.|..+++-.   .|+.|.+|.-+.-..      ++...........+..++|+. ++..|+.   ....
T Consensus       244 ~~~LsWk---Psgs~iA~iq~~~sd~~IvffErNGL~h------g~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~  313 (1265)
T KOG1920|consen  244 QHSLSWK---PSGSLIAAIQCKTSDSDIVFFERNGLRH------GEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLEN  313 (1265)
T ss_pred             ccceeec---CCCCeEeeeeecCCCCcEEEEecCCccc------cccccCCcccccchheeeecC-CCCceeeeeccccc
Confidence            3567888   8888888753   456798998655321      123223333444599999999 8888888   4555


Q ss_pred             CeEEEEec
Q 017194          367 KVVKVYSI  374 (375)
Q Consensus       367 g~v~iw~~  374 (375)
                      ..|++|-+
T Consensus       314 ~~v~lwt~  321 (1265)
T KOG1920|consen  314 SLVQLWTT  321 (1265)
T ss_pred             ceEEEEEe
Confidence            66999975

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.58  E-value=7.8e-05  Score=66.01  Aligned_cols=206  Identities=12%  Similarity=0.075  Sum_probs=119.2

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCc------cEE--EEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG------PVT--SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN  100 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~------~v~--~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  100 (375)
                      ..++.++.++.|.-.|..+|+.+...+....      .+.  .+... ++..++.++.++.|+-+|.++++..-......
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            4566677789999999999998766653322      010  01111 22577888889999999999887654433211


Q ss_pred             C--CCccee-EEEEcCCCCeEEEEe---------CCCcEEEEeCcCceeeeeEecCccc-------------------ce
Q 017194          101 Y--NKEEIN-QIVCNPKSSFLACAD---------DGGDVKIIDIRQHCLYKSLRAGHSS-------------------IC  149 (375)
Q Consensus       101 ~--~~~~v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~v  149 (375)
                      .  ....+. ...+.  +..++.++         .++.+..+|..+++.+-.+......                   .+
T Consensus       141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            0  000011 11111  23555554         3678999999999988776511110                   01


Q ss_pred             -eEEEEeeCCCcEEEEeecCC------------------eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          150 -SSVQFIPWKPWEVISGGLDS------------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       150 -~~~~~~~~~~~~l~~~~~d~------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                       ...++.+.+. +++.++.++                  .|.-+|..+++....++...++....  ....+..+..+. 
T Consensus       219 w~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~--~~~s~p~~~~~~-  294 (488)
T cd00216         219 WASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY--DGPNQPSLADIK-  294 (488)
T ss_pred             cCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc--ccCCCCeEEecc-
Confidence             1234444445 577776554                  79999999999998876442110000  000000111111 


Q ss_pred             cCCccccCCCC---EEEEEecCCcEEEEeCCCcceeeccc
Q 017194          211 PDADMLDKTNK---ICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       211 ~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                       ..     ++.   .+++++.+|.+..+|.++++......
T Consensus       295 -~~-----~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         295 -PK-----DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             -cc-----CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence             00     233   67888899999999999998776543

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.58  E-value=3.6e-05  Score=66.18  Aligned_cols=148  Identities=10%  Similarity=0.083  Sum_probs=84.5

Q ss_pred             EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194           53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI  132 (375)
Q Consensus        53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (375)
                      .+.........+.++|+|++++.++ +|.-.++.....   +. ..    .+.-..++|.+.+ .+|+-..++.|.++.-
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~---r~-k~----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW---RN-KA----FGSGLSFVWSSRN-RYAVLESSSTIKIYKN   96 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT---EE-EE----EEE-SEEEE-TSS-EEEEE-TTS-EEEEET
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC---cc-cc----cCceeEEEEecCc-cEEEEECCCeEEEEEc
Confidence            3334456688999999999888844 788888883321   11 11    3456778899855 5677767888999643


Q ss_pred             cCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194          133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       133 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      -+.+....+.  ....+..|-.   |. +|...+. +.|.+||+.+++.+.++...               .|..+.|++
T Consensus        97 ~~~~~~k~i~--~~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~  154 (443)
T PF04053_consen   97 FKNEVVKSIK--LPFSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRIDVS---------------AVKYVIWSD  154 (443)
T ss_dssp             TEE-TT-------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEESS----------------E-EEEEE-T
T ss_pred             CccccceEEc--CCcccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEecC---------------CCcEEEEEC
Confidence            2333333444  2223444433   65 5555554 48999999999999999743               489999998


Q ss_pred             CccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          213 ADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       213 ~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                            ++.+++..+.+ .+.+++...
T Consensus       155 ------~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  155 ------DGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             ------TSSEEEEE-S--SEEEEEE-H
T ss_pred             ------CCCEEEEEeCC-eEEEEEecc
Confidence                  78999888766 778877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.56  E-value=5.1e-05  Score=66.10  Aligned_cols=152  Identities=9%  Similarity=0.119  Sum_probs=101.9

Q ss_pred             EEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc---
Q 017194           22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE---   97 (375)
Q Consensus        22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---   97 (375)
                      ++... +++++.|+.-|.+.+|+-..++....-. +....+..+..+++..++|+|+..|.|.++-+..........   
T Consensus        40 c~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   40 CVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            44444 7899999999999999987776543332 234556667788888888888889999999887632221111   


Q ss_pred             cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc----eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194           98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                      .-..|...|++++|++++..+++|...|.|..-.+...    ...+.+. ...+.|-.+.+...   +|+.++.- ...+
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q~---~LLVStl~-r~~L  193 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQS---YLLVSTLT-RCIL  193 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeecccc---eehHhhhh-hhhe
Confidence            12236789999999999999999999999998888762    1122222 34566777766543   34433332 2345


Q ss_pred             eeCCCC
Q 017194          174 WDFSKG  179 (375)
Q Consensus       174 wd~~~~  179 (375)
                      ++++.+
T Consensus       194 c~tE~e  199 (726)
T KOG3621|consen  194 CQTEAE  199 (726)
T ss_pred             eecchh
Confidence            555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.56  E-value=0.0001  Score=63.47  Aligned_cols=149  Identities=13%  Similarity=0.111  Sum_probs=83.0

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      +.+....-....+.++|+ +++++.++ ||...|+.........     .+.-....|.++++ +|+-...++|.++.--
T Consensus        26 k~lg~~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF   97 (443)
T ss_dssp             EEEEE-SS--SEEEE-TT-SSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred             ccCCCCCcCCeeEEECCC-CCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence            344445556788999998 88888754 6788888743333221     23445678988554 6666668889996322


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      +....+.+..    ...+..+-.   |.+|+..+.+ .|.+||+.+++.++.+.  .. +|..+.|++++. +++..+.+
T Consensus        98 ~~~~~k~i~~----~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~-~val~t~~  165 (443)
T PF04053_consen   98 KNEVVKSIKL----PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID--VS-AVKYVIWSDDGE-LVALVTKD  165 (443)
T ss_dssp             EE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSS-EEEEE-S-
T ss_pred             ccccceEEcC----CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe--cC-CCcEEEEECCCC-EEEEEeCC
Confidence            2211112221    123444433   7777777654 89999999999999987  33 489999999998 56666644


Q ss_pred             CeEEEeeCCC
Q 017194          169 SKLVMWDFSK  178 (375)
Q Consensus       169 ~~i~~wd~~~  178 (375)
                       .+.+++.+.
T Consensus       166 -~i~il~~~~  174 (443)
T PF04053_consen  166 -SIYILKYNL  174 (443)
T ss_dssp             -SEEEEEE-H
T ss_pred             -eEEEEEecc
Confidence             677776553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=3.3e-06  Score=74.82  Aligned_cols=109  Identities=12%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             EEEEEeCCCCeEEEEcC----CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           62 TSLCFKSGNEDIIYVSS----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        62 ~~l~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      +-..|+|...++++++.    .|.|.||-- +|+....+ .+   +-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~V-t~---P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDV-TY---PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccc-cc---ceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            34578998888887764    478888853 33321211 22   23467899999988899999999999999876655


Q ss_pred             eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194          138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS  177 (375)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~  177 (375)
                      -.... .|..++..+.|+++|. .++++..-|.|.+|...
T Consensus        94 htv~~-th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVE-THPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeecc-CCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            44444 8999999999999999 89999999999999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=0.00042  Score=59.55  Aligned_cols=144  Identities=12%  Similarity=0.170  Sum_probs=91.9

Q ss_pred             ceeEEEEeeCCCcEEEEee----cCCe----EEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          148 ICSSVQFIPWKPWEVISGG----LDSK----LVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~----~d~~----i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      ...++.|+-..++.+.+..    .+|.    -.+|+...++.  +......            .+..+.+.+++|     
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip------------L~s~v~~ca~sp-----  269 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP------------LPSQVICCARSP-----  269 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe------------cCCcceEEecCc-----
Confidence            4466777765555555532    2343    34566654432  2222222            457899999999     


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194          218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  297 (375)
Q Consensus       218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (375)
                       +...++.|+.||.|.+||...+..                                          ......-....++
T Consensus       270 -~E~kLvlGC~DgSiiLyD~~~~~t------------------------------------------~~~ka~~~P~~ia  306 (545)
T PF11768_consen  270 -SEDKLVLGCEDGSIILYDTTRGVT------------------------------------------LLAKAEFIPTLIA  306 (545)
T ss_pred             -ccceEEEEecCCeEEEEEcCCCee------------------------------------------eeeeecccceEEE
Confidence             799999999999999999986311                                          1112234568899


Q ss_pred             EeecCCCCcEEEEecCCCeEEEEeCCCceeee----ecc-hhh--hhhhhcccccceeeeeecC
Q 017194          298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----TSI-NND--LLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~-~~~--~~~~~~~~~~~v~~~~~~~  354 (375)
                      |+   |+|.++++|+..|.+.+||+.-.....    +.. +..  .+.....+...+..+.|.+
T Consensus       307 WH---p~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~  367 (545)
T PF11768_consen  307 WH---PDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAP  367 (545)
T ss_pred             Ec---CCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEecc
Confidence            99   999999999999999999987653211    000 001  1122334566677778874

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.52  E-value=0.00017  Score=55.37  Aligned_cols=67  Identities=9%  Similarity=-0.053  Sum_probs=50.4

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      +++++.|...|.+.+.+.++|+....+..-..-=......+++..+..++.|++.+..|.++.....
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence            4578889999999999999998877766432211223446788899999999999999998754433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.49  E-value=0.00038  Score=56.52  Aligned_cols=183  Identities=11%  Similarity=0.105  Sum_probs=109.5

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC----------CCeEEEEECCCCCcccccccccCC----C
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNYN----K  103 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~----~  103 (375)
                      +.+.++|.++++.+..+..  +-.-.+..+|+++.+++++.          .-.|.+||..+-.....+.....|    .
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4799999999888777764  23334667999998887542          237999999874333322221110    1


Q ss_pred             cceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCC
Q 017194          104 EEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGR  180 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~  180 (375)
                      .....++++.|++++++..  -.-.|.|.|+..++.+..+. . . .+.  ...|.++.-|.+-+.||.+.-..+. .|+
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~-P-GC~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-T-P-GCW--LIYPSGNRGFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-G-T-SEE--EEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-C-C-CEE--EEEecCCCceEEEecCCceEEEEECCCCC
Confidence            2234578889999988764  34579999999999988887 2 1 222  2234443358888899999999988 455


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      ...... ..-  ...     .......-++..      .+..++--+.+|.|+-.|+....
T Consensus       170 ~~~~~t-~~F--~~~-----~dp~f~~~~~~~------~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  170 EAQKST-KVF--DPD-----DDPLFEHPAYSR------DGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             EEEEEE-EES--STT-----TS-B-S--EEET------TTTEEEEEBTTSEEEEEEETTSS
T ss_pred             EeEeec-ccc--CCC-----CcccccccceEC------CCCeEEEEecCCEEEEEeccCCc
Confidence            542221 000  000     001111112222      35556657888999988888653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.47  E-value=1.8e-05  Score=67.71  Aligned_cols=171  Identities=16%  Similarity=0.133  Sum_probs=104.4

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEe---CCC-CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-CC-
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASS---GED-GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GK-   80 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~---~~d-~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~-   80 (375)
                      ..+.+..-...+..-.|+|+ +..++..   ... ..+.++++++++....+. -...-..-+|+|||+.|+.+.. |+ 
T Consensus       184 ~~~~l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         184 NQQKLTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             ceeEecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCC
Confidence            33444444456777789998 5554433   222 459999999888755554 2334456789999998876654 45 


Q ss_pred             -eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEEee
Q 017194           81 -EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        81 -~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  156 (375)
                       .|++.|+.+... ..+...   .+.-..-.|+|||++|+..+. .|  .|.+++.+.+.. ..+. .....-..-.|+|
T Consensus       262 ~~iy~~dl~~~~~-~~Lt~~---~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~~~~~~~p~~Sp  335 (425)
T COG0823         262 PDIYLMDLDGKNL-PRLTNG---FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FSGGGNSNPVWSP  335 (425)
T ss_pred             ccEEEEcCCCCcc-eecccC---CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee-ccCCCCcCccCCC
Confidence             577778876542 223333   233336789999999887654 33  477777765554 3333 2222223778999


Q ss_pred             CCCcEEEEeecCCe--EEEeeCCCCCcceEE
Q 017194          157 WKPWEVISGGLDSK--LVMWDFSKGRPNKIV  185 (375)
Q Consensus       157 ~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~  185 (375)
                      +|+++++....+|.  |.+.|+.++.....+
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence            99954444433454  667777666543333

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.45  E-value=0.00013  Score=61.93  Aligned_cols=151  Identities=15%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC---C---
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---P---   90 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~---~---   90 (375)
                      .|+++.|.++ ..-|+.|...|.|.||.+...+...  .....+-....+.+-      ...++.-.+-|+..   .   
T Consensus         3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~   73 (395)
T PF08596_consen    3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLK   73 (395)
T ss_dssp             -EEEEEEETT-TTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-S
T ss_pred             eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCcccc
Confidence            5889999998 6778889999999999987654322  000111111111110      00111222333322   1   


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-------CcccceeEEEEee---CC-C
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-------GHSSICSSVQFIP---WK-P  159 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~---~~-~  159 (375)
                      +...+..-+....++|++++.+.-| ++++|..+|.+.|.|++....+..-..       .....++++.|.-   .+ .
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             cccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            1123333344447899999998555 999999999999999987776654220       1234677888862   11 1


Q ss_pred             ---cEEEEeecCCeEEEeeCC
Q 017194          160 ---WEVISGGLDSKLVMWDFS  177 (375)
Q Consensus       160 ---~~l~~~~~d~~i~~wd~~  177 (375)
                         -.+++|+..|.+.+|.+.
T Consensus       153 ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEe
Confidence               268899999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.44  E-value=4.5e-05  Score=69.36  Aligned_cols=143  Identities=15%  Similarity=0.205  Sum_probs=99.4

Q ss_pred             CEEEEe-CCCCcEEEEecccCceeeEeeecCcc-EEEEEEeC-----CCCeEEEEcCCCeEEEEECCCCCccccc----c
Q 017194           29 GFVASS-GEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASWRPL----E   97 (375)
Q Consensus        29 ~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~-v~~l~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~   97 (375)
                      ++|+.- .....|.-.|++.|+.+..+..|... |..++=..     .....+.|-.++.+..||.+-... +.+    .
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k  572 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK  572 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc
Confidence            344433 34578999999999999999887644 55443221     123456677789999999985431 111    1


Q ss_pred             cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194           98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS  177 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~  177 (375)
                      .+ .......|++-+.+| +||+|+.+|.||+||--..+....|. +...+|.+|..+.||+|+|+||  +..+.+++..
T Consensus       573 ~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  573 QY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             cc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            22 224567788887777 89999999999999954334444566 7789999999999999766655  4678888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.42  E-value=9.3e-06  Score=70.49  Aligned_cols=123  Identities=14%  Similarity=0.188  Sum_probs=89.5

Q ss_pred             CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc
Q 017194          103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN  182 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  182 (375)
                      ...|.--+++..+++++.|+.-|.+++|+-..++....-..+-.+.+..+..+++.. ++|.|+..|.|.++-++...+.
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCC
Confidence            445555667778899999999999999997666543322213344555666777765 7899999999999998875443


Q ss_pred             eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ...... +.      ...|+..|++++|++      ++..+++|...|+|..-.+.+
T Consensus       112 ~~~~~t-~~------d~~~~~rVTal~Ws~------~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVT-PC------DKSHKCRVTALEWSK------NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeec-cc------cccCCceEEEEEecc------cccEEeecCCCceEEEEEech
Confidence            333222 11      111678999999999      899999999999999988876

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.40  E-value=0.00023  Score=60.42  Aligned_cols=159  Identities=14%  Similarity=0.048  Sum_probs=87.7

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----  134 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----  134 (375)
                      .|+.+.|.++..-|+++...|.|.+|.....+...  ...   ..+-....+.+-      ...++.-.+-|+..     
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~---~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~   71 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NRE---QPPDLDYNFRRF------SLNNSPGKLTDISDRAPPS   71 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--------GGGSS-SEEE-GGG--TT
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccC---CCcccCcccccc------cccCCCcceEEehhhCCcc
Confidence            58899999998889999999999999887533221  000   011111111110      01111222333332     


Q ss_pred             ---c-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          135 ---H-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       135 ---~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                         + .+...+. ...++|++++.+.-|  +++.|+.+|.+.+.|+|....+..-....     ..........++++.|
T Consensus        72 ~~~gf~P~~l~~-~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~-----~~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   72 LKEGFLPLTLLD-AKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE-----SFLSKSSSSYVTSIEF  143 (395)
T ss_dssp             -SEEEEEEEEE----S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-------T-SS----EEEEEE
T ss_pred             cccccCchhhee-ccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc-----cccccccccCeeEEEE
Confidence               1 2333444 557899999999777  89999999999999999877776644331     0011112356778888


Q ss_pred             cCCccccCC---CCEEEEEecCCcEEEEeCC
Q 017194          211 PDADMLDKT---NKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       211 ~~~~~~~~~---~~~l~~~~~dg~i~i~d~~  238 (375)
                      .-... ..|   .-.+++|+..|.+.+|.+.
T Consensus       144 ~vm~~-~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  144 SVMTL-GGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEE--TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             EEEec-CCCcccceEEEEEeCCCCEEEEEEe
Confidence            74221 222   3578999999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.00097  Score=57.06  Aligned_cols=231  Identities=11%  Similarity=0.053  Sum_probs=144.8

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~   95 (375)
                      ....+...|++.+..++-.....+...+................-..++.++.+..+... ..++.|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            344567777732333333222245555544222122122111334567888888755444 4458999999776554444


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeC---CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      ...    ......++++|+++.+.++..   ++.+.+.|..+.+.+.... .-..+ ..+++.|++...+++-..++.|.
T Consensus       112 ~~v----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         112 IPV----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             eee----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence            433    236678999999988777765   6889999998888887765 22234 89999999985556666889999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCCcceeec-ccc
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISR-SKS  248 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~-~~~  248 (375)
                      +.|........ -...        ...........+.+.|      ++..+.+....   +.+...|..+...... ...
T Consensus       186 vi~~~~~~v~~-~~~~--------~~~~~~~~P~~i~v~~------~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~  250 (381)
T COG3391         186 VIDTSGNSVVR-GSVG--------SLVGVGTGPAGIAVDP------DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV  250 (381)
T ss_pred             EEeCCCcceec-cccc--------cccccCCCCceEEECC------CCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence            99976554442 1100        0000123446778888      78877766554   5899999988766554 333


Q ss_pred             cCCCCCCceeecccccceeee
Q 017194          249 TTKPLKGSQSTSKVNIRDAEM  269 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~  269 (375)
                      ... ....+.+.|+|+.+...
T Consensus       251 ~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         251 GSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             ccC-CCCceeECCCCCEEEEE
Confidence            333 66778899999988764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.39  E-value=0.00049  Score=56.25  Aligned_cols=221  Identities=12%  Similarity=0.105  Sum_probs=121.2

Q ss_pred             CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE------
Q 017194           68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL------  141 (375)
Q Consensus        68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------  141 (375)
                      ..++.|+.|+.+| +.+++.........+..    ...|..+...|+-+.+++-+ |+.++++++..-.....-      
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3567899998888 89999843322222222    33499999999877777764 499999998754332210      


Q ss_pred             -------ecCcccceeEEE--EeeCCCcEEEEeecCCeEEEeeCCCC-----CcceEEecCCCCCCCCCCcccCCCceeE
Q 017194          142 -------RAGHSSICSSVQ--FIPWKPWEVISGGLDSKLVMWDFSKG-----RPNKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       142 -------~~~~~~~v~~~~--~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                             .......+...+  -...+. ..+......+|.+|.....     +..+++..              +..+.+
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~  143 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--------------PDPPSS  143 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEEc--------------CCCcEE
Confidence                   001223344444  112333 3444445558888887653     34455553              478899


Q ss_pred             EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC----------CCCCceeecccccceee---eeeeec
Q 017194          208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----------PLKGSQSTSKVNIRDAE---MEILDQ  274 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~s~~g~~~~~---~~~~~~  274 (375)
                      ++|.        ++.+++|..+ ...+.|+.++...........          .....+..-+++.++..   .+..-.
T Consensus       144 i~~~--------~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~  214 (275)
T PF00780_consen  144 IAFL--------GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVN  214 (275)
T ss_pred             EEEe--------CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEc
Confidence            9996        5677777654 578889886544332211110          11111222233444443   222222


Q ss_pred             CCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          275 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      ..+...+ ...+.- .....++++.     ..||++.+. +.|.||++.+++
T Consensus       215 ~~G~~~r-~~~i~W-~~~p~~~~~~-----~pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  215 KNGEPSR-KSTIQW-SSAPQSVAYS-----SPYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             CCCCcCc-ccEEEc-CCchhEEEEE-----CCEEEEECC-CEEEEEECcCCc
Confidence            2222111 111111 2244555554     247777776 459999999984

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.33  E-value=0.00077  Score=52.89  Aligned_cols=197  Identities=9%  Similarity=0.006  Sum_probs=118.0

Q ss_pred             ceeEEEEcCCCCeEEEEeCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc
Q 017194          105 EINQIVCNPKSSFLACADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN  182 (375)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  182 (375)
                      --..+.|..++.++-+.+.-|  .|+.+|+.+++......-...-.-..++...+.  ++...-.++...+||..+.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~--l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK--LYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE--EEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE--EEEEEecCCeEEEEccccceEE
Confidence            345677877787777777655  699999999988766552233344566666442  5666678899999999999999


Q ss_pred             eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194          183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~  262 (375)
                      .++.+.              ..-..++.        +++.|+.......|+++|..+.+......-           ..+
T Consensus       124 ~~~~y~--------------~EGWGLt~--------dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V-----------~~~  170 (264)
T PF05096_consen  124 GTFPYP--------------GEGWGLTS--------DGKRLIMSDGSSRLYFLDPETFKEVRTIQV-----------TDN  170 (264)
T ss_dssp             EEEE-S--------------SS--EEEE--------CSSCEEEE-SSSEEEEE-TTT-SEEEEEE------------EET
T ss_pred             EEEecC--------------CcceEEEc--------CCCEEEEECCccceEEECCcccceEEEEEE-----------EEC
Confidence            888755              34456664        688888888888999999887543321110           000


Q ss_pred             ccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc-
Q 017194          263 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-  341 (375)
Q Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-  341 (375)
                                    ...          -..++.+.+-    +|...|=.=....|..-|..+++......-..+..... 
T Consensus       171 --------------g~p----------v~~LNELE~i----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~  222 (264)
T PF05096_consen  171 --------------GRP----------VSNLNELEYI----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGR  222 (264)
T ss_dssp             --------------TEE-------------EEEEEEE----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTS
T ss_pred             --------------CEE----------CCCcEeEEEE----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccc
Confidence                          001          1234555554    56555555555667777777776554333223332211 


Q ss_pred             -----ccccceeeeeecCCCCCcEEEee
Q 017194          342 -----NLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       342 -----~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                           ......+.+|+.|..+++++||=
T Consensus       223 ~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  223 DKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             cccccccCCeeEeEeEeCCCCEEEEEeC
Confidence                 12456899999996677777764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.32  E-value=0.00013  Score=62.58  Aligned_cols=201  Identities=15%  Similarity=0.125  Sum_probs=118.8

Q ss_pred             cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---C-CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---G-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      .+.+-|.+ +...+.+......+..-+|+|++..++....   . ..+.++++.+++....+. +   .+.-...+|+||
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~---~g~~~~P~fspD  248 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-F---NGNNGAPAFSPD  248 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-c---CCccCCccCCCC
Confidence            34444443 4445555555667778899999988766532   2 469999999876544443 3   344456789999


Q ss_pred             CCeEEEEe-CCCc--EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe--EEEeeCCCCCcceEEecCC
Q 017194          115 SSFLACAD-DGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGL  189 (375)
Q Consensus       115 ~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~  189 (375)
                      |+.|+... .||.  |+++|+..+.. ..+. .-.+.-..-.|+|+|++++++.+..|.  |.++|++.+.. ..+... 
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~-  324 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS-  324 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCcc-eecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc-
Confidence            98876554 5554  67778776663 3354 233333467899999977777766665  55556554443 444322 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCc--EEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                                  ...-..-.++|      +|++++..+. +|.  |.+.|+.++.....+  ..........+.++|+.+
T Consensus       325 ------------~~~~~~p~~Sp------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i  384 (425)
T COG0823         325 ------------GGGNSNPVWSP------DGDKIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMI  384 (425)
T ss_pred             ------------CCCCcCccCCC------CCCEEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceE
Confidence                        11112556666      8998887764 344  666666554421111  111223344566677665


Q ss_pred             ee
Q 017194          267 AE  268 (375)
Q Consensus       267 ~~  268 (375)
                      ..
T Consensus       385 ~~  386 (425)
T COG0823         385 MF  386 (425)
T ss_pred             EE
Confidence            43

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.30  E-value=0.00058  Score=57.17  Aligned_cols=191  Identities=14%  Similarity=0.216  Sum_probs=106.4

Q ss_pred             CCeEEEEeC----------CCcEEEEeCcCc----eeeeeE-ecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC
Q 017194          115 SSFLACADD----------GGDVKIIDIRQH----CLYKSL-RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG  179 (375)
Q Consensus       115 ~~~l~~~~~----------dg~i~iwd~~~~----~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  179 (375)
                      ..+|++|..          .|.|.++++...    ..+..+ .....++|++++-.  +. .++.+. .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc
Confidence            456777652          288999999873    122211 11357789988876  33 344433 479999999987


Q ss_pred             C-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194          180 R-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS  258 (375)
Q Consensus       180 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  258 (375)
                      + ....-...            .+..+.++...        ++++++|+....+.++.....                  
T Consensus       118 ~~l~~~~~~~------------~~~~i~sl~~~--------~~~I~vgD~~~sv~~~~~~~~------------------  159 (321)
T PF03178_consen  118 KTLLKKAFYD------------SPFYITSLSVF--------KNYILVGDAMKSVSLLRYDEE------------------  159 (321)
T ss_dssp             SSEEEEEEE-------------BSSSEEEEEEE--------TTEEEEEESSSSEEEEEEETT------------------
T ss_pred             ccchhhheec------------ceEEEEEEecc--------ccEEEEEEcccCEEEEEEEcc------------------
Confidence            7 44433332            23466666664        669999998888888755431                  


Q ss_pred             ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhh-hh
Q 017194          259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND-LL  337 (375)
Q Consensus       259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~  337 (375)
                                        ...+..+.. ......+.++.+-   ++++.++.+..+|.+.++...........  .. .+
T Consensus       160 ------------------~~~l~~va~-d~~~~~v~~~~~l---~d~~~~i~~D~~gnl~~l~~~~~~~~~~~--~~~~L  215 (321)
T PF03178_consen  160 ------------------NNKLILVAR-DYQPRWVTAAEFL---VDEDTIIVGDKDGNLFVLRYNPEIPNSRD--GDPKL  215 (321)
T ss_dssp             ------------------TE-EEEEEE-ESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-SS-SSTTT--TTTBE
T ss_pred             ------------------CCEEEEEEe-cCCCccEEEEEEe---cCCcEEEEEcCCCeEEEEEECCCCccccc--ccccc
Confidence                              111222222 1224567888887   67679999999999999988742110000  01 11


Q ss_pred             h--hhcccccceeee---eecCC--CCC-----cEEEeeCCCeEEE
Q 017194          338 I--KNINLNKKVNWL---CTTPT--ESE-----NLVVCDTSKVVKV  371 (375)
Q Consensus       338 ~--~~~~~~~~v~~~---~~~~~--~~~-----~l~s~~~dg~v~i  371 (375)
                      .  ........|+++   ++.|.  +.+     .++-++.+|.|.+
T Consensus       216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            1  112234566666   44441  222     3777888998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.29  E-value=0.0015  Score=56.41  Aligned_cols=196  Identities=10%  Similarity=0.065  Sum_probs=101.9

Q ss_pred             cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC---cccccccccCCCcceeEEEEcCCC
Q 017194           39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA---SWRPLESYNYNKEEINQIVCNPKS  115 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~  115 (375)
                      .|.||+.. |+.+..+.-..+.|.++.|+.+. .|+....||.++++|+....   ....+....-....+....+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            48888854 66777766556899999998865 56677789999999986322   011111111111222222333355


Q ss_pred             CeEEEEeCCCcEEEEeCcCce-eeeeEec--Ccc------cceeE-EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194          116 SFLACADDGGDVKIIDIRQHC-LYKSLRA--GHS------SICSS-VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~~------~~v~~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  185 (375)
                        ++.-..++.+.+.+--... ..+.+..  ...      ..... ..++.+.. ..+....++.+.+.+-...+.   +
T Consensus       140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---c
Confidence              3333344445444322211 1111110  000      00111 22333333 334444445555444222111   1


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~  262 (375)
                      .              ...++..+++||      +++++|.-..+|.+.+.+..-.+...............+.|.-+
T Consensus       214 ~--------------~~~~i~~iavSp------ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  214 D--------------SDGPIIKIAVSP------NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             c--------------CCCCeEEEEECC------CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            1              136799999999      89999999999999998766544444443333344445555444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.00087  Score=57.34  Aligned_cols=199  Identities=13%  Similarity=0.160  Sum_probs=138.5

Q ss_pred             eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---CCeEEEEECCCCCcccc
Q 017194           19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRP   95 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~   95 (375)
                      ..++.++.+.+..+....+..|.+.|..+.........-. ....++++|+++.+..+..   ++++.+.|..+.+....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            3567788844566666667899999988777766665433 6678999999988777665   57888888887655444


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeee-----eEecCcccceeEEEEeeCCCcEEEEeecC-
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYK-----SLRAGHSSICSSVQFIPWKPWEVISGGLD-  168 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-  168 (375)
                      ...  + ..+ ..+++.|+++.++... .++.|.+.|.......+     .+.  -......+.+.|++.+..++...+ 
T Consensus       156 ~~v--G-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~--~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         156 IPV--G-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG--VGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             Eec--C-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc--cCCCCceEEECCCCCEEEEEeccCC
Confidence            222  1 233 8899999999776665 78899999977655543     122  233457789999998545554444 


Q ss_pred             -CeEEEeeCCCCCcceE-EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCccee
Q 017194          169 -SKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNI  243 (375)
Q Consensus       169 -~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~  243 (375)
                       +.+...|..++..... ...+            .. ....+.+.|      +++.+.+... .+.+.+.|..+....
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~------------~~-~~~~v~~~p------~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVG------------SG-APRGVAVDP------AGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             CceEEEEeCCCceEEEeccccc------------cC-CCCceeECC------CCCEEEEEecCCCeEEEEeCCCCcee
Confidence             6899999888776654 2222            11 456678888      7888888854 488999998875443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.27  E-value=0.0014  Score=54.84  Aligned_cols=177  Identities=19%  Similarity=0.238  Sum_probs=107.2

Q ss_pred             CcEEEEecccCceeeEeeec-CccEEEEEE---eCC----CCeEEEEcC---------C-CeEEEEECCCC----Ccccc
Q 017194           38 GCICWFDLRSKDVQLVTDVG-NGPVTSLCF---KSG----NEDIIYVSS---------G-KEVKSFDVHMP----ASWRP   95 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~---~~~----~~~l~~~~~---------d-~~i~iwd~~~~----~~~~~   95 (375)
                      ..|++.|..+.+.+..+.-. ...+.+++.   ..+    ..+++.|+.         . |.|.++++...    ..++.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888776665432 344555443   322    467777653         2 88999999873    23343


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      +.... ..++|.+++-- ++ +|+++. .+.|.+|++...+ ....-.......+.++...  ++ +++.|.....+.++
T Consensus        82 i~~~~-~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   82 IHSTE-VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEEE-ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEE
T ss_pred             EEEEe-ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCEEEE
Confidence            33332 26788888766 34 455553 4789999998777 4333220122345555544  45 78899888888877


Q ss_pred             eCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          175 DFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       175 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      ..+. .+.+..+...           ..+..++++.+-+      +++.++++..+|.+.++...
T Consensus       155 ~~~~~~~~l~~va~d-----------~~~~~v~~~~~l~------d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  155 RYDEENNKLILVARD-----------YQPRWVTAAEFLV------DEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTTE-EEEEEEE-----------SS-BEEEEEEEE-------SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEccCCEEEEEEec-----------CCCccEEEEEEec------CCcEEEEEcCCCeEEEEEEC
Confidence            5543 2223333211           0246788888886      45699999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.23  E-value=0.002  Score=53.57  Aligned_cols=244  Identities=14%  Similarity=0.080  Sum_probs=113.0

Q ss_pred             cCCCCCeeeecCCCceeEE-----EEecCCCCEEEEeCCCC--cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE
Q 017194            3 DAEAKPRRLRGHKATATCC-----IASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~-----~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~   75 (375)
                      .|+.++..|..+...-..+     +|.+++.++|..+..||  .+.+.|+.+++..+.-.+.........++|+.+.++.
T Consensus        18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y   97 (386)
T PF14583_consen   18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY   97 (386)
T ss_dssp             TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred             CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence            4666666676544333323     56777334555555554  5777788888765554433233335677888888887


Q ss_pred             EcCCCeEEEEECCCCCcccccccccCCCcceeEEEE--cCCCCeEEEEe---C-------------------CCcEEEEe
Q 017194           76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC--NPKSSFLACAD---D-------------------GGDVKIID  131 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~---~-------------------dg~i~iwd  131 (375)
                      ...+..|+-.|+++.+.. .+....  ...+-...|  +.++..++-.-   .                   ...|.-.|
T Consensus        98 v~~~~~l~~vdL~T~e~~-~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEER-VVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EETTTEEEEEETTT--EE-EEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EECCCeEEEEECCcCcEE-EEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            776778999999986542 333222  333333444  34555543221   1                   23455667


Q ss_pred             CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec---CC-eEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DS-KLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~-~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      +.+++....+.  -...+..+.|+|..+.+++-|-+   +. .-++|-+++ +...+.+....           ....+.
T Consensus       175 l~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-----------~~e~~g  241 (386)
T PF14583_consen  175 LKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-----------EGESVG  241 (386)
T ss_dssp             TTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------------TTEEEE
T ss_pred             CCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-----------CCcccc
Confidence            77777655555  45678899999988855555443   22 124554443 22222222110           112344


Q ss_pred             EEeecCCccccCCCCEEEEEe-----cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeee
Q 017194          207 AIAIPDADMLDKTNKICVVAK-----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI  271 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~  271 (375)
                      .=-|.|      +|..+.--+     .+..|.-+|+.++........   +...-+-.++||++++..|.
T Consensus       242 HEfw~~------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  242 HEFWVP------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             EEEE-T------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-
T ss_pred             cccccC------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCCCCEEEecCC
Confidence            445666      676655432     233567778877654332111   12334556788888876443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=0.00033  Score=55.20  Aligned_cols=177  Identities=10%  Similarity=0.080  Sum_probs=97.3

Q ss_pred             CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194          144 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                      +-...+.+++|.|+.+.++++....+.|..+++ +|+.+..+.+.            .....-.|++..      ++.++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~------------g~~D~EgI~y~g------~~~~v   79 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD------------GFGDYEGITYLG------NGRYV   79 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S------------S-SSEEEEEE-S------TTEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC------------CCCCceeEEEEC------CCEEE
Confidence            455579999999987767788888999999997 48888888765            234567888875      56666


Q ss_pred             EEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee-eee-cCCCccEEEEEEeec
Q 017194          224 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD-YSV-GGHTAAASCVAFSMF  301 (375)
Q Consensus       224 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~v~~~~~s~~  301 (375)
                      ++.-.++.+.++++........                               ....+.+ ..+ ..++..+-.++|.  
T Consensus        80 l~~Er~~~L~~~~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~N~G~EGla~D--  126 (248)
T PF06977_consen   80 LSEERDQRLYIFTIDDDTTSLD-------------------------------RADVQKISLGFPNKGNKGFEGLAYD--  126 (248)
T ss_dssp             EEETTTTEEEEEEE----TT---------------------------------EEEEEEEE---S---SS--EEEEEE--
T ss_pred             EEEcCCCcEEEEEEeccccccc-------------------------------hhhceEEecccccCCCcceEEEEEc--
Confidence            6555688999998854211000                               0000100 011 2356678999999  


Q ss_pred             CCCCcEEEEecCCCeEEEEeCCC---ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          302 GERGKYLISGGNDKLVKVWDCSR---FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       302 ~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                       +.++.|+.+-+..-..+|.+..   ......... ..+.........+.+++++|..+++++..+.+..|..+|.
T Consensus       127 -~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  127 -PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR  200 (248)
T ss_dssp             -TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE--HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred             -CCCCEEEEEeCCCChhhEEEccccCccceeeccc-cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence             7766666666665566666654   111100000 1111122344457888999988888888888888777663

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.18  E-value=0.0011  Score=56.31  Aligned_cols=164  Identities=13%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ec----------------CccEEEEEEeCCCCeEEEEc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VG----------------NGPVTSLCFKSGNEDIIYVS   77 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~----------------~~~v~~l~~~~~~~~l~~~~   77 (375)
                      ...+....|+|+ ++.+|-.. ++.|.+++..+++..+.-. +.                -+.-..+-|+||+++|+...
T Consensus        42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            567888999999 78887765 4679999987774432211 10                11235688999999988764


Q ss_pred             CCC------------------------------------eEEEEECCCCCccc--ccccccCCCcceeEEEEcCCCCeEE
Q 017194           78 SGK------------------------------------EVKSFDVHMPASWR--PLESYNYNKEEINQIVCNPKSSFLA  119 (375)
Q Consensus        78 ~d~------------------------------------~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~  119 (375)
                      .|.                                    .+.++|+.+++...  ...........+..+.|.++++.|+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            331                                    24444554443211  0101112245677889999888444


Q ss_pred             EEe--CC---CcEEEEeCcCceeeeeEecCcccce---eEEEEe-eCCCcEEEEeecCCe--EEEeeCCCCC
Q 017194          120 CAD--DG---GDVKIIDIRQHCLYKSLRAGHSSIC---SSVQFI-PWKPWEVISGGLDSK--LVMWDFSKGR  180 (375)
Q Consensus       120 ~~~--~d---g~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~~~~~d~~--i~~wd~~~~~  180 (375)
                      ..-  .+   ..+.++|..+++....+.......|   ....|. +++..++.....+|.  |.+++...+.
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~  271 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK  271 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence            433  22   2366778776644333331223332   355665 666656666667774  5555655444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.4e-05  Score=68.48  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=77.3

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee-EEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHC  136 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (375)
                      ...|.-+.|+|.-..+|.+..+|.+.+..+.    ++.+-.++-|...++ +++|.|||+.|++|-.||+|++.|++++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            3567889999999999999999999999887    455556654566676 99999999999999999999999999988


Q ss_pred             eeeeEecCcccceeEEEEee
Q 017194          137 LYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~  156 (375)
                      .+..+...-...|.++.|.+
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            77663213456788888864

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=0.0038  Score=51.20  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=89.9

Q ss_pred             EEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc-c
Q 017194           22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-N  100 (375)
Q Consensus        22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~  100 (375)
                      .|.++.+.++.+--..+.|.-|+..+++. ..+. +...+.++.....+..|+++.  ..+.+++.+++.....+... .
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            56777444666666778899999876653 3333 234445555544454555544  34566676554432222221 1


Q ss_pred             C-CCcceeEEEEcCCCCeEEEEeC-----------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194          101 Y-NKEEINQIVCNPKSSFLACADD-----------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus       101 ~-~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      + .....+.+...|+|.+.+....           -|.++.+|. .+..++.+. .+-..-+.|+|+|+++.++++=+..
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEEEeCCC
Confidence            1 1245677888999876654433           133444443 455655555 5566778999999998555555566


Q ss_pred             CeEEEeeCC
Q 017194          169 SKLVMWDFS  177 (375)
Q Consensus       169 ~~i~~wd~~  177 (375)
                      +.|.-|++.
T Consensus       185 ~~i~r~~~d  193 (307)
T COG3386         185 NRIHRYDLD  193 (307)
T ss_pred             CeEEEEecC
Confidence            888888876

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.08  E-value=0.00082  Score=44.84  Aligned_cols=103  Identities=10%  Similarity=0.096  Sum_probs=72.6

Q ss_pred             eeEEEEcC---CC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194          106 INQIVCNP---KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       106 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  181 (375)
                      |+++++..   +| +.|++|+.|..|++|+  ..+.+..+.  ....|.++.-...+  .|+.+..+|+|-+|+-  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~--e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~--~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT--ETDKVTSLCSLGGG--RFAYALANGTVGVYDR--SQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe--cccceEEEEEcCCC--EEEEEecCCEEEEEeC--cce
Confidence            45555544   33 5799999999999998  456777776  45678888877765  6999999999999985  344


Q ss_pred             ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC-CCEEEEEecCCcEE
Q 017194          182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVD  233 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~dg~i~  233 (375)
                      +..++              ....+.++++...   +.+ ...|++|-.+|.|-
T Consensus        74 lWRiK--------------SK~~~~~~~~~D~---~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIK--------------SKNQVTSMAFYDI---NGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeec--------------cCCCeEEEEEEcC---CCCCceEEEEEecCCeEE
Confidence            55555              2355777776653   111 23688888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2.6e-05  Score=67.00  Aligned_cols=94  Identities=13%  Similarity=0.104  Sum_probs=77.0

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEE-EEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      -.|.-+.|+|. -.++|.+..+|.|.+..++ .+.+.++..|+..++ +++|.|||+.|+.|-.||+|++.|++++..+.
T Consensus        21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            45777899998 8999999999999999988 777888887888888 99999999999999999999999999876544


Q ss_pred             ccccccCCCcceeEEEEcC
Q 017194           95 PLESYNYNKEEINQIVCNP  113 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~  113 (375)
                      ...-  .....|.++-|.+
T Consensus        99 ~~~~--s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLF--SVETDISKGIWDR  115 (665)
T ss_pred             cccc--ccccchheeeccc
Confidence            3211  1145777777763

>smart00320 WD40 WD40 repeats

Probab=98.07  E-value=8.6e-06  Score=43.58  Aligned_cols=39  Identities=31%  Similarity=0.475  Sum_probs=34.4

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEe
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD   44 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~   44 (375)
                      .+....+..|...|.++.|.+. +.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence            3456778899999999999998 78999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.05  E-value=0.0035  Score=55.69  Aligned_cols=194  Identities=11%  Similarity=0.088  Sum_probs=114.3

Q ss_pred             CCCcEEEEecccCceeeEeeecCc--------------------cE-EEEEEeCCCCeEEEEcCCC--------------
Q 017194           36 EDGCICWFDLRSKDVQLVTDVGNG--------------------PV-TSLCFKSGNEDIIYVSSGK--------------   80 (375)
Q Consensus        36 ~d~~i~iw~~~~~~~~~~~~~~~~--------------------~v-~~l~~~~~~~~l~~~~~d~--------------   80 (375)
                      .+|.+..+|.++|+.+-..+....                    .+ ...++.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            367889999999998776654211                    01 1234444556677776554              


Q ss_pred             ----eEEEEECCCCCccccccccc-------CCCcce-eEEEEcCCCC---eEEEEeCCCcEEEEeCcCceeeeeEecCc
Q 017194           81 ----EVKSFDVHMPASWRPLESYN-------YNKEEI-NQIVCNPKSS---FLACADDGGDVKIIDIRQHCLYKSLRAGH  145 (375)
Q Consensus        81 ----~i~iwd~~~~~~~~~~~~~~-------~~~~~v-~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (375)
                          .|.-+|.++++..-..+...       ....++ ..+. .-++.   .+++++.+|.+...|.++++.+-... ..
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~-~~  330 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP-EV  330 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE-ee
Confidence                78899999887654433211       000111 1110 01232   57888899999999999999887665 11


Q ss_pred             ccceeEEEEeeCCCcEEEEe------------------ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194          146 SSICSSVQFIPWKPWEVISG------------------GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~------------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                         ...++..| +  .+..+                  ..+|.+.-.|+.+++.+.+.............   .+.....
T Consensus       331 ---~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g---~~~~~~~  401 (488)
T cd00216         331 ---EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIG---FPHWGGS  401 (488)
T ss_pred             ---ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccC---CcccCcc
Confidence               12233444 2  23222                  24688999999999988877643000000000   0000112


Q ss_pred             EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      +..        .+..+++++.||.|+.+|..+++...+...
T Consensus       402 ~~~--------~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         402 LAT--------AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             eEe--------cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            222        467899999999999999999987776544

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.05  E-value=0.0031  Score=49.41  Aligned_cols=210  Identities=9%  Similarity=0.067  Sum_probs=122.4

Q ss_pred             eeEEEEecCCCCEEEEeCCCCc-EEEEecccCceeeEeeecCcc--EEEEEEeCCCCeEEEEcCC-----CeEEEEECCC
Q 017194           18 ATCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGP--VTSLCFKSGNEDIIYVSSG-----KEVKSFDVHM   89 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~   89 (375)
                      -..++++|.-..-++-+-.-|+ ..++|.+..+...++...++.  --.=.|+|||.+|.+.-.|     |.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            3456777775566666666555 567888887776665432221  1123689999988876554     6899999883


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeC------------------CCcEEEEeCcCceeeeeEec---Ccccc
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADD------------------GGDVKIIDIRQHCLYKSLRA---GHSSI  148 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~---~~~~~  148 (375)
                        ..+.+..+..|.-.-..+.+.+||+.++.+..                  .-.+.+.|..+++.+.+...   .+...
T Consensus       150 --~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         150 --GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             --ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence              45677777777777888999999999887642                  11233344344444332210   23456


Q ss_pred             eeEEEEeeCCCcEEEEeecCCe-----EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194          149 CSSVQFIPWKPWEVISGGLDSK-----LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                      +..++..++|. +++.+-..|.     -.+=-...+++++-+....      .........|-+|+.+..     ++-..
T Consensus       228 iRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe------e~~~~~anYigsiA~n~~-----~glV~  295 (366)
T COG3490         228 IRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE------EQTAAFANYIGSIAANRR-----DGLVA  295 (366)
T ss_pred             eeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCH------HHHHHHHhhhhheeeccc-----CCeEE
Confidence            78888888886 4444433221     1111122344444333220      000001245677888752     33334


Q ss_pred             EEEecCCcEEEEeCCCcc
Q 017194          224 VVAKGDGVVDVINIESEL  241 (375)
Q Consensus       224 ~~~~~dg~i~i~d~~~~~  241 (375)
                      +++-..+...+||..++.
T Consensus       296 lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         296 LTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             EecCCCCeEEEEEcCCCc
Confidence            444455678899999864

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.00018  Score=60.89  Aligned_cols=142  Identities=12%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-------EEEEcCCCeEEEEECCCCCcccccccccCC
Q 017194           30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-------IIYVSSGKEVKSFDVHMPASWRPLESYNYN  102 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  102 (375)
                      +|.++.....++-.|++.|+.+.....+.. |+-+.+.|+.+.       -+.|-.++.|+-||.+-... ..+....+|
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~k  425 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSK  425 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeecc
Confidence            345566667788889999999999987766 777888886532       24466688999999874322 111111111


Q ss_pred             ----CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194          103 ----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS  177 (375)
Q Consensus       103 ----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~  177 (375)
                          .....|.+-..+| +|++|+.+|.|++||--..+....++ +...+|..+..+.+|+++|+  +.+..+.+.++.
T Consensus       426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlP-gLG~~I~hVdvtadGKwil~--Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALP-GLGDAIKHVDVTADGKWILA--TCKTYLLLIDTL  500 (644)
T ss_pred             ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccc-ccCCceeeEEeeccCcEEEE--ecccEEEEEEEe
Confidence                3345666666666 89999999999999964334455566 88899999999999985444  445677777764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.00  E-value=0.0035  Score=56.49  Aligned_cols=184  Identities=16%  Similarity=0.168  Sum_probs=102.6

Q ss_pred             CCEEEEeCCCC------cEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCC------CeEEEEECCCCCccc
Q 017194           28 PGFVASSGEDG------CICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWR   94 (375)
Q Consensus        28 ~~~l~s~~~d~------~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~   94 (375)
                      +.+++.||.++      .+..+|..+++-.....- ....-.+++.. ++...++|+.+      .++..||..+++ +.
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-ee
Confidence            56777887773      688888887753222211 22233444444 45677888888      368888888664 55


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeCCCc-----EEEEeCcCcee--eeeEecCcccceeEEEEee-CCCcEEEEee
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADDGGD-----VKIIDIRQHCL--YKSLRAGHSSICSSVQFIP-WKPWEVISGG  166 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~  166 (375)
                      .+.............  .-+|...++|+.||.     +..||.++.+-  +..+.    .......... +|. +.++|+
T Consensus       363 ~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~----~~r~~~gv~~~~g~-iYi~GG  435 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML----TRRSGHGVAVLGGK-LYIIGG  435 (571)
T ss_pred             ccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCC----cceeeeEEEEECCE-EEEEcC
Confidence            544443212122111  226778888988864     77788765432  22222    1222222222 344 778887


Q ss_pred             cCC------eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc-----EEEE
Q 017194          167 LDS------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-----VDVI  235 (375)
Q Consensus       167 ~d~------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~i~  235 (375)
                      .++      ++..||..+++....-...            ....-..++.-       ++.+.++|+.|+.     +..|
T Consensus       436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~------------~~R~~~g~a~~-------~~~iYvvGG~~~~~~~~~VE~y  496 (571)
T KOG4441|consen  436 GDGSSNCLNSVECYDPETNTWTLIAPMN------------TRRSGFGVAVL-------NGKIYVVGGFDGTSALSSVERY  496 (571)
T ss_pred             cCCCccccceEEEEcCCCCceeecCCcc------------cccccceEEEE-------CCEEEEECCccCCCccceEEEE
Confidence            554      5678888776543322221            11122234443       5888899987762     5667


Q ss_pred             eCCC
Q 017194          236 NIES  239 (375)
Q Consensus       236 d~~~  239 (375)
                      |..+
T Consensus       497 dp~~  500 (571)
T KOG4441|consen  497 DPET  500 (571)
T ss_pred             cCCC
Confidence            7765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.00044  Score=63.17  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=94.9

Q ss_pred             EEEE-eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc-cccCCCCEEEEEecCCcEEEEeCC
Q 017194          161 EVIS-GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD-MLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       161 ~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      +|+. ......|+-.|+..|+.+..+..+            ...+|.  .+.|.. +..-+..-.++|-.++.+..||.+
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~------------~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVH------------DDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecC------------CCccee--EecccccccccCCCceEEEECCCceEEeccC
Confidence            4444 345678999999999999999976            222233  333321 111123445677778899999999


Q ss_pred             CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEE
Q 017194          239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK  318 (375)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~  318 (375)
                      -......                                  ....+.+ .......|++-+   .+| +||.|+.+|.||
T Consensus       561 ~~~~k~v----------------------------------~~~~k~Y-~~~~~Fs~~aTt---~~G-~iavgs~~G~IR  601 (794)
T PF08553_consen  561 LSGNKLV----------------------------------DSQSKQY-SSKNNFSCFATT---EDG-YIAVGSNKGDIR  601 (794)
T ss_pred             CCCCcee----------------------------------ecccccc-ccCCCceEEEec---CCc-eEEEEeCCCcEE
Confidence            5210000                                  0000111 234456777776   555 899999999999


Q ss_pred             EEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +||--..         ..-..+.+...+|..|+.+. ||++|++.+.. .|.+++
T Consensus       602 Lyd~~g~---------~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  602 LYDRLGK---------RAKTALPGLGDPIIGIDVTA-DGKWILATCKT-YLLLID  645 (794)
T ss_pred             eecccch---------hhhhcCCCCCCCeeEEEecC-CCcEEEEeecc-eEEEEE
Confidence            9994332         44445667889999999999 99988776643 454443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.97  E-value=0.0026  Score=54.87  Aligned_cols=187  Identities=9%  Similarity=-0.035  Sum_probs=100.8

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-------eeEeeecCccEEEEEEeCCCCeEEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------QLVTDVGNGPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~~   75 (375)
                      ..|+++.++.--.+.|.++.|+.+  +.|+.-..||.++++|+. |+.       +.........+....+..+|  ++.
T Consensus        68 ~sG~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivv  142 (410)
T PF04841_consen   68 SSGKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVV  142 (410)
T ss_pred             CCCCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEE
Confidence            456666666544588999999876  456666789999999986 333       11111112223333444455  333


Q ss_pred             EcCCCeEEEEECCCCC-cccccccccCCCc------ceeE-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc
Q 017194           76 VSSGKEVKSFDVHMPA-SWRPLESYNYNKE------EINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS  147 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~------~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (375)
                      -..++.+.+.+-.... ..+.+........      .... ..++.+....+....++.+.+.+-...+.   +.  ..+
T Consensus       143 Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~  217 (410)
T PF04841_consen  143 LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDG  217 (410)
T ss_pred             ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCC
Confidence            3445555444322211 1111111110000      0000 22333444444444445555443222111   22  346


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      ++..|+.+|+++ +++.-..+|.+.+.+..-.+....+...            .......+.|.-
T Consensus       218 ~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~------------~~~~p~~~~WCG  269 (410)
T PF04841_consen  218 PIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTD------------SKSPPKQMAWCG  269 (410)
T ss_pred             CeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecC------------cCCCCcEEEEEC
Confidence            899999999999 7888888999999987766666666644            234556777764

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.95  E-value=0.0049  Score=51.87  Aligned_cols=237  Identities=12%  Similarity=0.089  Sum_probs=105.7

Q ss_pred             CCEEEEeC-CCCcEEEEecccC----ceeeEeee---cC----ccEEEEEEeCCCCeEEEEcCC------CeEEEEECCC
Q 017194           28 PGFVASSG-EDGCICWFDLRSK----DVQLVTDV---GN----GPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHM   89 (375)
Q Consensus        28 ~~~l~s~~-~d~~i~iw~~~~~----~~~~~~~~---~~----~~v~~l~~~~~~~~l~~~~~d------~~i~iwd~~~   89 (375)
                      .++|+..+ ..+.|.|.|+.+.    +..+.++.   +.    .....+.--|+|+.++++-.|      |-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            35555554 6788999998743    33444442   11    112223334788888775322      4677878765


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeC--------------------CCcEEEEeCcCceeeeeEecCccc-c
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADD--------------------GGDVKIIDIRQHCLYKSLRAGHSS-I  148 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~-~  148 (375)
                      -+....-..-.....--..+-|.|..+.+++...                    ..++.+||+.+.+.++++..+..+ .
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            3322222221111233456777887777777642                    357999999999999999843332 4


Q ss_pred             eeEEEEeeC--CCcEEEEeecCCeEEEeeC-CCCC--cceEEecCCCCCCCCC------CcccCCCceeEEeecCCcccc
Q 017194          149 CSSVQFIPW--KPWEVISGGLDSKLVMWDF-SKGR--PNKIVNFGLPENNGNA------GQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       149 v~~~~~~~~--~~~~l~~~~~d~~i~~wd~-~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      +..+.|..+  ..+-|+.+...++|..|-- ..++  ..+.+..+.+......      ....-+.-++.|.+|.     
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-----  321 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-----  321 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-----
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-----
Confidence            556777544  4434555555566665544 3332  1222222211110000      0000135678888988     


Q ss_pred             CCCCEEEEEe-cCCcEEEEeCCCcceeecccc------------------cCCCCCCceeecccccceeeee
Q 017194          218 KTNKICVVAK-GDGVVDVINIESELNISRSKS------------------TTKPLKGSQSTSKVNIRDAEME  270 (375)
Q Consensus       218 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~~g~~~~~~~  270 (375)
                       |.++|.+.+ ..|.|+.||+.....+.....                  ........+.+|.||+.+.+..
T Consensus       322 -DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  322 -DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             -CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence             788888777 689999999987554432211                  1112346678889998887543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.94  E-value=6.6e-06  Score=61.61  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             CCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc-cceeeeeecCCCCCcEEEe--eCCCeEEEEecC
Q 017194          303 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVC--DTSKVVKVYSIS  375 (375)
Q Consensus       303 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg~v~iw~~~  375 (375)
                      .++.+..+++.||.|+.|++...         +.+.....|. .++..+..+. .+++|+++  |.|..++.|+++
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPN---------KVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccceeEEeccCCceeeeccccC---------ceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence            45568889999999999999987         4454555566 4555555555 55677777  788888888764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=0.0058  Score=47.99  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=65.7

Q ss_pred             EEEEEEeCCCCe-EEEEcCCC-eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCc
Q 017194           61 VTSLCFKSGNED-IIYVSSGK-EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIR  133 (375)
Q Consensus        61 v~~l~~~~~~~~-l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  133 (375)
                      -..++|+|.... ++.+-.-| ...++|....+....+...++ ..-.-.=.|+|||.+|+..-.|     |.|-+||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            345777775543 44444444 467889887665544433221 0111223699999999877543     679999987


Q ss_pred             Cc-eeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194          134 QH-CLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus       134 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      .+ +.+..+. .|.-..-.+.+.+||+ .++.+
T Consensus       149 ~~fqrvgE~~-t~GiGpHev~lm~DGr-tlvva  179 (366)
T COG3490         149 EGFQRVGEFS-THGIGPHEVTLMADGR-TLVVA  179 (366)
T ss_pred             cccceecccc-cCCcCcceeEEecCCc-EEEEe
Confidence            54 4566777 7777778899999998 45554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.92  E-value=0.002  Score=43.04  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=68.1

Q ss_pred             eeEEEEec---CCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           18 ATCCIASR---DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        18 i~~~~~~~---~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      |++|++..   ++.+.|+.|+.|..|++|+-+  +.+..+.. .+.|.+|.-... ..++.+-.+|+|-+|+-..  ..-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            55665544   444689999999999999843  55666664 567888877765 5689999999999998542  222


Q ss_pred             ccccccCCCcceeEEEEcC---CC-CeEEEEeCCCcEE
Q 017194           95 PLESYNYNKEEINQIVCNP---KS-SFLACADDGGDVK  128 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~  128 (375)
                      .++.    +..+.++.+..   || ..|++|-.+|.|-
T Consensus        76 RiKS----K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS----KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc----CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2332    33466665543   23 3588888888764

>PHA02713 hypothetical protein; Provisional

Probab=97.92  E-value=0.0052  Score=55.46  Aligned_cols=92  Identities=12%  Similarity=0.131  Sum_probs=47.2

Q ss_pred             cEEEEecccCceee--EeeecCccEEEEEEeCCCCeEEEEcCC------CeEEEEECCCCCcccccccccCCCcceeEEE
Q 017194           39 CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIV  110 (375)
Q Consensus        39 ~i~iw~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  110 (375)
                      .+..||..+++-..  .+...... .+++. -++...+.|+.+      ..+..||..+.. +..+............  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~--  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSL--  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeE--
Confidence            56778877665321  22111111 12222 356666777753      357788887653 3333333211111111  


Q ss_pred             EcCCCCeEEEEeCCC-----cEEEEeCcCc
Q 017194          111 CNPKSSFLACADDGG-----DVKIIDIRQH  135 (375)
Q Consensus       111 ~~~~~~~l~~~~~dg-----~i~iwd~~~~  135 (375)
                      ..-+++..+.|+.++     .+..||..+.
T Consensus       348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        348 AVIDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             EEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            223567777777654     4788998765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.91  E-value=0.0038  Score=50.97  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=98.0

Q ss_pred             cCCCCEEEEeCCCCcEEEEecc-cCceeeEee----ecCccEE-EEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194           25 RDRPGFVASSGEDGCICWFDLR-SKDVQLVTD----VGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        25 ~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~----~~~~~v~-~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      |.+++-+.+-+.||++.-..+. .|+......    ...+++. .-++...+..++-.+..|.|+--|+.... ......
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~  222 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKP  222 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEE
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCc
Confidence            3334567788889999999887 455432211    1122222 33445555566667889999888887532 121111


Q ss_pred             ccC----------CCcceeEEEEcCCCCeEEEEeC---C-------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCC
Q 017194           99 YNY----------NKEEINQIVCNPKSSFLACADD---G-------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        99 ~~~----------~~~~v~~~~~~~~~~~l~~~~~---d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (375)
                      ...          -.+.-.-+++++..+.|++.-.   +       ..|.++|+.+++.+.++.  -..++.+|+.+.+.
T Consensus       223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~  300 (342)
T PF06433_consen  223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDD  300 (342)
T ss_dssp             EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSS
T ss_pred             ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCC
Confidence            110          1234456788876666555321   1       148899999999999987  35578899999987


Q ss_pred             CcEEEEe-ecCCeEEEeeCCCCCcceEEe
Q 017194          159 PWEVISG-GLDSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       159 ~~~l~~~-~~d~~i~~wd~~~~~~~~~~~  186 (375)
                      +-+|++. ..++.+.+||..+++.+..++
T Consensus       301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             S-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             CcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            6455544 468999999999999988876

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00320 WD40 WD40 repeats

Probab=97.90  E-value=4.8e-05  Score=40.48  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45666778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.89  E-value=0.0057  Score=51.46  Aligned_cols=219  Identities=11%  Similarity=0.093  Sum_probs=95.6

Q ss_pred             CCCeEEEEc-CCCeEEEEECCCCCc-ccccccccC---C----CcceeEEEEcCCCCeEEEEe------CCCcEEEEeCc
Q 017194           69 GNEDIIYVS-SGKEVKSFDVHMPAS-WRPLESYNY---N----KEEINQIVCNPKSSFLACAD------DGGDVKIIDIR  133 (375)
Q Consensus        69 ~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~  133 (375)
                      +.++|+..+ ..+.|+|.|+.+... .+..+.++.   +    -.....+...|+|+.++++-      .-|.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 568999999985322 222222211   0    12233456678898888753      23468888888


Q ss_pred             CceeeeeEecC--cccceeEEEEeeCCCcEEEEeec--------------------CCeEEEeeCCCCCcceEEecCCCC
Q 017194          134 QHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGGL--------------------DSKLVMWDFSKGRPNKIVNFGLPE  191 (375)
Q Consensus       134 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~--------------------d~~i~~wd~~~~~~~~~~~~~~~~  191 (375)
                      +.+....+...  ....-..+-|.|..+ +++|...                    ..++.+||+.+.+.++++.++   
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg---  241 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG---  241 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES----
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC---
Confidence            88877777621  123446777888776 6776542                    358999999999999999987   


Q ss_pred             CCCCCCcccCCC-ceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeC-CCcceeecccccCCCCCCceeecccccceee
Q 017194          192 NNGNAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINI-ESELNISRSKSTTKPLKGSQSTSKVNIRDAE  268 (375)
Q Consensus       192 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  268 (375)
                               ... ....|.|..    +|+...-++++ -..+|..|-- ..+.-..+....                   
T Consensus       242 ---------~~g~~pLEvRflH----~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-------------------  289 (461)
T PF05694_consen  242 ---------EEGQMPLEVRFLH----DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-------------------  289 (461)
T ss_dssp             ---------TTEEEEEEEEE-S----STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-------------------
T ss_pred             ---------CCCCceEEEEecC----CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-------------------
Confidence                     222 344666655    33455444443 2334433322 222100000000                   


Q ss_pred             eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeCCCce
Q 017194          269 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ  326 (375)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~~~~~  326 (375)
                      +.............+..+..-..-|+.+.+|   .|.++|.... .+|.|+.||+....
T Consensus       290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS---lDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  290 IPAKKVEGWILPEMLKPFGAVPPLITDILIS---LDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             E--EE--SS---GGGGGG-EE------EEE----TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CCCcccCcccccccccccccCCCceEeEEEc---cCCCEEEEEcccCCcEEEEecCCCC
Confidence            0000000000000011112223558899999   8999887665 58999999998864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.87  E-value=0.015  Score=50.81  Aligned_cols=114  Identities=11%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             EEEEEEeCCCCeEEEEc-CCC----eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC----------
Q 017194           61 VTSLCFKSGNEDIIYVS-SGK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG----------  125 (375)
Q Consensus        61 v~~l~~~~~~~~l~~~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------  125 (375)
                      +....++|++++++.+- ..|    .++++|+++++....  .+.  ......+.|.++++.|+....+.          
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            34578899999988653 233    699999998754322  111  11223399999988876665332          


Q ss_pred             -cEEEEeCcCceee--eeEecCccc-c-eeEEEEeeCCCcEEEEeecC---CeEEEeeCCCC
Q 017194          126 -DVKIIDIRQHCLY--KSLRAGHSS-I-CSSVQFIPWKPWEVISGGLD---SKLVMWDFSKG  179 (375)
Q Consensus       126 -~i~iwd~~~~~~~--~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~  179 (375)
                       .|+.|.+.+...-  ..+. .... . ...+..+++++++++.....   ..+.+.|+..+
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe-~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFE-EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             cEEEEEECCCChHhCeeEEe-ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence             3788888765332  3344 2222 2 56788999999655555433   35888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.86  E-value=0.023  Score=52.49  Aligned_cols=317  Identities=12%  Similarity=-0.005  Sum_probs=163.5

Q ss_pred             CCceeEEEEecC--CCC---EEEEeCCCCcEEEEec-ccCceeeEe--ee--cCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194           15 KATATCCIASRD--RPG---FVASSGEDGCICWFDL-RSKDVQLVT--DV--GNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus        15 ~~~i~~~~~~~~--~~~---~l~s~~~d~~i~iw~~-~~~~~~~~~--~~--~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      +..|.|++++|-  +.+   +++.|..+..+.+.-. .....+...  .+  -...|.-..+-.+..+|.++..||.+.-
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            467999999975  233   7888876655444432 222222111  11  1345555666667889999999998876


Q ss_pred             EEC--CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEE-EeeC-CC
Q 017194           85 FDV--HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQ-FIPW-KP  159 (375)
Q Consensus        85 wd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~-~~~~-~~  159 (375)
                      +.+  .++.....-+..- ...++.--.|+..++.-+.+..|.-..+|.-+ ++.+ ..+.   -..+..++ |+.+ .+
T Consensus       610 fv~d~~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls---~kev~~~c~f~s~a~~  684 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLS---LKEVNHMCPFNSDAYP  684 (1096)
T ss_pred             EEEEcccceEcccccccc-CCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccc---hHHhhhhcccccccCC
Confidence            654  4443222222111 24566666666655444444455666666543 3332 2221   11222222 2221 12


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-----------
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-----------  228 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-----------  228 (375)
                      ..++++. .+.+++.-++.-+.+..-...            -......+++.+      ...++.+.+.           
T Consensus       685 d~l~~~~-~~~l~i~tid~iqkl~irtvp------------l~~~prrI~~q~------~sl~~~v~s~r~e~~~~~~~e  745 (1096)
T KOG1897|consen  685 DSLASAN-GGALTIGTIDEIQKLHIRTVP------------LGESPRRICYQE------SSLTFGVLSNRIESSAEYYGE  745 (1096)
T ss_pred             ceEEEec-CCceEEEEecchhhcceeeec------------CCCChhheEecc------cceEEEEEecccccchhhcCC
Confidence            1355544 345677666543333322211            113334444443      1222222211           


Q ss_pred             C---CcEEEEeCCCcceeecccccCCCCCCce---eeccc-ccceeeeeeeecCC----------------cceeEeeee
Q 017194          229 D---GVVDVINIESELNISRSKSTTKPLKGSQ---STSKV-NIRDAEMEILDQSG----------------GKRLHLDYS  285 (375)
Q Consensus       229 d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~s~~-g~~~~~~~~~~~~~----------------~~~~~~~~~  285 (375)
                      +   ..++++|-.+.+..............++   .|..| +.++++.......+                ...++.+.+
T Consensus       746 e~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e  825 (1096)
T KOG1897|consen  746 EYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE  825 (1096)
T ss_pred             cceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence            1   2477888887666554443333333333   36666 44444432221111                111222221


Q ss_pred             ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194          286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  365 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  365 (375)
                      ..- .+.+.++..    -+|++||.-+  ..|++|++.+.         +.++....+..++..+...- .++.++.|+.
T Consensus       826 ~~v-~Gav~aL~~----fngkllA~In--~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDl  888 (1096)
T KOG1897|consen  826 TVV-KGAVYALVE----FNGKLLAGIN--QSVRLYEWTTE---------RELRIECNISNPIIALDLQV-KGDEIAVGDL  888 (1096)
T ss_pred             eee-ccceeehhh----hCCeEEEecC--cEEEEEEcccc---------ceehhhhcccCCeEEEEEEe-cCcEEEEeec
Confidence            111 344555544    3788887665  57999999997         45666677788888887776 7888999887


Q ss_pred             CCeEEEE
Q 017194          366 SKVVKVY  372 (375)
Q Consensus       366 dg~v~iw  372 (375)
                      =+++.+-
T Consensus       889 m~Sitll  895 (1096)
T KOG1897|consen  889 MRSITLL  895 (1096)
T ss_pred             cceEEEE
Confidence            7766553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.84  E-value=0.009  Score=47.09  Aligned_cols=194  Identities=12%  Similarity=0.093  Sum_probs=112.9

Q ss_pred             eeEEEEecCCCCEEEEeCCCC--cEEEEecccCceeeEeeecCc-cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           18 ATCCIASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNG-PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      ...+.|..+ +.++-+.|.-|  .|+.+|+.+++......-... --..++... ++.....=.++...+||..+-+   
T Consensus        47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~---  121 (264)
T PF05096_consen   47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLK---  121 (264)
T ss_dssp             EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTE---
T ss_pred             CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccce---
Confidence            456777666 67777777766  799999999987665543221 112233332 2333333457899999998643   


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC-c---ccceeEEEEeeCCCcEEEEeecCCe
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-H---SSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      .+..+.. .+.=..++  .+++.|+.......++++|.++.+..+.+... .   -..++.+.|. +|. +.|-.-....
T Consensus       122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~  196 (264)
T PF05096_consen  122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDR  196 (264)
T ss_dssp             EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSE
T ss_pred             EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCe
Confidence            3333332 23445555  46777887777789999999888777666521 1   1256677776 454 6676777788


Q ss_pred             EEEeeCCCCCcceEEecCC--CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          171 LVMWDFSKGRPNKIVNFGL--PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      |...|..+|+....+.+..  +...............+.||+.|.     .++++++|
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~-----~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE-----TDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT-----TTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC-----CCEEEEEe
Confidence            9999999999888776431  000000011112456899999984     45555555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.78  E-value=0.012  Score=46.67  Aligned_cols=174  Identities=13%  Similarity=0.119  Sum_probs=116.3

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      +.|-+..|.++.|+|+ .+.|.+......-.|+=..+|+.+.++.-. -.....+.+..++++.++--.++.+.++.+..
T Consensus        81 i~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            3444556999999999 566666666666667766778888877532 23345678888888777777788888888765


Q ss_pred             CCcccc-------cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-e--eeeEecCc-------ccceeEE
Q 017194           90 PASWRP-------LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-L--YKSLRAGH-------SSICSSV  152 (375)
Q Consensus        90 ~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~-------~~~v~~~  152 (375)
                      +.....       +......+.....++|.|..+.|+.+-+-.-+.||.+.... .  +.... .+       -..|.++
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~~DvSgl  238 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFVLDVSGL  238 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-CcccccceEeeccccc
Confidence            432222       22222225677899999999888888777778887765332 1  11111 11       2357788


Q ss_pred             EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec
Q 017194          153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  187 (375)
                      .|.+..+.+++.+.+++.+.-.|.. |..+..+..
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL  272 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSL  272 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecC-CCeeeeEEe
Confidence            8988776678888888888888865 555555543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.77  E-value=0.0086  Score=54.08  Aligned_cols=150  Identities=15%  Similarity=0.127  Sum_probs=84.8

Q ss_pred             CceeEEEEecCCCCEEEEeC------CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC----------
Q 017194           16 ATATCCIASRDRPGFVASSG------EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----------   79 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----------   79 (375)
                      ..+...+++|+ ++.+|..-      .|+.-.||-...+.....+.. ......-.|+|+|+.+++....          
T Consensus       350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            35778899999 66655443      244334443322222233322 2347888999998877776533          


Q ss_pred             --CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEE---EeCcCce-ee---eeEecCccccee
Q 017194           80 --KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI---IDIRQHC-LY---KSLRAGHSSICS  150 (375)
Q Consensus        80 --~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~-~~---~~~~~~~~~~v~  150 (375)
                        +.+.+.++..+.. ..  .   ..+.|..+.|+|||..++... ++.|++   -....+. .+   ..+...-...+.
T Consensus       428 ~~gql~~~~vd~ge~-~~--~---~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        428 ATGQLARTPVDASAV-AS--R---VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV  500 (591)
T ss_pred             CCceEEEEeccCchh-hh--c---cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence              2333334433221 11  1   246799999999999988775 477777   3433443 11   112212333468


Q ss_pred             EEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194          151 SVQFIPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      ++.|.+++.  |+++..++...+|.+
T Consensus       501 ~l~W~~~~~--L~V~~~~~~~~v~~v  524 (591)
T PRK13616        501 SLDWRTGDS--LVVGRSDPEHPVWYV  524 (591)
T ss_pred             cceEecCCE--EEEEecCCCCceEEE
Confidence            899999986  445555444444443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.73  E-value=0.011  Score=53.36  Aligned_cols=103  Identities=11%  Similarity=0.032  Sum_probs=63.5

Q ss_pred             ccEEEEEEeCCCCeEEEEc------CCC--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC------
Q 017194           59 GPVTSLCFKSGNEDIIYVS------SGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------  124 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------  124 (375)
                      ..+.+.+++|+|+.++...      .|.  .|.+++..  .....+..    ......-.|+|+|..|++....      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~----g~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLE----GHSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceeeec----CCCCCCceECCCCCceEEEecCcceEEE
Confidence            4678899999999887765      243  55555543  22233321    2247888999998877776432      


Q ss_pred             ------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194          125 ------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus       125 ------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                            +.+.+.+++.++...  .  ....|..+.|+|||.. ++... +++|++
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSpDG~R-iA~i~-~g~v~V  472 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--R--VPGPISELQLSRDGVR-AAMII-GGKVYL  472 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--c--cCCCcCeEEECCCCCE-EEEEE-CCEEEE
Confidence                  233333444333322  1  2457999999999994 44433 477777

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.0011  Score=56.36  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=93.6

Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc-cCCCCEEEEEecCCcEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML-DKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~l~~~~~dg~i~i  234 (375)
                      .+.+.+|.++.....++-.|+..|+.+..+++.              ..|+-+.+.|..-. .-+...-++|-.++.|.-
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr  408 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFR  408 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEE
Confidence            344435556677778999999999999999976              34777777773100 001112345667788999


Q ss_pred             EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND  314 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d  314 (375)
                      ||++-....                     .|+            ...-+.+.. .....|.+-.   .+| +++.||.+
T Consensus       409 iDpRv~~~~---------------------kl~------------~~q~kqy~~-k~nFsc~aTT---~sG-~IvvgS~~  450 (644)
T KOG2395|consen  409 IDPRVQGKN---------------------KLA------------VVQSKQYST-KNNFSCFATT---ESG-YIVVGSLK  450 (644)
T ss_pred             ecccccCcc---------------------eee------------eeecccccc-ccccceeeec---CCc-eEEEeecC
Confidence            998831000                     000            000011111 2334555544   444 89999999


Q ss_pred             CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194          315 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  365 (375)
Q Consensus       315 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  365 (375)
                      |.|++||--..         ..-..+++...+|..+..+. +|++|+..+.
T Consensus       451 GdIRLYdri~~---------~AKTAlPgLG~~I~hVdvta-dGKwil~Tc~  491 (644)
T KOG2395|consen  451 GDIRLYDRIGR---------RAKTALPGLGDAIKHVDVTA-DGKWILATCK  491 (644)
T ss_pred             CcEEeehhhhh---------hhhhcccccCCceeeEEeec-cCcEEEEecc
Confidence            99999998333         44456788899999999998 9998776654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.70  E-value=0.03  Score=48.95  Aligned_cols=197  Identities=14%  Similarity=0.114  Sum_probs=106.7

Q ss_pred             eeEEEEecCCCCEEEEe-CCC----CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC-----------e
Q 017194           18 ATCCIASRDRPGFVASS-GED----GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-----------E   81 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~-~~d----~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-----------~   81 (375)
                      +....++|+ ++++|.+ +..    ..|+++|+++++.+...-. ......+.|.++++.|+....+.           .
T Consensus       126 ~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            335788999 7777744 332    4699999999976543211 11223399999988887765432           4


Q ss_pred             EEEEECCCCCcccccccccCCCcc--eeEEEEcCCCCeEEEEeC---C-CcEEEEeCcCc----eeeeeEecCcccceeE
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEE--INQIVCNPKSSFLACADD---G-GDVKIIDIRQH----CLYKSLRAGHSSICSS  151 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~v~~  151 (375)
                      |+.|.+.++.... ...+......  ...+..++++++|+....   + ..+++.|+..+    .....+. .....+..
T Consensus       204 v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~  281 (414)
T PF02897_consen  204 VYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEY  281 (414)
T ss_dssp             EEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EE
T ss_pred             EEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEE
Confidence            7888887654321 1222221222  567889999999776542   2 35788888764    2333333 23333333


Q ss_pred             EEEeeCCCcEEEEe---ecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCC--ceeEEeecCCccccCCCCEEE
Q 017194          152 VQFIPWKPWEVISG---GLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPA--FVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       152 ~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      ..-+..+. +++..   ...+.|...++.....  ....-..            +..  .+..+...       .+.+++
T Consensus       282 ~v~~~~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~------------~~~~~~l~~~~~~-------~~~Lvl  341 (414)
T PF02897_consen  282 YVDHHGDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP------------EDEDVSLEDVSLF-------KDYLVL  341 (414)
T ss_dssp             EEEEETTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--------------SSSEEEEEEEEE-------TTEEEE
T ss_pred             EEEccCCE-EEEeeCCCCCCcEEEEecccccccccceeEEcC------------CCCceeEEEEEEE-------CCEEEE
Confidence            33233443 33333   2346777778776653  1212112            122  35555553       244555


Q ss_pred             EEecCC--cEEEEeCC
Q 017194          225 VAKGDG--VVDVINIE  238 (375)
Q Consensus       225 ~~~~dg--~i~i~d~~  238 (375)
                      ....++  .|+++++.
T Consensus       342 ~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  342 SYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEETTEEEEEEEETT
T ss_pred             EEEECCccEEEEEECC
Confidence            555554  57888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.67  E-value=0.0041  Score=56.09  Aligned_cols=185  Identities=8%  Similarity=0.019  Sum_probs=94.0

Q ss_pred             CCEEEEeCCC------CcEEEEecccCcee--eEeeecCccEEEEEEeCCCCeEEEEcCCC-----eEEEEECCCCCccc
Q 017194           28 PGFVASSGED------GCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWR   94 (375)
Q Consensus        28 ~~~l~s~~~d------~~i~iw~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~   94 (375)
                      +.+.+.||.+      ..+..||..+..-.  ..+....... +++ .-+++..+.|+.++     .+..||..++ .+.
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~-~W~  380 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDD-KWK  380 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCC-eEE
Confidence            5667777753      24677887665421  1111111111 222 23566777777653     5888998864 344


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeCCC-----------------------cEEEEeCcCcee--eeeEecCcccce
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADDGG-----------------------DVKIIDIRQHCL--YKSLRAGHSSIC  149 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~--~~~~~~~~~~~v  149 (375)
                      .+............+.  -+++..+.|+.++                       .+..||.++.+-  +..+. ..... 
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r~~-  456 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGTIR-  456 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-ccccc-
Confidence            4443322111222222  2566777776542                       477788776532  22222 11111 


Q ss_pred             eEEEEeeCCCcEEEEeecC------CeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCE
Q 017194          150 SSVQFIPWKPWEVISGGLD------SKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI  222 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  222 (375)
                      .+++ .-++. +.+.|+.+      ..+..||..+ .+-...-...            .+.....++..       ++++
T Consensus       457 ~~~~-~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~------------~~r~~~~~~~~-------~~~i  515 (557)
T PHA02713        457 PGVV-SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE------------SRLSALHTILH-------DNTI  515 (557)
T ss_pred             CcEE-EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccC------------cccccceeEEE-------CCEE
Confidence            1222 22344 67777654      2467888876 4432221111            11112233333       6899


Q ss_pred             EEEEecCC--cEEEEeCCCc
Q 017194          223 CVVAKGDG--VVDVINIESE  240 (375)
Q Consensus       223 l~~~~~dg--~i~i~d~~~~  240 (375)
                      .++|+.+|  .+..||..+.
T Consensus       516 yv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        516 MMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             EEEeeecceeehhhcCcccc
Confidence            99999888  6777777764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.63  E-value=0.044  Score=49.15  Aligned_cols=48  Identities=4%  Similarity=0.037  Sum_probs=33.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          219 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       219 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                      .+.+++.++.+|.++.+|.++++.+............-+.+..+|++.
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY  518 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY  518 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence            356788888899999999999988876655433333344444555543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.59  E-value=0.051  Score=48.77  Aligned_cols=200  Identities=11%  Similarity=0.039  Sum_probs=114.0

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecC-ccEE---E-------EEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVT---S-------LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE   97 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~---~-------l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   97 (375)
                      ..|+.++.++.|.-.|..+|+.+-.+.... ..+.   +       +++.  +..++.++.++.+.-.|.++++..-...
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            466667778899999999999877664321 1111   1       1222  3457778889999999999887654433


Q ss_pred             cccCC-CcceeE-EEEcCCCCeEEEEe------CCCcEEEEeCcCceeeeeEecCccc----------------------
Q 017194           98 SYNYN-KEEINQ-IVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLRAGHSS----------------------  147 (375)
Q Consensus        98 ~~~~~-~~~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~----------------------  147 (375)
                      ..... ...+.+ ... .++ .++++.      .+|.|..+|.++++.+-.+......                      
T Consensus       148 ~~~~~~~~~~tssP~v-~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       148 NGDYKAGYTITAAPLV-VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             cccccccccccCCcEE-ECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            21100 011111 111 134 455543      2688999999999887655411100                      


Q ss_pred             --------ce-eEEEEeeCCCcEEEEeec-----CC-----------eEEEeeCCCCCcceEEecCCCCCCCCCCcccCC
Q 017194          148 --------IC-SSVQFIPWKPWEVISGGL-----DS-----------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP  202 (375)
Q Consensus       148 --------~v-~~~~~~~~~~~~l~~~~~-----d~-----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (375)
                              .+ ..+++.|... ++..+..     ++           .|.-.|+++|+....++....+.-+   .- ..
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD---~d-~~  300 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD---YD-GV  300 (527)
T ss_pred             CccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc---cc-CC
Confidence                    11 1345666555 4544441     12           6777888899888877643111000   00 00


Q ss_pred             CceeEEeecCCccccCCCC---EEEEEecCCcEEEEeCCCccee
Q 017194          203 AFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      ....-+.+..      +++   .++.+..+|.+.++|.++++.+
T Consensus       301 ~~p~l~d~~~------~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       301 NEMILFDLKK------DGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCcEEEEecc------CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            1111122211      455   7889999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.034  Score=45.75  Aligned_cols=225  Identities=12%  Similarity=0.047  Sum_probs=121.5

Q ss_pred             EEeCCCCeEE-EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec
Q 017194           65 CFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA  143 (375)
Q Consensus        65 ~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (375)
                      .|.++...|+ +--..+.|.-|+..+++. ..+..    ...+.++..-..+..|+++.  ..+.+++.+++..+..+..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~----p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS----PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC----CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence            4566666443 334467888888875432 11111    23344444434444555443  2366677665544332220


Q ss_pred             ----CcccceeEEEEeeCCCcEEEEeecC------------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194          144 ----GHSSICSSVQFIPWKPWEVISGGLD------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       144 ----~~~~~v~~~~~~~~~~~~l~~~~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                          ......+.+...|+|.  +..++..            |.|+.+|. .+...+.+..             +-..-+.
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-------------~~~~~NG  167 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-------------DLTIPNG  167 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-------------cEEecCc
Confidence                1124567888899987  3333322            33333443 3333333321             1245578


Q ss_pred             EeecCCccccCCCCEEEEEecC-CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194          208 IAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  286 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
                      |+|+|      +++.|+.+... +.|+-|++......                 .               ... ......
T Consensus       168 la~Sp------Dg~tly~aDT~~~~i~r~~~d~~~g~-----------------~---------------~~~-~~~~~~  208 (307)
T COG3386         168 LAFSP------DGKTLYVADTPANRIHRYDLDPATGP-----------------I---------------GGR-RGFVDF  208 (307)
T ss_pred             eEECC------CCCEEEEEeCCCCeEEEEecCcccCc-----------------c---------------CCc-ceEEEc
Confidence            99999      78888877654 78888877630000                 0               000 111122


Q ss_pred             cCCCccEEEEEEeecCCCCcEEEEecCCC-eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194          287 GGHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      ....+..-.++..   .+|.+.+++-.+| .|.+|+.. +         +++....-....+++++|--++.+.|+..+
T Consensus       209 ~~~~G~PDG~~vD---adG~lw~~a~~~g~~v~~~~pd-G---------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         209 DEEPGLPDGMAVD---ADGNLWVAAVWGGGRVVRFNPD-G---------KLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             cCCCCCCCceEEe---CCCCEEEecccCCceEEEECCC-C---------cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            2234555566777   7888776555554 89999988 5         444444444467788888765556655544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.035  Score=44.03  Aligned_cols=198  Identities=14%  Similarity=0.105  Sum_probs=116.3

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      +-+..+.++.   +++..+..+.-++|.|+.+......+..-+-.=.+-.|.-.|++...+..+.-+.+.|+.+......
T Consensus        87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            3455566653   4666666666799999987654333321111112233444588888888777788999987765555


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee---eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      ...+......-..++.+  |++-..+..|+-+.+.|+.....   +....  ....+.++..+++..  +++-. +--+.
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsdnr~--y~vvy-~egvl  236 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSDNRA--YLVVY-DEGVL  236 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecCCee--EEEEc-ccceE
Confidence            44444434444556654  55777777899999999975533   33333  223667776666643  33333 33467


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      +-|....+....+..-.+         ..+..+..+.+        .+++...+..+.-+.+-|..+.
T Consensus       237 ivd~s~~ssp~~~gsyet---------~~p~~~s~v~V--------s~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         237 IVDVSGPSSPTVFGSYET---------SNPVSISTVPV--------SGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             EEecCCCCCceEeecccc---------CCcccccceec--------ccceeeeeccccCceeEeccCC
Confidence            777776654444432200         01223333444        3777777777777788887753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.45  E-value=0.059  Score=46.15  Aligned_cols=53  Identities=9%  Similarity=0.074  Sum_probs=41.7

Q ss_pred             EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK  345 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  345 (375)
                      .....+......+.++..+   |++++.|+...=|.|.++|+.++         ..++...|..+
T Consensus       298 ~~r~~l~D~~R~~~~i~~s---P~~~laA~tDslGRV~LiD~~~~---------~vvrmWKGYRd  350 (415)
T PF14655_consen  298 PMRFGLPDSKREGESICLS---PSGRLAAVTDSLGRVLLIDVARG---------IVVRMWKGYRD  350 (415)
T ss_pred             ceEEeeccCCceEEEEEEC---CCCCEEEEEcCCCcEEEEECCCC---------hhhhhhccCcc
Confidence            4445566667778999999   89999998888899999999998         66666666543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.40  E-value=0.021  Score=51.66  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCC------CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC------CcEEEEeCcCce
Q 017194           69 GNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHC  136 (375)
Q Consensus        69 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  136 (375)
                      .+..++.|+.+      ..+..+|..++. +..+..... ...-.+++.. ++...++|+.|      .++..||.++.+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE-WSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCc-EeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            34556667666      367888888652 344433332 2223334443 45677888887      357788887664


Q ss_pred             eeeeEecCcccceeEEEEee-CCCcEEEEeecCCe-----EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194          137 LYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSK-----LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI  210 (375)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (375)
                      =.. +. .....-....... +|. +.++|+.||.     +-.||..+.+....-...            ....-.+++.
T Consensus       361 W~~-~a-~M~~~R~~~~v~~l~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~------------~~r~~~gv~~  425 (571)
T KOG4441|consen  361 WTP-VA-PMNTKRSDFGVAVLDGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML------------TRRSGHGVAV  425 (571)
T ss_pred             eec-cC-CccCccccceeEEECCE-EEEEeccccccccccEEEecCCCCcccccCCCC------------cceeeeEEEE
Confidence            221 11 1111111112222 344 8899998864     667777765433222111            0111122222


Q ss_pred             cCCccccCCCCEEEEEecCC------cEEEEeCCCc
Q 017194          211 PDADMLDKTNKICVVAKGDG------VVDVINIESE  240 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~  240 (375)
                      .       ++.+.++|+.++      ++..||..++
T Consensus       426 ~-------~g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  426 L-------GGKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             E-------CCEEEEEcCcCCCccccceEEEEcCCCC
Confidence            2       688888888554      4667777753

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.38  E-value=0.038  Score=42.31  Aligned_cols=194  Identities=12%  Similarity=0.139  Sum_probs=96.5

Q ss_pred             CCEEEEeCCCCcEEEEecccCcee-eEeeecCccEEEEEEeC-CCC--eEEEEcCCCeEEEEECCCC--Ccccc---ccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQ-LVTDVGNGPVTSLCFKS-GNE--DIIYVSSGKEVKSFDVHMP--ASWRP---LES   98 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~l~~~~-~~~--~l~~~~~d~~i~iwd~~~~--~~~~~---~~~   98 (375)
                      +.++..--..|.|.-||..+.+.. ..+++  .++.++.+-- ++.  +.+.++..-.|--||-...  .....   +..
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            445555445566777888765532 22332  2234444422 222  2233332223445653211  11111   111


Q ss_pred             ccCCCcceeEEEEcCCCCeEEEEeC-C---------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           99 YNYNKEEINQIVCNPKSSFLACADD-G---------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      .. .+...+.-..+|+|+++ .|.. |         |.++.|-.  +..+..+. ..-..-+.++|+.+.+.+.++-+.+
T Consensus       105 d~-kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  105 DR-KKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             hH-HhcccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeee-hhccCCccccccccCcEEEEEccCc
Confidence            11 13456677788999884 3332 1         33444432  11122222 2233447889998887667777788


Q ss_pred             CeEEEee--CCCCCcce---EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          169 SKLVMWD--FSKGRPNK---IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       169 ~~i~~wd--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      -.|.-||  ..+|....   .+.+..       .+...+...-.+++..      +|.+.++.-..++|..+|..+++
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk-------~~~~e~~~PDGm~ID~------eG~L~Va~~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRK-------SQPFESLEPDGMTIDT------EGNLYVATFNGGTVQKVDPTTGK  244 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEecc-------CCCcCCCCCCcceEcc------CCcEEEEEecCcEEEEECCCCCc
Confidence            8887787  45543221   111110       0000111222344443      68888888888999999999864

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.0013  Score=60.66  Aligned_cols=102  Identities=17%  Similarity=0.260  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI  148 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  148 (375)
                      .+..++.|+..|.+-..|+...  +.++..-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+. .|..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence            3456888888899988887743  22222222336899999999999999999999999999999999988887 66666


Q ss_pred             eeEEEE---eeCCCcEEEEeecCCeEEEeeC
Q 017194          149 CSSVQF---IPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus       149 v~~~~~---~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      .+++-+   ..++. .++++...|.  +|.+
T Consensus       175 ~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            555543   34444 5777777776  5554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.055  Score=43.04  Aligned_cols=173  Identities=9%  Similarity=0.064  Sum_probs=107.2

Q ss_pred             ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc
Q 017194           56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH  135 (375)
Q Consensus        56 ~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (375)
                      +-...+.++.|+|+.+.|++......-.++=...|+.+..+.-. + -.....+.+..++++.++--.++.+.++.+...
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            34455999999999999998887766666655555544443322 1 234456778888888888778888888877654


Q ss_pred             eeeeeEe-------c-Cc-ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          136 CLYKSLR-------A-GH-SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       136 ~~~~~~~-------~-~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      ..+..+.       . .+ +.....++|.|.+. .|+.+-+-.-+.+|.+......-.....  .... ....+.-..+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~--~~~~-~~~~~f~~DvS  236 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHAS--LDPT-ADRDLFVLDVS  236 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccc--cCcc-cccceEeeccc
Confidence            2222111       0 12 55778999999988 6777777777777776533211111100  0000 00001123456


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ++.|.+.     .+.+|+-+.+++.+.-.|...
T Consensus       237 gl~~~~~-----~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         237 GLEFNAI-----TNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cceecCC-----CCcEEEEecCCceEEEEecCC
Confidence            6777764     678888888888888888775

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.22  E-value=0.086  Score=43.12  Aligned_cols=147  Identities=14%  Similarity=0.171  Sum_probs=92.1

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc----------
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE----------   97 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------   97 (375)
                      ++.|+.|..+| +.+++.........+. +..+|..+...|+-+.|++-+ |+.++++++..-.......          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            67899999998 8999983222222222 234499999999888777666 6999999987532222110          


Q ss_pred             --cccCCCcceeEEE--EcCCC-CeEEEEeCCCcEEEEeCcCc-----eeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           98 --SYNYNKEEINQIV--CNPKS-SFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        98 --~~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                        .. .....+...+  -...+ ..|+++ ....|.+|.....     +..+.+.  -...+.+++|.++   .++.|..
T Consensus        84 ~~~~-~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~~---~i~v~~~  156 (275)
T PF00780_consen   84 PTKL-PETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLGN---KICVGTS  156 (275)
T ss_pred             cccc-cccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeCC---EEEEEeC
Confidence              11 1123344444  11233 344444 4558888887653     4556665  4578899999944   5777765


Q ss_pred             CCeEEEeeCCCCCcceEE
Q 017194          168 DSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~  185 (375)
                      + ...+.|+.++.....+
T Consensus       157 ~-~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  157 K-GFYLIDLNTGSPSELL  173 (275)
T ss_pred             C-ceEEEecCCCCceEEe
Confidence            4 5889999977665444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.21  E-value=0.0026  Score=48.20  Aligned_cols=103  Identities=15%  Similarity=0.186  Sum_probs=61.7

Q ss_pred             CCeEEEEcCCCeEEEEECCCCCcc-cccccccCCCcceeE-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc-
Q 017194           70 NEDIIYVSSGKEVKSFDVHMPASW-RPLESYNYNKEEINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-  146 (375)
Q Consensus        70 ~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-  146 (375)
                      +..++.|+.+|.|++|+....... ..+...   ...|.+ +.-..++.+..+++.+|.|+.|++.-.+.+.... .|. 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNF  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcc---cccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccC
Confidence            456889999999999987621111 111111   222322 3333356688899999999999998887776666 666 


Q ss_pred             cceeEEEEeeCCCcEEEEe--ecCCeEEEeeCC
Q 017194          147 SICSSVQFIPWKPWEVISG--GLDSKLVMWDFS  177 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~--~~d~~i~~wd~~  177 (375)
                      .++..+..+..++ +++.+  +.|..++.|++.
T Consensus       146 ~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  146 ESGEELIVVGSDE-FLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CCcceeEEecCCc-eEEeeccccchhhhhcchh
Confidence            3444433343333 34444  555555555554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.19  E-value=0.093  Score=43.01  Aligned_cols=155  Identities=15%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE-CCCCCc
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD-VHMPAS   92 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd-~~~~~~   92 (375)
                      -.+.+..+..+++ +++++++..-....-|+.....-...-......|.++.|.|++...+ ....|.|+.=+ ......
T Consensus       143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGET  220 (302)
T ss_dssp             ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEE
T ss_pred             CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccc
Confidence            3466888888888 88998887766667787543222222233468899999999987655 44788888887 222222


Q ss_pred             ccc-cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec--CcccceeEEEEeeCCCcEEEEeecCC
Q 017194           93 WRP-LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        93 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      +.. +.........+..++|.+++...++|+ .|.+ +...+.++.=+..+.  .-...+..+.|.+..+  -+..+.+|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~--gf~lG~~G  296 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK--GFVLGQDG  296 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE--EEEE-STT
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc--eEEECCCc
Confidence            211 111111234588999999887777664 4544 344455554333331  2244678888887654  45556778


Q ss_pred             eEEEe
Q 017194          170 KLVMW  174 (375)
Q Consensus       170 ~i~~w  174 (375)
                      .|.-|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77655

>PHA03098 kelch-like protein; Provisional

Probab=97.16  E-value=0.12  Score=46.94  Aligned_cols=145  Identities=10%  Similarity=0.029  Sum_probs=70.7

Q ss_pred             CCEEEEeCCCC------cEEEEecccCceeeE--eeecCccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCccc
Q 017194           28 PGFVASSGEDG------CICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWR   94 (375)
Q Consensus        28 ~~~l~s~~~d~------~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~   94 (375)
                      +.+++.||.++      .+..||..+.+-...  +.........+  .-+++..+.|+.+     ..+..||..+++ +.
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~  371 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESK-WR  371 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCc-ee
Confidence            45667776542      467788776554221  11111111222  2356677777765     357788887543 34


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeCC------CcEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ............ +++ .-+++.++.|+.+      ..+..||+.+.+-.  ..+. ..... .++ ...++. +++.|+
T Consensus       372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~-~~~-~~~~~~-iyv~GG  445 (534)
T PHA03098        372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYG-GCA-IYHDGK-IYVIGG  445 (534)
T ss_pred             eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccC-ceE-EEECCE-EEEECC
Confidence            333322111111 112 2256666666632      35888998765321  1111 11111 122 223444 667776


Q ss_pred             cC--------CeEEEeeCCCCCc
Q 017194          167 LD--------SKLVMWDFSKGRP  181 (375)
Q Consensus       167 ~d--------~~i~~wd~~~~~~  181 (375)
                      .+        ..+..||..+++-
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCce
Confidence            43        2378888876654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.15  E-value=0.0018  Score=35.99  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=29.2

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD   49 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~   49 (375)
                      ...|.+++|+|. ..+||.+..+|.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCc
Confidence            457999999999 899999999999999998 444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.08  E-value=0.0022  Score=35.63  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=29.8

Q ss_pred             ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194          146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  181 (375)
                      ...|..++|+|..+ ++|.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            45799999999999 8999999999999998 4544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.003  Score=58.49  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             CCEEEEeCCCCcEEEEecccCce-eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194           28 PGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI  106 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  106 (375)
                      +..++.|+..|.+...|....-. ...=..-..+|++++|+.+|..++.|-.+|.|.+||...++..+.+.........|
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            44688888888888888764321 11112236899999999999999999999999999999776666665544333445


Q ss_pred             eEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194          107 NQIVCNPKSSFLACADDGGDVKIIDI  132 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (375)
                      ..+.+..++..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            55555566667888877776  4543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.08  E-value=0.16  Score=43.67  Aligned_cols=148  Identities=11%  Similarity=0.206  Sum_probs=89.1

Q ss_pred             cCCCCEEEEeCCCCcEEEEecccCce-----eeEeeecCccEEEEEEeC-----CCCeEEEEcCCCeEEEEECCCCCcc-
Q 017194           25 RDRPGFVASSGEDGCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASW-   93 (375)
Q Consensus        25 ~~~~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~-   93 (375)
                      +++...|++|+..|.++||+...++.     +.+.+ -..+|..+..-.     +...||. =.-+.+.+|.+...... 
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence            33456899999999999999865442     11222 257888877632     2233443 44678888887321100 


Q ss_pred             -----cccccccCCC--cceeEEEEcC----C-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           94 -----RPLESYNYNK--EEINQIVCNP----K-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        94 -----~~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                           ..+.....|.  .....+++-|    . ..+|.+-+.||.+.+++-+.......+. . ---...+.|.+..+ .
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~-~llPgPl~Y~~~tD-s  188 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-D-FLLPGPLCYCPRTD-S  188 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-C-CCCCcCeEEeecCC-E
Confidence                 1111111111  1222333322    2 3578888999999999976544444443 2 33345688888887 6


Q ss_pred             EEEeecCCeEEEeeCC
Q 017194          162 VISGGLDSKLVMWDFS  177 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~  177 (375)
                      |++++.+..+..|...
T Consensus       189 fvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEEecCceeEEEecHH
Confidence            9999999999988763

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.1  Score=39.25  Aligned_cols=104  Identities=6%  Similarity=-0.036  Sum_probs=66.2

Q ss_pred             CCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCC
Q 017194          114 KSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE  191 (375)
Q Consensus       114 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  191 (375)
                      ++.++.+.+.  ...|++||+.+++.+..-+ -....+..=-...-++++....-.+|.-..+|.++-+++..+.+.   
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~-l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK-LAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEee-cCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC---
Confidence            4455555553  4569999999888876554 211222211122224435555667899999999999988888755   


Q ss_pred             CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                                 +.-..++.        +++.|+.++....++.-|.++.
T Consensus       131 -----------GeGWgLt~--------d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         131 -----------GEGWGLTS--------DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             -----------Ccceeeec--------CCcceEeeCCceEEEecCHHHh
Confidence                       44455655        4566777766667887777764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.90  E-value=0.16  Score=40.80  Aligned_cols=145  Identities=14%  Similarity=0.037  Sum_probs=83.9

Q ss_pred             ceeEEEEecCCCCEEEEeC-CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE-CCCCCcc-
Q 017194           17 TATCCIASRDRPGFVASSG-EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD-VHMPASW-   93 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~-   93 (375)
                      .+.+.+++++ ++.+|... .++.-.||-...+.....+. ....+..-.|.+++...+....+...+++. ..++... 
T Consensus        25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCC-CCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            6888999999 56554433 23333344333333333332 234788889999987666666566666664 2322211 


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEe---CCCcEEEEeCc---Cc--e----eeeeEecCcccceeEEEEeeCCCcE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIR---QH--C----LYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~--~----~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ..+.... -...|..+.++|||..++...   .++.|.+--+.   .+  .    ...... .....+.++.|.+++. +
T Consensus       103 ~~v~~~~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~~~-L  179 (253)
T PF10647_consen  103 VEVDWPG-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDDST-L  179 (253)
T ss_pred             EEecccc-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCCCE-E
Confidence            1111111 112899999999999987665   35677776554   22  1    111111 2346889999999997 4


Q ss_pred             EEEee
Q 017194          162 VISGG  166 (375)
Q Consensus       162 l~~~~  166 (375)
                      ++.+.
T Consensus       180 ~V~~~  184 (253)
T PF10647_consen  180 VVLGR  184 (253)
T ss_pred             EEEeC
Confidence            44443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=96.85  E-value=0.35  Score=43.96  Aligned_cols=106  Identities=12%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcCCC------eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCcCce
Q 017194           68 SGNEDIIYVSSGK------EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC  136 (375)
Q Consensus        68 ~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  136 (375)
                      .++..++.|+.++      .+..||..+.+ +..+............+.  -+++.++.|+.+     ..+..||..+.+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKS-WNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCe-eeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3455666666542      57788887643 333333321111222222  256677777754     347778877553


Q ss_pred             e--eeeEecCcccceeEEEEeeCCCcEEEEeecC------CeEEEeeCCCCC
Q 017194          137 L--YKSLRAGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGR  180 (375)
Q Consensus       137 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~  180 (375)
                      -  ...+. ..... .+++. -++. +++.|+.+      ..+..||..+.+
T Consensus       370 W~~~~~lp-~~r~~-~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        370 WREEPPLI-FPRYN-PCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             eeeCCCcC-cCCcc-ceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCe
Confidence            2  11221 11111 11222 2344 67777632      357888887654

>PHA02790 Kelch-like protein; Provisional

Probab=96.84  E-value=0.23  Score=44.27  Aligned_cols=182  Identities=9%  Similarity=-0.068  Sum_probs=88.5

Q ss_pred             CCEEEEeCCCC-----cEEEEecccCceee--EeeecCccEEEEEEeCCCCeEEEEcCC--CeEEEEECCCCCccccccc
Q 017194           28 PGFVASSGEDG-----CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        28 ~~~l~s~~~d~-----~i~iw~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~   98 (375)
                      +.+++.||.++     ++..||..+++-..  .+....... +++ .-++...+.|+.+  ..+..||..++ .+..+..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n-~W~~~~~  348 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDA-AWVNMPS  348 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCC-eEEECCC
Confidence            45667777543     46678877654322  222111111 222 2356666777653  36788887654 2444443


Q ss_pred             ccCCCcceeEEEEcCCCCeEEEEeCCC---cEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194           99 YNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                      +.........+  .-+++..+.|+.++   .+..||.++.+=.  ..+. ...... ++ ..-++. +.+.|+   .+.+
T Consensus       349 l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~-~~-~~~~~~-IYv~GG---~~e~  419 (480)
T PHA02790        349 LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKS-CA-LVFGRR-LFLVGR---NAEF  419 (480)
T ss_pred             CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cccccc-eE-EEECCE-EEEECC---ceEE
Confidence            32111111112  23566777777543   4678887655321  1111 111111 22 223444 566663   5778


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-----CcEEEEeCCCc
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESE  240 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  240 (375)
                      ||.++++-...-...            .+..-.+++..       ++++.++|+.+     ..+..||..++
T Consensus       420 ydp~~~~W~~~~~m~------------~~r~~~~~~v~-------~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        420 YCESSNTWTLIDDPI------------YPRDNPELIIV-------DNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ecCCCCcEeEcCCCC------------CCccccEEEEE-------CCEEEEECCcCCCcccceEEEEECCCC
Confidence            888765433221111            11111223333       57888888754     35777877753

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.67  E-value=0.41  Score=42.25  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=88.8

Q ss_pred             CceeEEEEecCCCCEEEEeC--CCCcEEEEecccCceeeEeeecCccEEEEEEeCC----CCeEEEEcCCCeEEEEECCC
Q 017194           16 ATATCCIASRDRPGFVASSG--EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG----NEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~d~~i~iwd~~~   89 (375)
                      .+|..++|. |+.+.++|.-  .+|.++.=|   ...+    +.-+.|..+.|.|-    ...|++....+.|.||.+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            478888886 3234444432  122222111   1112    23456899999885    34577777789999999862


Q ss_pred             C--CcccccccccCC-----CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC--ceeeeeEecCcccceeEEEEeeCCCc
Q 017194           90 P--ASWRPLESYNYN-----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        90 ~--~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      .  +..+.+.....+     .---..+.|+|....|++-.....-.+++++.  .+....++  -.+.|.|.+|.+||+.
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQR  169 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCE
Confidence            1  111111111000     01124578999988887766554444556553  34444454  5678999999999996


Q ss_pred             EEEEeecCCeEEEeeCCC
Q 017194          161 EVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~  178 (375)
                      +++..+..=.-++||-..
T Consensus       170 LVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEeCCeEEEEEecCch
Confidence            555555555678998543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.67  E-value=0.58  Score=44.00  Aligned_cols=207  Identities=13%  Similarity=0.087  Sum_probs=114.5

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCcc--------EEEEEEeC----------------CCCeEEEEcCCCeEEE
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGP--------VTSLCFKS----------------GNEDIIYVSSGKEVKS   84 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--------v~~l~~~~----------------~~~~l~~~~~d~~i~i   84 (375)
                      ..|+.++.++.|.-.|..+|+.+-.+......        ...+.+..                .+..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            46777788889999999999987776532210        11233321                2347888888999999


Q ss_pred             EECCCCCccccccc-----cc----CCCcceeEEEEcC--CCCeEEEEeC----------CCcEEEEeCcCceeeeeEec
Q 017194           85 FDVHMPASWRPLES-----YN----YNKEEINQIVCNP--KSSFLACADD----------GGDVKIIDIRQHCLYKSLRA  143 (375)
Q Consensus        85 wd~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~  143 (375)
                      .|.++++....+..     +.    .....-..+.-.|  .+..+++|+.          +|.|+-+|.++++.+-.+..
T Consensus       275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            99998876533221     00    0000000111122  1335666642          68899999999998877652


Q ss_pred             Ccc--------c--------ce-eEEEEeeCCCcEEEEee------------------cCCeEEEeeCCCCCcceEEecC
Q 017194          144 GHS--------S--------IC-SSVQFIPWKPWEVISGG------------------LDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       144 ~~~--------~--------~v-~~~~~~~~~~~~l~~~~------------------~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +..        +        .+ ..+++.++.. ++..+.                  ..+.|.-.|.++|+....++..
T Consensus       355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             CCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            110        0        11 2234444433 222211                  2356777788888877777642


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCC---CEEEEEecCCcEEEEeCCCcceeec
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.+.-+   .- ......-+.+..     .++   ..++.++.+|.+.++|.++++.+..
T Consensus       434 ~hD~WD---~D-~~~~p~L~d~~~-----~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       434 HHDLWD---MD-VPAQPSLVDLPD-----ADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CCcccc---cc-ccCCceEEeeec-----CCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            100000   00 000111111111     034   3789999999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.2  Score=45.30  Aligned_cols=186  Identities=10%  Similarity=0.070  Sum_probs=93.5

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc-ccccCCCcceeEEEEcCCCC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL-ESYNYNKEEINQIVCNPKSS  116 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~  116 (375)
                      -.|+|++.. |..+..+.-....+-.+.|+.+.. |+....+|++++|++-.. ..+.. ...+.....|..+.+..+|-
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence            358888864 666555544445888999997664 677788999999998632 22221 11111234566666666663


Q ss_pred             eEEEEeCCCcEEEEeCcCceeeeeEec--CcccceeEEEEeeCCCc--EEEEee-cCCeEEEeeCCCCCcceEEecCCCC
Q 017194          117 FLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPW--EVISGG-LDSKLVMWDFSKGRPNKIVNFGLPE  191 (375)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~--~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~  191 (375)
                      .++  ..+|.+.+-+-.....+..++.  ....+-.+-...+++..  .++-.. ..+ ..++-.... ......+.   
T Consensus       141 avl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~-~~q~~~~~---  213 (829)
T KOG2280|consen  141 AVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES-RVQLHALS---  213 (829)
T ss_pred             EEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc-cccccccC---
Confidence            333  3445555443222212223321  11111122222222211  111111 000 001111110 01111111   


Q ss_pred             CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                              .....+..+.++|      +.++|+--...|.|.+-+....+......
T Consensus       214 --------~~~~~~~ki~VS~------n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  214 --------WPNSSVVKISVSP------NRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             --------CCCceEEEEEEcC------CcceEEEEecCCcEEEEecchhhhhhccC
Confidence                    0125677888988      79999999999999998887655444443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.60  E-value=0.22  Score=38.31  Aligned_cols=136  Identities=8%  Similarity=-0.071  Sum_probs=85.0

Q ss_pred             CccEEEEEEeCCCCeEEEEcC---------CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEE-EeCCCcE
Q 017194           58 NGPVTSLCFKSGNEDIIYVSS---------GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC-ADDGGDV  127 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i  127 (375)
                      +...+.-..+|+|++.+-.-.         .|.++.|-...  ..+.+...   -.--+.++|+.+.+.+.. -+.+-+|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~---v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNC---VGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cceeeehh---ccCCccccccccCcEEEEEccCceEE
Confidence            344556667899988442222         25666666542  12222221   233457889887766554 4556678


Q ss_pred             EEEe--CcCc-----eeeeeEec--C-cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCC
Q 017194          128 KIID--IRQH-----CLYKSLRA--G-HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG  197 (375)
Q Consensus       128 ~iwd--~~~~-----~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  197 (375)
                      .-||  ..++     +.+..++.  . ..-..-.++...+|. ++++.-..++|...|..+|+.+.+++++         
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklP---------  252 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLP---------  252 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcC---------
Confidence            7787  4444     23333331  0 111234566666776 7888888999999999999999999987         


Q ss_pred             cccCCCceeEEeecC
Q 017194          198 QCYNPAFVHAIAIPD  212 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~  212 (375)
                          ...+++.+|--
T Consensus       253 ----t~qitsccFgG  263 (310)
T KOG4499|consen  253 ----TPQITSCCFGG  263 (310)
T ss_pred             ----CCceEEEEecC
Confidence                56899999963

>PRK13684 Ycf48-like protein; Provisional

Probab=96.58  E-value=0.38  Score=40.59  Aligned_cols=154  Identities=12%  Similarity=0.069  Sum_probs=87.2

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEE-EecccCceeeEe-eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICW-FDLRSKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~i-w~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      ...+.++.+.|+ +.+++++. .|.+.. ++ ..++.-..+ ..-...++++.+.++++.++++ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~-g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPD-GKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCC-CeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            356888899887 66666554 454433 22 122211112 2235678999999998866654 467665323444444


Q ss_pred             ccccccccC-CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe--cCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           93 WRPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        93 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      +..+..... ....+..+.+.+++..++++ .+|.+. .....++.-....  ..-......+.|..++.  .+..+..|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~--~~~~G~~G  323 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK--GFVLGQRG  323 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc--eEEECCCc
Confidence            443322101 12457888999887765555 667554 3444444433332  02223577788877665  45566678


Q ss_pred             eEEEeeC
Q 017194          170 KLVMWDF  176 (375)
Q Consensus       170 ~i~~wd~  176 (375)
                      .|..|+-
T Consensus       324 ~il~~~~  330 (334)
T PRK13684        324 VLLRYVG  330 (334)
T ss_pred             eEEEecC
Confidence            8877763

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.52  E-value=0.32  Score=39.13  Aligned_cols=156  Identities=15%  Similarity=0.021  Sum_probs=83.5

Q ss_pred             ceeEEEEeeCCCcEEEEee-cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          148 ICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      .+.+.++++++.. ++... .++.-.+|-...+........+              ..+..-.|++      ++...++.
T Consensus        25 ~~~s~AvS~dg~~-~A~v~~~~~~~~L~~~~~~~~~~~~~~g--------------~~l~~PS~d~------~g~~W~v~   83 (253)
T PF10647_consen   25 DVTSPAVSPDGSR-VAAVSEGDGGRSLYVGPAGGPVRPVLTG--------------GSLTRPSWDP------DGWVWTVD   83 (253)
T ss_pred             cccceEECCCCCe-EEEEEEcCCCCEEEEEcCCCcceeeccC--------------CccccccccC------CCCEEEEE
Confidence            6889999999984 44433 3333334433444444333222              3566677777      67777776


Q ss_pred             ecCCcEEEEe-CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194          227 KGDGVVDVIN-IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  305 (375)
Q Consensus       227 ~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  305 (375)
                      ..+...+++. ...+...                                     ........-...|..+.+|   |||
T Consensus        84 ~~~~~~~~~~~~~~g~~~-------------------------------------~~~v~~~~~~~~I~~l~vS---pDG  123 (253)
T PF10647_consen   84 DGSGGVRVVRDSASGTGE-------------------------------------PVEVDWPGLRGRITALRVS---PDG  123 (253)
T ss_pred             cCCCceEEEEecCCCcce-------------------------------------eEEecccccCCceEEEEEC---CCC
Confidence            6666666663 2221100                                     0000111111289999999   999


Q ss_pred             cEEEEec---CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194          306 KYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  365 (375)
Q Consensus       306 ~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  365 (375)
                      ..+|...   .++.|.+=-+.....-..................+..+.|.+ ++.+++.+..
T Consensus       124 ~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~  185 (253)
T PF10647_consen  124 TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRS  185 (253)
T ss_pred             cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEEeCC
Confidence            8777554   357777775543211100000011112223356889999998 7766665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.45  E-value=0.02  Score=30.82  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=27.7

Q ss_pred             CceeEEEEecCCC--CEEEEeCCCCcEEEEeccc
Q 017194           16 ATATCCIASRDRP--GFVASSGEDGCICWFDLRS   47 (375)
Q Consensus        16 ~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~   47 (375)
                      +.|.+|.|+|..+  ++|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4789999998756  7899888889999999985

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.44  E-value=0.32  Score=41.70  Aligned_cols=143  Identities=11%  Similarity=0.051  Sum_probs=77.2

Q ss_pred             CceeEEEEecCCCCEEEEeC-----------CCC-cEEEEeccc--Cce--eeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194           16 ATATCCIASRDRPGFVASSG-----------EDG-CICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~-----------~d~-~i~iw~~~~--~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      .....|+|.++ |+++++-.           ..+ .|.+++-..  |..  ...+...-.....+++.+++  |++++..
T Consensus        14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            34567899998 77776642           223 677776432  222  23333333456789999888  4444444


Q ss_pred             CeEEEEECCCC-----CcccccccccC----CCcceeEEEEcCCCCeEEEEeCC-------------------CcEEEEe
Q 017194           80 KEVKSFDVHMP-----ASWRPLESYNY----NKEEINQIVCNPKSSFLACADDG-------------------GDVKIID  131 (375)
Q Consensus        80 ~~i~iwd~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~iwd  131 (375)
                      ...++.|....     +....+..+..    +......++|.|||.+.++-+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            33333344321     11112222322    13457789999999776644421                   3455556


Q ss_pred             CcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194          132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      ..+++. ..+..++ .....++|+|+|+ ++++
T Consensus       171 pdg~~~-e~~a~G~-rnp~Gl~~d~~G~-l~~t  200 (367)
T TIGR02604       171 PDGGKL-RVVAHGF-QNPYGHSVDSWGD-VFFC  200 (367)
T ss_pred             cCCCeE-EEEecCc-CCCccceECCCCC-EEEE
Confidence            554433 3333133 3457889999887 5554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.43  E-value=0.84  Score=42.95  Aligned_cols=282  Identities=10%  Similarity=0.027  Sum_probs=147.3

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-------eEeeecCccEEEEEEeCC----CCeEEEEcC---CC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-------LVTDVGNGPVTSLCFKSG----NEDIIYVSS---GK   80 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~~v~~l~~~~~----~~~l~~~~~---d~   80 (375)
                      .+-..|+.+-++  ..|.+|+.-|.=++..+.+....       .++. .-+||..++.-..    +..+++++.   ||
T Consensus       306 ~siassi~~L~n--g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdg  382 (1096)
T KOG1897|consen  306 TSIASSINYLDN--GVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDG  382 (1096)
T ss_pred             cchhhhhhcccC--ceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCC
Confidence            334455555554  47888888777677766543322       2222 2457888776432    345666654   68


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEE--EcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIV--CNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      ++++..-.-+-.......+.+ ...++.+.  +.++ ..+|+.+-. +.-++..+...-...... +.......+..+.-
T Consensus       383 SLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e~ee~~~~-gf~~~~~Tif~S~i  459 (1096)
T KOG1897|consen  383 SLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEEVEETEDP-GFSTDEQTIFCSTI  459 (1096)
T ss_pred             cEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-cceEEEEEccceEEeccc-cccccCceEEEEcc
Confidence            999987543322222233333 34566666  4432 225555543 445555554321111111 23333344444332


Q ss_pred             CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          158 KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       158 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      +...++-... ..|++++-.  .....+..              +..++....+.      +...++.++.++.+...++
T Consensus       460 ~g~~lvQvTs-~~iRl~ss~--~~~~~W~~--------------p~~~ti~~~~~------n~sqVvvA~~~~~l~y~~i  516 (1096)
T KOG1897|consen  460 NGNQLVQVTS-NSIRLVSSA--GLRSEWRP--------------PGKITIGVVSA------NASQVVVAGGGLALFYLEI  516 (1096)
T ss_pred             CCceEEEEec-ccEEEEcch--hhhhcccC--------------CCceEEEEEee------cceEEEEecCccEEEEEEe
Confidence            2213333332 357777744  23333432              23444444443      5667778877777877777


Q ss_pred             CCcceeecccccCCCCCCceeeccc--ccc---eeeeeeeecCCcc-------eeEeeeeecCCCccEEEEEEeecCCCC
Q 017194          238 ESELNISRSKSTTKPLKGSQSTSKV--NIR---DAEMEILDQSGGK-------RLHLDYSVGGHTAAASCVAFSMFGERG  305 (375)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~s~~--g~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~~  305 (375)
                      ................+.++.++|-  ++.   ++.+|.|......       ...+...+.+ ..-.+++-+..+..|.
T Consensus       517 ~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-~~iPRSIl~~~~e~d~  595 (1096)
T KOG1897|consen  517 EDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-EIIPRSILLTTFEGDI  595 (1096)
T ss_pred             eccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-CccchheeeEEeeccc
Confidence            7665444444555566777777754  444   5556666544321       1111111222 2222333333333668


Q ss_pred             cEEEEecCCCeEEEEeCCCce
Q 017194          306 KYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       306 ~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      .+|.++..||.+..|.+....
T Consensus       596 ~yLlvalgdG~l~~fv~d~~t  616 (1096)
T KOG1897|consen  596 HYLLVALGDGALLYFVLDINT  616 (1096)
T ss_pred             eEEEEEcCCceEEEEEEEccc
Confidence            899999999999877665543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.42  E-value=0.38  Score=38.83  Aligned_cols=212  Identities=12%  Similarity=0.126  Sum_probs=120.2

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecc------cC-ceeeEeee-----cCccEEEEEEeCCCC------------eE
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLR------SK-DVQLVTDV-----GNGPVTSLCFKSGNE------------DI   73 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~------~~-~~~~~~~~-----~~~~v~~l~~~~~~~------------~l   73 (375)
                      -+.++++|. +.+-++....+...+||..      .. ..+-.+..     .....+.+.|+....            .+
T Consensus        25 ~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            467899998 6777777777899999986      11 12233331     134567777764332            36


Q ss_pred             EEEcCCCeEEEEECCCCCcc--ccccccc-CCCcc-eeEEEEcC--CCCeEEEEe-CCCcEEEEeCcCceee--eeEec-
Q 017194           74 IYVSSGKEVKSFDVHMPASW--RPLESYN-YNKEE-INQIVCNP--KSSFLACAD-DGGDVKIIDIRQHCLY--KSLRA-  143 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~-v~~~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~--~~~~~-  143 (375)
                      +.++.||+|.-|...-+...  .....+. ..... -..+++..  .+.+|+.+. .+++|.++|-.=.+..  ..+.. 
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            77888999999996432220  1111111 11122 23455543  345555554 6788999985322111  01110 


Q ss_pred             ---C-----------cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          144 ---G-----------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       144 ---~-----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                         .           ..-.|+-..-.++.. -=+.+..-|.|-+||+. ++.++++...-           .-...+.|+
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~-G~l~~r~as~g-----------~LNaPWG~a  250 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN-GQLLRRVASSG-----------RLNAPWGLA  250 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC-CcEEEEeccCC-----------cccCCceee
Confidence               0           000011111111111 12233345789999976 77888775320           123457788


Q ss_pred             ecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      ..|..+-...+.+|+---.||+|..||..+++..
T Consensus       251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             eChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence            8887776677888988889999999999876544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.41  E-value=0.16  Score=43.80  Aligned_cols=140  Identities=15%  Similarity=0.166  Sum_probs=90.3

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC-------eEEEEcCCCeEEEEECCCCC-cccccc--ccc
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-------DIIYVSSGKEVKSFDVHMPA-SWRPLE--SYN  100 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~~~~~d~~i~iwd~~~~~-~~~~~~--~~~  100 (375)
                      +..|+....+.-.|++.|+.+..+..|..-  -+.|.|..+       .-+.|-.+..|.-.|.+-.. .+....  .+.
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~  560 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK  560 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence            445666677888899999999998877655  567777432       23345556666666765322 111111  111


Q ss_pred             CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194          101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS  177 (375)
Q Consensus       101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~  177 (375)
                      . .....+..-.. .-++|+++..|.|++||--..+....+. +....|..+....+|+++|++|  ...+.+-|++
T Consensus       561 t-Kn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         561 T-KNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             c-ccccccccccc-CceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence            1 22233333333 3489999999999999965545555566 7778999999999998555554  4578888875

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.37  E-value=0.38  Score=39.50  Aligned_cols=175  Identities=10%  Similarity=0.102  Sum_probs=89.2

Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeeccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSK  247 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  247 (375)
                      -+|.+||+.+++.++++.++...       ......+..+.+..... ..+..++..+. ..+.|.++|+.+++......
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~-------~~~~s~lndl~VD~~~~-~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~  105 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDI-------APPDSFLNDLVVDVRDG-NCDDGFAYITDSGGPGLIVYDLATGKSWRVLH  105 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCC-------S-TCGGEEEEEEECTTT-TS-SEEEEEEETTTCEEEEEETTTTEEEEEET
T ss_pred             cEEEEEECCCCcEEEEEECChHH-------cccccccceEEEEccCC-CCcceEEEEeCCCcCcEEEEEccCCcEEEEec
Confidence            37889999999999998876211       11345677787765200 00113444444 44689999999876655443


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                      ...........+.-.|..                  ...   ...+..++.+|..+++++|.-....+ -++|.+++...
T Consensus       106 ~~~~~~p~~~~~~i~g~~------------------~~~---~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L  163 (287)
T PF03022_consen  106 NSFSPDPDAGPFTIGGES------------------FQW---PDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVL  163 (287)
T ss_dssp             CGCTTS-SSEEEEETTEE------------------EEE---TTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHH
T ss_pred             CCcceeccccceeccCce------------------Eec---CCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHh
Confidence            322222111122222211                  112   23388888886556777777554432 24444443211


Q ss_pred             eeecchhhh--hh--hhcccc-cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          328 VQTSINNDL--LI--KNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       328 ~~~~~~~~~--~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .........  ..  ...+.. .....+++.+ +|..+++--..+.|..|+.
T Consensus       164 ~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~  214 (287)
T PF03022_consen  164 RDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDP  214 (287)
T ss_dssp             CSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEET
T ss_pred             hCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeC
Confidence            100000011  11  111222 3556677777 8888888778889999985

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PHA02790 Kelch-like protein; Provisional

Probab=96.37  E-value=0.69  Score=41.32  Aligned_cols=105  Identities=10%  Similarity=-0.012  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCC-----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC--CcEEEEeCcCcee--ee
Q 017194           69 GNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG--GDVKIIDIRQHCL--YK  139 (375)
Q Consensus        69 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~--~~  139 (375)
                      ++..++.|+.+     ..+..||..+++ +..+............+  .-++...+.|+.+  ..+..||..+++-  +.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~-W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNN-WIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCE-EEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            34555666654     257778887643 33333332111112222  2366677777653  3578888765432  22


Q ss_pred             eEecCcccceeEEEEeeCCCcEEEEeecCC---eEEEeeCCCCC
Q 017194          140 SLRAGHSSICSSVQFIPWKPWEVISGGLDS---KLVMWDFSKGR  180 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~  180 (375)
                      .+. ...... +++ .-++. +.+.|+.++   .+..||.++.+
T Consensus       348 ~l~-~~r~~~-~~~-~~~g~-IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        348 SLL-KPRCNP-AVA-SINNV-IYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             CCC-CCCccc-EEE-EECCE-EEEecCcCCCCccEEEEeCCCCE
Confidence            222 111111 122 22444 677777553   46678876554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.30  E-value=0.44  Score=43.21  Aligned_cols=125  Identities=13%  Similarity=0.081  Sum_probs=73.8

Q ss_pred             eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec
Q 017194          149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  228 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  228 (375)
                      +.-+.-+.-++ ..++-+...++.|||.+.+.......+.            ....|..+.|..    .++++.+++-+.
T Consensus        32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~------------~~~~I~dLDWts----t~d~qsiLaVGf   94 (631)
T PF12234_consen   32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFS------------EDDPIRDLDWTS----TPDGQSILAVGF   94 (631)
T ss_pred             cceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeec------------CCCceeeceeee----cCCCCEEEEEEc
Confidence            33344444444 3344444557999999988755554443            357899999986    557888888888


Q ss_pred             CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC-ccEEEEEEeecCCCCcE
Q 017194          229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKY  307 (375)
Q Consensus       229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~  307 (375)
                      .+.|.+|.-......  ...+.                          -...+.+ .+..|+ .+|.+..|.   ++|.+
T Consensus        95 ~~~v~l~~Q~R~dy~--~~~p~--------------------------w~~i~~i-~i~~~T~h~Igds~Wl---~~G~L  142 (631)
T PF12234_consen   95 PHHVLLYTQLRYDYT--NKGPS--------------------------WAPIRKI-DISSHTPHPIGDSIWL---KDGTL  142 (631)
T ss_pred             CcEEEEEEccchhhh--cCCcc--------------------------cceeEEE-EeecCCCCCccceeEe---cCCeE
Confidence            889999865321000  00000                          0001111 122333 578999999   88866


Q ss_pred             EEEecCCCeEEEEeCCC
Q 017194          308 LISGGNDKLVKVWDCSR  324 (375)
Q Consensus       308 l~s~~~dg~i~iwd~~~  324 (375)
                      ++.++  +.+.|+|-.-
T Consensus       143 vV~sG--Nqlfv~dk~~  157 (631)
T PF12234_consen  143 VVGSG--NQLFVFDKWL  157 (631)
T ss_pred             EEEeC--CEEEEECCCc
Confidence            66554  5688887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.093  Score=49.61  Aligned_cols=116  Identities=12%  Similarity=0.048  Sum_probs=77.4

Q ss_pred             cceeEEEEcCCCCeEEEE--eCCCcEEEEeCcCcee-----eeeEe---c--CcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194          104 EEINQIVCNPKSSFLACA--DDGGDVKIIDIRQHCL-----YKSLR---A--GHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~-----~~~~~---~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                      -++..+...+|+...++.  +.+-.|..||+++...     ...|.   .  .......++.|.|.=....+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456677777887664433  3444789999975322     11111   0  1223456788888766567788889999


Q ss_pred             EEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          172 VMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       172 ~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ++..+.... ....+..              ....++++|+|      .|+.+++|...|++.-|...-
T Consensus       181 ~V~~~~~~~~~v~s~p~--------------t~~~Tav~WSp------rGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPV--------------TNSQTAVLWSP------RGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhhcccCc--------------ccceeeEEecc------ccceeeEecCCCeEEEeeccc
Confidence            988776432 2222232              35789999999      799999999999999887664

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.59  Score=39.91  Aligned_cols=106  Identities=16%  Similarity=0.182  Sum_probs=73.3

Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                      ..+.|.++.|++      |.+.+|+--.+++|.+++....+..                                    .
T Consensus        65 d~G~I~SIkFSl------DnkilAVQR~~~~v~f~nf~~d~~~------------------------------------l  102 (657)
T KOG2377|consen   65 DKGEIKSIKFSL------DNKILAVQRTSKTVDFCNFIPDNSQ------------------------------------L  102 (657)
T ss_pred             CCCceeEEEecc------CcceEEEEecCceEEEEecCCCchh------------------------------------h
Confidence            457899999999      8999999999999999988532111                                    1


Q ss_pred             EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcE
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL  360 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  360 (375)
                      ....+-+.....|....|+    +..-+|-....| +-+|-....+        +.++....|+-.|.+..|.+ +-+.+
T Consensus       103 ~~~~~ck~k~~~IlGF~W~----~s~e~A~i~~~G-~e~y~v~pek--------rslRlVks~~~nvnWy~yc~-et~v~  168 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWT----SSTEIAFITDQG-IEFYQVLPEK--------RSLRLVKSHNLNVNWYMYCP-ETAVI  168 (657)
T ss_pred             HHHHHhccCcceeEEEEEe----cCeeEEEEecCC-eEEEEEchhh--------hhhhhhhhcccCccEEEEcc-ccceE
Confidence            1112223335568888897    345666665544 7777766654        55667778889999999998 55544


Q ss_pred             EE
Q 017194          361 VV  362 (375)
Q Consensus       361 ~s  362 (375)
                      +-
T Consensus       169 LL  170 (657)
T KOG2377|consen  169 LL  170 (657)
T ss_pred             ee
Confidence            33

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.21  E-value=0.25  Score=43.49  Aligned_cols=150  Identities=13%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             ccEEEEEEeCCCCeEEEEc---CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC----CCeEEEEeCCCcEEEEe
Q 017194           59 GPVTSLCFKSGNEDIIYVS---SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK----SSFLACADDGGDVKIID  131 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd  131 (375)
                      .++..++|. ||+.++-..   .+|.+++=|.      ..+..+    ..|..+.|.|-    ...+++......|.+|.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            578889996 555544332   1333333221      223332    46889999984    33455555778999999


Q ss_pred             Cc-----CceeeeeEecCc--cc--ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC
Q 017194          132 IR-----QHCLYKSLRAGH--SS--ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP  202 (375)
Q Consensus       132 ~~-----~~~~~~~~~~~~--~~--~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (375)
                      +.     +.+.+..-....  .-  -...+.|+|... +|++-.....-.+++++...........            ..
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~------------~~  155 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIK------------TS  155 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEecc------------CC
Confidence            86     222221111001  11  124678999988 6666555555556776654443333333            46


Q ss_pred             CceeEEeecCCccccCCCCEEEEEecC-CcEEEEeCC
Q 017194          203 AFVHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIE  238 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~  238 (375)
                      +.|++.+|.+      ||+.|+++-.. =.-++||-.
T Consensus       156 G~IhCACWT~------DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  156 GLIHCACWTK------DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceEEEEEecC------cCCEEEEEeCCeEEEEEecCc
Confidence            8999999999      78888776543 345677754

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.14  Score=48.54  Aligned_cols=141  Identities=17%  Similarity=0.104  Sum_probs=85.8

Q ss_pred             ccEEEEEEeCCCCeEEEE--cCCCeEEEEECCCCCcc-----ccccc---ccCCCcceeEEEEcCCCC-eEEEEeCCCcE
Q 017194           59 GPVTSLCFKSGNEDIIYV--SSGKEVKSFDVHMPASW-----RPLES---YNYNKEEINQIVCNPKSS-FLACADDGGDV  127 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~-----~~~~~---~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i  127 (375)
                      -++..+...+|+...++.  +.+-.|..||+++-...     .++..   .........++.|+|.-. ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456666667776654443  33348899998752211     11111   111123456778888532 35666788999


Q ss_pred             EEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          128 KIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       128 ~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      ++..+... ..+..+.  .....++++|+|.|+ .++.|-..|++.-|-.. .+....+.  .|+..       ....|.
T Consensus       181 ~V~~~~~~~~~v~s~p--~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~-leik~~ip--~Pp~~-------e~yrvl  247 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP--VTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPS-LEIKSEIP--EPPVE-------ENYRVL  247 (1405)
T ss_pred             hhhhhhhhhhhhcccC--cccceeeEEeccccc-eeeEecCCCeEEEeecc-cceeeccc--CCCcC-------CCccee
Confidence            88877533 2333443  566789999999999 69999999999988754 33222222  11111       146788


Q ss_pred             EEeecC
Q 017194          207 AIAIPD  212 (375)
Q Consensus       207 ~~~~~~  212 (375)
                      +|.|..
T Consensus       248 ~v~Wl~  253 (1405)
T KOG3630|consen  248 SVTWLS  253 (1405)
T ss_pred             EEEEec
Confidence            999976

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.08  E-value=0.25  Score=44.75  Aligned_cols=109  Identities=13%  Similarity=0.206  Sum_probs=70.2

Q ss_pred             EEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEe--CCCCeEEEEcCCCeEEEEECC------CCC
Q 017194           21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFK--SGNEDIIYVSSGKEVKSFDVH------MPA   91 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~--~~~~~l~~~~~d~~i~iwd~~------~~~   91 (375)
                      +.-+.. ++..++-+....+.|||...+.....-. ...+.|.++.|.  |+++.+++.+..+.|.++.-.      .+.
T Consensus        35 i~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             Eeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            333443 4444444445689999998776433222 347899999995  789999999999999998642      111


Q ss_pred             cccccccc--cCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194           92 SWRPLESY--NYN-KEEINQIVCNPKSSFLACADDGGDVKIIDI  132 (375)
Q Consensus        92 ~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (375)
                      .+..++.+  ..+ ..+|.+..|.++|.+++.++  +.+.|+|-
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            22222222  112 35799999999996655443  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.05  E-value=0.0011  Score=55.79  Aligned_cols=147  Identities=12%  Similarity=0.126  Sum_probs=101.1

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCccccccc
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      ...|-|.+++ ++.++.+..+..||-. ++....+. .++....++|..++..++. +-..+.+.+||+.+... +.+..
T Consensus        39 ~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~  114 (615)
T KOG2247|consen   39 IHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLES  114 (615)
T ss_pred             eeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhc
Confidence            3578888444 7778888888888844 44333333 2455667888888776544 45568999999985322 22222


Q ss_pred             ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194           99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD  175 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd  175 (375)
                      -..|...  -+.|++....++.+...|.+.+++-.+.+.+...- .|...+.++++.+.+  +.+.++.|..+.+-.
T Consensus       115 gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd--~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  115 GGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLED--YVILCDCDNTLSVTT  186 (615)
T ss_pred             cCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccc--eeeecCcHHHHHHhh
Confidence            1112222  27789988889999899999999987766655554 599999999999987  577777776655443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.85  Score=44.35  Aligned_cols=153  Identities=8%  Similarity=0.044  Sum_probs=94.3

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEe--------CCCCeEEEEcCCCeEEEEECCCCC
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK--------SGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~--------~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      .|-+.|.-++.-+|  -|..+.+|+.+++.....+.+-...|..+..-        |.=++++..+.--.|.++-+.-.+
T Consensus        83 ~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            34444543444444  46789999999988777777766677776542        333455555656677777654322


Q ss_pred             ccccccccc------CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc----Cc---e-e-------------e---eeE
Q 017194           92 SWRPLESYN------YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR----QH---C-L-------------Y---KSL  141 (375)
Q Consensus        92 ~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~---~-~-------------~---~~~  141 (375)
                      .......+.      .....|+++....+|+.+++| .||.|  |.+.    .+   + +             +   -.+
T Consensus       161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~l--yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~  237 (1311)
T KOG1900|consen  161 FTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNL--YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV  237 (1311)
T ss_pred             ccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCE--EEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence            211111111      114568888888888777766 56644  4332    11   1 0             0   011


Q ss_pred             ecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          142 RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      ...+..+|..++...... ++.+-++.|+|.+||+..
T Consensus       238 ~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  238 PGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCCcceeeEeccccc-eeeeeccCceEEEEEccC
Confidence            114567899999887766 899999999999999986

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.92  E-value=0.66  Score=42.22  Aligned_cols=177  Identities=12%  Similarity=0.035  Sum_probs=91.8

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE--e--eecCccEEEEEEeCCCCeEEEEcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--T--DVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~--~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      +|..+.++-...+.+..+.|+.+  ..|++-..+|++.+|++- |+.+..  .  ......|..+.+..+|-.++  ..+
T Consensus        72 sG~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~  146 (829)
T KOG2280|consen   72 SGQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVL--TVS  146 (829)
T ss_pred             cccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEE--ecC
Confidence            44555555444457888999976  567778899999999976 333322  1  22234466666665664333  334


Q ss_pred             CeEE-EEECCCCCcccccccccCCCcceeEEEEcCCCC---eEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEE
Q 017194           80 KEVK-SFDVHMPASWRPLESYNYNKEEINQIVCNPKSS---FLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        80 ~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~  154 (375)
                      |.+. +-+.+... .......+...-+-.|-...+++.   .++-....--..++..+.. .....+. .....+..+..
T Consensus       147 g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~-~~~~~~~ki~V  224 (829)
T KOG2280|consen  147 GQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALS-WPNSSVVKISV  224 (829)
T ss_pred             CcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccC-CCCceEEEEEE
Confidence            4444 33443221 122222222122222222222221   1111110000112222211 1112222 22356778889


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +|+.+ +|+--...|.|.+-+....+....+...
T Consensus       225 S~n~~-~laLyt~~G~i~~vs~D~~~~lce~~~~  257 (829)
T KOG2280|consen  225 SPNRR-FLALYTETGKIWVVSIDLSQILCEFNCT  257 (829)
T ss_pred             cCCcc-eEEEEecCCcEEEEecchhhhhhccCCC
Confidence            99988 7888899999999998877777777644

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.86  E-value=0.36  Score=41.78  Aligned_cols=53  Identities=8%  Similarity=0.135  Sum_probs=41.6

Q ss_pred             CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC
Q 017194          304 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       304 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                      ...|+|+++..|.|++||--..         ..-..+.+....|..+..+. +|+++++.+..
T Consensus       572 esGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta-~Gk~ilaTCk~  624 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTA-NGKHILATCKN  624 (776)
T ss_pred             cCceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeec-CCcEEEEeecc
Confidence            3459999999999999997664         44456777888999999988 88887766543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.86  E-value=0.014  Score=53.33  Aligned_cols=165  Identities=12%  Similarity=0.133  Sum_probs=96.7

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc--cCceeeEeee-----cCccEEEEEEeC---CCCeEEEEcCCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDV-----GNGPVTSLCFKS---GNEDIIYVSSGK   80 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~-----~~~~v~~l~~~~---~~~~l~~~~~d~   80 (375)
                      ++|..+.|-.++|-..+-..++  -.-|.+.+|++.  .|+....+..     ....+.-+.|.|   +.-++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            4677888888888554333333  333678899875  3444333322     234445556654   555666666778


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEE-----------EEcCCCCeEEEEeCCCcEEEEeCc-----CceeeeeEecC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQI-----------VCNPKSSFLACADDGGDVKIIDIR-----QHCLYKSLRAG  144 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~  144 (375)
                      .+++..+.+...    ..+.+|...+..+           ..+|||..++.++.||.++.|.+.     ...++..++ .
T Consensus       206 ~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-p  280 (1283)
T KOG1916|consen  206 EIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-P  280 (1283)
T ss_pred             ceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC-C
Confidence            888877764221    2333355444433           368999999999999998888764     234455666 6


Q ss_pred             ccc-ceeEEEEeeCCC-------c-EEEEee-cCCeEEEeeCCCCCcc
Q 017194          145 HSS-ICSSVQFIPWKP-------W-EVISGG-LDSKLVMWDFSKGRPN  182 (375)
Q Consensus       145 ~~~-~v~~~~~~~~~~-------~-~l~~~~-~d~~i~~wd~~~~~~~  182 (375)
                      |.+ +-.|..++.+..       + ++++++ .+..+++|.....+++
T Consensus       281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            663 222322333211       1 334433 3556888987766665

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.66  E-value=0.84  Score=36.28  Aligned_cols=200  Identities=11%  Similarity=0.015  Sum_probs=120.9

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE   97 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   97 (375)
                      -..++-.|| |..-.++...+.|--.|..+|+....--+....-..+..-|||..-++-+.. -|.-.|-++.+..+..-
T Consensus        64 p~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          64 PFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             ccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            455677777 7777888877888888888888765555555666777888888765554332 55555655433211111


Q ss_pred             cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194           98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS  177 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~  177 (375)
                      ..+..........|.+.|++-+++. .|.---.|.. ...++.+........+.|+..|+|. +.++.-.+..|-..|..
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~  218 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPF  218 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccc
Confidence            1222345678889999998888875 2322222322 2234445433445668899999998 67776677778888877


Q ss_pred             CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          178 KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ++. -..+...  +..        ......+-.+|      -++.-++-...+.+..||...
T Consensus       219 ~~~-aev~p~P--~~~--------~~gsRriwsdp------ig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         219 AGH-AEVVPQP--NAL--------KAGSRRIWSDP------IGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cCC-cceecCC--Ccc--------cccccccccCc------cCcEEEeccCCceeeEeCccc
Confidence            663 2233211  100        01122333333      577777766777888887765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.62  E-value=0.78  Score=39.38  Aligned_cols=105  Identities=9%  Similarity=0.031  Sum_probs=54.9

Q ss_pred             ccEEEEEEeCCCCeEEEEc-----------CCC-eEEEEECCCCC-cccccccccCCCcceeEEEEcCCCCeEEEEeCCC
Q 017194           59 GPVTSLCFKSGNEDIIYVS-----------SGK-EVKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG  125 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~-----------~d~-~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  125 (375)
                      .....|+|.++|+.+++-.           ..+ .|.+++-.++. .......+.........+++.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3456788888888666542           123 67777643321 122222222223346788998888  44444444


Q ss_pred             cEEEEeCcCc-----e---eeeeEecC---cccceeEEEEeeCCCcEEEEee
Q 017194          126 DVKIIDIRQH-----C---LYKSLRAG---HSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       126 ~i~iwd~~~~-----~---~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ..++.|....     +   .+..+...   +......++|.|+|. +.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence            3334454311     1   12223211   234577899999997 555443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.50  E-value=1.3  Score=37.37  Aligned_cols=103  Identities=11%  Similarity=0.135  Sum_probs=54.2

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCce---eeEe----eecCccEEEEEEeCC----CCeEEEEcCC-------
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---QLVT----DVGNGPVTSLCFKSG----NEDIIYVSSG-------   79 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---~~~~----~~~~~~v~~l~~~~~----~~~l~~~~~d-------   79 (375)
                      -+.|+|.|+ ++++++ ...|.|++++ ..+..   +..+    .........++++|+    +...++.+..       
T Consensus         4 P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            467999999 777775 4589999999 33433   2222    123567889999994    3333333311       


Q ss_pred             -CeEEEEECCCC-Cc---c-ccccccc---CCCcceeEEEEcCCCCeEEEEeC
Q 017194           80 -KEVKSFDVHMP-AS---W-RPLESYN---YNKEEINQIVCNPKSSFLACADD  123 (375)
Q Consensus        80 -~~i~iwd~~~~-~~---~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~  123 (375)
                       ..|.-|....+ ..   . ..+....   .....-..+.|.||+.+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             24444544332 00   1 1111111   12234566999999966665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.44  E-value=1.4  Score=37.24  Aligned_cols=82  Identities=13%  Similarity=0.084  Sum_probs=47.7

Q ss_pred             eeeeecCCCccEEEEEEee---c-CCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCC
Q 017194          282 LDYSVGGHTAAASCVAFSM---F-GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES  357 (375)
Q Consensus       282 ~~~~~~~~~~~v~~~~~s~---~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  357 (375)
                      ....+..| ..+..+.|-+   | .-.|.++++.-..+.|....++......     +....+.....++..+++.| ||
T Consensus       245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~r~~~v~~~p-DG  317 (331)
T PF07995_consen  245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT-----EEEEFLGGFGGRPRDVAQGP-DG  317 (331)
T ss_dssp             -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE-----EEEEECTTSSS-EEEEEEET-TS
T ss_pred             cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc-----ceEEccccCCCCceEEEEcC-CC
Confidence            44455555 4556666641   0 0145677777767788888876442211     11111234555899999999 99


Q ss_pred             CcEEEeeCCCeEE
Q 017194          358 ENLVVCDTSKVVK  370 (375)
Q Consensus       358 ~~l~s~~~dg~v~  370 (375)
                      .++++.+.+|.|+
T Consensus       318 ~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  318 ALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEEE-TTTTEE
T ss_pred             eEEEEECCCCeEe
Confidence            9888888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK10115 protease 2; Provisional

Probab=95.34  E-value=2.5  Score=39.69  Aligned_cols=110  Identities=12%  Similarity=0.072  Sum_probs=65.6

Q ss_pred             eeEEEEecCCCCEEEEeCC-----CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC------CeEEEEE
Q 017194           18 ATCCIASRDRPGFVASSGE-----DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFD   86 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------~~i~iwd   86 (375)
                      +..+.++|+ +++|+.+..     ...|++.|+.+++.+...-... . ..++|.+|++.|+....+      ..|+.++
T Consensus       129 l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        129 LGGMAITPD-NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EeEEEECCC-CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            667789998 777775532     2368899998886432221111 1 469999999877776542      3688888


Q ss_pred             CCCCCc-ccccccccCCCccee-EEEEcCCCCeEEEEe---CCCcEEEEeC
Q 017194           87 VHMPAS-WRPLESYNYNKEEIN-QIVCNPKSSFLACAD---DGGDVKIIDI  132 (375)
Q Consensus        87 ~~~~~~-~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~dg~i~iwd~  132 (375)
                      +.++.. ...+..  ....... ....+.++++++..+   .++.+.+++.
T Consensus       206 lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            887632 112221  1122222 334455787766544   3457888885

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.29  E-value=0.13  Score=27.76  Aligned_cols=33  Identities=9%  Similarity=0.016  Sum_probs=26.7

Q ss_pred             cceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCC
Q 017194          147 SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKG  179 (375)
Q Consensus       147 ~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~  179 (375)
                      +.++++.|+|...  .+|+.+-..|.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3688999997543  47888888899999999963

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.29  E-value=2.4  Score=39.19  Aligned_cols=117  Identities=16%  Similarity=0.155  Sum_probs=73.1

Q ss_pred             ceeEEEEcC--CCCeEEEEeCCCcEEEEeCcC-------c----e---------eeeeEecCcccceeEEEEe--eCCCc
Q 017194          105 EINQIVCNP--KSSFLACADDGGDVKIIDIRQ-------H----C---------LYKSLRAGHSSICSSVQFI--PWKPW  160 (375)
Q Consensus       105 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~-------~----~---------~~~~~~~~~~~~v~~~~~~--~~~~~  160 (375)
                      .|+.+....  ....|+.+.+||.|.+|.+++       .    +         +...+.  ....+++++++  ...+ 
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~r-  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSR-  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcce-
Confidence            355554433  445788999999999997641       0    0         111222  34578999998  6655 


Q ss_pred             EEEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEecCCcEEEEeC
Q 017194          161 EVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINI  237 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~  237 (375)
                      ++|+++....|.+|-....  +....-...            +...|.+|.|-+... +++|. .+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~------------~~hNIP~VSFl~~~~-d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQ------------HSHNIPNVSFLDDDL-DPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccc------------cccCCCeeEeecCCC-CCccceEEEEEeccCcEEEEEE
Confidence            7888887777877765432  111110101            456789999988522 11232 7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.25  E-value=2.8  Score=39.70  Aligned_cols=118  Identities=10%  Similarity=0.103  Sum_probs=71.7

Q ss_pred             CCeEEEEcCCCeEEEEECCCCCcccccccccCCC-----cceeEEEEc----------------CCCCeEEEEeCCCcEE
Q 017194           70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-----EEINQIVCN----------------PKSSFLACADDGGDVK  128 (375)
Q Consensus        70 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~----------------~~~~~l~~~~~dg~i~  128 (375)
                      +..|+.++.++.|.-.|.++++..-.........     .....+.+.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            4567777778888888888876543322111000     011222221                1234788888999999


Q ss_pred             EEeCcCceeeeeEecCccccee-------------EEEEee--CCCcEEEEeec----------CCeEEEeeCCCCCcce
Q 017194          129 IIDIRQHCLYKSLRAGHSSICS-------------SVQFIP--WKPWEVISGGL----------DSKLVMWDFSKGRPNK  183 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~l~~~~~----------d~~i~~wd~~~~~~~~  183 (375)
                      -.|.++++.+..+.  ..+.|.             .+.-.|  .+. .+++|+.          +|.|+-+|.++|+.+.
T Consensus       274 ALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999999887664  222110             011111  122 4666643          6889999999999999


Q ss_pred             EEecCCC
Q 017194          184 IVNFGLP  190 (375)
Q Consensus       184 ~~~~~~~  190 (375)
                      .+....|
T Consensus       351 ~~~~g~p  357 (764)
T TIGR03074       351 AWDPGNP  357 (764)
T ss_pred             EEecCCC
Confidence            9886533

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.14  E-value=0.23  Score=38.79  Aligned_cols=70  Identities=19%  Similarity=0.195  Sum_probs=48.4

Q ss_pred             CCCcEEEEecCCCeEEEEeCCCceeeeec-chhhhhhhhc----ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          303 ERGKYLISGGNDKLVKVWDCSRFQGVQTS-INNDLLIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       303 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .++++|++.+.+|.+++||+.+.+..... .-.+++....    .....|..+.++. +|.-|++-+ +|..+.|+.
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence            46789999999999999999998765332 1122221111    4556788888886 887777665 467788874

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.08  E-value=0.49  Score=40.73  Aligned_cols=85  Identities=22%  Similarity=0.338  Sum_probs=60.6

Q ss_pred             CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc-eeEEEEeeC-----------------CCcEEEE
Q 017194          103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-CSSVQFIPW-----------------KPWEVIS  164 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~-----------------~~~~l~~  164 (375)
                      ...+.+++.+|.+++.++...-|.|.++|+.++..++.++ +..+. +.-+.....                 ..++++-
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4567889999999999998888999999999998888887 55432 111111111                 0113445


Q ss_pred             eecCCeEEEeeCCCCCcceEEecC
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +-.-|.|.+|+++.|..+..+..+
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEEeC
Confidence            667899999999999888877654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.03  E-value=0.0029  Score=53.47  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=78.6

Q ss_pred             eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194          106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  185 (375)
                      .....|-+.+.-++.++.+..+..||- .++......  ..+....++|..+++..++.+-..+.+.+||+.+.. ..++
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL  112 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL  112 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH
Confidence            344567787777888888888999994 344444443  456677889998888666777788999999998543 2333


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      +.+            ....-.-+.|++      ....++.+...|.+.+++..+.
T Consensus       113 E~g------------g~~s~sll~wsK------g~~el~ig~~~gn~viynhgts  149 (615)
T KOG2247|consen  113 ESG------------GTSSKSLLAWSK------GTPELVIGNNAGNIVIYNHGTS  149 (615)
T ss_pred             hcc------------CcchHHHHhhcc------CCccccccccccceEEEeccch
Confidence            322            011112256766      5788888889999999998874

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.96  E-value=1.9  Score=36.26  Aligned_cols=65  Identities=9%  Similarity=0.093  Sum_probs=31.7

Q ss_pred             CCCeEEEEeCC-----CcEEEEeCcCcee---eeeEecCcccce--eEEEEeeCCCcEEEEeec-----CCeEEEeeCCC
Q 017194          114 KSSFLACADDG-----GDVKIIDIRQHCL---YKSLRAGHSSIC--SSVQFIPWKPWEVISGGL-----DSKLVMWDFSK  178 (375)
Q Consensus       114 ~~~~l~~~~~d-----g~i~iwd~~~~~~---~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~  178 (375)
                      ++..++.|+.+     ..+..+|+.+.+-   ...+. ....+.  .+++. -++. +++.|+.     ...+..||+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~-~~~~-iYv~GG~~~~~~~~~v~~yd~~~  148 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NLPFTFENGSACY-KDGT-LYVGGGNRNGKPSNKSYLFNLET  148 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEE-ECCE-EEEEeCcCCCccCceEEEEcCCC
Confidence            45566666643     3566777765542   11221 111111  12222 2344 6666664     23577888776


Q ss_pred             CCc
Q 017194          179 GRP  181 (375)
Q Consensus       179 ~~~  181 (375)
                      .+-
T Consensus       149 ~~W  151 (323)
T TIGR03548       149 QEW  151 (323)
T ss_pred             CCe
Confidence            543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.77  E-value=0.7  Score=42.49  Aligned_cols=115  Identities=13%  Similarity=0.051  Sum_probs=74.0

Q ss_pred             ceeEEEEecC-CCCEEEEeCCCCcEEEEeccc-------C----c---------eeeEeeecCccEEEEEEe--CCCCeE
Q 017194           17 TATCCIASRD-RPGFVASSGEDGCICWFDLRS-------K----D---------VQLVTDVGNGPVTSLCFK--SGNEDI   73 (375)
Q Consensus        17 ~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~-------~----~---------~~~~~~~~~~~v~~l~~~--~~~~~l   73 (375)
                      .|+-|....- +.+.|+.+..||.|.+|.+++       .    +         +...+. -....+.++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            4555544322 246789999999999997631       1    0         111222 25688999998  777788


Q ss_pred             EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC---C---eEEEEeCCCcEEEEeC
Q 017194           74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS---S---FLACADDGGDVKIIDI  132 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~iwd~  132 (375)
                      |+++....|.||-............-..+...|.+++|.++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888877888887655321111111111245678899998743   2   6888889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.75  E-value=0.062  Score=49.44  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeee-----------cCCCCC
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT-----------TPTESE  358 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~  358 (375)
                      ...+.-+.|.|+-++.-++..+-.++.|++-+++..          ....+.+|+..++.++|           +| ||.
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGt  248 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGT  248 (1283)
T ss_pred             CCCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHhcCCCcccHHHHhhchhhheeeCC-CCc
Confidence            445677788877677788888888999999888874          23455668877766654           55 999


Q ss_pred             cEEEeeCCCeEEEEec
Q 017194          359 NLVVCDTSKVVKVYSI  374 (375)
Q Consensus       359 ~l~s~~~dg~v~iw~~  374 (375)
                      .++.+..||.+++|.+
T Consensus       249 v~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  249 VFAWAISDGSVGFYQI  264 (1283)
T ss_pred             EEEEeecCCccceeee
Confidence            9999999999999975

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.67  E-value=1  Score=31.60  Aligned_cols=72  Identities=11%  Similarity=0.122  Sum_probs=48.2

Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCC--------CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKG--------RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                      -.|....+ .|+.++.-|+|.+++....        ..+..+.+.              ..|++|+-.+..- +.+...|
T Consensus         4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--------------~~italaaG~l~~-~~~~D~L   67 (136)
T PF14781_consen    4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--------------QEITALAAGRLKP-DDGRDCL   67 (136)
T ss_pred             EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECC--------------CceEEEEEEecCC-CCCcCEE
Confidence            35666666 6888889999999987633        344455543              5677776655211 2245677


Q ss_pred             EEEecCCcEEEEeCCCc
Q 017194          224 VVAKGDGVVDVINIESE  240 (375)
Q Consensus       224 ~~~~~dg~i~i~d~~~~  240 (375)
                      +.|+.. .|..||....
T Consensus        68 liGt~t-~llaYDV~~N   83 (136)
T PF14781_consen   68 LIGTQT-SLLAYDVENN   83 (136)
T ss_pred             EEeccc-eEEEEEcccC
Confidence            777765 7999999864

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.47  E-value=1.1  Score=31.35  Aligned_cols=112  Identities=19%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCcCc--------eeeeeEecCcccceeEEEEeeC----CCcEEEEeecCCeEEEeeC
Q 017194          109 IVCNPKSSFLACADDGGDVKIIDIRQH--------CLYKSLRAGHSSICSSVQFIPW----KPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus       109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~wd~  176 (375)
                      -.|......|++++.-|.|.|++....        ..++.+.  -...|++++-.+-    +...|+.|+ ...+..||+
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            356666667888888999999987633        2344554  5567888865542    223566665 457999999


Q ss_pred             CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      .....+..-+.              +..++++.+-..  -+....++++ +.+..|.-||....
T Consensus        81 ~~N~d~Fyke~--------------~DGvn~i~~g~~--~~~~~~l~iv-GGncsi~Gfd~~G~  127 (136)
T PF14781_consen   81 ENNSDLFYKEV--------------PDGVNAIVIGKL--GDIPSPLVIV-GGNCSIQGFDYEGN  127 (136)
T ss_pred             ccCchhhhhhC--------------ccceeEEEEEec--CCCCCcEEEE-CceEEEEEeCCCCc
Confidence            88776655443              366777777432  1112344444 45567777777653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.41  E-value=0.51  Score=36.89  Aligned_cols=67  Identities=9%  Similarity=0.091  Sum_probs=44.9

Q ss_pred             EeCCCCeEEEEcCCCeEEEEECCCCCccccc----cccc-------CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc
Q 017194           66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPL----ESYN-------YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR  133 (375)
Q Consensus        66 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  133 (375)
                      +..++++|++.+.+|.+++||+.+.+....-    ..+.       .....|..+.++.+|.-+++- .+|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence            4456888999999999999999986543221    1111       234567777777777666554 34677788764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10115 protease 2; Provisional

Probab=94.21  E-value=5  Score=37.80  Aligned_cols=113  Identities=12%  Similarity=-0.013  Sum_probs=66.5

Q ss_pred             ccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC------CcE
Q 017194           59 GPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDV  127 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i  127 (375)
                      -.+..+.++|++++|+.+...     ..|++.|+.++..+.  ..+..  .. ..++|.+|++.|+....+      ..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--ELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--ccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            346678899999988876543     278899998764221  11111  11 458999998877665432      367


Q ss_pred             EEEeCcCc--eeeeeEecCccccee-EEEEeeCCCcEEEEee--cCCeEEEeeCC
Q 017194          128 KIIDIRQH--CLYKSLRAGHSSICS-SVQFIPWKPWEVISGG--LDSKLVMWDFS  177 (375)
Q Consensus       128 ~iwd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~--~d~~i~~wd~~  177 (375)
                      +.+++.++  +....+. ....... ....+.+++++++...  .++.+.+++..
T Consensus       202 ~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        202 WRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            88888877  3333344 2222233 2233436765444333  34578888853

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.16  E-value=3.2  Score=35.35  Aligned_cols=195  Identities=15%  Similarity=0.133  Sum_probs=106.4

Q ss_pred             CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEc----CCCCe--EEEEe-CC---CcEEEEeCc--Cc
Q 017194           68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN----PKSSF--LACAD-DG---GDVKIIDIR--QH  135 (375)
Q Consensus        68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~--~~  135 (375)
                      |...+++....++-+.+||+. ++.++.+.     .+.++.+..-    -.++.  |++++ .+   ..|++|.+.  ++
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~-----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP-----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec-----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence            345567777778899999998 44444332     2333333321    13333  44444 32   469999775  33


Q ss_pred             eeeeeEec------CcccceeEEEEee---CCCcEEEEeecCCeEEEeeCC---CC----CcceEEecCCCCCCCCCCcc
Q 017194          136 CLYKSLRA------GHSSICSSVQFIP---WKPWEVISGGLDSKLVMWDFS---KG----RPNKIVNFGLPENNGNAGQC  199 (375)
Q Consensus       136 ~~~~~~~~------~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~  199 (375)
                      . +..+..      .....+..+++..   ++..+++....+|.+..|.+.   .+    +.++.+...           
T Consensus       140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-----------  207 (381)
T PF02333_consen  140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-----------  207 (381)
T ss_dssp             E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-----------
T ss_pred             c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-----------
Confidence            2 232220      1123467777743   355466777888988888774   22    345666644           


Q ss_pred             cCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcce
Q 017194          200 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR  279 (375)
Q Consensus       200 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~  279 (375)
                         ..+..+....      ....|+.+-++--|.-|+.+-..                                   ...
T Consensus       208 ---sQ~EGCVVDD------e~g~LYvgEE~~GIW~y~Aep~~-----------------------------------~~~  243 (381)
T PF02333_consen  208 ---SQPEGCVVDD------ETGRLYVGEEDVGIWRYDAEPEG-----------------------------------GND  243 (381)
T ss_dssp             ---S-EEEEEEET------TTTEEEEEETTTEEEEEESSCCC------------------------------------S-
T ss_pred             ---CcceEEEEec------ccCCEEEecCccEEEEEecCCCC-----------------------------------CCc
Confidence               5778888876      57889999998888888776321                                   001


Q ss_pred             eEeeeeec--CCCccEEEEEEeecCCC--CcEEEEecCCCeEEEEeCCCc
Q 017194          280 LHLDYSVG--GHTAAASCVAFSMFGER--GKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       280 ~~~~~~~~--~~~~~v~~~~~s~~~~~--~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      ...+....  .....|-.|++-.. .+  |-+|+|.-.+++..||+.+..
T Consensus       244 ~~~v~~~~g~~l~aDvEGlaly~~-~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  244 RTLVASADGDGLVADVEGLALYYG-SDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             -EEEEEBSSSSB-S-EEEEEEEE--CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ceeeecccccccccCccceEEEec-CCCCeEEEEEcCCCCeEEEEecCCC
Confidence            12221221  23456777777421 23  334455556889999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.13  E-value=0.26  Score=26.43  Aligned_cols=33  Identities=9%  Similarity=0.075  Sum_probs=25.6

Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      |++++++++...+++|.++|..+++.+..+..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            466656666667899999999988888887754

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.92  E-value=2.4  Score=33.70  Aligned_cols=145  Identities=10%  Similarity=0.070  Sum_probs=77.0

Q ss_pred             cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCC---CCcccccccccCCCcceeEEEEc
Q 017194           39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHM---PASWRPLESYNYNKEEINQIVCN  112 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~  112 (375)
                      .-.+||+.+++....-...+.-..+-.+.+||+.|.+|+..   ..+++++..+   ...+......-.....-.+....
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            35678888876432211122333344677899999888752   3688888654   11111111101113344456667


Q ss_pred             CCCCeEEEEeCCC-cEEEEeCcCc-eeeee---Eec----CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194          113 PKSSFLACADDGG-DVKIIDIRQH-CLYKS---LRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK  183 (375)
Q Consensus       113 ~~~~~l~~~~~dg-~i~iwd~~~~-~~~~~---~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  183 (375)
                      |||+.|+.|+... +..+|.-... .....   +..    ....----+...|+|+ +|+.+..+.  .+||..+.+.++
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCCc--EEEeCCCCeEEe
Confidence            8999999888764 3444443211 11111   110    0111122456679998 677776544  466887776555


Q ss_pred             EEe
Q 017194          184 IVN  186 (375)
Q Consensus       184 ~~~  186 (375)
                      .+.
T Consensus       204 ~lP  206 (243)
T PF07250_consen  204 TLP  206 (243)
T ss_pred             eCC
Confidence            543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.88  E-value=3.9  Score=35.39  Aligned_cols=155  Identities=14%  Similarity=0.048  Sum_probs=0.0

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      .+....+..+++ +.+++.+..-..++-||-....-...-......+.++.|.+++..++++...+.+.--|-.......
T Consensus       238 ~Gsf~~v~~~~d-G~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~  316 (398)
T PLN00033        238 TGTFSTVNRSPD-GDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDF  316 (398)
T ss_pred             ccceeeEEEcCC-CCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCccccc


Q ss_pred             ccccccCCCcc--eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE--ecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           95 PLESYNYNKEE--INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        95 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      .+.........  +..+.|.+++..+++| ..|.+....-....-...-  . .-....+.+.|.++++  ....+.+|.
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~~~-~~~~~ly~v~f~~~~~--g~~~G~~G~  392 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKGAD-NIAANLYSVKFFDDKK--GFVLGNDGV  392 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEccccC-CCCcceeEEEEcCCCc--eEEEeCCcE


Q ss_pred             EEEe
Q 017194          171 LVMW  174 (375)
Q Consensus       171 i~~w  174 (375)
                      |.-|
T Consensus       393 il~~  396 (398)
T PLN00033        393 LLRY  396 (398)
T ss_pred             EEEe

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.87  E-value=6.5  Score=37.83  Aligned_cols=176  Identities=14%  Similarity=0.144  Sum_probs=100.4

Q ss_pred             cEEEEecccCceeeEeeec----CccEEEEEEeCCCCe--EEEEcC-----------CCeEEEEECC-CCCccccccccc
Q 017194           39 CICWFDLRSKDVQLVTDVG----NGPVTSLCFKSGNED--IIYVSS-----------GKEVKSFDVH-MPASWRPLESYN  100 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~--l~~~~~-----------d~~i~iwd~~-~~~~~~~~~~~~  100 (375)
                      .|++.|..+++.+..+...    .-.+.++.|+.....  ++++..           +|.++.|++- .++.++.+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            4788888777765555432    234666677654333  333321           3456666653 233333333221


Q ss_pred             CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc-ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC-
Q 017194          101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-  178 (375)
Q Consensus       101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-  178 (375)
                       -.+++  .+..|-..++++| ....+++||+...++++.....+ ...|..+++.-.   .+++|...-.+.++..+. 
T Consensus       934 -~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~---RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen  934 -IPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA---RIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred             -CCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecce---EEEEeeccceEEEEEEecC
Confidence             12333  3455655566666 44689999998877766544222 456777776543   577777655565544433 


Q ss_pred             CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .+.+..+....           -+..++.+.+-       |...++.+..-|.+.+..+..
T Consensus      1007 ~n~l~~fadD~-----------~pR~Vt~~~~l-------D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1007 DNQLIVFADDP-----------VPRHVTALELL-------DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCeEEEEeCCC-----------ccceeeEEEEe-------cCCceeeccccCcEEEEECCC
Confidence            22333332110           24567777666       578889998888888877764

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.67  E-value=0.54  Score=40.10  Aligned_cols=162  Identities=9%  Similarity=0.028  Sum_probs=92.1

Q ss_pred             eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCc----cee-EEEEcCCCCeEEEEeCCCcEE
Q 017194           54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE----EIN-QIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        54 ~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      +......|..+-..|||+.+..-+. .++.++++.+.. .+.-+......+    .|+ .+.....+..+++++.||.|.
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~-l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs  293 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS-LQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS  293 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccc-cchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence            3344567788889999998877664 788899887532 111111111111    222 222233566788889999988


Q ss_pred             EE-eCcCc-e----eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC
Q 017194          129 II-DIRQH-C----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP  202 (375)
Q Consensus       129 iw-d~~~~-~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (375)
                      -| |++.+ .    .++.++ -...++..+.-..+.+ -+++-+..|++..+.....+.+-.-..              -
T Consensus       294 QWFdvr~~~~p~l~h~R~f~-l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~lL~~~~--------------~  357 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFK-LAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLLLFERA--------------Y  357 (733)
T ss_pred             eeeeeecCCCCcceeeeccc-cCcccceeeccccccc-eEEEEcCCCceeeeecccCcceehhhh--------------h
Confidence            77 44432 1    122222 1123333332222223 577778888888877554443322221              1


Q ss_pred             CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      ..+.-++++|      ++.++++- ..|.|+++.+++.
T Consensus       358 ~~~~~~~~Sp------~~~~Ll~e-~~gki~~~~l~Nr  388 (733)
T COG4590         358 QAPQLVAMSP------NQAYLLSE-DQGKIRLAQLENR  388 (733)
T ss_pred             cCcceeeeCc------ccchheee-cCCceEEEEecCC
Confidence            3556788888      67777764 3468999988764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.45  E-value=7  Score=36.85  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=21.9

Q ss_pred             CcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194          103 KEEINQIVCNPKSSFLACADDGGDVKIIDI  132 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (375)
                      .-.|..+.++|+|++++..+..| |.|..+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            34688999999999999887755 555444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.19  E-value=3  Score=31.86  Aligned_cols=186  Identities=11%  Similarity=0.069  Sum_probs=99.4

Q ss_pred             CCCEEEEeCCC--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCcccccccccCCC
Q 017194           27 RPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYNYNK  103 (375)
Q Consensus        27 ~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~  103 (375)
                      ++.++.+.+.-  ..|++||+.+++.+..-......+..=-...-+.++.. .=.+|.-..+|.++-   +.+..+.. +
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~y-~  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFSY-E  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhccccc-C
Confidence            35666666543  46999999998876554432112211111111232222 233677788887753   33333322 2


Q ss_pred             cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec---C-cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC
Q 017194          104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---G-HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG  179 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  179 (375)
                      +.=+.++  .|+..|..++...+++.-|.++.....++..   + .-..++.+.|- +|. +++-.-.+..|...|..+|
T Consensus       131 GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sG  206 (262)
T COG3823         131 GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSG  206 (262)
T ss_pred             Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCC
Confidence            3334443  3555677776667788888776544433321   1 11233445554 343 5666666667777888888


Q ss_pred             CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          180 RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      +.+..+....-. ........+....+.+++.|.     .++++++|
T Consensus       207 rV~~widlS~L~-~~~~~~~~~~nvlNGIA~~~~-----~~r~~iTG  247 (262)
T COG3823         207 RVVAWIDLSGLL-KELNLDKSNDNVLNGIAHDPQ-----QDRFLITG  247 (262)
T ss_pred             cEEEEEEccCCc-hhcCccccccccccceeecCc-----CCeEEEec
Confidence            887777644100 000111113456788999884     34666665

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.17  E-value=4.8  Score=34.24  Aligned_cols=11  Identities=9%  Similarity=0.202  Sum_probs=8.3

Q ss_pred             CCCcEEEeeCC
Q 017194          356 ESENLVVCDTS  366 (375)
Q Consensus       356 ~~~~l~s~~~d  366 (375)
                      ++++++.|+.+
T Consensus       321 ~~~iyv~GG~~  331 (346)
T TIGR03547       321 NNGVLLIGGEN  331 (346)
T ss_pred             CCEEEEEeccC
Confidence            77788888765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.68  E-value=6.1  Score=36.51  Aligned_cols=70  Identities=13%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      ...++++.-+|. ++-++.+..||+|++|+......-+... ...+-..+.|...|  |+++..|..+.-|.-.
T Consensus        14 ~e~~~aiqshp~-~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   14 DEFTTAIQSHPG-GQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED   83 (1636)
T ss_pred             cceeeeeeecCC-CceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence            455777888887 8999999999999999987655422222 23344556676544  6677777777777643

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.59  E-value=4.6  Score=39.67  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             cceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194          104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQ  134 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  134 (375)
                      .....++|+|..+.++.+...|.|+++-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3556789999999999999999999987543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.37  E-value=5.6  Score=32.92  Aligned_cols=279  Identities=10%  Similarity=0.016  Sum_probs=122.8

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeE--eeec---CccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLV--TDVG---NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~--~~~~---~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      ..++..|.|..+ ..-+++|. .+.|  +.... |+.=..  ....   .-...++.|..+ ..+++| ..+ +.+...+
T Consensus        16 ~~~l~dV~F~d~-~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~D   88 (302)
T PF14870_consen   16 DKPLLDVAFVDP-NHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTD   88 (302)
T ss_dssp             SS-EEEEEESSS-S-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESS
T ss_pred             CCceEEEEEecC-CEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecC
Confidence            457899999844 45566555 4533  33333 322111  1111   224667777643 344444 344 4455555


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      .++.+..+..-..-++....+....++..+++ +..|.|+.= .+.++.=+.+...-...+..+.-+++|. +++++..-
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~-~vavs~~G  165 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR-YVAVSSRG  165 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS--EEEEETTS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc-EEEEECcc
Confidence            56666665421111223333443344433343 445554432 2233332222214456788888899997 56666554


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      ....-||.-.. .-......            ....|.+|.|.|      ++.+.+++ ..|.|++=+.....       
T Consensus       166 ~~~~s~~~G~~-~w~~~~r~------------~~~riq~~gf~~------~~~lw~~~-~Gg~~~~s~~~~~~-------  218 (302)
T PF14870_consen  166 NFYSSWDPGQT-TWQPHNRN------------SSRRIQSMGFSP------DGNLWMLA-RGGQIQFSDDPDDG-------  218 (302)
T ss_dssp             SEEEEE-TT-S-S-EEEE--------------SSS-EEEEEE-T------TS-EEEEE-TTTEEEEEE-TTEE-------
T ss_pred             cEEEEecCCCc-cceEEccC------------ccceehhceecC------CCCEEEEe-CCcEEEEccCCCCc-------
Confidence            45557774322 12222212            357899999998      66665654 77888877622210       


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeE-eeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH-LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                                                   .... ...........+..++|.   +++...|+|+. |.+ +.....++.
T Consensus       219 -----------------------------~~w~~~~~~~~~~~~~~ld~a~~---~~~~~wa~gg~-G~l-~~S~DgGkt  264 (302)
T PF14870_consen  219 -----------------------------ETWSEPIIPIKTNGYGILDLAYR---PPNEIWAVGGS-GTL-LVSTDGGKT  264 (302)
T ss_dssp             -----------------------------EEE---B-TTSS--S-EEEEEES---SSS-EEEEEST-T-E-EEESSTTSS
T ss_pred             -----------------------------cccccccCCcccCceeeEEEEec---CCCCEEEEeCC-ccE-EEeCCCCcc
Confidence                                         0011 011122223458899998   77777777765 433 334444421


Q ss_pred             eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      -      +.......-......+.|.+ + +.-...+.+|.|.-|
T Consensus       265 W------~~~~~~~~~~~n~~~i~f~~-~-~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  265 W------QKDRVGENVPSNLYRIVFVN-P-DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -------EE-GGGTTSSS---EEEEEE-T-TEEEEE-STTEEEEE
T ss_pred             c------eECccccCCCCceEEEEEcC-C-CceEEECCCcEEEEe
Confidence            1      11111223345677888876 3 345555678887665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.17  E-value=7.4  Score=33.89  Aligned_cols=148  Identities=14%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcc--cccccccCCCcceeEEEEcC-----CCCeEEEEeCCCcEEEEeCcC--ce---
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASW--RPLESYNYNKEEINQIVCNP-----KSSFLACADDGGDVKIIDIRQ--HC---  136 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~--~~---  136 (375)
                      +...|++|+..|.++||+.......  ..+-..+ -..+|..+..-.     +...||+ -.-..+.+|.+..  +.   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            3468999999999999998643211  1111111 146777776542     2234555 4557788888731  11   


Q ss_pred             ----eeeeEecCcc--cceeEEEEeeCC----CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          137 ----LYKSLRAGHS--SICSSVQFIPWK----PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       137 ----~~~~~~~~~~--~~v~~~~~~~~~----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                          .+..+. .|.  .....++.-|-|    ..++.+-+.||.+.+|+-+.-..  ...++         ....|+   
T Consensus       114 g~~~~L~~~y-eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--~~~lp---------~~llPg---  178 (418)
T PF14727_consen  114 GNQYQLELIY-EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--SRFLP---------DFLLPG---  178 (418)
T ss_pred             CcEEEEEEEE-EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--EEEcC---------CCCCCc---
Confidence                122222 232  233445554433    24788899999999999664322  22222         011223   


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .+.+.+      ....+++++.+..+.-|....
T Consensus       179 Pl~Y~~------~tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  179 PLCYCP------RTDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             CeEEee------cCCEEEEecCceeEEEecHHH
Confidence            355666      577888888888888887653

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.13  E-value=8.5  Score=34.49  Aligned_cols=144  Identities=14%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCC-cceeEEEEcCCC
Q 017194           37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-EEINQIVCNPKS  115 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~  115 (375)
                      .+...+.|.+ |..+..+.........+...++|.+++...  +.++.+|+. |+.... ..+.... .-=..+...|+|
T Consensus       127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~-~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWE-YDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEE-EE--TTEE-B-S-EEE-TTS
T ss_pred             CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEe-eecCCcccccccccEECCCC
Confidence            3455566633 554444433222221266678888776554  778888876 332222 1111100 011346677889


Q ss_pred             CeEEEEeC-------------CCcEEEEeCcCceeeeeEec-Cc----c---------------------cceeEEEEee
Q 017194          116 SFLACADD-------------GGDVKIIDIRQHCLYKSLRA-GH----S---------------------SICSSVQFIP  156 (375)
Q Consensus       116 ~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~-~~----~---------------------~~v~~~~~~~  156 (375)
                      ++|+.+..             .-.|..+| .+|+.+..+.. .|    .                     --++++.+.+
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~  280 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP  280 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred             CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence            88887761             11245555 55655544321 00    0                     1368999999


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  186 (375)
                      .+..+++++-.-..|...|.++++....+-
T Consensus       281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             TTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred             CCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence            555456666556689999988887766654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.05  E-value=5.8  Score=32.42  Aligned_cols=119  Identities=7%  Similarity=-0.057  Sum_probs=69.3

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCC----CcccccccccC-----CCcceeEEEEcCCCC------------eE
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP----ASWRPLESYNY-----NKEEINQIVCNPKSS------------FL  118 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l  118 (375)
                      .-+.|+++|.+..-++....+...+||....    .....+-.+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3467999999987777777789999998621    01111111111     124567777764322            25


Q ss_pred             EEEeCCCcEEEEeCcCcee-----eeeEecCcccce-eEEEEeeC--CCcEEEEeecCCeEEEeeCCC
Q 017194          119 ACADDGGDVKIIDIRQHCL-----YKSLRAGHSSIC-SSVQFIPW--KPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       119 ~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v-~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      +.+++||+|.-|...-...     ...+.......| ..+++...  +.++.++--..++|.+||-.-
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            6778999999998542211     122221112333 45565543  444556666789999998553

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.78  E-value=7.2  Score=32.91  Aligned_cols=118  Identities=13%  Similarity=0.052  Sum_probs=70.2

Q ss_pred             CcceeEEEEcCCCCeEEEEeCCCc------EEEEeCcC--c--eee-----eeEecCccc--------ceeEEEEeeCCC
Q 017194          103 KEEINQIVCNPKSSFLACADDGGD------VKIIDIRQ--H--CLY-----KSLRAGHSS--------ICSSVQFIPWKP  159 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~~--------~v~~~~~~~~~~  159 (375)
                      -+.+..+.+.+++..+++.+++|.      +..+++..  +  ..+     ..+. ...+        ...+|++.+++.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcCCcCCCChhHeEEecCCC
Confidence            456788999876666666677777      66555543  1  011     1111 1111        345788877776


Q ss_pred             cEEEEeecC------CeEEEeeCCCCCcceEEecCCCCCCCC--CCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          160 WEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGN--AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       160 ~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                       ++++.-.+      ..|+.++.. |+....+..+..-....  ..........-+|+++|      +++.|+++.+.
T Consensus        98 -~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~------dG~~l~~~~E~  167 (326)
T PF13449_consen   98 -FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP------DGRTLFAAMES  167 (326)
T ss_pred             -EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC------CCCEEEEEECc
Confidence             56666666      789899977 77776664331110001  13333456788999999      78877766543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.73  E-value=0.98  Score=24.11  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=22.6

Q ss_pred             cCCCCEEEEeCCCCcEEEEecccCceeeEeee
Q 017194           25 RDRPGFVASSGEDGCICWFDLRSKDVQLVTDV   56 (375)
Q Consensus        25 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~   56 (375)
                      |+++.++++...+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            45233444555678999999988888777765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=91.71  E-value=5.8  Score=31.70  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             CcceeEEEEcCC-------CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee--C-CCcEEEEeecCCeEE
Q 017194          103 KEEINQIVCNPK-------SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP--W-KPWEVISGGLDSKLV  172 (375)
Q Consensus       103 ~~~v~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~l~~~~~d~~i~  172 (375)
                      ...|+|++--..       -..|+.|.++|.|.|.|......+..+. -..-++ .+.-..  + .++.++.++.||.|+
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~-lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy  253 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQ-LPSVPV-FISVSGQYDEVDYRIVVACRDGKIY  253 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEe-cCCCce-EEEEEeeeeccceEEEEEeCCCEEE
Confidence            345677665331       2468999999999999998888877776 333333 222221  1 345789999999987


Q ss_pred             Ee
Q 017194          173 MW  174 (375)
Q Consensus       173 ~w  174 (375)
                      +.
T Consensus       254 ~i  255 (257)
T PF14779_consen  254 TI  255 (257)
T ss_pred             EE
Confidence            64

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.67  E-value=1.1  Score=38.26  Aligned_cols=168  Identities=14%  Similarity=0.115  Sum_probs=96.4

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-eE-eeecC----ccEE-EEEEeCCCCeEEEEcCCC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LV-TDVGN----GPVT-SLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~-~~~~~----~~v~-~l~~~~~~~~l~~~~~d~   80 (375)
                      ++.+..-.+.|..+-..|| ++.+..-+. ..+.++++.+.... +. .....    ..|+ .+..-..|..++++..||
T Consensus       213 i~~L~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG  290 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG  290 (733)
T ss_pred             hhhcCCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence            3445555677888889999 787766554 57888888754431 11 11111    1122 222234566688888899


Q ss_pred             eEEEE-ECCCCCc--ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194           81 EVKSF-DVHMPAS--WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        81 ~i~iw-d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      -|.-| |.+.+..  ...++.++....++.-+.-..+.+-+++-+.+|++..+.-...+.+-.-.  --..+.-++++|.
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~Sp~  368 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAMSPN  368 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeeeCcc
Confidence            88766 5543222  22233333223344433333334557778888998887754443322211  2235677899999


Q ss_pred             CCcEEEEeecCCeEEEeeCCCCCc
Q 017194          158 KPWEVISGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       158 ~~~~l~~~~~d~~i~~wd~~~~~~  181 (375)
                      +.+ +++ ...|.++++.+++..+
T Consensus       369 ~~~-Ll~-e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAY-LLS-EDQGKIRLAQLENRNP  390 (733)
T ss_pred             cch-hee-ecCCceEEEEecCCCC
Confidence            984 444 3567899998876544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.28  E-value=1.5  Score=40.16  Aligned_cols=74  Identities=8%  Similarity=0.187  Sum_probs=44.1

Q ss_pred             CCCCeEEEEcCCCeEEEEECCC----CCcccc-----------cccc--------cCCCcceeEEEEcC----CCCeEEE
Q 017194           68 SGNEDIIYVSSGKEVKSFDVHM----PASWRP-----------LESY--------NYNKEEINQIVCNP----KSSFLAC  120 (375)
Q Consensus        68 ~~~~~l~~~~~d~~i~iwd~~~----~~~~~~-----------~~~~--------~~~~~~v~~~~~~~----~~~~l~~  120 (375)
                      ++...++.+..||.+.......    +.....           +..+        .........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888898887777653    111110           1111        00123455566666    6778999


Q ss_pred             EeCCCcEEEEeCcCceeeeeE
Q 017194          121 ADDGGDVKIIDIRQHCLYKSL  141 (375)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~  141 (375)
                      .+.|+.+++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999886654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.20  E-value=10  Score=33.56  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=19.1

Q ss_pred             ceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194          105 EINQIVCNPKSSFLACADDGGDVKII  130 (375)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (375)
                      .|..+..++.|..++-.+.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            46677788888888888888755443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.02  E-value=14  Score=34.90  Aligned_cols=29  Identities=10%  Similarity=0.088  Sum_probs=21.7

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      .-.|..+.++|+|.+++..|..| |.|-.+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            35688899999999998888654 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.51  E-value=2  Score=39.28  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=45.3

Q ss_pred             CCCCeEEEEeCCCcEEEEeCcC----ceeeee-EecC--------------------cccceeEEEEee----CCCcEEE
Q 017194          113 PKSSFLACADDGGDVKIIDIRQ----HCLYKS-LRAG--------------------HSSICSSVQFIP----WKPWEVI  163 (375)
Q Consensus       113 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~-~~~~--------------------~~~~v~~~~~~~----~~~~~l~  163 (375)
                      ++...++.+..||.+.......    +..... ....                    ....+..++.+.    +.. +++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  234 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FLF  234 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EEE
Confidence            4666888888999988877653    111111 1000                    112345555555    444 899


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecC
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +.+.|+++|+||+.+++++......
T Consensus       235 tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EEETTSEEEEEETTTTCEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCeEEEEeccc
Confidence            9999999999999999997776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.33  E-value=8.9  Score=31.40  Aligned_cols=117  Identities=16%  Similarity=0.254  Sum_probs=64.5

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc------CCCeEEEEECCCCCccccccc-c-cCCCcceeEE
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS------SGKEVKSFDVHMPASWRPLES-Y-NYNKEEINQI  109 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~~  109 (375)
                      ..|++||..+.+-..--.+-.+.|++|.|..+.+.++.|.      ....+..||..+.. +..+.. . ..-.++|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence            3599999886654333333467899999987666666653      24578899988642 333332 1 1124677777


Q ss_pred             EEcC-CC-CeEEEEe-CCC--cEEEEeCcCceeeee-EecCcccceeEEEEee
Q 017194          110 VCNP-KS-SFLACAD-DGG--DVKIIDIRQHCLYKS-LRAGHSSICSSVQFIP  156 (375)
Q Consensus       110 ~~~~-~~-~~l~~~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~  156 (375)
                      .+.. |+ +..+.|. .++  .|..||=.+-..+.. .. .....|..+.+-|
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~-~~~t~I~~l~~~~  146 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDIL-GSGTTIRGLQVLP  146 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEecccccc-CCCCEEEEEEEEe
Confidence            7743 33 3343443 233  356665433333332 11 2234555555444

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.31  E-value=18  Score=34.84  Aligned_cols=157  Identities=10%  Similarity=0.017  Sum_probs=0.0

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEec-----ccCceeeEeeecCccE------E----EEEEeCCCCeEEEEcCCC
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDL-----RSKDVQLVTDVGNGPV------T----SLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~-----~~~~~~~~~~~~~~~v------~----~l~~~~~~~~l~~~~~d~   80 (375)
                      .+...++|+|.+.+.||.....|.-.||++     ...........+.+.+      .    .+.|.++-+.|+.+. ..
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC----ceeeeeEecCcccce----eEE
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----HCLYKSLRAGHSSIC----SSV  152 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v----~~~  152 (375)
                      .+.++|+++...... -........|.++.-+|...-.+.--....|...++..    .+.+..++  |....    ..+
T Consensus       225 ~l~~~d~~~~~~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwk--H~~d~~D~tLrl  301 (765)
T PF10214_consen  225 KLMLIDFESNWQTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWK--HFRDPEDPTLRL  301 (765)
T ss_pred             ceEEEECCCCCccch-hccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecc--cccCCCCCceEE


Q ss_pred             EEeeC-CC--cEEEEeecCCeEEEeeC
Q 017194          153 QFIPW-KP--WEVISGGLDSKLVMWDF  176 (375)
Q Consensus       153 ~~~~~-~~--~~l~~~~~d~~i~~wd~  176 (375)
                      ..... +.  .+++.......|.+|.+
T Consensus       302 ~~~~~~~~~~~~~lyS~~~~~v~v~~f  328 (765)
T PF10214_consen  302 SVQKVGDTDFVVFLYSRLNPLVYVYFF  328 (765)
T ss_pred             EEEEcCCCEEEEEEEcCCCCcEEEEEE

These proteins are found in fungi.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.30  E-value=11  Score=32.63  Aligned_cols=120  Identities=15%  Similarity=0.189  Sum_probs=78.8

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc-ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH  135 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (375)
                      ..++|.++.|++|.+.||+--.+++|.+++....+. .......+.....|....|+.+ .-+|.....| +.+|-....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            467999999999999999999999999999843222 2223333333556889999876 4566555444 666655432


Q ss_pred             -eeeeeEecCcccceeEEEEeeCCCcEEEEee-cCCeEEEeeCCCC
Q 017194          136 -CLYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKG  179 (375)
Q Consensus       136 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~  179 (375)
                       +.++..+ .|...|+-..|.++..-.+++.+ ..+++.=+-++++
T Consensus       143 krslRlVk-s~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  143 KRSLRLVK-SHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhh-hcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence             3345555 78888999999998873333333 3444444444443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.02  E-value=6.2  Score=38.90  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=30.7

Q ss_pred             CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      .+..+|..+++.   ...+.+.+-++.|+|.+||+..
T Consensus       240 ~~~dpI~qi~ID---~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITID---NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEec---cccceeeeeccCceEEEEEccC
Confidence            678899999998   7778899999999999999987

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.01  E-value=1.5  Score=22.99  Aligned_cols=30  Identities=7%  Similarity=0.075  Sum_probs=20.7

Q ss_pred             cccceeEEEEeeCCCcEEEEeecC--CeEEEe
Q 017194          145 HSSICSSVQFIPWKPWEVISGGLD--SKLVMW  174 (375)
Q Consensus       145 ~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~w  174 (375)
                      ....-....|+|||++++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567889999999766777666  666555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=89.77  E-value=11  Score=31.83  Aligned_cols=273  Identities=9%  Similarity=-0.007  Sum_probs=124.6

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecc-cCceeeE----eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLV----TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~----~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      ...+.++.|..+ .+-+++|. +|.|  |... .|+.=+.    +......+.++.|.++ ..+++ +..+.|.. .-+.
T Consensus        45 ~~~l~~v~F~d~-~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg  117 (334)
T PRK13684         45 EANLLDIAFTDP-NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG  117 (334)
T ss_pred             CCceEEEEEeCC-CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence            457889999854 55566664 4433  3322 2222111    1112334777888643 33443 44454322 2233


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      ++.++.+............+.....+..+++ +..|.|..=+ +.++.-..+...-...+.++.+.|++.  ++..+..|
T Consensus       118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~g~~G  193 (334)
T PRK13684        118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK--YVAVSSRG  193 (334)
T ss_pred             CCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe--EEEEeCCc
Confidence            4445444321000111122222222223333 3445443322 233332222212345788899999875  45555566


Q ss_pred             eEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          170 KLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       170 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      .+..- .+.+ +.-..+...            ....++++.+.+      +++.++++ ..|.+++=....+..-.....
T Consensus       194 ~i~~s-~~~gg~tW~~~~~~------------~~~~l~~i~~~~------~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~  253 (334)
T PRK13684        194 NFYST-WEPGQTAWTPHQRN------------SSRRLQSMGFQP------DGNLWMLA-RGGQIRFNDPDDLESWSKPII  253 (334)
T ss_pred             eEEEE-cCCCCCeEEEeeCC------------CcccceeeeEcC------CCCEEEEe-cCCEEEEccCCCCCccccccC
Confidence            55432 1222 222222222            245788889988      67776665 456654322222221111111


Q ss_pred             c---CCCCCCceeecccccceee--eee-ee-cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          249 T---TKPLKGSQSTSKVNIRDAE--MEI-LD-QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       249 ~---~~~~~~~~~~s~~g~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                      +   .......+.+.+++..++.  .+. .. ......++.......-....+.+.|.   .+++.++ .+..|.|.-|+
T Consensus       254 ~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~---~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        254 PEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFL---DPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             CccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEe---CCCceEE-ECCCceEEEec
Confidence            1   1122345667777765554  121 11 12223333322212223467778876   5565555 45568887776


Q ss_pred             C
Q 017194          322 C  322 (375)
Q Consensus       322 ~  322 (375)
                      -
T Consensus       330 ~  330 (334)
T PRK13684        330 G  330 (334)
T ss_pred             C
Confidence            4

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.76  E-value=11  Score=31.75  Aligned_cols=107  Identities=11%  Similarity=0.180  Sum_probs=62.5

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCe------EEEEECCCCC-ccccc---c--cccCCC--------cceeEEEEcCCCCe
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKE------VKSFDVHMPA-SWRPL---E--SYNYNK--------EEINQIVCNPKSSF  117 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~------i~iwd~~~~~-~~~~~---~--~~~~~~--------~~v~~~~~~~~~~~  117 (375)
                      -+.+..|.+.+++..+++.+.++.      +...++.... ....+   .  .+....        ...-++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356778888866666777777776      6555554310 00111   0  011111        13447888777777


Q ss_pred             EEEEeCC------CcEEEEeCcCceeeeeEec--------------CcccceeEEEEeeCCCcEEEEee
Q 017194          118 LACADDG------GDVKIIDIRQHCLYKSLRA--------------GHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       118 l~~~~~d------g~i~iwd~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      +++.-.+      ..|+.++.. ++.+..+..              ..+....+|+++|+|. .|+++.
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~  165 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAM  165 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEE
Confidence            7776666      678888865 555443310              1345788999999998 455544

>PLN02153 epithiospecifier protein

Probab=89.30  E-value=13  Score=31.67  Aligned_cols=105  Identities=11%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             CCEEEEeCCC-------CcEEEEecccCceeeEeee---cCc---cEEEEEEeCCCCeEEEEcCC-----CeEEEEECCC
Q 017194           28 PGFVASSGED-------GCICWFDLRSKDVQLVTDV---GNG---PVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHM   89 (375)
Q Consensus        28 ~~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~---~~~---~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~   89 (375)
                      +.+++.|+.+       ..+.+||+.+.+-......   ...   ....+.+  +++.++.|+.+     ..+.+||+.+
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence            5677777753       2577888776543211110   010   1112222  45566666653     3578889875


Q ss_pred             CCcccccccccC---CCcceeEEEEcCCCCeEEEEeCC-----------CcEEEEeCcCc
Q 017194           90 PASWRPLESYNY---NKEEINQIVCNPKSSFLACADDG-----------GDVKIIDIRQH  135 (375)
Q Consensus        90 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~  135 (375)
                      . .+..+.....   ........+..-+++.++.|+.+           ..+.+||+++.
T Consensus       111 ~-~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153        111 N-EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             C-EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            4 2333332210   01111111222345566666643           24778888765

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.22  E-value=9.7  Score=37.53  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=24.9

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLR   46 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~   46 (375)
                      .....++|+|. ..++|.+...|.|+++-..
T Consensus        36 ~~~~~~afD~~-q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPT-QGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccc-cceEEEEEecccEEEeccc
Confidence            34556889998 8899999999999999754

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.44  E-value=6.6  Score=29.45  Aligned_cols=31  Identities=13%  Similarity=0.264  Sum_probs=25.1

Q ss_pred             cceeEEEEcCCC------CeEEEEeCCCcEEEEeCcC
Q 017194          104 EEINQIVCNPKS------SFLACADDGGDVKIIDIRQ  134 (375)
Q Consensus       104 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~  134 (375)
                      ..+..++|||.|      .+|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999943      3588888999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.01  E-value=6.6  Score=34.64  Aligned_cols=26  Identities=19%  Similarity=0.083  Sum_probs=19.0

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEE
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWF   43 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw   43 (375)
                      .|..+..++. |..++-+|.+|.+..+
T Consensus       105 eV~~vl~s~~-GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPT-GSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCC-CceEEEecCCeeEEEE
Confidence            4677788888 7888888888855443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.95  E-value=11  Score=29.21  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=65.2

Q ss_pred             CeEEEEeCCCcEEEEeCc--CceeeeeEecCcccceeEEEEeeCCCcEEEEeecC---C---eEEEe---eCC--CCCcc
Q 017194          116 SFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---S---KLVMW---DFS--KGRPN  182 (375)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~---~i~~w---d~~--~~~~~  182 (375)
                      ..|+.+...+.|.+|++.  ..+.+..|.  --+.|..+.++..|+ ++++--.+   .   .+|+|   +..  ..+++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            344444566789999988  335566776  347899999999999 57775432   2   45554   322  22333


Q ss_pred             eEEecCCCCC---CCCCC------cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          183 KIVNFGLPEN---NGNAG------QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       183 ~~~~~~~~~~---~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .....+++-.   .....      ..-....+.+++..|.     .|++++ |+. +.+.+|.+..
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~-----tG~LlV-g~~-~~l~lf~l~~  164 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPV-----TGNLLV-GCG-NKLVLFTLKY  164 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCC-----CCCEEE-EcC-CEEEEEEEEE
Confidence            3222231110   00000      0012346778888885     566554 443 5899998875

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=87.86  E-value=15  Score=30.60  Aligned_cols=69  Identities=10%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccE---EE--EEEeCCCCeEEEEcCCCeEEEEEC
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV---TS--LCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v---~~--l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      |+++...++ |.+|+|+-.-.+|.+.+..+|+.+..+.+....=   ..  .++-.+-+.+-....++.|.++|=
T Consensus       146 iNsV~~~~~-G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDD-GDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCC-ccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            778888887 8999999988999999999999988887652211   11  222223333333456788888886

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.67  E-value=17  Score=31.28  Aligned_cols=114  Identities=9%  Similarity=0.006  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc-c
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-S  147 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~  147 (375)
                      ++ .+.++..+|.|.-.|.++++..-...... ....+..-.+..+|+ ++.++.++.++.+|.++++.+.... ... .
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~~  143 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRN-VGGSP  143 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEe-cCCCe
Confidence            44 45556778888888888776322111110 011222222222564 8888889999999998898887777 333 1


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      .+..-....++  .+..++.++.+...|..+++........
T Consensus       144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~  182 (370)
T COG1520         144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETP  182 (370)
T ss_pred             EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecC
Confidence            12222233344  4555557899999999999888877654

>PLN02153 epithiospecifier protein

Probab=87.49  E-value=17  Score=30.93  Aligned_cols=20  Identities=35%  Similarity=0.414  Sum_probs=13.0

Q ss_pred             EEEEeecC-----CeEEEeeCCCCC
Q 017194          161 EVISGGLD-----SKLVMWDFSKGR  180 (375)
Q Consensus       161 ~l~~~~~d-----~~i~~wd~~~~~  180 (375)
                      +++.|+.+     ..+.+||+.+.+
T Consensus        88 iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         88 LYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             EEEECCCCCCCccCcEEEEECCCCE
Confidence            67777753     247788877644

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.29  E-value=12  Score=28.98  Aligned_cols=51  Identities=10%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      .|+.+...+.|.+|++..........+.            .-+.|..+.++.      .|+++++--.+
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~------------Tv~~V~~l~y~~------~GDYlvTlE~k   80 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFS------------TVGRVLQLVYSE------AGDYLVTLEEK   80 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEc------------chhheeEEEecc------ccceEEEEEee
Confidence            4555566788999999844333333323            347889999998      69999987543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.22  E-value=19  Score=31.19  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             CCCeEEEEcC-CCeEEEEECCCC-CcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----------CcEEEEeCcCc
Q 017194           69 GNEDIIYVSS-GKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----------GDVKIIDIRQH  135 (375)
Q Consensus        69 ~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~  135 (375)
                      +++..+.++. +..+.++|+... ..+..+..+... .........-++...+.|+..           ..+..||..+.
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            3444444443 345677777532 233333333210 111111122345566666643           24777887654


Q ss_pred             e
Q 017194          136 C  136 (375)
Q Consensus       136 ~  136 (375)
                      +
T Consensus       117 ~  117 (376)
T PRK14131        117 S  117 (376)
T ss_pred             E
Confidence            3

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.21  E-value=2.9  Score=21.87  Aligned_cols=33  Identities=15%  Similarity=0.208  Sum_probs=19.9

Q ss_pred             eeecCCCceeEEEEecCCCCEEE-EeCCC--CcEEEE
Q 017194           10 RLRGHKATATCCIASRDRPGFVA-SSGED--GCICWF   43 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~-s~~~d--~~i~iw   43 (375)
                      .+......-....|+|| |+.|+ ++..+  |.-.||
T Consensus         3 ~~t~~~~~~~~p~~SpD-Gk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPD-GKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EES-SSSSEEEEEE-TT-SSEEEEEEECT--SSEEEE
T ss_pred             CcccCCccccCEEEecC-CCEEEEEecCCCCCCcCEE
Confidence            34445566778899999 66555 55555  665555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.09  E-value=17  Score=30.59  Aligned_cols=107  Identities=8%  Similarity=0.058  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCC-----CeEEEEECCCCCc---ccccccccCCCcceeEEEEcCCCCeEEEEeC-----CCcEEEEeCcCc
Q 017194           69 GNEDIIYVSSG-----KEVKSFDVHMPAS---WRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQH  135 (375)
Q Consensus        69 ~~~~l~~~~~d-----~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~  135 (375)
                      ++..++.|+.+     ..+..+|+.+.+-   +..+..+....... +++. -+++..+.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            45566666654     3567777765432   12222221111111 1222 24556666653     235888888765


Q ss_pred             ee--eeeEecCcccceeEEEEeeCCCcEEEEeecCC----eEEEeeCCCCC
Q 017194          136 CL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDS----KLVMWDFSKGR  180 (375)
Q Consensus       136 ~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~  180 (375)
                      +=  +..+. . .......+..-++. +++.|+.++    .+..||..+.+
T Consensus       150 ~W~~~~~~p-~-~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       150 EWFELPDFP-G-EPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CeeECCCCC-C-CCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCe
Confidence            32  22222 1 11112222233444 777777654    24578877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.78  E-value=22  Score=31.51  Aligned_cols=58  Identities=7%  Similarity=0.003  Sum_probs=37.2

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc--cccccc--cCCCcceeEEEEcCCC
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLESY--NYNKEEINQIVCNPKS  115 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~--~~~~~~v~~~~~~~~~  115 (375)
                      -.....|+|.|+++.|++--..|.|++++..++...  ..+...  .........|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345688999999976665544699999986543211  111111  1125778999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.74  E-value=16  Score=29.94  Aligned_cols=95  Identities=13%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             CCeEEEEECCCCCcccccc-cccCCCcceeEEEEcCCCCeEEEEe------CCCcEEEEeCcCceeeeeEec----Cccc
Q 017194           79 GKEVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLRA----GHSS  147 (375)
Q Consensus        79 d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~----~~~~  147 (375)
                      ...|++||..+.+ +..+. .+   .+.|+.+.|..+.++++.|.      ....+..||..+..- ..+..    .-.+
T Consensus        15 C~~lC~yd~~~~q-W~~~g~~i---~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipg   89 (281)
T PF12768_consen   15 CPGLCLYDTDNSQ-WSSPGNGI---SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPG   89 (281)
T ss_pred             CCEEEEEECCCCE-eecCCCCc---eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCC
Confidence            3579999988543 33332 33   67899999987777777764      345688899876532 23331    1236


Q ss_pred             ceeEEEEeeCCC-cEEEEee-cC--CeEEEeeCCC
Q 017194          148 ICSSVQFIPWKP-WEVISGG-LD--SKLVMWDFSK  178 (375)
Q Consensus       148 ~v~~~~~~~~~~-~~l~~~~-~d--~~i~~wd~~~  178 (375)
                      +|..+.+..... .+.+.|. .+  ..|..||=.+
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            788887754333 2444443 23  3466666443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.30  E-value=21  Score=30.80  Aligned_cols=202  Identities=11%  Similarity=-0.022  Sum_probs=103.3

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeec--CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI  106 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  106 (375)
                      ..+..+..+|.|.-.|.+++..+.....-  ...+..-.+..+|+ ++.++.++.++.+|..+++..-...... . ..+
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~~~  145 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-PYY  145 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C-eEE
Confidence            34555677888888888888765332221  12223323333665 7778888888888987665433222211 0 011


Q ss_pred             eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc---ccceeEEEEeeCCCcEEEEeec--CCeEEEeeCCCCCc
Q 017194          107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH---SSICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGRP  181 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~  181 (375)
                      .....-.++ .+..++.++.+...|..+++.+-... ..   ...+..--...++  .+..+..  ++.+.-.|..+|..
T Consensus       146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYE-TPAPLSLSIYGSPAIASG--TVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEe-cCCccccccccCceeecc--eEEEecCCCcceEEEEEccCCcE
Confidence            111122233 44444477888888888887766544 11   1111111112233  4555555  66788888888887


Q ss_pred             ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      ....+...+....... .........+..         +..+..++.++.+...|..+++.+....
T Consensus       222 ~w~~~~~~~~~~~~~~-~~~~~~~~~v~v---------~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         222 KWSQKVSQTIGRTAIS-TTPAVDGGPVYV---------DGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             eeeeeeecccCccccc-ccccccCceEEE---------CCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            7775432111000000 000000111111         2233566677778888888776554443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.56  E-value=13  Score=27.85  Aligned_cols=35  Identities=11%  Similarity=0.035  Sum_probs=26.7

Q ss_pred             ccEEEEEEeec--CCC-CcEEEEecCCCeEEEEeCCCc
Q 017194          291 AAASCVAFSMF--GER-GKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       291 ~~v~~~~~s~~--~~~-~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      ..+..++|||.  +++ +-+|++...++.|.||.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            37999999962  223 347888899999999987753

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=85.22  E-value=37  Score=32.68  Aligned_cols=77  Identities=10%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec----chhhhhhhhc------ccccceeeeeecCCCCCc
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS----INNDLLIKNI------NLNKKVNWLCTTPTESEN  359 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~------~~~~~v~~~~~~~~~~~~  359 (375)
                      ...|.++...   .-+.+++..-.||+|.++|..+.+.....    .....+....      ..-..+..++|+| .+..
T Consensus       259 ~~~V~si~~~---~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~  334 (753)
T PF11635_consen  259 NKRVVSITSP---ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCS  334 (753)
T ss_pred             CCeEEEEEec---ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccce
Confidence            4568888776   66778999999999999999988655333    1112111111      1122456789999 7778


Q ss_pred             EEEeeCCCeEE
Q 017194          360 LVVCDTSKVVK  370 (375)
Q Consensus       360 l~s~~~dg~v~  370 (375)
                      ++.-..+|.+.
T Consensus       335 ~v~~~~~~~~~  345 (753)
T PF11635_consen  335 LVQIDEDGKTK  345 (753)
T ss_pred             EEEEecCCCce
Confidence            88888888754

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.56  E-value=25  Score=30.21  Aligned_cols=196  Identities=13%  Similarity=0.159  Sum_probs=105.5

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEe----CCCCe--EEEEcC-C---CeEEEEECCCC-Cccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK----SGNED--IIYVSS-G---KEVKSFDVHMP-ASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~--l~~~~~-d---~~i~iwd~~~~-~~~~~~   96 (375)
                      ..+++...+++-+.+||++ |+.++.+.  .+.++.+..-    -.|+.  |+.++. +   ..|++|.+... ..+..+
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            4567777777889999987 55566664  2344444432    23433  444443 2   47999987531 112222


Q ss_pred             cc----ccCCCcceeEEEE--cC-CCC-eEEEEeCCCcEEEEeCc---Cc----eeeeeEecCcccceeEEEEeeCCCcE
Q 017194           97 ES----YNYNKEEINQIVC--NP-KSS-FLACADDGGDVKIIDIR---QH----CLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        97 ~~----~~~~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ..    +......+..+|+  ++ ++. ++++...+|.+..|.+.   .+    +.++.|.  -...+..+....... .
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g-~  221 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETG-R  221 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTT-E
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccC-C
Confidence            11    0011234566666  33 354 56667788998888775   22    4577777  345788888888777 7


Q ss_pred             EEEeecCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          162 VISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      |..+-++.-|.-|+.+-..  ....+....       .. .....+-.|++-...  +..+-++++.-.+++..+|+...
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-------g~-~l~aDvEGlaly~~~--~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASAD-------GD-GLVADVEGLALYYGS--DGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBS-------SS-SB-S-EEEEEEEE-C--CC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeeccc-------cc-ccccCccceEEEecC--CCCeEEEEEcCCCCeEEEEecCC
Confidence            8999999888888876322  112221110       00 012456666664310  11233444444678899999885

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.33  E-value=7.6  Score=36.23  Aligned_cols=100  Identities=16%  Similarity=0.103  Sum_probs=54.8

Q ss_pred             EEEEEeCCCCeEEEEcCCC-----eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194           62 TSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC  136 (375)
Q Consensus        62 ~~l~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (375)
                      ..+.|-|+|..+++-+.||     .+.++....-+- .......+-...+..++|+-....++.+ ..+.+++|-..+-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence            3488999999999987664     566666442111 1111111123456667776655555554 44679999765432


Q ss_pred             eeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194          137 LYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      -.-... -.-..+.-+.|+|...+.+..
T Consensus       328 WYLK~e-~~ip~~s~vkwhpe~~nTl~f  354 (1243)
T COG5290         328 WYLKVE-RQIPGISYVKWHPEEKNTLLF  354 (1243)
T ss_pred             EEEEEe-ecCCCcceeeeccccCcEEEE
Confidence            211111 122345567888876643333

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=84.03  E-value=29  Score=30.57  Aligned_cols=31  Identities=13%  Similarity=0.320  Sum_probs=24.2

Q ss_pred             CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ..|.+++..+      ..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~------~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDP------SRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEET------TTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecC------CcCEEEEEeCCCcEEEEEEeC
Confidence            3488898887      568999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PLN02193 nitrile-specifier protein

Probab=83.38  E-value=34  Score=30.76  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             CCEEEEeCCC-----CcEEEEecccCceeeEeee----cCccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCcc
Q 017194           28 PGFVASSGED-----GCICWFDLRSKDVQLVTDV----GNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASW   93 (375)
Q Consensus        28 ~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~   93 (375)
                      +.+.+.|+.+     ..+..+|+.+.+-...-..    ....-.++. .-+++..+.|+.+     ..+..||+.+.+ +
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W  306 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKK-W  306 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCE-E
Confidence            4566677654     3577888776543221110    011111222 2345566666654     356788877542 3


Q ss_pred             ccccccc---CCCcceeEEEEcCCCCeEEEEeCC----CcEEEEeCcCce
Q 017194           94 RPLESYN---YNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHC  136 (375)
Q Consensus        94 ~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~  136 (375)
                      ..+....   ...... .++. -+++.++.++.+    ..+.+||+.+.+
T Consensus       307 ~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        307 FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCE
Confidence            3222110   001111 1222 256676666654    458899988764

>PF01011 PQQ: PQQ enzyme repeat family

Probab=83.15  E-value=4.3  Score=21.20  Aligned_cols=28  Identities=25%  Similarity=0.198  Sum_probs=24.3

Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      .++.++.+|.|.-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            3566699999999999999999998855

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>smart00564 PQQ beta-propeller repeat

Probab=81.80  E-value=4.1  Score=20.18  Aligned_cols=24  Identities=8%  Similarity=0.138  Sum_probs=19.7

Q ss_pred             eEEEEeCCCcEEEEeCcCceeeee
Q 017194          117 FLACADDGGDVKIIDIRQHCLYKS  140 (375)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~~~~~~  140 (375)
                      .++.++.+|.+..+|.++++.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            677788899999999988887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	375
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-04

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
           RLRGH+        + +  G++ S+ +D  IC +D+       R  D + +       V 
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 63  SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
            + +   +E +   V+  +++  +D     + +P  + + +  E+N +  NP S F LA 
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
                 V + D+R   L       H      VQ+ P     + S G D +L +WD SK
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
           RLRGH+        + +  G++ S+ +D  IC +D+       R  D + +       V 
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 63  SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
            + +   +E +   V+  +++  +D     + +P  + + +  E+N +  NP S F LA 
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
                 V + D+R   L       H      VQ+ P     + S G D +L +WD SK
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
           RLRGH+        + +  G++ S+ +D  IC +D+       R  D + +       V 
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 63  SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
            + +   +E +   V+  +++  +D     + +P  + + +  E+N +  NP S F LA 
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
                 V + D+R   L       H      VQ+ P     + S G D +L +WD SK
Sbjct: 298 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 9/178 (5%)
Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
           RLRGH+        + +  G + S+ +D  IC +D+       +  D + +       V 
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 63  SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
            + +   +E +   V+  +++  +D     + +P  S + +  E+N +  NP S F LA 
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
                 V + D+R   L       H      VQ+ P     + S G D +L +WD SK
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVT 62
           RLRGH+        + +  G + S+ +D  +C +D+ +        D + +    +  V 
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 63  SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
            + +   +E +   V+  +++  +D     + +P    + +  E+N +  NP S F LA 
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
                 V + D+R   L       H      V + P     + S G D +L +WD SK
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVT 62
           RLRGH+        + +  G + S+ +D  +C +D+ +        D + +    +  V 
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 63  SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
            + +   +E +   V+  +++  +D     + +P    + +  E+N +  NP S F LA 
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
                 V + D+R   L       H      V + P     + S G D +L +WD SK
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.89
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.86
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.84
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.83
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.83
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.82
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.78
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.77
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.71
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.7
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.67
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.59
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.5
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.5
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.48
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.44
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.38
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.34
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.32
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.27
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.26
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.21
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.2
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.18
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.14
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.13
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.1
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.03
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.02
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.99
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.98
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.97
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.96
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.85
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.85
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.84
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.84
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.8
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.8
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.69
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.57
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.53
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.51
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.46
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.37
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.32
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.28
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.2
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.2
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.15
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.95
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.92
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.9
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.87
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.87
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.86
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.79
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.76
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.76
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.66
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.65
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.65
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.62
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.58
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.58
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.51
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.51
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.44
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.39
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.36
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.09
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.08
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.99
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.97
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.78
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.4
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.27
3ott_A	758	Two-component system sensor histidine kinase; beta	95.87
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.69
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.61
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	95.49
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.09
3ott_A	758	Two-component system sensor histidine kinase; beta	94.96
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.87
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.81
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.42
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.08
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.0
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.69
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.97
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.82
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.28
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.75
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.95
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	88.7
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.13
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	87.87
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.49
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	83.1
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	83.0
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	82.9

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-54  Score=373.95  Aligned_cols=296  Identities=16%  Similarity=0.212  Sum_probs=266.7

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      ...+.+|.++|++++|+|+ +.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            5678999999999999999 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .+.   ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+. +|...|.++.++|++. ++++++.
T Consensus       180 ~~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~-~l~s~s~  254 (410)
T 1vyh_C          180 QGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASCSN  254 (410)
T ss_dssp             TSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEET
T ss_pred             CCC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCC-EEEEEcC
Confidence            865   3455667789999999999999999999999999999999999999999 9999999999999998 8999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc--------------cCCCCEEEEEecCCcEE
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML--------------DKTNKICVVAKGDGVVD  233 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~l~~~~~dg~i~  233 (375)
                      |+.|++||+++++....+..             |...|.+++|+|...+              ...+.+|++|+.|+.|+
T Consensus       255 D~~v~vwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~  321 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELRE-------------HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  321 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECC-------------CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             CCeEEEEECCCCceeeEecC-------------CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence            99999999999888777753             4678999999984110              01267899999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||++++                                        .++..+.+|...|.+++|+   |++++|++|+.
T Consensus       322 iwd~~~~----------------------------------------~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~  358 (410)
T 1vyh_C          322 MWDVSTG----------------------------------------MCLMTLVGHDNWVRGVLFH---SGGKFILSCAD  358 (410)
T ss_dssp             EEETTTT----------------------------------------EEEEEEECCSSCEEEEEEC---SSSSCEEEEET
T ss_pred             EEECCCC----------------------------------------ceEEEEECCCCcEEEEEEc---CCCCEEEEEeC
Confidence            9999874                                        4455778999999999999   99999999999


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ||.|++||+.++         +.+..+.+|...|++++|+| ++.+|++|+.||.|++|++.
T Consensus       359 D~~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          359 DKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             TTEEEEECCTTS---------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred             CCeEEEEECCCC---------ceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence            999999999987         66677889999999999999 99999999999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.6e-53  Score=350.34  Aligned_cols=296  Identities=17%  Similarity=0.239  Sum_probs=259.2

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .+..++|++|.+.|++++|+|+ +++|++|+.||+|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            3456789999999999999999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      ||+.+++   .+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+. +|...|.+++|+|.+..+|+
T Consensus        82 wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           82 FNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEE
T ss_pred             EECCCCc---EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEE
Confidence            9999764   34556678999999999999999999999999999999877 4556777 99999999999995444899


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +|+.|++|++||++++.....+..+            +...+..+.+.|    .+++.+|++++.|+.|++||++++   
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~----~~~~~~l~s~s~D~~i~iWd~~~~---  218 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLTTG------------QERGVNYVDYYP----LPDKPYMITASDDLTIKIWDYQTK---  218 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECC------------CTTCEEEEEECC----STTCCEEEEEETTSEEEEEETTTT---
T ss_pred             EEeCCCeEEEEECCCCCccceeccC------------CcCcEEEEEEEE----cCCCCEEEEEcCCCeEEEEeCCCC---
Confidence            9999999999999988887777654            456788999987    346789999999999999999874   


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                           +++..+.+|...|.+++|+   |++++|++|+.||.|++||+.
T Consensus       219 -------------------------------------~~~~~~~~h~~~v~~~~~~---p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          219 -------------------------------------SCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             -------------------------------------EEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETT
T ss_pred             -------------------------------------ccceeeCCCCCCEEEEEEC---CCCCEEEEEcCCCeEEEEECC
Confidence                                                 4556788999999999999   999999999999999999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCc-EEEeeCCCeEEEEec
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN-LVVCDTSKVVKVYSI  374 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~v~iw~~  374 (375)
                      ++         +++..+..|...+.+++++|.+++. +++|+.| .+.+|++
T Consensus       259 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~  300 (304)
T 2ynn_A          259 TY---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSL  300 (304)
T ss_dssp             TC---------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEEC
T ss_pred             CC---------ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEe
Confidence            98         5666777889999999999944444 6666555 4777765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9e-54  Score=356.03  Aligned_cols=292  Identities=16%  Similarity=0.218  Sum_probs=259.8

Q ss_pred             CCeeeecCCCceeEEEEecC---CCCEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194            7 KPRRLRGHKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE   81 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~   81 (375)
                      ..+.+++|.++|++++|+|+   ++.+|+||+.|++|+||++.+++.  ...+.+|...|.+++|++++..+++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            34667899999999999985   257899999999999999987654  4567899999999999999999999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      |++||+.+++..   ..+..|...+.+++|+|++++|++++.||.|++||+++++....+. .|...+.+++|+|+++ +
T Consensus       104 i~lWd~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~-~  178 (321)
T 3ow8_A          104 IRLWDLENGKQI---KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGK-Y  178 (321)
T ss_dssp             EEEEETTTTEEE---EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSS-E
T ss_pred             EEEEECCCCCEE---EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCC-E
Confidence            999999976543   4445567889999999999999999999999999999999988888 8999999999999998 7


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      |++++.|+.|++||+++++.+..+..             |...|.+++|+|      ++++|++++.||.|++||+++. 
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~-------------h~~~v~~l~~sp------d~~~l~s~s~dg~i~iwd~~~~-  238 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEG-------------HAMPIRSLTFSP------DSQLLVTASDDGYIKIYDVQHA-  238 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECC-------------CSSCCCEEEECT------TSCEEEEECTTSCEEEEETTTC-
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcc-------------cCCceeEEEEcC------CCCEEEEEcCCCeEEEEECCCc-
Confidence            99999999999999999988887763             467899999999      8999999999999999999864 


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                             .....+.+|...|.+++|+   |++++|++++.|+.|++||
T Consensus       239 ---------------------------------------~~~~~~~~h~~~v~~~~~s---p~~~~l~s~s~D~~v~iwd  276 (321)
T 3ow8_A          239 ---------------------------------------NLAGTLSGHASWVLNVAFC---PDDTHFVSSSSDKSVKVWD  276 (321)
T ss_dssp             ---------------------------------------CEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEE
T ss_pred             ---------------------------------------ceeEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEe
Confidence                                                   3345778999999999999   9999999999999999999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +.++         +.+..+.+|...|.+++|+| ++++|++++.||.|++||++
T Consensus       277 ~~~~---------~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          277 VGTR---------TCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTTT---------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEECC
T ss_pred             CCCC---------EEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence            9998         55667788999999999999 99999999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4e-53  Score=355.65  Aligned_cols=295  Identities=15%  Similarity=0.214  Sum_probs=261.8

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      ....++|++|.++|++++|+|+ +++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             chhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            3445689999999999999999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCc-ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      |++.+... ......+.+|...|.++.|++++ .+++++.|+.|++||+++++.+..+. +|...|.+++|+|++. +++
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~  200 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTR-LFV  200 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCC-EEE
Confidence            99986532 23445667889999999999887 48899999999999999999999999 9999999999999998 899


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +|+.|+.|++||++++++...+..             |...|.+++|+|      ++++|++|+.||.|++||+++....
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~-------------h~~~v~~v~~~p------~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTG-------------HESDINAICFFP------NGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECC-------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcC-------------CcCCEEEEEEcC------CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            999999999999999988877763             467899999999      7999999999999999999874221


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                      .                                      ......+...|.+++|+   |+|++|++|+.||.|++||+.
T Consensus       262 ~--------------------------------------~~~~~~~~~~v~~~~~s---~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          262 M--------------------------------------TYSHDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             E--------------------------------------EECCTTCCSCEEEEEEC---TTSSEEEEEETTSEEEEEETT
T ss_pred             E--------------------------------------EEccCCcccceEEEEEC---CCCCEEEEECCCCeEEEEEcc
Confidence            1                                      11122344579999999   999999999999999999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +.         +.+..+.+|...|.+++|+| ++++|++|+.||.|++||
T Consensus       301 ~~---------~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          301 KA---------DRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TC---------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             cC---------cEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence            87         55567789999999999999 999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.2e-53  Score=381.12  Aligned_cols=348  Identities=15%  Similarity=0.139  Sum_probs=274.4

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      +.....+.+|.+.|++++|+|++...|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++++.|++|++
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            45567789999999999999994346999999999999999999989999999999999999999999999999999999


Q ss_pred             EECCCCCccccccc----ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee---------------------
Q 017194           85 FDVHMPASWRPLES----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK---------------------  139 (375)
Q Consensus        85 wd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------  139 (375)
                      ||+.+++....+..    ..+|...|.+++|+|++++|++++.|++|++||+++++.+.                     
T Consensus       217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            99987765443321    12689999999999999999999999999999998765543                     


Q ss_pred             ----------------------eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCC------
Q 017194          140 ----------------------SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE------  191 (375)
Q Consensus       140 ----------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~------  191 (375)
                                            .+. +|...|++++|+|+++ +|++++.|++|++||+.+++....+...+..      
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRY-GHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK  374 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence                                  234 7889999999999998 7999999999999999876543321000000      


Q ss_pred             -------------------------CCC------------------CC--------------------CcccCCCceeEE
Q 017194          192 -------------------------NNG------------------NA--------------------GQCYNPAFVHAI  208 (375)
Q Consensus       192 -------------------------~~~------------------~~--------------------~~~~~~~~v~~~  208 (375)
                                               ...                  ..                    ....+...+.++
T Consensus       375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v  454 (611)
T 1nr0_A          375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV  454 (611)
T ss_dssp             ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred             ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence                                     000                  00                    000123456788


Q ss_pred             eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee------eeecCCcceeEe
Q 017194          209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHL  282 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~------~~~~~~~~~~~~  282 (375)
                      +|+|      ++++|++|+.|+.|++||+.+..............+.+++|+|||+++++.+      .++....  .++
T Consensus       455 a~sp------dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~--~~~  526 (611)
T 1nr0_A          455 ALSN------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN--FEL  526 (611)
T ss_dssp             EECT------TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT--TEE
T ss_pred             EEeC------CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC--Cce
Confidence            8888      8999999999999999999875432211233456788999999999998632      2332221  222


Q ss_pred             eee--ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhh-hhhccc-ccceeeeeecCCCCC
Q 017194          283 DYS--VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL-IKNINL-NKKVNWLCTTPTESE  358 (375)
Q Consensus       283 ~~~--~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~  358 (375)
                      ...  +.+|...|.+++|+   |||++|++|+.|++|++||+..+.        ... ..+.+| ...|.+++|+| +++
T Consensus       527 ~~~~~~~~H~~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~~--------~~~~~~~~~h~~~~v~~v~fs~-d~~  594 (611)
T 1nr0_A          527 AHTNSWTFHTAKVACVSWS---PDNVRLATGSLDNSVIVWNMNKPS--------DHPIIIKGAHAMSSVNSVIWLN-ETT  594 (611)
T ss_dssp             SCCCCCCCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCTT--------SCCEEETTSSTTSCEEEEEEEE-TTE
T ss_pred             eeeeeeeecccceeEEEEC---CCCCEEEEEECCCcEEEEECCCcc--------cccchhhccCcccCeeEEEEcC-CCE
Confidence            222  34599999999999   999999999999999999998863        122 456688 89999999999 887


Q ss_pred             cEEEeeCCCeEEEEecC
Q 017194          359 NLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       359 ~l~s~~~dg~v~iw~~~  375 (375)
                       |++++.|++|++|+++
T Consensus       595 -l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          595 -IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             -EEEEETTSCEEEEECC
T ss_pred             -EEEecCCCCEEEEecc
Confidence             9999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.5e-52  Score=350.22  Aligned_cols=295  Identities=17%  Similarity=0.263  Sum_probs=260.4

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      +..++|++|.++|++++|+|+ +++|+||+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            456789999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCc---ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC--CCc
Q 017194           86 DVHMPAS---WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW--KPW  160 (375)
Q Consensus        86 d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~  160 (375)
                      ++.....   ......+..|...|.+++|+|++..|++++.|++|++||+++++.+..+. +|...|.+++|+|+  +. 
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~-  211 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGN-  211 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCC-
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCC-
Confidence            9875321   23344556789999999999999999999999999999999999999999 99999999999885  45 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      +|++|+.||.|++||+++++++..+..             |...|.+++|+|      ++.+|++++.|+.|++||+++.
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~-------------h~~~v~~v~~~p------~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFET-------------HESDVNSVRYYP------SGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECC-------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecC-------------CCCCeEEEEEeC------CCCEEEEEeCCCeEEEEECCCC
Confidence            899999999999999999998887763             468899999999      7999999999999999999864


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      ...                                      .......+...+.+++|+   |++++|++|+.|+.|++|
T Consensus       273 ~~~--------------------------------------~~~~~~~~~~~~~~~~~s---~~g~~l~~g~~d~~i~vw  311 (354)
T 2pbi_B          273 REV--------------------------------------AIYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVW  311 (354)
T ss_dssp             EEE--------------------------------------EEECCTTCCSCEEEEEEC---TTSSEEEEEETTSCEEEE
T ss_pred             cEE--------------------------------------EEEcCCCcccceeEEEEe---CCCCEEEEEECCCcEEEE
Confidence            211                                      111122334578999999   999999999999999999


Q ss_pred             eCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          321 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       321 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |+.++         ..+..+.+|...|.+++|+| ++++|++++.||.|++|+
T Consensus       312 d~~~~---------~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          312 DVLKG---------SRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ETTTC---------SEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred             ECCCC---------ceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence            99887         45566789999999999999 999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-52  Score=354.07  Aligned_cols=293  Identities=16%  Similarity=0.200  Sum_probs=242.2

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCC------CCcEEEEecccCce----eeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGE------DGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~------d~~i~iw~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      ...|++.|++++|+|| |++||+|+.      |+.|++|+..++..    ......|...|.+++|+|++. +++++.||
T Consensus        38 p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg  115 (357)
T 4g56_B           38 PACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG  115 (357)
T ss_dssp             --CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred             cccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence            4569999999999999 899999997      77899999877654    334456889999999999986 55678899


Q ss_pred             eEEEEECCCCCcccccc-cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           81 EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      +|++||+.+++...... ...+|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|...|++++|+|+++
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKD  194 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCS
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCC
Confidence            99999998765433322 344788999999999999999999999999999999999999999 9999999999999987


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .++++++.|+.|++||++++++...+....           +...+.+++|+|.     ++.+|++|+.|+.|++||+++
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~-----~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCA-----------SDTIPTSVTWHPE-----KDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTT-----------CCSCEEEEEECTT-----STTEEEEEESSSCEEEEESSC
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeecc-----------ccccccchhhhhc-----ccceEEEeecccceeEEECCC
Confidence            679999999999999999988776654321           4567999999984     467899999999999999987


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC-cEEEEecCCCeEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVK  318 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~s~~~dg~i~  318 (375)
                      +                                        +.+..+.+|...|++++|+   |++ ++|++|+.|++|+
T Consensus       259 ~----------------------------------------~~~~~~~~~~~~v~~l~~s---p~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          259 P----------------------------------------DSAQTSAVHSQNITGLAYS---YHSSPFLASISEDCTVA  295 (357)
T ss_dssp             G----------------------------------------GGCEEECCCSSCEEEEEEC---SSSSCCEEEEETTSCEE
T ss_pred             C----------------------------------------cEeEEEeccceeEEEEEEc---CCCCCEEEEEeCCCEEE
Confidence            4                                        2334677899999999999   776 6899999999999


Q ss_pred             EEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |||+++++         ++ ...+|.+.|++++|+|.++++|++++.||+|++|+++
T Consensus       296 iwd~~~~~---------~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          296 VLDADFSE---------VF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EECTTSCE---------EE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEECCCCc---------Ee-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            99999873         33 3348999999999999789999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.1e-52  Score=349.10  Aligned_cols=290  Identities=14%  Similarity=0.138  Sum_probs=242.3

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-----------ceeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-----------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      ..|...|.+++|+|| |++|++++ |+++++||....           ........+...|.+++|+|++ .|++++.||
T Consensus        27 ~~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg  103 (344)
T 4gqb_B           27 ACMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG  103 (344)
T ss_dssp             SSCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred             ccccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence            457788999999999 89998887 678888873211           1122223467889999999985 688999999


Q ss_pred             eEEEEECCCCCcccccc-cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           81 EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      +|++||+++++...... ...+|...|.+++|+|++++|++|+.|++|++||+++++.+..+. +|...|.+++|+|++.
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPHKD  182 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSSCT
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEecCCCC
Confidence            99999999876544433 345789999999999999999999999999999999999999999 9999999999999987


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .+|++++.|++|++||++++++...+....           +...+.+++|+|.     ++++|++|+.||.|++||+++
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~p~-----~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKPASQIGCSA-----------PGYLPTSLAWHPQ-----QSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSCEEECC---------------CCCEEEEEECSS-----CTTEEEEEETTSEEEEEESCC
T ss_pred             Cceeeeccccccccccccccceeeeeecce-----------eeccceeeeecCC-----CCcceEEeccCCcEEEEECCC
Confidence            689999999999999999998887765331           3456899999985     677899999999999999987


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC-cEEEEecCCCeEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVK  318 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~s~~~dg~i~  318 (375)
                      +                                        +++..+.+|...|++++|+   |++ ++|++|+.|++|+
T Consensus       247 ~----------------------------------------~~~~~~~~h~~~v~~v~fs---p~g~~~lasgs~D~~i~  283 (344)
T 4gqb_B          247 T----------------------------------------SCVLSSAVHSQCVTGLVFS---PHSVPFLASLSEDCSLA  283 (344)
T ss_dssp             ------------------------------------------CCEEEECCSSCEEEEEEC---SSSSCCEEEEETTSCEE
T ss_pred             C----------------------------------------cEEEEEcCCCCCEEEEEEc---cCCCeEEEEEeCCCeEE
Confidence            4                                        4455788999999999999   887 5899999999999


Q ss_pred             EEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC-cEEEeeCCCeEEEEecC
Q 017194          319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~iw~~~  375 (375)
                      |||+.++         +++ .+.+|.+.|.+++|+| +++ +|++++.|++|++|+++
T Consensus       284 vwd~~~~---------~~~-~~~~H~~~V~~v~~sp-~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          284 VLDSSLS---------ELF-RSQAHRDFVRDATWSP-LNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             EECTTCC---------EEE-EECCCSSCEEEEEECS-SSTTEEEEEETTSCEEEEECC
T ss_pred             EEECCCC---------cEE-EEcCCCCCEEEEEEeC-CCCeEEEEEcCCCeEEEEECC
Confidence            9999987         332 4578999999999999 665 56789999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-52  Score=349.85  Aligned_cols=324  Identities=13%  Similarity=0.135  Sum_probs=256.5

Q ss_pred             CCcCCCCCeeeecCCC-ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceee---EeeecCccEEEEEEeCCCCeEEEE
Q 017194            1 MTDAEAKPRRLRGHKA-TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL---VTDVGNGPVTSLCFKSGNEDIIYV   76 (375)
Q Consensus         1 m~~~~~~~~~l~~h~~-~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~l~~~   76 (375)
                      |.+....+.++++|.+ .|++++|+|+ +++||+|+.|++|+|||+.++....   ...+|...|.+++|+|++++|+++
T Consensus         1 ~~~~~~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~   79 (345)
T 3fm0_A            1 MKDSLVLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA   79 (345)
T ss_dssp             ---CEEEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCccEEEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE
Confidence            5667778889999998 9999999999 8999999999999999998876432   235799999999999999999999


Q ss_pred             cCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc---eeeeeEecCcccceeEEE
Q 017194           77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQ  153 (375)
Q Consensus        77 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~  153 (375)
                      +.|+.+++|++.++. ...+..+.+|...|.+++|+|++++|++++.|+.|++||++++   +.+..+. +|...|.+++
T Consensus        80 s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~  157 (345)
T 3fm0_A           80 SFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVV  157 (345)
T ss_dssp             ETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEE
T ss_pred             ECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEE
Confidence            999999999988643 3456677889999999999999999999999999999999865   3456677 8999999999


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcc--eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV  231 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~  231 (375)
                      |+|+++ +|++++.|+.|++||.++++..  ..+. +            |...|.+++|+|      ++++|++++.|+.
T Consensus       158 ~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~------------h~~~v~~l~~sp------~g~~l~s~s~D~~  217 (345)
T 3fm0_A          158 WHPSQE-LLASASYDDTVKLYREEEDDWVCCATLE-G------------HESTVWSLAFDP------SGQRLASCSDDRT  217 (345)
T ss_dssp             ECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEEC-C------------CSSCEEEEEECT------TSSEEEEEETTSC
T ss_pred             ECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEec-C------------CCCceEEEEECC------CCCEEEEEeCCCe
Confidence            999998 7999999999999999877543  3333 2            578899999999      8999999999999


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEE
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLIS  310 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s  310 (375)
                      |++||...........        ...                 ......++..+.+ |...|.+++|+   |++..|++
T Consensus       218 v~iW~~~~~~~~~~~~--------~~~-----------------~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~l~s  269 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVA--------CSG-----------------SDPSWKCICTLSGFHSRTIYDIAWC---QLTGALAT  269 (345)
T ss_dssp             EEEEEEECTTCTTCCC--------CC--------------------CEEEEEEEECSSCSSCEEEEEEC---TTTCCEEE
T ss_pred             EEEeccccCCCCccce--------eec-----------------cCCccceeEEecCCCCCcEEEEEEe---cCCCEEEE
Confidence            9999975321110000        000                 0112244445555 88999999999   99999999


Q ss_pred             ecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          311 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       311 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++.|+.|++|+....................+|...|.+++|+|.+..+|++|+.||.|++|++.
T Consensus       270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            99999999999876531100000001122457999999999999333689999999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.5e-52  Score=354.49  Aligned_cols=307  Identities=15%  Similarity=0.191  Sum_probs=256.4

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ...++|++|.++|++++|+|+ +++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++++.|+.+++|
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             EEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            345789999999999999998 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCC----cccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeE-----ecCcccceeEEEEe
Q 017194           86 DVHMPA----SWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSL-----RAGHSSICSSVQFI  155 (375)
Q Consensus        86 d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~  155 (375)
                      ++.+..    .......+.+|.+.|.++.|.|+ +..|++|+.|++|++||+++++.+..+     . +|...|.+++|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~  214 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS-GHTADVLSLSIN  214 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS-SCCSCEEEEEEC
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC-CCccCeEEEEee
Confidence            997532    22344567789999999999996 457999999999999999999888777     4 789999999998


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                      +.+..+|++|+.|++|++||++. ++.+..+. +            |...|.+++|+|      ++++|++|+.||.|++
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~------------h~~~v~~v~~~p------~~~~l~s~s~D~~i~l  275 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYH-G------------HEGDINSVKFFP------DGQRFGTGSDDGTCRL  275 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-C------------CSSCCCEEEECT------TSSEEEEECSSSCEEE
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEEC-C------------cCCCeEEEEEec------CCCeEEEEcCCCeEEE
Confidence            84333899999999999999984 45555554 3            578899999999      8999999999999999


Q ss_pred             EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND  314 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d  314 (375)
                      ||++++..........                                 .....+...|.+++|+   |+|++|++|+.|
T Consensus       276 wd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~v~~~~~s---~~g~~l~~g~~d  319 (380)
T 3iz6_a          276 FDMRTGHQLQVYNREP---------------------------------DRNDNELPIVTSVAFS---ISGRLLFAGYSN  319 (380)
T ss_dssp             EETTTTEEEEEECCCC---------------------------------SSSCCSSCSCSEEEEC---SSSSEEEEECTT
T ss_pred             EECCCCcEEEEecccc---------------------------------cccccccCceEEEEEC---CCCCEEEEEECC
Confidence            9999864332211100                                 0111233458899999   999999999999


Q ss_pred             CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          315 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       315 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |.|++||+..++...     .+.....+|.+.|.+++|+| ++++|++|+.||.|++|+++
T Consensus       320 g~i~vwd~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          320 GDCYVWDTLLAEMVL-----NLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SCEEEEETTTCCEEE-----EECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECC
T ss_pred             CCEEEEECCCCceEE-----EEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEecC
Confidence            999999998874321     11112257999999999999 99999999999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.9e-51  Score=338.14  Aligned_cols=294  Identities=20%  Similarity=0.258  Sum_probs=257.8

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ....++.+|.++|++++|+|+ +++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            345678899999999999998 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      |+++++   .+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .|...|.+++|+|+++ +|+++
T Consensus        93 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~  167 (312)
T 4ery_A           93 DVSSGK---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSS  167 (312)
T ss_dssp             ETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEE
T ss_pred             ECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCC-EEEEE
Confidence            998764   344566788999999999999999999999999999999999999998 8999999999999998 79999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.|+.|++||+++++.+..+...            +...+..++|+|      ++++|++++.||.|++||+++++    
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~------------~~~~~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~----  225 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSP------NGKYILAATLDNTLKLWDYSKGK----  225 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCS------------SCCCEEEEEECT------TSSEEEEEETTTEEEEEETTTTE----
T ss_pred             eCCCcEEEEECCCCceeeEEecc------------CCCceEEEEECC------CCCEEEEEcCCCeEEEEECCCCc----
Confidence            99999999999998887776543            456789999999      79999999999999999998752    


Q ss_pred             ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEE--EEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC--VAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                          .+..+.+|...+..  ..+++  +++.+|++|+.||.|++||+.
T Consensus       226 ------------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          226 ------------------------------------CLKTYTGHKNEKYCIFANFSV--TGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             ------------------------------------EEEEECSSCCSSSCCCEEEEC--SSSCEEEECCTTSCEEEEETT
T ss_pred             ------------------------------------EEEEEEecCCceEEEEEEEEe--CCCcEEEEECCCCEEEEEECC
Confidence                                                33345555443222  23332  678999999999999999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee--CCCeEEEEecC
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD--TSKVVKVYSIS  375 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~iw~~~  375 (375)
                      ++         +++..+.+|...|.+++|+| ++++|++++  .|+.|++|+..
T Consensus       268 ~~---------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          268 TK---------EIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             TC---------CEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred             Cc---------hhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence            98         66677889999999999999 889999987  69999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-49  Score=331.16  Aligned_cols=299  Identities=16%  Similarity=0.212  Sum_probs=249.6

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-----ceeeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-----DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      .....+|++|.++|++++|+|+++++|++|+.|++|++|++...     .++..+.+|...|.+++|+|++++|++++.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            34556899999999999999975689999999999999998643     3467788999999999999999999999999


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      ++|++||+++++   .+..+.+|...|.+++|+|++++|++++.|+.|++||++ ++.+..+. +|...|.+++|.|...
T Consensus        87 ~~v~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           87 KTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             SEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC--
T ss_pred             CEEEEEECCCCC---eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCC
Confidence            999999999764   445667789999999999999999999999999999996 55667787 8999999999998532


Q ss_pred             -----cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          160 -----WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       160 -----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                           ..+++++.|+.|++||+++.+....+. +            |...|.+++|+|      ++++|++++.||.|++
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~------------h~~~v~~~~~sp------~g~~l~s~~~dg~i~i  222 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-G------------HNSNINTLTASP------DGTLIASAGKDGEIML  222 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEEEEC-C------------CCSCEEEEEECT------TSSEEEEEETTCEEEE
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhheeec-C------------CCCcEEEEEEcC------CCCEEEEEeCCCeEEE
Confidence                 269999999999999999887766665 3            578999999999      8999999999999999


Q ss_pred             EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND  314 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d  314 (375)
                      ||+.+.                                        +.+..+.. ...|.+++|+   |++.+|++++.+
T Consensus       223 wd~~~~----------------------------------------~~~~~~~~-~~~v~~~~~s---p~~~~la~~~~~  258 (319)
T 3frx_A          223 WNLAAK----------------------------------------KAMYTLSA-QDEVFSLAFS---PNRYWLAAATAT  258 (319)
T ss_dssp             EETTTT----------------------------------------EEEEEEEC-CSCEEEEEEC---SSSSEEEEEETT
T ss_pred             EECCCC----------------------------------------cEEEEecC-CCcEEEEEEc---CCCCEEEEEcCC
Confidence            999974                                        22334443 4679999999   999999988765


Q ss_pred             CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          315 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       315 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                       .+++|++........... ........|...+.+++|+| +|++|++|+.||.|++|++
T Consensus       259 -~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          259 -GIKVFSLDPQYLVDDLRP-EFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             -EEEEEEETTEEEEEEECC-CCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred             -CcEEEEeCcCeeeeccCc-cccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEE
Confidence             599999988643321110 11112235677899999999 9999999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-49  Score=332.89  Aligned_cols=308  Identities=14%  Similarity=0.116  Sum_probs=240.5

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEe-ee-cCccEEEEEEeCCCCeEEEEcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVT-DV-GNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~-~~-~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      +.+.+++|++|.++|++++|+|+   +||+|+.|++|++||+..+.  ....+ .. |...|.+++|+|++++|++++.|
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            45567889999999999999975   99999999999999998753  34455 34 99999999999999999999999


Q ss_pred             CeEEEEECCCCC----cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC----ceeeeeEecCcccceeE
Q 017194           80 KEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----HCLYKSLRAGHSSICSS  151 (375)
Q Consensus        80 ~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~  151 (375)
                      ++|++||++...    ....+..+.+|...|.+++|+|++++|++++.|+.|++||++.    .+.+..+. +|...|.+
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~  158 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKH  158 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEE
Confidence            999999986432    2244566778999999999999999999999999999999943    24567788 89999999


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      ++|+|++. +|++++.|++|++||..++  +++..+. +            |...|.+++|+|.    .++.+|++++.|
T Consensus       159 v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~------------h~~~v~~~~~~~~----~~~~~l~s~s~D  220 (330)
T 2hes_X          159 VIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLN-G------------HEGTVWSSDFDKT----EGVFRLCSGSDD  220 (330)
T ss_dssp             EEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-C------------CSSCEEEEEECCS----SSSCEEEEEETT
T ss_pred             EEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEcc-C------------CCCcEEEEEecCC----CCeeEEEEEeCC
Confidence            99999998 8999999999999998766  4455554 3            5789999999991    126789999999


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYL  308 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l  308 (375)
                      +.|++||+.+.....                                .....+...+.+ |...|.+++|+   +++ +|
T Consensus       221 ~~v~iw~~~~~~~~~--------------------------------~~~~~~~~~~~~~h~~~v~~v~~s---~~~-~l  264 (330)
T 2hes_X          221 STVRVWKYMGDDEDD--------------------------------QQEWVCEAILPDVHKRQVYNVAWG---FNG-LI  264 (330)
T ss_dssp             SCEEEEEEEEECTTS--------------------------------CEEEEEEEECCSCCSSCEEEEEEC---TTS-CE
T ss_pred             CeEEEEEecCCCccc--------------------------------cceeEEeeecccccccceEEEEEc---CCC-EE
Confidence            999999987531100                                111233344544 89999999998   665 89


Q ss_pred             EEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc-ceeeeeecCC-CCCcEEEeeCCCeEEEEecC
Q 017194          309 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPT-ESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       309 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++++.||.|++||..+++..      .......+|.. .|.+++|+|. ++++|++++.||.|++|+++
T Consensus       265 ~s~~~dg~v~iw~~~~~~~~------~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          265 ASVGADGVLAVYEEVDGEWK------VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEETTSCEEEEEEETTEEE------EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEeCCCEEEEEEcCCCceE------EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            99999999999998775311      11123356776 8999999985 57899999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-49  Score=357.85  Aligned_cols=337  Identities=16%  Similarity=0.160  Sum_probs=269.9

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCC--
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--   79 (375)
                      +++....|.+|.+.|++++|+|+ +++||+|+.|++|+|||+.+++  ....+..|..+|.+++|+|++++|++++.+  
T Consensus        48 ~~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           48 SLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             CSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CcccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            45677889999999999999999 8999999999999999997554  355778899999999999999999998865  


Q ss_pred             --CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee
Q 017194           80 --KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        80 --~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  156 (375)
                        +.|++||..     .....+.+|...|.+++|+|++. .|++++.|++|++||..+++.+..+. +|...|.+++|+|
T Consensus       127 ~~~~v~~wd~~-----~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fsp  200 (611)
T 1nr0_A          127 RFGHVFLFDTG-----TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNP  200 (611)
T ss_dssp             CSEEEEETTTC-----CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECT
T ss_pred             ceeEEEEeeCC-----CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECC
Confidence              378888743     23455678999999999999987 59999999999999999999999999 9999999999999


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                      +++ +|++++.|++|++||+.+++....+...      ......|...|.+++|+|      ++++|++++.|+.|++||
T Consensus       201 dg~-~las~s~D~~i~lwd~~~g~~~~~~~~~------~~~~~~h~~~V~~v~~sp------dg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          201 DGS-LFASTGGDGTIVLYNGVDGTKTGVFEDD------SLKNVAHSGSVFGLTWSP------DGTKIASASADKTIKIWN  267 (611)
T ss_dssp             TSS-EEEEEETTSCEEEEETTTCCEEEECBCT------TSSSCSSSSCEEEEEECT------TSSEEEEEETTSEEEEEE
T ss_pred             CCC-EEEEEECCCcEEEEECCCCcEeeeeccc------cccccccCCCEEEEEECC------CCCEEEEEeCCCeEEEEe
Confidence            998 8999999999999999998877766321      000112678999999999      899999999999999999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeee---eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +.+++.................+..++..++...   ....++.........+.+|...|.+++|+   |+|++|++++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s---pdg~~l~s~s~  344 (611)
T 1nr0_A          268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS---ADGKTLFSADA  344 (611)
T ss_dssp             TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC---TTSSEEEEEET
T ss_pred             CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe---CCCCEEEEEeC
Confidence            9987665544322211122222333555554421   11111222223556778999999999999   99999999999


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhh-hcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |+.|++||+.+++.         ... ..+|...|.+++|++ ++ .|++++.|+.+++|++
T Consensus       345 D~~v~~Wd~~~~~~---------~~~~~~~h~~~v~~~~~s~-~~-~l~s~s~d~~v~~w~~  395 (611)
T 1nr0_A          345 EGHINSWDISTGIS---------NRVFPDVHATMITGIKTTS-KG-DLFTVSWDDHLKVVPA  395 (611)
T ss_dssp             TSCEEEEETTTCCE---------EECSSCSCSSCEEEEEECT-TS-CEEEEETTTEEEEECS
T ss_pred             CCcEEEEECCCCce---------eeecccCCcceEEEEEECC-CC-cEEEEEcCCceEEeec
Confidence            99999999998742         222 257999999999997 65 7899999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-49  Score=338.23  Aligned_cols=303  Identities=16%  Similarity=0.192  Sum_probs=249.1

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecC------------------ccEEEEEEeCCCCeEE
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN------------------GPVTSLCFKSGNEDII   74 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~------------------~~v~~l~~~~~~~~l~   74 (375)
                      +|.+.|++++|+|+ +++||+|+ ++++++|++.+++.+..+..|.                  ..|.+++|+|++++|+
T Consensus        62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            69999999999999 89999987 6899999999999887776543                  2499999999999999


Q ss_pred             EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194           75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      +++.|+.|++||+.+++   .+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+.  +...+.+++|
T Consensus       140 s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~  214 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAV  214 (393)
T ss_dssp             EEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEE
T ss_pred             EEcCCCeEEEEECCCCc---EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEE
Confidence            99999999999998653   445567789999999999999999999999999999999999888887  6678999999


Q ss_pred             ee-CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          155 IP-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       155 ~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      +| ++. +|++++.|+.|++||+++++.+..+....      .....|...|.+++|+|      ++++|++++.||.|+
T Consensus       215 ~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~------~~~~~h~~~v~~v~~~~------~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          215 SPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSEN------ESGTGHKDSVYSVVFTR------DGQSVVSGSLDRSVK  281 (393)
T ss_dssp             CSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECT------TSSEEEEEETTSEEE
T ss_pred             ECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccc------cCCCCCCCCEEEEEECC------CCCEEEEEeCCCEEE
Confidence            99 666 89999999999999999988777664210      00112567899999999      799999999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||+++.........                            .....+...+.+|...|.+++|+   |++++|++|+.
T Consensus       282 ~wd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l~sgs~  330 (393)
T 1erj_A          282 LWNLQNANNKSDSKT----------------------------PNSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSK  330 (393)
T ss_dssp             EEEC-------------------------------------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEET
T ss_pred             EEECCCCCCcccccC----------------------------CCCCcceEEEecccCcEEEEEEC---CCCCEEEEEeC
Confidence            999986432211100                            01123445677999999999999   89999999999


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC-----CCCCcEEEeeCCCeEEEEecC
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP-----TESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |+.|++||+.++         +.+..+.+|...|.+++|++     +++++|++|+.||.|++|+++
T Consensus       331 D~~v~iwd~~~~---------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          331 DRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             TSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCeEEEEECCCC---------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            999999999998         55567789999999999886     267899999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-48  Score=352.67  Aligned_cols=324  Identities=19%  Similarity=0.257  Sum_probs=277.0

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +++.+..+.+|...|++++|+|+ ++.|++++.|+.|++|+.. ++....+.+|...|.+++|+|+++.|++++.|+.|+
T Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~  328 (577)
T 2ymu_A          251 NGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK  328 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence            44567788999999999999999 8999999999999999964 677888899999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +||...    ..+..+.+|...+.+++|+|++++|++++.|+.|++||. +++.+..+. +|...|++++|+|+++ +|+
T Consensus       329 ~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~-~l~  401 (577)
T 2ymu_A          329 LWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQ-TIA  401 (577)
T ss_dssp             EEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSS-CEE
T ss_pred             EEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCC-EEE
Confidence            999874    234456678899999999999999999999999999995 677788888 9999999999999998 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||. +++.+..+..             |...|.+++|+|      ++++|++++.|+.|++||.... ..
T Consensus       402 ~~~~d~~v~~~~~-~~~~~~~~~~-------------~~~~v~~~~~s~------d~~~l~~~~~d~~v~~w~~~~~-~~  460 (577)
T 2ymu_A          402 SASDDKTVKLWNR-NGQLLQTLTG-------------HSSSVWGVAFSP------DDQTIASASDDKTVKLWNRNGQ-LL  460 (577)
T ss_dssp             EEETTSEEEEECT-TCCEEEEEEC-------------CSSCEEEEEECT------TSSEEEEEETTSEEEEEETTSC-EE
T ss_pred             EEeCCCEEEEEeC-CCCEEEEecC-------------CCCCeEEEEECC------CCCEEEEEcCCCEEEEEECCCC-EE
Confidence            9999999999995 4666666653             468899999999      8999999999999999997543 32


Q ss_pred             ecccccCCCCCCceeecccccceeeee---eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      ... ......+.+++|+|+++++++.+   ....++ ...+++..+.+|...|++++|+   |++++|++++.||.|++|
T Consensus       461 ~~~-~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          461 QTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             EEE-ECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSEEEEE
T ss_pred             EEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEc---CCCCEEEEEECcCEEEEE
Confidence            222 23446678899999999998632   111121 2235567888999999999999   999999999999999999


Q ss_pred             eCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          321 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       321 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |.. +         +.+..+.+|.+.|++++|+| |+++|+|++.|++|++||
T Consensus       536 d~~-~---------~~~~~~~~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          536 NRN-G---------QLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CTT-S---------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             eCC-C---------CEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence            964 3         55667889999999999999 999999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.2e-48  Score=325.83  Aligned_cols=306  Identities=15%  Similarity=0.235  Sum_probs=249.8

Q ss_pred             CCcCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-----eeeEeeecCccEEEEEEeCCCCeEEE
Q 017194            1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNGPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~   75 (375)
                      |++++....+|+||++.|++++|+|+++++||||+.|++|+|||+.+.+     +...+.+|...|.+++|+|++++|++
T Consensus        24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            3456666678999999999999999867899999999999999987654     35677889999999999999999999


Q ss_pred             EcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee-eEecCcccceeEEEE
Q 017194           76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQF  154 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~  154 (375)
                      ++.|+.|++|+.......   .....+...+....+++++++|++++.|+.+++||+....... .+. +|...+..++|
T Consensus       104 ~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~-~~~~~v~~~~~  179 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTT---RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE-SHSEWVSCVRF  179 (340)
T ss_dssp             EETTSEEEEEETTTTEEE---EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-SCSSCEEEEEE
T ss_pred             EcccccceEEeeccccee---eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec-cccCcccceEE
Confidence            999999999999865432   3333456788899999999999999999999999997665433 344 78999999999


Q ss_pred             eeCCC-cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          155 IPWKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       155 ~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      ++++. .++++++.|+.|++||+++++....+..             |...|++++|+|      ++++|++|+.||.|+
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-------------h~~~v~~~~~s~------~~~~l~s~s~Dg~i~  240 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-------------HTGYLNTVTVSP------DGSLCASGGKDGQAM  240 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC-------------CSSCEEEEEECT------TSSEEEEEETTCEEE
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC-------------CCCcEEEEEECC------CCCEEEEEeCCCeEE
Confidence            98764 3678999999999999999888777753             468899999999      899999999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||+++.+                                        .+..+.. ...|.++.|+   |++. +++++.
T Consensus       241 iwd~~~~~----------------------------------------~~~~~~~-~~~v~~~~~~---~~~~-~~~~~~  275 (340)
T 4aow_A          241 LWDLNEGK----------------------------------------HLYTLDG-GDIINALCFS---PNRY-WLCAAT  275 (340)
T ss_dssp             EEETTTTE----------------------------------------EEEEEEC-SSCEEEEEEC---SSSS-EEEEEE
T ss_pred             EEEeccCc----------------------------------------eeeeecC-CceEEeeecC---CCCc-eeeccC
Confidence            99999742                                        2333433 4579999999   7765 556667


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |+.|++||++..................+|...|++++|+| ++++|++|+.||.|+|||++
T Consensus       276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCC
Confidence            99999999998765544433344455678999999999999 99999999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.9e-48  Score=327.76  Aligned_cols=300  Identities=18%  Similarity=0.212  Sum_probs=240.1

Q ss_pred             CCCeeeecCCCceeEEEE-----ecCCCCEEEEeCCCCcEEEEecccC-------ceeeEeeecCccEEEEEEeCCCCeE
Q 017194            6 AKPRRLRGHKATATCCIA-----SRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGNEDI   73 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~-----~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~l   73 (375)
                      .....|++|.+.|++++|     ++.++++|++|+.|++|++||+.+.       .+...+.+|...|.+++|+|++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            456689999999999999     7733899999999999999998754       3466788999999999999999999


Q ss_pred             EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE--ecCcccceeE
Q 017194           74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSS  151 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~  151 (375)
                      ++++.|++|++||+++++   .+..+.+|...|.+++|+|++++|++++.|+.|++||+.........  . .|...|.+
T Consensus        92 ~s~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~v~~  167 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGT---TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE-NHSDWVSC  167 (343)
T ss_dssp             EEEETTSEEEEEETTSSC---EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT-SCSSCEEE
T ss_pred             EEEcCCCcEEEEECCCCc---EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc-CCCceeee
Confidence            999999999999999764   44556678999999999999999999999999999999744332221  2 58889999


Q ss_pred             EEEeeCC----------CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC
Q 017194          152 VQFIPWK----------PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK  221 (375)
Q Consensus       152 ~~~~~~~----------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  221 (375)
                      ++|+|++          + +|++++.|+.|++||. ..+....+. .            |...|.+++|+|      +++
T Consensus       168 ~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~~-~------------h~~~v~~~~~s~------~g~  226 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNT-NFQIRYTFK-A------------HESNVNHLSISP------NGK  226 (343)
T ss_dssp             EEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEET-TTEEEEEEE-C------------CSSCEEEEEECT------TSS
T ss_pred             eeeccccccccccCCCCC-EEEEEcCCCEEEEEcC-CCceeEEEc-C------------ccccceEEEECC------CCC
Confidence            9999987          4 7999999999999994 344555554 2            568899999999      899


Q ss_pred             EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec
Q 017194          222 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF  301 (375)
Q Consensus       222 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  301 (375)
                      +|++|+.||.|++||+......                                       ...+ .+...|.+++|+  
T Consensus       227 ~l~sgs~dg~v~iwd~~~~~~~---------------------------------------~~~~-~~~~~v~~v~~s--  264 (343)
T 2xzm_R          227 YIATGGKDKKLLIWDILNLTYP---------------------------------------QREF-DAGSTINQIAFN--  264 (343)
T ss_dssp             EEEEEETTCEEEEEESSCCSSC---------------------------------------SEEE-ECSSCEEEEEEC--
T ss_pred             EEEEEcCCCeEEEEECCCCccc---------------------------------------ceee-cCCCcEEEEEEC--
Confidence            9999999999999999542100                                       0111 234569999999  


Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCceeee--ecc--hhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          302 GERGKYLISGGNDKLVKVWDCSRFQGVQ--TSI--NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       302 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                       |++++++++ .|+.|++||+.+.+...  ...  .........+|...|.+++|+| ++++|++|+.||.|++|+++
T Consensus       265 -p~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          265 -PKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             -SSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEE
T ss_pred             -CCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEE
Confidence             899887655 57889999998764321  100  0011112347888999999999 99999999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.3e-47  Score=340.29  Aligned_cols=325  Identities=19%  Similarity=0.254  Sum_probs=275.5

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +++.+..+.+|...|.+++|+|+ +++|++++.|+.|++||. +++.+..+.+|...|.+++|+|+++.|++++.|+.|+
T Consensus       210 ~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~  287 (577)
T 2ymu_A          210 NGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK  287 (577)
T ss_dssp             TSCEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCcEEEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence            45567788999999999999999 899999999999999996 4677888999999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +||...    +.+..+.+|...|.+++|+|++++|++++.|+.|++||... +.+..+. +|...+.+++|+|+++ .++
T Consensus       288 ~w~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~-~~~~~v~~~~~s~~g~-~l~  360 (577)
T 2ymu_A          288 LWNRNG----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLT-GHSSSVWGVAFSPDGQ-TIA  360 (577)
T ss_dssp             EEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECTTSS-EEE
T ss_pred             EEeCCC----cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEe-CCCCCEEEEEECCCCC-EEE
Confidence            999753    34556677899999999999999999999999999999754 4556777 8999999999999998 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||. +++.+..+..             |...|.+++|+|      ++++|++++.|+.|++||... +..
T Consensus       361 ~~~~dg~v~~~~~-~~~~~~~~~~-------------~~~~v~~~~~s~------dg~~l~~~~~d~~v~~~~~~~-~~~  419 (577)
T 2ymu_A          361 SASDDKTVKLWNR-NGQLLQTLTG-------------HSSSVRGVAFSP------DGQTIASASDDKTVKLWNRNG-QLL  419 (577)
T ss_dssp             EEETTSEEEEEET-TCCEEEEEEC-------------CSSCEEEEEECT------TSSCEEEEETTSEEEEECTTC-CEE
T ss_pred             EEeCCCEEEEEcC-CCCEEEEecC-------------CCCCeEEEEECC------CCCEEEEEeCCCEEEEEeCCC-CEE
Confidence            9999999999995 4666666653             467899999999      899999999999999999653 332


Q ss_pred             ecccccCCCCCCceeecccccceeeee---eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      ... ......+..++|+||++++++.+   ....++ ...+.+..+.+|...|.+++|+   |++++|++++.|+.|++|
T Consensus       420 ~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~-~~~~~~~~~~~~~~~v~~~~~s---pd~~~las~~~d~~i~iw  494 (577)
T 2ymu_A          420 QTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLW  494 (577)
T ss_dssp             EEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEEC---TTSCEEEEEETTSEEEEE
T ss_pred             EEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE-CCCCEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCEEEEE
Confidence            222 23445677899999999988632   111111 1234556788999999999999   999999999999999999


Q ss_pred             eCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          321 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       321 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |...          +.+..+.+|...|++++|+| ++++|++++.||.|++||.
T Consensus       495 ~~~~----------~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          495 NRNG----------QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             ETTS----------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT
T ss_pred             cCCC----------CEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeC
Confidence            9644          55667789999999999999 9999999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3e-46  Score=314.03  Aligned_cols=285  Identities=17%  Similarity=0.279  Sum_probs=251.4

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee---eEee--ecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ---LVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~--~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      ...+|.++|++++|+|+ +++|++++ ||.|++||+.+++..   ..+.  .|...|.+++|+|++++|++++.|+.|++
T Consensus        46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            34579999999999999 89999999 999999999877643   3333  68999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      ||+.+++. .....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+. .|...+.+++|+|+++ .+++
T Consensus       124 ~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~  200 (337)
T 1gxr_A          124 WDLAAPTP-RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGT-KLWT  200 (337)
T ss_dssp             EECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEE
T ss_pred             EECCCCCc-ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCC-EEEE
Confidence            99987642 3445566778899999999999999999999999999999999999998 8999999999999998 7999


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ++.|+.|++||+++++.+..+.              +...+.+++|+|      +++++++++.++.|++||+++..   
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~--------------~~~~v~~~~~s~------~~~~l~~~~~~~~i~~~~~~~~~---  257 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHD--------------FTSQIFSLGYCP------TGEWLAVGMESSNVEVLHVNKPD---  257 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE--------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTSSC---
T ss_pred             EecCCcEEEEECCCCceEeeec--------------CCCceEEEEECC------CCCEEEEEcCCCcEEEEECCCCC---
Confidence            9999999999999998887776              347899999999      79999999999999999998742   


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                                            ...+..|...|.+++|+   |++++|++++.||.|++||+.+
T Consensus       258 --------------------------------------~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          258 --------------------------------------KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             --------------------------------------EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTT
T ss_pred             --------------------------------------eEEEcCCccceeEEEEC---CCCCEEEEecCCCcEEEEECCC
Confidence                                                  12566788999999999   9999999999999999999999


Q ss_pred             ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ++.         + ....|...+.+++|+| ++++|++++.||.|++|++
T Consensus       297 ~~~---------~-~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          297 GAS---------I-FQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCE---------E-EEEECSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred             CeE---------E-EEecCCCcEEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence            742         2 3346889999999999 9999999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-46  Score=316.63  Aligned_cols=289  Identities=11%  Similarity=0.142  Sum_probs=253.2

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ....|.+|.+.|++++|+|+ +++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             ccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            34568999999999999998 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCcCce-----------eeeeEecCccc--c
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC-----------LYKSLRAGHSS--I  148 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~~--~  148 (375)
                      +.+++....+.    +...+.+++|+|+++++++++.+     +.|++||+....           ....+. .|..  .
T Consensus       103 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  177 (369)
T 3zwl_B          103 VSNGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDA  177 (369)
T ss_dssp             TTTCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCC
T ss_pred             CCCCcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccc
Confidence            99876544443    57899999999999999999998     999999998653           333444 5555  8


Q ss_pred             eeEEEEeeCCCcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      +.+++|+|+++ .+++++.||.|++||+++ ++.+..+..             +...|.+++|+|      ++++|++++
T Consensus       178 ~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~------~~~~l~~~~  237 (369)
T 3zwl_B          178 ATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDL-------------HEKSISDMQFSP------DLTYFITSS  237 (369)
T ss_dssp             EEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEEC-------------CSSCEEEEEECT------TSSEEEEEE
T ss_pred             eeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEec-------------CCCceeEEEECC------CCCEEEEec
Confidence            99999999998 799999999999999998 566666653             467899999999      799999999


Q ss_pred             cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194          228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                      .||.|++||+++..                                        ....+. +...+..++|+   |++++
T Consensus       238 ~d~~i~v~d~~~~~----------------------------------------~~~~~~-~~~~~~~~~~~---~~~~~  273 (369)
T 3zwl_B          238 RDTNSFLVDVSTLQ----------------------------------------VLKKYE-TDCPLNTAVIT---PLKEF  273 (369)
T ss_dssp             TTSEEEEEETTTCC----------------------------------------EEEEEE-CSSCEEEEEEC---SSSSE
T ss_pred             CCceEEEEECCCCc----------------------------------------eeeeec-CCCCceeEEec---CCCce
Confidence            99999999998742                                        222232 57789999999   99999


Q ss_pred             EEEecCCC--------------eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          308 LISGGNDK--------------LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       308 l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +++++.++              .+++||..++         +.+..+.+|...|.+++|+| ++++|++++.||.|++|+
T Consensus       274 l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             EEEEECCC-------------CEEEEEETTTC---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred             EEEeecCCCceEEEEecCCCcceeEEEecCCC---------cchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEE
Confidence            99999888              8999999998         55667788999999999999 999999999999999999


Q ss_pred             cC
Q 017194          374 IS  375 (375)
Q Consensus       374 ~~  375 (375)
                      ++
T Consensus       344 ~~  345 (369)
T 3zwl_B          344 FE  345 (369)
T ss_dssp             EC
T ss_pred             Cc
Confidence            74

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-46  Score=326.77  Aligned_cols=335  Identities=11%  Similarity=0.058  Sum_probs=269.5

Q ss_pred             Ceeee--cCCCceeEEEEecCCCC-EEEEeCCCCcEEEEec----ccCc------eeeEeee----------cCccEEEE
Q 017194            8 PRRLR--GHKATATCCIASRDRPG-FVASSGEDGCICWFDL----RSKD------VQLVTDV----------GNGPVTSL   64 (375)
Q Consensus         8 ~~~l~--~h~~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~----~~~~------~~~~~~~----------~~~~v~~l   64 (375)
                      .+.+.  .|.++|++++|+|+ ++ +||+|+.||.|++|++    .+++      ....+..          |...|.++
T Consensus        36 ~~~~~~~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL  114 (425)
T ss_dssp             CEECEEEEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE
T ss_pred             hhheeeeeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE
Confidence            34444  45699999999999 77 9999999999999999    8887      4555544          67899999


Q ss_pred             EEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC
Q 017194           65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG  144 (375)
Q Consensus        65 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  144 (375)
                      +|+|++++|++++.|+.|++||.. +   ..+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. .
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~  189 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWNKT-G---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-L  189 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETT-S---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-C
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeCC-C---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-c
Confidence            999999999999999999999933 3   4455566789999999999999999999999999999999999988888 6


Q ss_pred             cccc---------------eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          145 HSSI---------------CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       145 ~~~~---------------v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      +...               +.+++|+|++  .+++++.++.|++||+++++.+..+..             +...+.+++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~-------------~~~~i~~~~  254 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIG-------------HHGPISVLE  254 (425)
T ss_dssp             C---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECC-------------CSSCEEEEE
T ss_pred             cccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeecc-------------CCCceEEEE
Confidence            7666               9999999986  689999999999999999988877763             467899999


Q ss_pred             ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeee---eeeecCCcceeEeeeee
Q 017194          210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM---EILDQSGGKRLHLDYSV  286 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~---~~~~~~~~~~~~~~~~~  286 (375)
                      |+|      ++++|++++.||.|++||+++.+....... ....+..+.++|++ .+++.   +....++....+.+..+
T Consensus       255 ~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  326 (425)
T 1r5m_A          255 FND------TNKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS  326 (425)
T ss_dssp             EET------TTTEEEEEETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECC------CCCEEEEEcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence            999      799999999999999999998765554432 34567889999999 55542   22223333344566677


Q ss_pred             cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee-----------cchhhhhhhhccccc--ceeeeeec
Q 017194          287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-----------SINNDLLIKNINLNK--KVNWLCTT  353 (375)
Q Consensus       287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~~  353 (375)
                      ..|...|.+++|+   |++++|++++.||.|++||+.+......           ....+.+..+.+|..  .|.+++|+
T Consensus       327 ~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  403 (425)
T 1r5m_A          327 IVDGVPIFAGRIS---QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN  403 (425)
T ss_dssp             ECTTCCEEEEEEC---TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC
T ss_pred             ccCCccEEEEEEc---CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc
Confidence            8899999999999   9999999999999999999988631000           000015566777866  99999999


Q ss_pred             CCCCCcEEEeeCCCeEEEEecC
Q 017194          354 PTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       354 ~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      | ++++|++++.||.|++|+++
T Consensus       404 ~-~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          404 C-AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             T-TSSEEEEEESSSCCEEEECC
T ss_pred             C-CCceEEEEecCceEEEEeec
Confidence            9 99999999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-46  Score=308.29  Aligned_cols=287  Identities=15%  Similarity=0.282  Sum_probs=252.7

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .+..+.+++|.+.|++++| |+ +++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            3567789999999999999 87 789999999999999999999989999999999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee-CCCcEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~  163 (375)
                      |++........+..+..|...|.++.|  +++++++++.|+.|++||  .++....+. .|...+.+++|.| +++ .++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~-~l~  159 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSEN-KFL  159 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTT-EEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCC-EEE
Confidence            999876666677778889999999999  577999999999999999  677788888 8999999999999 666 899


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||  ..+....+...            +...+.+++++|      ++. +++++.||.|++||++++   
T Consensus       160 ~~~~d~~i~i~d--~~~~~~~~~~~------------~~~~i~~~~~~~------~~~-~~~~~~dg~i~i~d~~~~---  215 (313)
T 3odt_A          160 TASADKTIKLWQ--NDKVIKTFSGI------------HNDVVRHLAVVD------DGH-FISCSNDGLIKLVDMHTG---  215 (313)
T ss_dssp             EEETTSCEEEEE--TTEEEEEECSS------------CSSCEEEEEEEE------TTE-EEEEETTSEEEEEETTTC---
T ss_pred             EEECCCCEEEEe--cCceEEEEecc------------CcccEEEEEEcC------CCe-EEEccCCCeEEEEECCch---
Confidence            999999999999  34555555543            467899999999      566 999999999999999874   


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                           +.+..+.+|...|.+++|+   |++ .|++++.||.|++||+.
T Consensus       216 -------------------------------------~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          216 -------------------------------------DVLRTYEGHESFVYCIKLL---PNG-DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             -------------------------------------CEEEEEECCSSCEEEEEEC---TTS-CEEEEETTSEEEEECTT
T ss_pred             -------------------------------------hhhhhhhcCCceEEEEEEe---cCC-CEEEEecCCEEEEEECC
Confidence                                                 3445677899999999999   888 68999999999999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++         +.+..+..|...|.+++|+| +++ +++++.||.|++|+++
T Consensus       255 ~~---------~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          255 NG---------SLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             TC---------CEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred             CC---------ceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence            98         55567778889999999999 877 7789999999999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-46  Score=320.84  Aligned_cols=310  Identities=10%  Similarity=0.053  Sum_probs=248.2

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee--ecCccEEEEEEeC-CCCeEEEEcCCCe
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKS-GNEDIIYVSSGKE   81 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~l~~~~-~~~~l~~~~~d~~   81 (375)
                      ....+.+.+|.+.|++++|+|++.++|++|+.||.|++||+.+++....+.  +|...|.+++|+| ++++|++++.|+.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            345668889999999999999933899999999999999999888777765  5999999999999 7799999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      |++||+.+ .....+.....|...|.+++|+|++++|++++.|+.|++||+ +++.+..+. +|...|.+++|+|+++++
T Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTE
T ss_pred             EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCE
Confidence            99999985 344555555556688999999999999999999999999999 577888888 899999999999999867


Q ss_pred             EEEeecCCeEEEeeCCC----CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          162 VISGGLDSKLVMWDFSK----GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      +++++.|+.|++||+++    +..+..+.              +...+.+++|+|.     ++++|++++.|+.|++||+
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------------~~~~v~~~~~s~~-----~~~~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMP--------------HEKPVNAAYFNPT-----DSTKLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEE--------------CSSCEEEEEECTT-----TSCEEEEEESSSEEEEEET
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEec--------------CCCceEEEEEcCC-----CCCEEEEEcCCCcEEEEEC
Confidence            99999999999999998    44444443              5689999999883     5899999999999999999


Q ss_pred             CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeE
Q 017194          238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV  317 (375)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i  317 (375)
                      ++................                       ....+...-.....+..++|+   |++++  +++.||.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~p~~~~~~~~~s---~dg~~--s~s~d~~i  332 (383)
T 3ei3_B          281 YDWSKPDQIIIHPHRQFQ-----------------------HLTPIKATWHPMYDLIVAGRY---PDDQL--LLNDKRTI  332 (383)
T ss_dssp             TBTTSCSEEEECCBCCCT-----------------------TSCCCCCEECSSSSEEEEECB---CCTTT--CTTCCCCE
T ss_pred             CCCccccccccccccccc-----------------------cccceEEeccCCCCceEEEec---CCccc--ccCCCCeE
Confidence            986544322211100000                       000000000113456668888   88888  89999999


Q ss_pred             EEEeCCCceeeeecchhhhhhhhcc--cccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          318 KVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       318 ~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++||+.++         +.+..+.+  |...+..++|+| ++++|++++ ||.|++|+++
T Consensus       333 ~iwd~~~~---------~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          333 DIYDANSG---------GLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             EEEETTTC---------CEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC
T ss_pred             EEEecCCC---------ceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecC
Confidence            99999998         44445554  567777789999 999999997 9999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.1e-46  Score=317.56  Aligned_cols=299  Identities=10%  Similarity=0.079  Sum_probs=247.5

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      .+..|.++|++++|+|+ +++|++++.|+.|++||+.+++  .+..+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus         3 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             EEESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             eecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            45679999999999999 8999999999999999999887  78889999999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee---eeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      ++++. ........|...|.+++|+|++++|++++.|+.|++||++.++.   ...+...|...|.+++|+|++. +|++
T Consensus        82 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  159 (372)
T 1k8k_C           82 KGRTW-KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAA  159 (372)
T ss_dssp             ETTEE-EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEE
T ss_pred             CCCee-eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEE
Confidence            86542 22333455788999999999999999999999999999987752   3344337889999999999998 7999


Q ss_pred             eecCCeEEEeeCC------------------CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          165 GGLDSKLVMWDFS------------------KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       165 ~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      ++.|+.|++||++                  .++.+..+. .            +...+.+++|+|      ++++|+++
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~------~~~~l~~~  220 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-S------------SCGWVHGVCFSA------NGSRVAWV  220 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-C------------CSSCEEEEEECS------SSSEEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecC-C------------CCCeEEEEEECC------CCCEEEEE
Confidence            9999999999965                  344444443 2            567899999999      79999999


Q ss_pred             ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                      +.||.|++||++++                                        +.+..+..|..+|.+++|+   |+++
T Consensus       221 ~~d~~i~i~d~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~---~~~~  257 (372)
T 1k8k_C          221 SHDSTVCLADADKK----------------------------------------MAVATLASETLPLLAVTFI---TESS  257 (372)
T ss_dssp             ETTTEEEEEEGGGT----------------------------------------TEEEEEECSSCCEEEEEEE---ETTE
T ss_pred             eCCCEEEEEECCCC----------------------------------------ceeEEEccCCCCeEEEEEe---cCCC
Confidence            99999999999864                                        2344667888899999999   8999


Q ss_pred             EEEEecCCCeEEEEeCCC--ceeee--ec---------------------chhhh-------hhhhcccccceeeeeecC
Q 017194          307 YLISGGNDKLVKVWDCSR--FQGVQ--TS---------------------INNDL-------LIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       307 ~l~s~~~dg~i~iwd~~~--~~~~~--~~---------------------~~~~~-------~~~~~~~~~~v~~~~~~~  354 (375)
                      +|++| .|+.|++|++..  ++...  ..                     .....       .....+|...|++++|++
T Consensus       258 ~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  336 (372)
T 1k8k_C          258 LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS  336 (372)
T ss_dssp             EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred             EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec
Confidence            88888 899999999988  42110  00                     00001       112248999999999887


Q ss_pred             CCC---CcEEEeeCCCeEEEEec
Q 017194          355 TES---ENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       355 ~~~---~~l~s~~~dg~v~iw~~  374 (375)
                      .+|   ++|++++.||.|++|++
T Consensus       337 ~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          337 GGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             STTTSCSEEEEEETTSEEEEEEH
T ss_pred             CCCcceeeEEEecCCCceEEEEe
Confidence            687   99999999999999997

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-47  Score=328.24  Aligned_cols=332  Identities=16%  Similarity=0.186  Sum_probs=259.3

Q ss_pred             CCCCCeee-ecCCCceeEEEEec-CCCCEEEEeCCCCcEEEEeccc---Cce---eeEeeecCccEEEEEEeCCCCeEEE
Q 017194            4 AEAKPRRL-RGHKATATCCIASR-DRPGFVASSGEDGCICWFDLRS---KDV---QLVTDVGNGPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         4 ~~~~~~~l-~~h~~~i~~~~~~~-~~~~~l~s~~~d~~i~iw~~~~---~~~---~~~~~~~~~~v~~l~~~~~~~~l~~   75 (375)
                      +++.+.++ ++|.++|++++|+| + +++||+|+.||+|+|||+.+   +..   ...+ .|...|.+++|+|++++|++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            45667788 89999999999999 7 89999999999999999987   432   2233 58999999999999999999


Q ss_pred             EcCCCeEEEEECC---CCCccccc-----cccc--C--CCcceeEEE--EcCCCCeEEEEeCCCcEEEEeCcCceeeeeE
Q 017194           76 VSSGKEVKSFDVH---MPASWRPL-----ESYN--Y--NKEEINQIV--CNPKSSFLACADDGGDVKIIDIRQHCLYKSL  141 (375)
Q Consensus        76 ~~~d~~i~iwd~~---~~~~~~~~-----~~~~--~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  141 (375)
                      ++.|+.|++||++   +++.....     ..+.  .  +...+.++.  +++++++|++++.|+.|++||+++++.+..+
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence            9999999999995   33222111     1111  1  345666666  5678999999999999999999999999999


Q ss_pred             ecC--cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC
Q 017194          142 RAG--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT  219 (375)
Q Consensus       142 ~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  219 (375)
                      . .  |...|++++|+|++. +|++++.||.|++||+++++++..+...            +...|.+++++|.  ++++
T Consensus       209 ~-~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~--~s~~  272 (437)
T 3gre_A          209 E-NSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFG------------DHAPITHVEVCQF--YGKN  272 (437)
T ss_dssp             E-CCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCT------------TCEEEEEEEECTT--TCTT
T ss_pred             c-cCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecC------------CCCceEEEEeccc--cCCC
Confidence            8 7  889999999999998 7999999999999999999888887654            4578999977652  2237


Q ss_pred             CCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC--CCccEEEEE
Q 017194          220 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASCVA  297 (375)
Q Consensus       220 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~  297 (375)
                      +.+|++++.||.|++||+++++........ ...+..+.++|+++.+..               ..+.+  |...|.+++
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~v~~l~  336 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINS-DEQPSMEHFLPIEKGLEE---------------LNFCGIRSLNALSTIS  336 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESS-SSCCCGGGGSCBCSSGGG---------------CCCCCCCSGGGGCCEE
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcC-CCCCccceeccccccccc---------------ceecccccCCceEEEE
Confidence            889999999999999999987766554433 345666778888876521               12444  889999999


Q ss_pred             EeecCCCCcEEEEecCCCeEEEEeCCCceeeeecc----------------------------hhhhhhhhcccccceee
Q 017194          298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI----------------------------NNDLLIKNINLNKKVNW  349 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~v~~  349 (375)
                      |+    ++++|++|+.||.|++||+.+++......                            ..........|...|++
T Consensus       337 ~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  412 (437)
T 3gre_A          337 VS----NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS  412 (437)
T ss_dssp             EE----TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE
T ss_pred             EC----CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee
Confidence            98    56899999999999999999885432110                            01111223348999999


Q ss_pred             eeecCC-CCCcEEEeeCCCeEEEEe
Q 017194          350 LCTTPT-ESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       350 ~~~~~~-~~~~l~s~~~dg~v~iw~  373 (375)
                      ++|++. ++.+|++|+.||.|+||+
T Consensus       413 i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          413 ISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EeeeccCCceEEEEEcCCceEEEeC
Confidence            999983 277999999999999995

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-47  Score=326.54  Aligned_cols=318  Identities=9%  Similarity=0.041  Sum_probs=238.5

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ...++.|.++|++++|+|+ +++||+|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus         4 ~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            4 SQVLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEEEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred             ceeEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            3456668899999999998 899999999999999999988  7788899999999999999999999999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce---eeeeEecC-cccceeEEEEeeCCCcE
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAG-HSSICSSVQFIPWKPWE  161 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~  161 (375)
                      |+.+++.......+..|...|.+++|+|++++|++++.|+.|++||+++++   ....+. . |...|.+++|+|+++ +
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~  160 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNV-L  160 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-SSCCSCEEEEEECTTSS-E
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-cccCCCeEEEEEcCCCC-E
Confidence            999766445566677789999999999999999999999999999999876   467777 6 999999999999998 7


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCC---C-CCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENN---G-NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      |++++.|+.|++||++..+.............   . ......|...|.+++|+|      ++++|++++.||.|++||+
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP------SGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT------TSSCEEEEETTTEEC-CEE
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC------CCCEEEEEeCCCcEEEEEC
Confidence            99999999999999964331110000000000   0 000002678899999999      7999999999999999999


Q ss_pred             CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeE
Q 017194          238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV  317 (375)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i  317 (375)
                      .++...                                    ...+..+.+|...|.+++|+   |++++|++++.|+.+
T Consensus       235 ~~~~~~------------------------------------~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~~~~~  275 (377)
T 3dwl_C          235 SAPEQP------------------------------------PRALITVKLSQLPLRSLLWA---NESAIVAAGYNYSPI  275 (377)
T ss_dssp             CSTTSC------------------------------------EEECCCEECSSSCEEEEEEE---ETTEEEEEESSSSEE
T ss_pred             CCCCCc------------------------------------ceeeEeecCCCCceEEEEEc---CCCCEEEEEcCCcEE
Confidence            975321                                    12355778899999999999   899999999887766


Q ss_pred             EEEeCCCcee-ee-ecc------h-------------h---------h-------------hhhhhcccccceeeeeecC
Q 017194          318 KVWDCSRFQG-VQ-TSI------N-------------N---------D-------------LLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       318 ~iwd~~~~~~-~~-~~~------~-------------~---------~-------------~~~~~~~~~~~v~~~~~~~  354 (375)
                       +|+...... .. ...      .             .         .             .......|...|+++++.+
T Consensus       276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~  354 (377)
T 3dwl_C          276 -LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA  354 (377)
T ss_dssp             -EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred             -EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence             666552210 00 000      0             0         0             0011223999999999877


Q ss_pred             CCCC---cEEEeeCCCeEEEEec
Q 017194          355 TESE---NLVVCDTSKVVKVYSI  374 (375)
Q Consensus       355 ~~~~---~l~s~~~dg~v~iw~~  374 (375)
                      .++.   .|+|++.||.|++||+
T Consensus       355 ~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          355 GTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EETTEEEEEEEEETTSEEEEECC
T ss_pred             CCCCceEEEEeecCCCcEEEecC
Confidence            4444   6999999999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-46  Score=321.89  Aligned_cols=308  Identities=14%  Similarity=0.135  Sum_probs=248.9

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc------eeeEeeecCccEEEEEEeCC----C---CeE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFKSG----N---EDI   73 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~l~~~~~----~---~~l   73 (375)
                      ..+.+++|.++|++++|+|   ++|++|+.||.|++|++.+++      .+..+..|...|.+++|+|+    +   ++|
T Consensus         8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            4567789999999999987   599999999999999999988      78888899999999999999    9   999


Q ss_pred             EEEcCCCeEEEEECCCCCccc--ccccccCC-----CcceeEEEEc----CCCCe-EEEEeCCCcEEEEeCcC------c
Q 017194           74 IYVSSGKEVKSFDVHMPASWR--PLESYNYN-----KEEINQIVCN----PKSSF-LACADDGGDVKIIDIRQ------H  135 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~  135 (375)
                      ++++.|+.|++||+.+++...  .+..+..|     ...|.+++|+    |++++ |++++.||.|++||+++      +
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            999999999999998755310  14445555     5899999999    99999 99999999999999998      7


Q ss_pred             eeee-----eEe------cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC---
Q 017194          136 CLYK-----SLR------AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN---  201 (375)
Q Consensus       136 ~~~~-----~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---  201 (375)
                      +.+.     .+.      ..|...|.+++|+|++  ++++++.|+.|++||+++++.+..+...          ..|   
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~h~~~  232 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQ----------HSMINN  232 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECC----------C---CC
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEecc----------cccccc
Confidence            6666     664      1488999999999998  6999999999999999999888887640          002   


Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcc
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK  278 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~  278 (375)
                      ...+.+++|+|      ++++|++++.|   |.|++||+++++.......+...                          
T Consensus       233 ~~~i~~i~~~~------~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~--------------------------  280 (397)
T 1sq9_A          233 SNSIRSVKFSP------QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS--------------------------  280 (397)
T ss_dssp             CCCEEEEEECS------STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------
T ss_pred             CCccceEEECC------CCCEEEEEecCCCCceEEEEECCCCcccceeccCccc--------------------------
Confidence            47899999999      79999999999   99999999975332211110000                          


Q ss_pred             eeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc------cc---------
Q 017194          279 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI------NL---------  343 (375)
Q Consensus       279 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~~---------  343 (375)
                       .........|...|.+++|+   |++++|++++.||.|++||+.+++..         ..+.      +|         
T Consensus       281 -~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~  347 (397)
T 1sq9_A          281 -SQASLGEFAHSSWVMSLSFN---DSGETLCSAGWDGKLRFWDVKTKERI---------TTLNMHCDDIEIEEDILAVDE  347 (397)
T ss_dssp             ------CCBSBSSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEE---------EEEECCGGGCSSGGGCCCBCT
T ss_pred             -ccccccccccCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEcCCCcee---------EEEecccCcccchhhhhcccc
Confidence             00000111288999999999   99999999999999999999998543         3333      45         


Q ss_pred             ------ccceeeeeecCCCC----------CcEEEeeCCCeEEEEecC
Q 017194          344 ------NKKVNWLCTTPTES----------ENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       344 ------~~~v~~~~~~~~~~----------~~l~s~~~dg~v~iw~~~  375 (375)
                            ...|.+++|+| ++          ++|++++.||.|++|+++
T Consensus       348 ~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          348 HGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             ccccccCCceeEEEecc-ccccccccccccceEEEecCCCcEEEEEcC
Confidence                  89999999999 77          799999999999999973

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-45  Score=338.80  Aligned_cols=300  Identities=17%  Similarity=0.260  Sum_probs=242.3

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-----eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      ...+++|++.|++++|+|+++++|+||+.|++|++|++.+..     ....+.+|...|.+++|+|++++|++++.|+.|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            456899999999999999867899999999999999997643     356788999999999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe--cCcccceeEEEEeeCCC-
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKP-  159 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-  159 (375)
                      ++||+.++.   ....+.+|...|.+++|+|++++|++++.|++|++||+..........  .+|...|.+++|+|++. 
T Consensus       455 ~vwd~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          455 RLWDLAAGV---STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEEETTTTE---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             EEEECCCCc---ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            999998754   345566789999999999999999999999999999986554332221  16888999999999873 


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ..+++++.|++|++||+++++....+. +            |...|.+++|+|      ++++|++++.||.|++||+++
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~-~------------h~~~v~~v~~sp------dg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLA-G------------HTGYVSTVAVSP------DGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC-C------------CSSCEEEEEECT------TSSEEEEEETTSBCEEEETTT
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEc-C------------CCCCEEEEEEeC------CCCEEEEEeCCCeEEEEECCC
Confidence            379999999999999999988777765 3            578899999999      899999999999999999997


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      ++                                        .+..+.. ...|.+++|+   |++.+|++++ |+.|++
T Consensus       593 ~~----------------------------------------~~~~~~~-~~~v~~~~~s---p~~~~l~~~~-~~~i~i  627 (694)
T 3dm0_A          593 GK----------------------------------------KLYSLEA-NSVIHALCFS---PNRYWLCAAT-EHGIKI  627 (694)
T ss_dssp             TE----------------------------------------EEECCBC-SSCEEEEEEC---SSSSEEEEEE-TTEEEE
T ss_pred             Cc----------------------------------------eEEEecC-CCcEEEEEEc---CCCcEEEEEc-CCCEEE
Confidence            52                                        2223333 4579999999   8988887765 566999


Q ss_pred             EeCCCceeeeecchhh-h---------hhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          320 WDCSRFQGVQTSINND-L---------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       320 wd~~~~~~~~~~~~~~-~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ||+.++.......... .         ......+...+++++|+| ++++|++|+.||.|++|++.
T Consensus       628 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          628 WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             EECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence            9999986542211000 0         000111223478899999 99999999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9e-46  Score=313.69  Aligned_cols=307  Identities=16%  Similarity=0.181  Sum_probs=245.8

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCC---CCcEEEEecccCceeeEe-eecCccEEEEEEeCC---CCeEEEEcCCCe
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSG---NEDIIYVSSGKE   81 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~-~~~~~~v~~l~~~~~---~~~l~~~~~d~~   81 (375)
                      ..+++|.+.|++++|+|++..++++|+.   |+.|++||+.+++..... ..|...|.+++|+|+   +++|++++.|+.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4557899999999999994456677776   999999999988865443 368999999999998   699999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEE------EcCCCCeEEEEeCCCcEEEEeCcCce-eeeeEecCccc----cee
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIV------CNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSS----ICS  150 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~----~v~  150 (375)
                      |++||+.+++  ..+..+.+|...|.++.      |+|++++|++++.||.|++||+++++ .+..+. .|..    .+.
T Consensus        92 i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~  168 (357)
T 3i2n_A           92 LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCW  168 (357)
T ss_dssp             EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEE
T ss_pred             EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceE
Confidence            9999998754  24556678899999995      57899999999999999999999886 677776 5544    788


Q ss_pred             EEE----EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          151 SVQ----FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       151 ~~~----~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      +++    |+|++. ++++++.|+.|++||+++++......              +...+.+++|+|.   ..++.+++++
T Consensus       169 ~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--------------~~~~v~~~~~~~~---~~~~~~l~~~  230 (357)
T 3i2n_A          169 TVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETN--------------IKNGVCSLEFDRK---DISMNKLVAT  230 (357)
T ss_dssp             EEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEE--------------CSSCEEEEEESCS---SSSCCEEEEE
T ss_pred             EEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecC--------------CCCceEEEEcCCC---CCCCCEEEEE
Confidence            888    678888 79999999999999999988755544              4578999999972   1138899999


Q ss_pred             ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                      +.||.|++||+++......                                   .....+.+|...|.+++|+   |+++
T Consensus       231 ~~dg~i~i~d~~~~~~~~~-----------------------------------~~~~~~~~~~~~v~~~~~~---~~~~  272 (357)
T 3i2n_A          231 SLEGKFHVFDMRTQHPTKG-----------------------------------FASVSEKAHKSTVWQVRHL---PQNR  272 (357)
T ss_dssp             ESTTEEEEEEEEEEETTTE-----------------------------------EEEEEEECCSSCEEEEEEE---TTEE
T ss_pred             CCCCeEEEEeCcCCCcccc-----------------------------------eeeeccCCCcCCEEEEEEC---CCCC
Confidence            9999999999986421100                                   1112455899999999999   8988


Q ss_pred             -EEEEecCCCeEEEEeCCCceeeeec----------chhhhhhhhcccccceeeeeecCCCCCcEE-EeeCCCeEEEEec
Q 017194          307 -YLISGGNDKLVKVWDCSRFQGVQTS----------INNDLLIKNINLNKKVNWLCTTPTESENLV-VCDTSKVVKVYSI  374 (375)
Q Consensus       307 -~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~v~iw~~  374 (375)
                       +|++++.||.|++||+.........          ...+.+..+.+|...|.+++|+| ++++|+ +++.||.|++|++
T Consensus       273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEE
T ss_pred             cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEEC
Confidence             8999999999999999875322100          00124556778999999999999 899998 8999999999997


Q ss_pred             C
Q 017194          375 S  375 (375)
Q Consensus       375 ~  375 (375)
                      +
T Consensus       352 ~  352 (357)
T 3i2n_A          352 T  352 (357)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-45  Score=318.07  Aligned_cols=253  Identities=19%  Similarity=0.331  Sum_probs=230.5

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      .+++..+++++|.+.|++++|+|+ +++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++++|++++.|++|
T Consensus       138 ~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i  216 (410)
T 1vyh_C          138 ETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI  216 (410)
T ss_dssp             TTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             CCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            356778899999999999999998 8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC-----
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW-----  157 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----  157 (375)
                      ++||++++..   +..+.+|...|.++.++|++++|++++.|+.|++||+.+++....+. +|...|.+++|+|+     
T Consensus       217 ~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~  292 (410)
T 1vyh_C          217 KMWEVQTGYC---VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSS  292 (410)
T ss_dssp             EEEETTTCCE---EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGG
T ss_pred             EEEECCCCcE---EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccc
Confidence            9999997643   45566789999999999999999999999999999999999999999 99999999999996     


Q ss_pred             ---------------CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCE
Q 017194          158 ---------------KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI  222 (375)
Q Consensus       158 ---------------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  222 (375)
                                     +. +|++|+.|+.|++||+++++++..+..             |...|.+++|+|      ++++
T Consensus       293 ~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~~~~~~~-------------h~~~v~~v~~~~------~g~~  352 (410)
T 1vyh_C          293 ISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMCLMTLVG-------------HDNWVRGVLFHS------GGKF  352 (410)
T ss_dssp             GGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEEEEEEEC-------------CSSCEEEEEECS------SSSC
T ss_pred             hhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCceEEEEEC-------------CCCcEEEEEEcC------CCCE
Confidence                           44 799999999999999999998888763             568899999999      7999


Q ss_pred             EEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecC
Q 017194          223 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG  302 (375)
Q Consensus       223 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  302 (375)
                      |++++.||.|++||+.++                                        +++..+.+|...|.+++|+   
T Consensus       353 l~s~s~D~~i~vwd~~~~----------------------------------------~~~~~~~~h~~~v~~l~~~---  389 (410)
T 1vyh_C          353 ILSCADDKTLRVWDYKNK----------------------------------------RCMKTLNAHEHFVTSLDFH---  389 (410)
T ss_dssp             EEEEETTTEEEEECCTTS----------------------------------------CCCEEEECCSSCEEEEEEC---
T ss_pred             EEEEeCCCeEEEEECCCC----------------------------------------ceEEEEcCCCCcEEEEEEc---
Confidence            999999999999999864                                        3345678899999999999   


Q ss_pred             CCCcEEEEecCCCeEEEEeCC
Q 017194          303 ERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       303 ~~~~~l~s~~~dg~i~iwd~~  323 (375)
                      |++.+|++|+.||.|++|+++
T Consensus       390 ~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          390 KTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SSSSCEEEEETTSEEEEEC--
T ss_pred             CCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.5e-45  Score=305.20  Aligned_cols=248  Identities=21%  Similarity=0.277  Sum_probs=227.4

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      ...+.+|...|.+++|+|+ +.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.++.|++|++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            3468899999999999999 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      ++++..   ..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +|..+|.+++|+|+++ +|++++.
T Consensus       152 ~~~~~~---~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~-~l~s~s~  226 (321)
T 3ow8_A          152 ESGKKE---YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQ-LLVTASD  226 (321)
T ss_dssp             TTCSEE---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSC-EEEEECT
T ss_pred             CCCcee---EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCC-EEEEEcC
Confidence            976543   3344567889999999999999999999999999999999999999 9999999999999998 7999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      |+.|++||+++++....+. +            |...|.+++|+|      ++++|++++.|+.|++||+.++       
T Consensus       227 dg~i~iwd~~~~~~~~~~~-~------------h~~~v~~~~~sp------~~~~l~s~s~D~~v~iwd~~~~-------  280 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGTLS-G------------HASWVLNVAFCP------DDTHFVSSSSDKSVKVWDVGTR-------  280 (321)
T ss_dssp             TSCEEEEETTTCCEEEEEC-C------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTT-------
T ss_pred             CCeEEEEECCCcceeEEEc-C------------CCCceEEEEECC------CCCEEEEEeCCCcEEEEeCCCC-------
Confidence            9999999999988877765 3            567899999999      7999999999999999999874       


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                       +++..+.+|...|.+++|+   |++++|++++.||.|++||..
T Consensus       281 ---------------------------------~~~~~~~~h~~~v~~v~~s---~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          281 ---------------------------------TCVHTFFDHQDQVWGVKYN---GNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ---------------------------------EEEEEECCCSSCEEEEEEC---TTSSEEEEEETTCCEEEEECC
T ss_pred             ---------------------------------EEEEEEcCCCCcEEEEEEC---CCCCEEEEEeCCCeEEEEeCC
Confidence                                             4556788999999999999   999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-45  Score=304.19  Aligned_cols=255  Identities=14%  Similarity=0.202  Sum_probs=221.1

Q ss_pred             ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      +..+++.+|.+.|.+++|+|++++|++++.|+.|++||++++.   .+..+..|..+|.+++|+|++++|++|+.|+.|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            4467789999999999999999999999999999999998754   3445566789999999999999999999999999


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      +||+++++.+..+. +|...|.+++|+|+++ +|++|+.|++|++||++++........+            |...|.++
T Consensus        81 vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~------------h~~~v~~v  146 (304)
T 2ynn_A           81 VFNYNTGEKVVDFE-AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEG------------HEHFVMCV  146 (304)
T ss_dssp             EEETTTCCEEEEEE-CCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECC------------CCSCEEEE
T ss_pred             EEECCCCcEEEEEe-CCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcc------------cCCcEEEE
Confidence            99999999999999 9999999999999998 7999999999999999887554433334            57889999


Q ss_pred             eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194          209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG  288 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~  288 (375)
                      +|+|.     ++.+|++|+.|+.|++||+++....                                       .....+
T Consensus       147 ~~~p~-----~~~~l~sgs~D~~v~iwd~~~~~~~---------------------------------------~~~~~~  182 (304)
T 2ynn_A          147 AFNPK-----DPSTFASGCLDRTVKVWSLGQSTPN---------------------------------------FTLTTG  182 (304)
T ss_dssp             EECTT-----CTTEEEEEETTSEEEEEETTCSSCS---------------------------------------EEEECC
T ss_pred             EECCC-----CCCEEEEEeCCCeEEEEECCCCCcc---------------------------------------ceeccC
Confidence            99984     5789999999999999999864211                                       112235


Q ss_pred             CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194          289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                      |...+..+.|+|. +++.+|++|+.|+.|++||++++         +++..+.+|...|.+++|+| ++++|++++.||.
T Consensus       183 ~~~~v~~~~~~~~-~~~~~l~s~s~D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGT  251 (304)
T ss_dssp             CTTCEEEEEECCS-TTCCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred             CcCcEEEEEEEEc-CCCCEEEEEcCCCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCe
Confidence            6678999999842 47889999999999999999998         55667889999999999999 8899999999999


Q ss_pred             EEEEecC
Q 017194          369 VKVYSIS  375 (375)
Q Consensus       369 v~iw~~~  375 (375)
                      |++||++
T Consensus       252 i~iWd~~  258 (304)
T 2ynn_A          252 LKIWNSS  258 (304)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.1e-46  Score=315.37  Aligned_cols=317  Identities=10%  Similarity=0.107  Sum_probs=251.1

Q ss_pred             eecCCCceeEEEEecC---CCCEEEEeCCCCcEEEEecccCceeeEeee-----cCccEEEEEEeCC----CCeEEEEcC
Q 017194           11 LRGHKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDVQLVTDV-----GNGPVTSLCFKSG----NEDIIYVSS   78 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~l~~~~~----~~~l~~~~~   78 (375)
                      ..+|.++|++++|+|+   +...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +++|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999983   345666666677999999998888777764     4578999999998    678999999


Q ss_pred             CCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeE---ecCcccceeEEEE
Q 017194           79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSL---RAGHSSICSSVQF  154 (375)
Q Consensus        79 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~  154 (375)
                      |+.|++||+.+++.   +..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+..+   . .|...|.+++|
T Consensus        94 dg~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~  169 (366)
T 3k26_A           94 RGIIRIINPITMQC---IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY  169 (366)
T ss_dssp             TCEEEEECTTTCCE---EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-SCSSCEEEEEE
T ss_pred             CCEEEEEEchhceE---eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-cccCceeEEEE
Confidence            99999999987543   445667899999999999 8999999999999999999999988888   5 79999999999


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC---CCCCC------------CCCCcccCCCceeEEeecCCccccCC
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG---LPENN------------GNAGQCYNPAFVHAIAIPDADMLDKT  219 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~  219 (375)
                      +|++. .|++++.||.|++||+++++....+...   .++..            .......+...|.+++|+        
T Consensus       170 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------  240 (366)
T 3k26_A          170 DLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--------  240 (366)
T ss_dssp             CTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--------
T ss_pred             CCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--------
Confidence            99998 7999999999999999987654433210   00000            000011156789999995        


Q ss_pred             CCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194          220 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  299 (375)
Q Consensus       220 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  299 (375)
                      ++++++++.||.|++||+.+...........                          ......+..+..|...|.+++|+
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPS--------------------------ESNVTILGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTT--------------------------CCCEEEEEEEECSSCCSSCCCCE
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccC--------------------------CcchheeccccccCCcEEEEEEc
Confidence            5699999999999999998764432221110                          12235566788899999999999


Q ss_pred             ecCCC--CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc--ccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          300 MFGER--GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       300 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                         |+  +++|++|+.||.|++||+.+++...     .....+.+|  ...|.+++|+| ++++|++++.||.|++||+.
T Consensus       295 ---~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          295 ---MDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ---ECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             ---CCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence               78  9999999999999999999873210     112245566  79999999999 99999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-46  Score=323.58  Aligned_cols=300  Identities=11%  Similarity=0.070  Sum_probs=251.5

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc----CceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEEC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~   87 (375)
                      .|...|++++|+|+ +++|++|+.||.|++|++.+    .+.+..+..|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus        65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            58899999999999 89999999999999999987    4578888899999999999998 899999999999999999


Q ss_pred             CCCC------cccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCc------ccceeEEEE
Q 017194           88 HMPA------SWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGH------SSICSSVQF  154 (375)
Q Consensus        88 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~  154 (375)
                      .+++      ....+.....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+. .+      ...|.+++|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~  222 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEW  222 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEE
Confidence            9765      33344445678899999999998 7899999999999999999999988887 55      789999999


Q ss_pred             eeCCCcEEEEeecCC---eEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          155 IPWKPWEVISGGLDS---KLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~---~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      +|++..++++++.|+   .|++||++++ ++...+...            |...|.+++|+|.     ++++|++++.||
T Consensus       223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~------------~~~~v~~~~~s~~-----~~~~l~s~~~dg  285 (416)
T 2pm9_A          223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG------------HQKGILSLDWCHQ-----DEHLLLSSGRDN  285 (416)
T ss_dssp             CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC------------CSSCEEEEEECSS-----CSSCEEEEESSS
T ss_pred             CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC------------ccCceeEEEeCCC-----CCCeEEEEeCCC
Confidence            999865899999998   9999999986 444444312            5688999999984     689999999999


Q ss_pred             cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC-cEEE
Q 017194          231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLI  309 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~  309 (375)
                      .|++||++++                                        +.+..+.+|...|.+++|+   |++ .+|+
T Consensus       286 ~v~~wd~~~~----------------------------------------~~~~~~~~~~~~v~~~~~s---~~~~~~l~  322 (416)
T 2pm9_A          286 TVLLWNPESA----------------------------------------EQLSQFPARGNWCFKTKFA---PEAPDLFA  322 (416)
T ss_dssp             EEEEECSSSC----------------------------------------CEEEEEECSSSCCCCEEEC---TTCTTEEE
T ss_pred             CEEEeeCCCC----------------------------------------ccceeecCCCCceEEEEEC---CCCCCEEE
Confidence            9999999874                                        3445677899999999999   888 8999


Q ss_pred             EecCCCeEEEEeCCCceeeeecch--------hhhh------------------hhhcccccceeeeeecCCCCCcEEEe
Q 017194          310 SGGNDKLVKVWDCSRFQGVQTSIN--------NDLL------------------IKNINLNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       310 s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~------------------~~~~~~~~~v~~~~~~~~~~~~l~s~  363 (375)
                      +++.||.|++||+.+.........        ...+                  .....|..++.+++|+| +|++|+++
T Consensus       323 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~  401 (416)
T 2pm9_A          323 CASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQIT  401 (416)
T ss_dssp             ECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBC
T ss_pred             EEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEe
Confidence            999999999999988753211100        0000                  01112677888999999 99999999


Q ss_pred             eCCCeEEEEecC
Q 017194          364 DTSKVVKVYSIS  375 (375)
Q Consensus       364 ~~dg~v~iw~~~  375 (375)
                      +.|+.|+||+++
T Consensus       402 ~~d~~v~~w~~~  413 (416)
T 2pm9_A          402 PDGKGVSITNPK  413 (416)
T ss_dssp             TTSSCBCCBCCC
T ss_pred             CCCCeEEEEEec
Confidence            999999999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.5e-46  Score=321.59  Aligned_cols=313  Identities=13%  Similarity=0.099  Sum_probs=236.8

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEeeecCccEEEEEEeC-CCCeEEEEcCCCeEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVK   83 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~   83 (375)
                      ......+|...|+||+|+|.++++||+|+.||+|+|||+.+++..  ..+.+|...|++|+|+| ++++|++++.|++|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            445677899999999999976789999999999999999877654  34567999999999998 688999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +||++++. ...+.....+...+.+++|+|++++|++|+.||.|++||++ ++.+..+. +|...|.+++|+|+++.+++
T Consensus       191 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~-~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          191 LQDFKGNI-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-MHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEETTSCE-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSB-CCSSCEEEEEECTTCSSEEE
T ss_pred             EeeccCCc-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEe-cccceEEeeeecCCCceEEE
Confidence            99998543 33333344445678899999999999999999999999986 45667788 89999999999999987899


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||+++.+....+...          ..|...|++++|+|      ++++|++++.||.|++||+.++...
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~----------~~h~~~v~~~~~sp------dg~~l~s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYS----------LPHRHPVNAACFSP------DGARLLTTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBC----------CBCSSCEEECCBCT------TSSEEEEEESSSCEEEEESSSSSSE
T ss_pred             EecCcceeeEEecccccccceEEEe----------eeccccccceeECC------CCCeeEEEcCCCEEEEEECCCCccc
Confidence            9999999999999987655433211          11568899999999      8999999999999999999986554


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDC  322 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~  322 (375)
                      .............                       ...+.........+..+.++   +++..++.++ .++.|++||.
T Consensus       332 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~i~iwd~  385 (435)
T 4e54_B          332 LGLIPHPHRHFQH-----------------------LTPIKAAWHPRYNLIVVGRY---PDPNFKSCTPYELRTIDVFDG  385 (435)
T ss_dssp             EEECCCCCCCCSS-----------------------SCCCBCEECSSSSCEEEECC---CCTTSCCSSTTCCCCEEEECS
T ss_pred             eEEeccccccccc-----------------------ceeEEEEEcCCCCEEEEEEc---CCCCeEEEEecCCCEEEEEEC
Confidence            4332221100000                       00000001112233444555   5665555444 4568999999


Q ss_pred             CCceeeeecchhhhhhh-hcccccceeee-eecCCCCCcEEEeeCCCeEEEEecC
Q 017194          323 SRFQGVQTSINNDLLIK-NINLNKKVNWL-CTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      .+++         .+.. ..+|...|.++ +|+| +|++|++|+ |+.|+||+++
T Consensus       386 ~~g~---------~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          386 NSGK---------MMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             SSCC---------EEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred             CCCc---------EEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence            9984         3333 34688889888 5888 999999876 7899999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.2e-44  Score=351.07  Aligned_cols=351  Identities=17%  Similarity=0.189  Sum_probs=289.2

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      ...+.+|.+.|++++|+|+ +++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            4467899999999999999 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      .+++   .+..+.+|...|.+++|+|  ++.++++|+.|+.|++||+++++.+..+. +|...|.+++|+|+++ .++++
T Consensus       687 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~-~l~s~  761 (1249)
T 3sfz_A          687 ATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDE-LLASC  761 (1249)
T ss_dssp             TTCC---EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTT-EEEEE
T ss_pred             CCCc---eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCC-EEEEE
Confidence            9764   4455667899999999999  55689999999999999999999999999 9999999999999998 79999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.||.|++||+++++....+...................+.+++|+|      +++.+++++ ++.+.+||+.++.....
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------dg~~l~~~~-~~~v~~~d~~~~~~~~~  834 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA------DGDKIIVAA-KNKVLLFDIHTSGLLAE  834 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT------TSSEEEEEE-TTEEEEEETTTCCEEEE
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC------CCCEEEEEc-CCcEEEEEecCCCceeE
Confidence            99999999999998877776543111111111111234688899998      799998887 68999999999888777


Q ss_pred             ccccCCCCCCceeecccccceeeee---eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                      ........+.+++++|++..+++.+   ....++.........+.+|...|.+++|+   |++++|++++.||.|++|++
T Consensus       835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s---pdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS---PDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEEH
T ss_pred             EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC---CCCCEEEEEeCCCeEEEEEc
Confidence            7767778899999999999988632   22233333445667888999999999999   99999999999999999996


Q ss_pred             CCceee----------------------------------------------------------------------eecc
Q 017194          323 SRFQGV----------------------------------------------------------------------QTSI  332 (375)
Q Consensus       323 ~~~~~~----------------------------------------------------------------------~~~~  332 (375)
                      ......                                                                      ....
T Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~  991 (1249)
T 3sfz_A          912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP  991 (1249)
T ss_dssp             HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred             cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence            531000                                                                      0011


Q ss_pred             hhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          333 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       333 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      .........+|...|.+++|+| ++++|++++.||.|++|++.
T Consensus       992 ~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A          992 NNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp             TTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETT
T ss_pred             CCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECC
Confidence            1233345567999999999999 99999999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-44  Score=301.48  Aligned_cols=246  Identities=11%  Similarity=0.109  Sum_probs=209.4

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE----eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV----TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      ..|...|++++|+|+  ..|++|+.||+|+|||+++++.+..    +.+|...|++++|+|++++|++++.|++|++||+
T Consensus        79 ~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           79 VQTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EEESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            346788999999998  4788999999999999999876544    3479999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEEEEe
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      +++   +.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+.. .|...+.+++|+|++..+|++|
T Consensus       157 ~~~---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          157 AQQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             TTT---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             CCC---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            975   44566778899999999999874 688999999999999999988776641 4556789999999776689999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC-CEEEEEecCCcEEEEeCCCcceee
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      +.||.|++||+++++++..+..             |...|++++|+|      ++ ++|++|+.|+.|++||+.+++   
T Consensus       234 ~~dg~v~~wd~~~~~~~~~~~~-------------h~~~v~~v~fsp------~g~~~lasgs~D~~i~vwd~~~~~---  291 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVLSSAV-------------HSQCVTGLVFSP------HSVPFLASLSEDCSLAVLDSSLSE---  291 (344)
T ss_dssp             ETTSEEEEEESCC--CCEEEEC-------------CSSCEEEEEECS------SSSCCEEEEETTSCEEEECTTCCE---
T ss_pred             ccCCcEEEEECCCCcEEEEEcC-------------CCCCEEEEEEcc------CCCeEEEEEeCCCeEEEEECCCCc---
Confidence            9999999999999999988874             478899999999      56 689999999999999998641   


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc-EEEEecCCCeEEEEeCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCS  323 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-~l~s~~~dg~i~iwd~~  323 (375)
                                                            +..+.+|...|++++|+   |+++ +|++++.|++|++|++.
T Consensus       292 --------------------------------------~~~~~~H~~~V~~v~~s---p~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          292 --------------------------------------LFRSQAHRDFVRDATWS---PLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             --------------------------------------EEEECCCSSCEEEEEEC---SSSTTEEEEEETTSCEEEEECC
T ss_pred             --------------------------------------EEEEcCCCCCEEEEEEe---CCCCeEEEEEcCCCeEEEEECC
Confidence                                                  23567999999999999   8876 67799999999999998


Q ss_pred             Cc
Q 017194          324 RF  325 (375)
Q Consensus       324 ~~  325 (375)
                      +.
T Consensus       331 ~~  332 (344)
T 4gqb_B          331 TE  332 (344)
T ss_dssp             C-
T ss_pred             CC
Confidence            85

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.7e-45  Score=308.88  Aligned_cols=299  Identities=9%  Similarity=0.034  Sum_probs=228.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCC-------cEEEEecccCce----------eeEeeecCccEEEEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDG-------CICWFDLRSKDV----------QLVTDVGNGPVTSLCF   66 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~-------~i~iw~~~~~~~----------~~~~~~~~~~v~~l~~   66 (375)
                      .|+....-..-.-||+|++|+|+ +++|++||.+.       .|++|++..+..          ...+..|...|.++++
T Consensus         3 ~m~~~~~~~~~g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~   81 (365)
T 4h5i_A            3 SMKFVTASYNVGYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA   81 (365)
T ss_dssp             -CCCCEEEEECSSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE
T ss_pred             cccceeeecCCCCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe
Confidence            34433333333468999999999 89999987543       599999875542          1235567788888876


Q ss_pred             eCCCCeEEEEc-----------CCCeEEEEECCCCCcc-ccc-----ccccCCCcceeEEEEcCCCCeEEEEe--CCCcE
Q 017194           67 KSGNEDIIYVS-----------SGKEVKSFDVHMPASW-RPL-----ESYNYNKEEINQIVCNPKSSFLACAD--DGGDV  127 (375)
Q Consensus        67 ~~~~~~l~~~~-----------~d~~i~iwd~~~~~~~-~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i  127 (375)
                      +  ++.+++++           .|+.+++|++.+.... ...     .....+...+..++|+|||+++++++  .|++|
T Consensus        82 ~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i  159 (365)
T 4h5i_A           82 S--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM  159 (365)
T ss_dssp             E--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred             C--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence            5  45566553           4678999998754321 111     11223345688999999999987554  78999


Q ss_pred             EEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194          128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                      ++||+++++.+..+.  |...|.+++|+|+|+ ++++++.+ .+++|+..+++.+......           .+...+.+
T Consensus       160 ~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~-~l~s~s~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~  224 (365)
T 4h5i_A          160 RIIDPSDLTEKFEIE--TRGEVKDLHFSTDGK-VVAYITGS-SLEVISTVTGSCIARKTDF-----------DKNWSLSK  224 (365)
T ss_dssp             EEEETTTTEEEEEEE--CSSCCCEEEECTTSS-EEEEECSS-CEEEEETTTCCEEEEECCC-----------CTTEEEEE
T ss_pred             EEeECCCCcEEEEeC--CCCceEEEEEccCCc-eEEeccce-eEEEEEeccCcceeeeecC-----------CCCCCEEE
Confidence            999999999988887  778899999999998 78888755 5667777777665443321           14678999


Q ss_pred             EeecCCccccCCCCEEEEEecCC----cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee
Q 017194          208 IAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD  283 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~  283 (375)
                      ++|+|      +++++++++.|+    .+++|++....                                    ......
T Consensus       225 v~fsp------dg~~l~~~s~d~~~~~~i~~~~~~~~~------------------------------------~~~~~~  262 (365)
T 4h5i_A          225 INFIA------DDTVLIAASLKKGKGIVLTKISIKSGN------------------------------------TSVLRS  262 (365)
T ss_dssp             EEEEE------TTEEEEEEEESSSCCEEEEEEEEETTE------------------------------------EEEEEE
T ss_pred             EEEcC------CCCEEEEEecCCcceeEEeecccccce------------------------------------ecceee
Confidence            99999      899999999887    57888877531                                    112334


Q ss_pred             eeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhh-hcccccceeeeeecCCCCCcEEE
Q 017194          284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVV  362 (375)
Q Consensus       284 ~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s  362 (375)
                      ..+.+|...|++++|+   |+|++||+|+.|++|+|||+.++         +++.. +.+|...|++++|+| ||++|||
T Consensus       263 ~~~~~~~~~V~~~~~S---pdg~~lasgs~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~fSp-dg~~laS  329 (365)
T 4h5i_A          263 KQVTNRFKGITSMDVD---MKGELAVLASNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVTISP-DSTYVAS  329 (365)
T ss_dssp             EEEESSCSCEEEEEEC---TTSCEEEEEETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEEECT-TSCEEEE
T ss_pred             eeecCCCCCeEeEEEC---CCCCceEEEcCCCEEEEEECCCC---------cEEEEecCcccCCEEEEEECC-CCCEEEE
Confidence            5677899999999999   99999999999999999999998         44444 578999999999999 9999999


Q ss_pred             eeCCCeEEEEecC
Q 017194          363 CDTSKVVKVYSIS  375 (375)
Q Consensus       363 ~~~dg~v~iw~~~  375 (375)
                      ++.|++|+||+++
T Consensus       330 ~S~D~tvrvw~ip  342 (365)
T 4h5i_A          330 VSAANTIHIIKLP  342 (365)
T ss_dssp             EETTSEEEEEECC
T ss_pred             EeCCCeEEEEEcC
Confidence            9999999999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-45  Score=317.94  Aligned_cols=339  Identities=15%  Similarity=0.132  Sum_probs=264.7

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      .+++++|+|+ +++|++++.|+.|++||+.+++....+..| ..+....|+|++++|++++.|+.|++||+.+++   ..
T Consensus        58 ~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~  132 (420)
T 3vl1_A           58 AGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL---QR  132 (420)
T ss_dssp             CCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---EE
T ss_pred             cccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---ee
Confidence            3557899999 899999999999999999988877777665 445556789999999999999999999998653   34


Q ss_pred             ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194           97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      ..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|...|.+++|+|+++ +|++++.|+.|++||+
T Consensus       133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGR-NVLSASLDGTIRLWEC  210 (420)
T ss_dssp             EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEET
T ss_pred             eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeEC
Confidence            4556789999999999999999999999999999999999999999 9999999999999998 7999999999999999


Q ss_pred             CCCCcceEEecCCCCCCC-----------CCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          177 SKGRPNKIVNFGLPENNG-----------NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      ++++.+..+.........           ......+...+.+++|+|      ++++|++++.||.|++||++++.....
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT------YGKYVIAGHVSGVITVHNVFSKEQTIQ  284 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC------TTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC------CCCEEEEEcCCCeEEEEECCCCceeEE
Confidence            999888877643110000           000011234455555666      899999999999999999999887777


Q ss_pred             ccccCCCCCCceeeccccc-ceeeee------eeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeE
Q 017194          246 SKSTTKPLKGSQSTSKVNI-RDAEME------ILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLV  317 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~-~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i  317 (375)
                      ........+.+++++|++. ++++.+      .++.....  ..+..+.. |...|.++.+    +++++|++++.|+.|
T Consensus       285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~----~~~~~l~s~~~d~~v  358 (420)
T 3vl1_A          285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF----AAGALFVSSGFDTSI  358 (420)
T ss_dssp             ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE----ETTEEEEEETTTEEE
T ss_pred             cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe----CCCCEEEEecCCccE
Confidence            7666667888999999999 665522      23333222  12334444 6778888865    578899999999999


Q ss_pred             EEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC---cEEEeeCCCeEEEEecC
Q 017194          318 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE---NLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       318 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~s~~~dg~v~iw~~~  375 (375)
                      ++|++....................|.+.|.+++|+| +++   .|++++.+|.+.+|+++
T Consensus       359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESC
T ss_pred             EEEeccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEecc
Confidence            9999987432211111122224567889999999999 888   78888889999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-45  Score=320.56  Aligned_cols=302  Identities=11%  Similarity=0.084  Sum_probs=230.5

Q ss_pred             eeecCCCceeEEEEecCC-C-------CEEEE-------------------eCCCCcEEEEecccCcee----eEeeecC
Q 017194           10 RLRGHKATATCCIASRDR-P-------GFVAS-------------------SGEDGCICWFDLRSKDVQ----LVTDVGN   58 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~-~-------~~l~s-------------------~~~d~~i~iw~~~~~~~~----~~~~~~~   58 (375)
                      .+. +.+.|.+|+|+|++ +       ++||+                   ++.|++|+||++.+++..    ..+..|.
T Consensus       129 ~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~  207 (524)
T 2j04_B          129 IYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF  207 (524)
T ss_dssp             EEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC
T ss_pred             EEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC
Confidence            444 67899999999983 1       56655                   557889999999887652    3466788


Q ss_pred             ccEEEEEEeCC------CCeEEEEcCCCeEEEEECCCCCcc--------cccccccCCCcceeEEEEcCCCCeEEEEeCC
Q 017194           59 GPVTSLCFKSG------NEDIIYVSSGKEVKSFDVHMPASW--------RPLESYNYNKEEINQIVCNPKSSFLACADDG  124 (375)
Q Consensus        59 ~~v~~l~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  124 (375)
                      +.|.+++|+|+      +.+|++++.|++|++||+.++...        .+...+.+|...|.+++|++++ .|++|+.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence            99999999996      579999999999999999865422        1233567788999999999864 89999999


Q ss_pred             CcEEEEeCcCce-eeeeEecCcccceeEE--EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC
Q 017194          125 GDVKIIDIRQHC-LYKSLRAGHSSICSSV--QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN  201 (375)
Q Consensus       125 g~i~iwd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (375)
                      |+|++||+++++ ....+. +|...|+++  .|+|++..+|++++.|++|++||++++++...+....           .
T Consensus       287 gtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-----------~  354 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-----------R  354 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-----------S
T ss_pred             CEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-----------c
Confidence            999999998764 455678 899999999  5677762389999999999999999888776665220           1


Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeE
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  281 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~  281 (375)
                      ...+.+++|+|      +++.+++++.|+.|++||++++.                                        
T Consensus       355 ~~~v~~v~fsp------~~~~l~s~~~d~tv~lwd~~~~~----------------------------------------  388 (524)
T 2j04_B          355 GSNLVPVVYCP------QIYSYIYSDGASSLRAVPSRAAF----------------------------------------  388 (524)
T ss_dssp             CCSCCCEEEET------TTTEEEEECSSSEEEEEETTCTT----------------------------------------
T ss_pred             cCcccceEeCC------CcCeEEEeCCCCcEEEEECcccc----------------------------------------
Confidence            13478899999      79999999999999999998742                                        


Q ss_pred             eeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce--------------ee-e---ec------------
Q 017194          282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ--------------GV-Q---TS------------  331 (375)
Q Consensus       282 ~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------~~-~---~~------------  331 (375)
                      +...+.+|...|++++|+   |+|++|++|+.||+|++||+....              .+ .   ..            
T Consensus       389 ~~~~l~gH~~~V~sva~S---p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~  465 (524)
T 2j04_B          389 AVHPLVSRETTITAIGVS---RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYE  465 (524)
T ss_dssp             CCEEEEECSSCEEEEECC---SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCC
T ss_pred             cceeeecCCCceEEEEeC---CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCce
Confidence            223566899999999999   999999999999999999964320              00 0   00            


Q ss_pred             -----chhhhhhhhcccccceeeeeecCCCC---CcEEEeeCCCeEEEEecC
Q 017194          332 -----INNDLLIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       332 -----~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~v~iw~~~  375 (375)
                           ..+..+..+.+|...|.+++|+| ++   ..|++|+.||.|+||++.
T Consensus       466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          466 VYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECS
T ss_pred             ecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEcc
Confidence                 01344566778999999999999 64   589999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-44  Score=335.50  Aligned_cols=348  Identities=11%  Similarity=0.045  Sum_probs=250.4

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      ..+|.+.|++++|+|+ +++||+|+.||+|+||+..+.+....+. |..+|.+++|+| +++|++++.|++|++||++++
T Consensus        13 ~~gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             ccCCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            4589999999999999 8999999999999999998777655544 788999999999 889999999999999999987


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee-----------eeEecCcccceeEEEEeeCCC
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-----------KSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      +....+.    |...|++++|+|++++|++|+.||.|++||+++++..           ..+. +|...|.+++|+|++.
T Consensus        90 ~~~~~~~----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           90 KVLTTVF----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             SEEEEEE----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETTEE
T ss_pred             cEEEEEc----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccCCC
Confidence            6544442    4678999999999999999999999999999987653           2335 7889999999999754


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCC-----CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN-----AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                      ..+++|+.|+.| +||+++++.+..+....+.....     .....|...|.+++|+|      ++++|++++.||.|++
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp------dg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP------NSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT------TSSEEEEEETTCCEEE
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC------CCCEEEEEECCCeEEE
Confidence            479999999999 99999998887776331110000     00112346799999999      8999999999999999


Q ss_pred             EeCCCcceeec--cc----c-----------cCCCCCCceeec----ccccceeeeeeeec---------CC--------
Q 017194          235 INIESELNISR--SK----S-----------TTKPLKGSQSTS----KVNIRDAEMEILDQ---------SG--------  276 (375)
Q Consensus       235 ~d~~~~~~~~~--~~----~-----------~~~~~~~~~~~s----~~g~~~~~~~~~~~---------~~--------  276 (375)
                      ||+++++....  ..    .           .....+..++|+    |++..+++.+..+.         ..        
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~  317 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS  317 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence            99998765432  10    0           012235566664    44333322221100         00        


Q ss_pred             ----------------------------------------------c---------ceeEee---------------eee
Q 017194          277 ----------------------------------------------G---------KRLHLD---------------YSV  286 (375)
Q Consensus       277 ----------------------------------------------~---------~~~~~~---------------~~~  286 (375)
                                                                    .         ..+...               ..+
T Consensus       318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l  397 (902)
T 2oaj_A          318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL  397 (902)
T ss_dssp             GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred             ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence                                                          0         000000               011


Q ss_pred             cCCCccEEEEEEee-------------------------------cCCCCcEEEEecCCCeEEEEeCCCceeeeec-chh
Q 017194          287 GGHTAAASCVAFSM-------------------------------FGERGKYLISGGNDKLVKVWDCSRFQGVQTS-INN  334 (375)
Q Consensus       287 ~~~~~~v~~~~~s~-------------------------------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~  334 (375)
                      ..|...|+++++++                               +.|++++|++|+.|++|++||+.++...... ...
T Consensus       398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~  477 (902)
T 2oaj_A          398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV  477 (902)
T ss_dssp             TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred             cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence            22334455555421                               1278999999999999999999887310000 000


Q ss_pred             hh-hhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          335 DL-LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       335 ~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .. .....+|...|.+++|+| ++++||+|+.||+|+||++
T Consensus       478 ~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~  517 (902)
T 2oaj_A          478 NLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKY  517 (902)
T ss_dssp             EHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEE
T ss_pred             echhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEe
Confidence            00 000127889999999999 9999999999999999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-43  Score=321.87  Aligned_cols=354  Identities=12%  Similarity=0.103  Sum_probs=272.9

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCC-EEEEeCCCCcEEEEecccCceeeEeeecCc---cEEEEEEeCC-CCeEEEEcC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNG---PVTSLCFKSG-NEDIIYVSS   78 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~~~~~   78 (375)
                      +++.+..+.+|.+.|++++|+|+ ++ ++++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ +++|++++.
T Consensus       149 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          149 SGNSLGEVSGHSQRINACHLKQS-RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSS-SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             CCCcceeeecCCccEEEEEECCC-CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            34566788899999999999999 55 899999999999999999999999999999   9999999999 999999999


Q ss_pred             CCeEEEEECCCCCccccc-ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc----ccceeEEE
Q 017194           79 GKEVKSFDVHMPASWRPL-ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH----SSICSSVQ  153 (375)
Q Consensus        79 d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~  153 (375)
                      |+.|++||+.+++....+ .....|...|.+++|+ ++++|++++.|+.|++||+++++.+..+. .+    ...+.++.
T Consensus       228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~  305 (615)
T 1pgu_A          228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVV  305 (615)
T ss_dssp             TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEE
T ss_pred             CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcccCceeEEE
Confidence            999999999876544433 2111678999999999 99999999999999999999999988888 55    46788888


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCC------------CCC--------cccCCCceeEEeecCC
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNG------------NAG--------QCYNPAFVHAIAIPDA  213 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~------------~~~--------~~~~~~~v~~~~~~~~  213 (375)
                      |. ++. .+++++.|+.|++||+++++.+..+..+......            ..-        ...|...|.++++.+.
T Consensus       306 ~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~  383 (615)
T 1pgu_A          306 AT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA  383 (615)
T ss_dssp             EE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST
T ss_pred             eC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC
Confidence            86 666 7999999999999999987666555422100000            000        0113344445554221


Q ss_pred             cc------------cc----------------CC--------------------------------------CCEEEEEe
Q 017194          214 DM------------LD----------------KT--------------------------------------NKICVVAK  227 (375)
Q Consensus       214 ~~------------~~----------------~~--------------------------------------~~~l~~~~  227 (375)
                      ..            ++                ++                                      ++++++++
T Consensus       384 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  463 (615)
T 1pgu_A          384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL  463 (615)
T ss_dssp             TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred             cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee
Confidence            00            00                00                                      55677777


Q ss_pred             c-CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee---eeecCCcceeEeeeeecC-CCccEEEEEEeecC
Q 017194          228 G-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFG  302 (375)
Q Consensus       228 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~  302 (375)
                      . ||.|++||+.+..............+.+++++|+|+++++.+   ....++....+.+..+.+ |...|.+++|+   
T Consensus       464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s---  540 (615)
T 1pgu_A          464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK---  540 (615)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC---
T ss_pred             cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEc---
Confidence            7 788888888765443222333456778899999999998742   233333334455667777 99999999999   


Q ss_pred             C----------CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          303 E----------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       303 ~----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                      |          ++++|++++.||.|++||+.++.        +.+..+.+|...|.+++|+| +++ |++++.||.|++|
T Consensus       541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw  610 (615)
T 1pgu_A          541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRW  610 (615)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEE
T ss_pred             CccccccccccCCCEEEEEcCCCcEEEEECCCCc--------eechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEE
Confidence            8          99999999999999999999863        34456788999999999999 888 9999999999999


Q ss_pred             ecC
Q 017194          373 SIS  375 (375)
Q Consensus       373 ~~~  375 (375)
                      +++
T Consensus       611 ~~~  613 (615)
T 1pgu_A          611 NVV  613 (615)
T ss_dssp             EEC
T ss_pred             eee
Confidence            985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-45  Score=316.33  Aligned_cols=295  Identities=13%  Similarity=0.164  Sum_probs=246.7

Q ss_pred             CCCceeEEEEecCCCCEEEEe----------CCCCcEEEEecccCc---eeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194           14 HKATATCCIASRDRPGFVASS----------GEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~----------~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      +...|.+++|+|++..+|++|          +.|+.|++||+.+++   .+..+ .|...|.+++|+|++++|++++.|+
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            346799999999933499999          899999999999876   33334 4889999999999999999999999


Q ss_pred             eEEEEECCCCCc-ccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCce------eeee---EecCcccce
Q 017194           81 EVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHC------LYKS---LRAGHSSIC  149 (375)
Q Consensus        81 ~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~---~~~~~~~~v  149 (375)
                      .|++||+.+... ...+..+.+|...|.+++|+|+ +++|++++.|+.|++||+++++      ....   +. .|...|
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v  168 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEV  168 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc-CCCCCe
Confidence            999999986322 2356667788999999999998 8999999999999999999876      3222   34 788999


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC-CEEEEEec
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKG  228 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~  228 (375)
                      .+++|+|++..+|++++.|+.|++||+++++.+..+....+       ...+...+.+++|+|      ++ .++++++.
T Consensus       169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~------~~~~~l~~~~~  235 (416)
T 2pm9_A          169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP-------NSGIKQQLSVVEWHP------KNSTRVATATG  235 (416)
T ss_dssp             CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC-------SSCCCCCEEEEEECS------SCTTEEEEEEC
T ss_pred             eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc-------ccccCCceEEEEECC------CCCCEEEEEEC
Confidence            99999999544899999999999999999988877764310       001257899999999      55 68999999


Q ss_pred             CC---cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec-CCCccEEEEEEeecCC-
Q 017194          229 DG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGE-  303 (375)
Q Consensus       229 dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-  303 (375)
                      |+   .|++||+++..                                       .....+. +|...|.+++|+   | 
T Consensus       236 d~~~~~i~~~d~~~~~---------------------------------------~~~~~~~~~~~~~v~~~~~s---~~  273 (416)
T 2pm9_A          236 SDNDPSILIWDLRNAN---------------------------------------TPLQTLNQGHQKGILSLDWC---HQ  273 (416)
T ss_dssp             CSSSCCCCEEETTSTT---------------------------------------SCSBCCCSCCSSCEEEEEEC---SS
T ss_pred             CCCCceEEEEeCCCCC---------------------------------------CCcEEeecCccCceeEEEeC---CC
Confidence            98   99999999742                                       1223555 789999999999   7 


Q ss_pred             CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCC-CcEEEeeCCCeEEEEecC
Q 017194          304 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       304 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~v~iw~~~  375 (375)
                      ++++|++++.||.|++||+.++         +.+..+.+|...|.+++|+| ++ ++|++++.||.|++|+++
T Consensus       274 ~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          274 DEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             CSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESC
T ss_pred             CCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEcc
Confidence            9999999999999999999998         55667778999999999999 76 899999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-43  Score=297.59  Aligned_cols=251  Identities=15%  Similarity=0.275  Sum_probs=222.4

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc----eeeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      +++.+..+..|...|.+++|+|+ +++|++|+.|+.|++|++.+++    ....+.+|...|.++.|++++. +++++.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d  163 (340)
T 1got_B           86 TTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD  163 (340)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT
T ss_pred             CCCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC
Confidence            45567788899999999999999 8999999999999999998753    4566788999999999998875 8899999


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      +.|++||+++++   .+..+.+|...|.+++|+|+++++++|+.|+.|++||+++++.+..+. +|...|.+++|+|+++
T Consensus       164 ~~i~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~  239 (340)
T 1got_B          164 TTCALWDIETGQ---QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN  239 (340)
T ss_dssp             SCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSS
T ss_pred             CcEEEEECCCCc---EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCC
Confidence            999999998754   445567789999999999999999999999999999999999999999 9999999999999998


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                       +|++++.|++|++||+++++.+..+....           +...|.+++|+|      ++++|++|+.||.|++||+.+
T Consensus       240 -~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~------~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          240 -AFATGSDDATCRLFDLRADQELMTYSHDN-----------IICGITSVSFSK------SGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCTT-----------CCSCEEEEEECT------TSSEEEEEETTSEEEEEETTT
T ss_pred             -EEEEEcCCCcEEEEECCCCcEEEEEccCC-----------cccceEEEEECC------CCCEEEEECCCCeEEEEEccc
Confidence             79999999999999999888776664220           234799999999      899999999999999999986


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      .                                        .....+.+|...|.+++|+   |+|++|++|+.|+.|+|
T Consensus       302 ~----------------------------------------~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~D~~i~i  338 (340)
T 1got_B          302 A----------------------------------------DRAGVLAGHDNRVSCLGVT---DDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             C----------------------------------------CEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSCEEE
T ss_pred             C----------------------------------------cEeeEeecCCCcEEEEEEc---CCCCEEEEEcCCccEEe
Confidence            4                                        2344678999999999999   99999999999999999


Q ss_pred             Ee
Q 017194          320 WD  321 (375)
Q Consensus       320 wd  321 (375)
                      ||
T Consensus       339 Wd  340 (340)
T 1got_B          339 WN  340 (340)
T ss_dssp             EC
T ss_pred             cC
Confidence            97

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-43  Score=329.60  Aligned_cols=295  Identities=16%  Similarity=0.233  Sum_probs=260.8

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .+..+.+++|.+.|.+++|+|+ +++||+++.||.|+|||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|++
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v   81 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             cccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            4566889999999999999999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEee-CCCcEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIP-WKPWEV  162 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~l  162 (375)
                      ||+.+++.   +..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+. +|...|.+++|+| ++. .+
T Consensus        82 w~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~-~l  156 (814)
T 3mkq_A           82 FNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPS-TF  156 (814)
T ss_dssp             EETTTCCE---EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEE-EE
T ss_pred             EECCCCcE---EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCC-EE
Confidence            99987643   4455668899999999999999999999999999999987 6677788 8999999999999 666 89


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ++++.||.|++||+++++....+..+            +...+..++|+|    .+++.++++++.||.|++||+.++  
T Consensus       157 ~~~~~dg~v~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~----~~~~~~l~~~~~dg~i~~~d~~~~--  218 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTG------------QERGVNYVDYYP----LPDKPYMITASDDLTIKIWDYQTK--  218 (814)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECC------------CTTCCCEEEECC----STTCCEEEEECTTSEEEEEETTTT--
T ss_pred             EEEeCCCeEEEEECCCCcceeEEecC------------CCCCEEEEEEEE----CCCCCEEEEEeCCCEEEEEECCCC--
Confidence            99999999999999998888887755            457899999988    346899999999999999999864  


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                            ..+..+.+|...|.+++|+   |++++|++++.||.|++||+
T Consensus       219 --------------------------------------~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          219 --------------------------------------SCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNS  257 (814)
T ss_dssp             --------------------------------------EEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEET
T ss_pred             --------------------------------------cEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCeEEEEEC
Confidence                                                  3445677899999999999   99999999999999999999


Q ss_pred             CCceeeeecchhhhhhhhcccccceeeeeecCCCCCc-EEEeeCCCeEEEEec
Q 017194          323 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN-LVVCDTSKVVKVYSI  374 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~v~iw~~  374 (375)
                      .++         ..+..+..|...+.+++|+| ++.. +++++.|+.+.+|++
T Consensus       258 ~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          258 STY---------KVEKTLNVGLERSWCIATHP-TGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             TTC---------SEEEEECCSSSSEEEEEECT-TCGGGEEEEEETTEEEEEEC
T ss_pred             CCC---------cEEEEeecCCCcEEEEEEcc-CCCceEEEEEeCCCEEEEEc
Confidence            998         55566778889999999999 6653 366666777888875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.1e-43  Score=317.04  Aligned_cols=330  Identities=16%  Similarity=0.166  Sum_probs=261.6

Q ss_pred             CCCeeeecCCCc-eeEEEEec--CCCCEEEEeCCCCcEEEEecccC--------ceeeEeeecCccEEEEEEeCCCCeEE
Q 017194            6 AKPRRLRGHKAT-ATCCIASR--DRPGFVASSGEDGCICWFDLRSK--------DVQLVTDVGNGPVTSLCFKSGNEDII   74 (375)
Q Consensus         6 ~~~~~l~~h~~~-i~~~~~~~--~~~~~l~s~~~d~~i~iw~~~~~--------~~~~~~~~~~~~v~~l~~~~~~~~l~   74 (375)
                      +.+..+.+|.+. |++++|+|  + +++|++|+.||.|++||+.++        +....+..|..+|.+++|+|++++|+
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence            677889999999 99999999  8 899999999999999999755        66778888999999999999999999


Q ss_pred             EEcCC----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEecCccc--
Q 017194           75 YVSSG----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSS--  147 (375)
Q Consensus        75 ~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--  147 (375)
                      +++.+    +.|++||..     ..+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+. +|..  
T Consensus       133 ~~~~~~~~~~~v~~~d~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~  206 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWDSG-----NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQG  206 (615)
T ss_dssp             EEECCSSCSEEEEETTTC-----CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTT
T ss_pred             EeccCCCCccEEEEEECC-----CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCC
Confidence            99987    688888832     34556677899999999999998 79999999999999999999999999 8998  


Q ss_pred             -ceeEEEEeeC-CCcEEEEeecCCeEEEeeCCCCCcceEEec---CCCCCCCCCCcccCCCceeEEeecCCccccCCCCE
Q 017194          148 -ICSSVQFIPW-KPWEVISGGLDSKLVMWDFSKGRPNKIVNF---GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI  222 (375)
Q Consensus       148 -~v~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  222 (375)
                       .|.+++|+|+ ++ ++++++.|+.|++||+++++.+..+..   .            |...|.+++|+ .      +++
T Consensus       207 ~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~~v~~~~~~-~------~~~  266 (615)
T 1pgu_A          207 SFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEP------------VQGGIFALSWL-D------SQK  266 (615)
T ss_dssp             CCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBC------------CCSCEEEEEES-S------SSE
T ss_pred             ceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccc------------cCCceEEEEEc-C------CCE
Confidence             9999999999 87 799999999999999999988877732   3            56789999997 3      778


Q ss_pred             EEEEecCCcEEEEeCCCcceeeccccc--------------------------------------------C--------
Q 017194          223 CVVAKGDGVVDVINIESELNISRSKST--------------------------------------------T--------  250 (375)
Q Consensus       223 l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------------------------------~--------  250 (375)
                      |++++.||.|++||+++++........                                            .        
T Consensus       267 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~  346 (615)
T 1pgu_A          267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT  346 (615)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence            888888888888888765433322111                                            0        


Q ss_pred             -------------------------CCCCCceeecccccceeeee------eee--------------------------
Q 017194          251 -------------------------KPLKGSQSTSKVNIRDAEME------ILD--------------------------  273 (375)
Q Consensus       251 -------------------------~~~~~~~~~s~~g~~~~~~~------~~~--------------------------  273 (375)
                                               ...+.++++ +++..+++.+      .++                          
T Consensus       347 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  425 (615)
T 1pgu_A          347 VNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN  425 (615)
T ss_dssp             TTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred             ecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence                                     011111222 1122222210      000                          


Q ss_pred             ---------------------------------------------cCCcceeEee-eeecCCCccEEEEEEeecCCCCcE
Q 017194          274 ---------------------------------------------QSGGKRLHLD-YSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       274 ---------------------------------------------~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                                                                   .++....... ..+.+|...|.+++|+   |++++
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~  502 (615)
T 1pgu_A          426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS---PSETY  502 (615)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC---TTSSE
T ss_pred             CCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC---CCCCE
Confidence                                                         0000011111 5567789999999999   99999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc-cccceeeeeecCC---------CCCcEEEeeCCCeEEEEecC
Q 017194          308 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPT---------ESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       308 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~---------~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |++++.||.|++||+.++         +.+..+.+ |...|++++|+|.         ++++|++++.||.|++|+++
T Consensus       503 l~~~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  571 (615)
T 1pgu_A          503 IAAGDVMGKILLYDLQSR---------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  571 (615)
T ss_dssp             EEEEETTSCEEEEETTTT---------EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             EEEcCCCCeEEEeeCCCC---------cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence            999999999999999998         44555666 9999999999984         78999999999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.5e-43  Score=293.32  Aligned_cols=256  Identities=17%  Similarity=0.249  Sum_probs=221.2

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      .++.+++|...|.+++|+|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||
T Consensus        57 ~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             cceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            46678999999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCC------CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPK------SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      ++.    ..+..+.+|...|.++.|.|.      +..+++++.|+.|++||+++.+....+. +|...|.+++|+|+++ 
T Consensus       136 ~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~-  209 (319)
T 3frx_A          136 IKG----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGT-  209 (319)
T ss_dssp             TTS----CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSS-
T ss_pred             CCC----CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCC-
Confidence            973    345566778999999999985      4489999999999999999999988998 9999999999999998 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      +|++++.|+.|++||+++++.+..+..              ...+.+++|+|      ++.++++++.+ .+++|++...
T Consensus       210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~sp------~~~~la~~~~~-~i~v~~~~~~  268 (319)
T 3frx_A          210 LIASAGKDGEIMLWNLAAKKAMYTLSA--------------QDEVFSLAFSP------NRYWLAAATAT-GIKVFSLDPQ  268 (319)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEEC--------------CSCEEEEEECS------SSSEEEEEETT-EEEEEEETTE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecC--------------CCcEEEEEEcC------CCCEEEEEcCC-CcEEEEeCcC
Confidence            799999999999999999988888773              36899999999      79998888765 5999999864


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      .........                                .......|...+.+++|+   |+|++|++|+.||.|++|
T Consensus       269 ~~~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~s---pdg~~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          269 YLVDDLRPE--------------------------------FAGYSKAAEPHAVSLAWS---ADGQTLFAGYTDNVIRVW  313 (319)
T ss_dssp             EEEEEECCC--------------------------------CTTCCGGGCCCEEEEEEC---TTSSEEEEEETTSCEEEE
T ss_pred             eeeeccCcc--------------------------------ccccccCcCcceeEEEEC---CCCCEEEEeecCceEEEE
Confidence            322111100                                000123456789999999   999999999999999999


Q ss_pred             eCCCc
Q 017194          321 DCSRF  325 (375)
Q Consensus       321 d~~~~  325 (375)
                      |+.+.
T Consensus       314 d~~t~  318 (319)
T 3frx_A          314 QVMTA  318 (319)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            98764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.4e-43  Score=302.55  Aligned_cols=312  Identities=13%  Similarity=0.120  Sum_probs=245.9

Q ss_pred             CCCCCeeeecCCCceeEEEEec-CCCCEEEEeCCCCcEEEEecccCceeeEee-------------ecCccEEEEEEeC-
Q 017194            4 AEAKPRRLRGHKATATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTD-------------VGNGPVTSLCFKS-   68 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-------------~~~~~v~~l~~~~-   68 (375)
                      +.+....+++|.++|++++|+| + +++|++|+.||.|++||+.+++....+.             +|...|.+++|+| 
T Consensus        32 ~~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           32 LNKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             ECTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             cCcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence            3455677889999999999999 7 8999999999999999999887655543             4899999999999 


Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC---CCeEEEEeCCCcEEEEeCcCceeeeeEecCc
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCLYKSLRAGH  145 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  145 (375)
                      ++.+|++++.|+.|++||+.+++....+.    +...+.++.++|.   +.++++++.++.|++||+++++.+..+. .|
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~  185 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GH  185 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CC
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CC
Confidence            77899999999999999999765443333    3678999999984   4599999999999999999999999999 99


Q ss_pred             ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCC--CCCcccCCCceeEEeecCCccccCCCCE
Q 017194          146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNG--NAGQCYNPAFVHAIAIPDADMLDKTNKI  222 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~  222 (375)
                      ...|.+++|+|++++++++++.||.|++||++++. .+..+.........  ......+...|.+++|+|      ++++
T Consensus       186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~  259 (408)
T 4a11_B          186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS------DGLH  259 (408)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT------TSSE
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC------CCCE
Confidence            99999999999998679999999999999998876 34443221111000  111223678899999999      7999


Q ss_pred             EEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecC
Q 017194          223 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG  302 (375)
Q Consensus       223 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  302 (375)
                      |++++.||.|++||+.+++........                                   ........+......   
T Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~---  301 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGENTLVNYGK-----------------------------------VCNNSKKGLKFTVSC---  301 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCBCCCCCCC-----------------------------------CCCCCSSCCCCEECC---
T ss_pred             EEEecCCCeEEEEECCCCccceecccc-----------------------------------ccccccccceeEEec---
Confidence            999999999999999986433221111                                   000001111111112   


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          303 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       303 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ..+..+++++.|+.|++||+.++         +.+..+.+|...|.+++|+| ++++|++++.||.|++|+++
T Consensus       302 ~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          302 GCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             SSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEC
T ss_pred             CCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCC
Confidence            34556777788999999999998         56667788999999999999 99999999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-43  Score=296.57  Aligned_cols=271  Identities=18%  Similarity=0.233  Sum_probs=217.2

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      .+|.+.|++++|+|+ +++|++|+.|++|++|++.++.  .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus        58 ~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             cccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            689999999999999 8999999999999999988764  5678889999999999999999999999999999999987


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce--eeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      +.....+..+..|...|.+++|+|++++|++++.|+.|++||.++++  ....+. +|...|.+++|+|+++ +|++++.
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~-~l~s~s~  214 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQ-RLASCSD  214 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSS-EEEEEET
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCC-EEEEEeC
Confidence            76666677778899999999999999999999999999999998775  456778 9999999999999998 7999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCC---CCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNG---NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      |++|++||.........+.........   ......|...|.+++|+|      ++..|++++.|+.|++|+........
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~------~~~~l~s~~~d~~i~vw~~~~~~~~~  288 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ------LTGALATACGDDAIRVFQEDPNSDPQ  288 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT------TTCCEEEEETTSCEEEEEECTTSCTT
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec------CCCEEEEEeCCCeEEEEEeCCCCCcc
Confidence            999999997433211100000000000   000012567899999999      79999999999999999987532110


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCccee-EeeeeecCCCccEEEEEEeecCCCC-cEEEEecCCCeEEEEeC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL-HLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDC  322 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~s~~~dg~i~iwd~  322 (375)
                      .                                ... .......+|...|++++|+   |++ .+||+|+.||.|++|++
T Consensus       289 ~--------------------------------~~~~~~~~~~~~h~~~V~~v~~~---p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          289 Q--------------------------------PTFSLTAHLHQAHSQDVNCVAWN---PKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             S--------------------------------CCEEEEEEETTSSSSCEEEEEEC---SSSTTEEEEEETTSCEEEEEE
T ss_pred             e--------------------------------eeEEEEeeecccccCcEeEeEEe---CCCceEEEEcCCCCcEEEEEe
Confidence            0                                001 1123456899999999999   877 59999999999999999


Q ss_pred             CCce
Q 017194          323 SRFQ  326 (375)
Q Consensus       323 ~~~~  326 (375)
                      .+.+
T Consensus       334 ~~~~  337 (345)
T 3fm0_A          334 QRPE  337 (345)
T ss_dssp             CC--
T ss_pred             cCCC
Confidence            9874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.8e-43  Score=287.76  Aligned_cols=256  Identities=14%  Similarity=0.215  Sum_probs=213.2

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc--CceeeEeeecCccEEEEEEeCC--CCeEEEEcCCCeEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--KDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVK   83 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~d~~i~   83 (375)
                      +..+.+|.+.|++++|+|+ +++||+|+.|++|+|||+..  .+.+..+.+|..+|.+++|+++  +++|++++.|++|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            4567899999999999999 89999999999999999974  3667889999999999999863  88999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCce--eeeeEecCcccceeEEEEeeC--
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPW--  157 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--  157 (375)
                      +||+++++ ...+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+. +|...|.+++|+|+  
T Consensus        81 iWd~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           81 IWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATI  158 (297)
T ss_dssp             EEEBSSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC-
T ss_pred             EEEcCCCc-eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcc
Confidence            99998653 2344556678999999999997  8899999999999999998753  245567 89999999999997  


Q ss_pred             -----------CCcEEEEeecCCeEEEeeCCCCCc----ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC---
Q 017194          158 -----------KPWEVISGGLDSKLVMWDFSKGRP----NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---  219 (375)
Q Consensus       158 -----------~~~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---  219 (375)
                                 ++ +|++|+.|++|++||+++++.    ...+. +            |...|.+++|+|      +   
T Consensus       159 ~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~------------H~~~V~~v~~sp------~~~~  218 (297)
T 2pm7_B          159 EEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-G------------HSDWVRDVAWSP------TVLL  218 (297)
T ss_dssp             -----------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-C------------CSSCEEEEEECC------CCSS
T ss_pred             cccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-C------------CCCceEEEEECC------CCCC
Confidence                       34 799999999999999987763    23333 2            578999999999      5   


Q ss_pred             CCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194          220 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS  299 (375)
Q Consensus       220 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  299 (375)
                      +.+|++++.|+.|++||+.+....                                   ..........|...|.+++|+
T Consensus       219 ~~~las~s~D~~v~iWd~~~~~~~-----------------------------------~~~~~~~~~~~~~~v~~~~~s  263 (297)
T 2pm7_B          219 RSYMASVSQDRTCIIWTQDNEQGP-----------------------------------WKKTLLKEEKFPDVLWRASWS  263 (297)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSC-----------------------------------CEEEESSSSCCSSCEEEEEEC
T ss_pred             ceEEEEEECCCcEEEEEeCCCCCc-----------------------------------cceeeeecccCCCcEEEEEEC
Confidence            489999999999999998763110                                   001111224678899999999


Q ss_pred             ecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          300 MFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       300 ~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                         |++++|++++.||.|++|+...
T Consensus       264 ---~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          264 ---LSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ---SSSCCEEEEETTSCEEEEEECT
T ss_pred             ---CCCCEEEEEcCCCcEEEEEECC
Confidence               9999999999999999999764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-43  Score=325.91  Aligned_cols=347  Identities=11%  Similarity=0.041  Sum_probs=260.7

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      .|..+|.+++|+|  +++|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+++++.
T Consensus        56 ~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           56 EDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             SSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            4788999999999  4699999999999999999999888886 678999999999999999999999999999987653


Q ss_pred             cc-cc-------ccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCc------------------
Q 017194           93 WR-PL-------ESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGH------------------  145 (375)
Q Consensus        93 ~~-~~-------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------  145 (375)
                      .. .+       ....+|.++|.+++|+|+ +..+++|+.||.| +||+++++.+..+. .|                  
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~h  210 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI-YELPPFAPGGDFSEKTNEKR  210 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC-CCBCTTCCCSTTCCCTTSCB
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe-cccCCcCCCccccccccccc
Confidence            20 00       334678899999999996 4789999999999 99999999888886 55                  


Q ss_pred             ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec-----C--------------------------CCCC--
Q 017194          146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-----G--------------------------LPEN--  192 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----~--------------------------~~~~--  192 (375)
                      ...|++++|+|++. +|++++.|+.|++||+++++++....+     +                          .|+.  
T Consensus       211 ~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~  289 (902)
T 2oaj_A          211 TPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS  289 (902)
T ss_dssp             CCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred             CCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence            47799999999998 799999999999999987765432100     0                          0000  


Q ss_pred             ------CCC-----C-----------------------------Cc----------------------------------
Q 017194          193 ------NGN-----A-----------------------------GQ----------------------------------  198 (375)
Q Consensus       193 ------~~~-----~-----------------------------~~----------------------------------  198 (375)
                            ...     .                             ..                                  
T Consensus       290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~  369 (902)
T 2oaj_A          290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL  369 (902)
T ss_dssp             EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred             EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence                  000     0                             00                                  


Q ss_pred             -----------------c-----------cCCCceeEEeecCC----------------------------ccccCCCCE
Q 017194          199 -----------------C-----------YNPAFVHAIAIPDA----------------------------DMLDKTNKI  222 (375)
Q Consensus       199 -----------------~-----------~~~~~v~~~~~~~~----------------------------~~~~~~~~~  222 (375)
                                       +           .+...|+++++++.                            ..+.+++++
T Consensus       370 ~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~  449 (902)
T 2oaj_A          370 ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA  449 (902)
T ss_dssp             EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE
T ss_pred             EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE
Confidence                             0           00011222222110                            011357889


Q ss_pred             EEEEecCCcEEEEeCCCcceeec--cc--------ccCCCCCCceeecccccceeeee------eeecCCcc--------
Q 017194          223 CVVAKGDGVVDVINIESELNISR--SK--------STTKPLKGSQSTSKVNIRDAEME------ILDQSGGK--------  278 (375)
Q Consensus       223 l~~~~~dg~i~i~d~~~~~~~~~--~~--------~~~~~~~~~~~~s~~g~~~~~~~------~~~~~~~~--------  278 (375)
                      |++|+.|++|++||+.++.....  ..        ......+.+++|+|||+++++.+      .|+.....        
T Consensus       450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~  529 (902)
T 2oaj_A          450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP  529 (902)
T ss_dssp             EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred             EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence            99999999999999987642110  00        13345688999999999998732      23322110        


Q ss_pred             ----------------------------------eeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          279 ----------------------------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       279 ----------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                                        .++++..+.+|...|++++||   ||| +||+|+.|++|+|||+++
T Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafS---pdG-~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNS---NIG-FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEEC---BTS-EEEEEETTSEEEEEETTT
T ss_pred             CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEec---CCc-EEEEEeCCCcEEEEECCC
Confidence                                              124567888999999999999   999 999999999999999988


Q ss_pred             ceeeeecchhhhhhhhc-ccccceeeeeec-----CCCC---CcEEEeeCCCeEEEEec
Q 017194          325 FQGVQTSINNDLLIKNI-NLNKKVNWLCTT-----PTES---ENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~~---~~l~s~~~dg~v~iw~~  374 (375)
                      ......    ..+..+. +|...|++++|+     | ||   ++|++++.|++|++|++
T Consensus       606 ~~~~~~----~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          606 PAIIYM----ENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TEEEEE----EEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred             CeEEEE----eehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEE
Confidence            643211    0113454 899999999999     8 64   89999999999999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.3e-43  Score=299.76  Aligned_cols=286  Identities=15%  Similarity=0.177  Sum_probs=236.9

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      .+|...+.+..+.++ +..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus        88 ~~~~~~~~~~~~~~s-~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           88 PGIIDDYYLNLLDWS-NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             TTCCCCTTCBCEEEC-TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCcCCceEEEEeec-CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            366666444334433 34577888999999999999998877776 7899999999999999999999999999999876


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc-CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      +   .+..+.+|...|.+++|  +++++++++.||.|++||++ ....+..+. +|...|.+++|+|++. +|++++.|+
T Consensus       167 ~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~  239 (401)
T 4aez_A          167 T---KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGL-QLASGGNDN  239 (401)
T ss_dssp             C---EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             e---EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCC-EEEEEeCCC
Confidence            4   34455578999999999  45799999999999999998 566778888 8999999999999998 799999999


Q ss_pred             eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe--cCCcEEEEeCCCcceeeccc
Q 017194          170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSK  247 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~  247 (375)
                      .|++||+++++....+..             +...|.+++|+|.     ...++++++  .|+.|++||+.++.      
T Consensus       240 ~v~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~p~-----~~~ll~~~~gs~d~~i~i~d~~~~~------  295 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTN-------------HNAAVKAVAWCPW-----QSNLLATGGGTMDKQIHFWNAATGA------  295 (401)
T ss_dssp             CEEEEETTCSSEEEEECC-------------CSSCCCEEEECTT-----STTEEEEECCTTTCEEEEEETTTCC------
T ss_pred             eEEEccCCCCCccEEecC-------------CcceEEEEEECCC-----CCCEEEEecCCCCCEEEEEECCCCC------
Confidence            999999999888777653             4678999999993     345666655  79999999998742      


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE--ecCCCeEEEEeCCCc
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRF  325 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s--~~~dg~i~iwd~~~~  325 (375)
                                                        .+..+. +...|.+++|+   |++++|++  |+.||.|++||+.++
T Consensus       296 ----------------------------------~~~~~~-~~~~v~~~~~s---~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          296 ----------------------------------RVNTVD-AGSQVTSLIWS---PHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             ----------------------------------EEEEEE-CSSCEEEEEEC---SSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             ----------------------------------EEEEEe-CCCcEEEEEEC---CCCCeEEEEeecCCCcEEEEecCCc
Confidence                                              222332 45789999999   99999998  558999999999986


Q ss_pred             eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ..       .....+.+|...|.+++|+| ++++|++++.||.|++|++.
T Consensus       338 ~~-------~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          338 GL-------TKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             EE-------EEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEEECC
T ss_pred             cc-------eeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECC
Confidence            43       22234568999999999999 99999999999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-43  Score=344.90  Aligned_cols=349  Identities=15%  Similarity=0.136  Sum_probs=282.6

Q ss_pred             CCCCCeeeecCCCceeEEEEecC-CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      +++.+..+.+|...|.+++|+|+ ++.++++|+.|+.|++||+.+++....+.+|...|.+++|+|+++++++++.||.|
T Consensus       688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            56778889999999999999995 25689999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCcccccc----------------------------------------------------cccCCCcceeEEE
Q 017194           83 KSFDVHMPASWRPLE----------------------------------------------------SYNYNKEEINQIV  110 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~----------------------------------------------------~~~~~~~~v~~~~  110 (375)
                      ++||+.+++....+.                                                    ...+|...|.+++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            999987653222111                                                    0125778899999


Q ss_pred             EcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc---------
Q 017194          111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---------  181 (375)
Q Consensus       111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------  181 (375)
                      |+|+++++++++.||.|++||+.+++.+..+. +|...|.+++|+|+++ .+++++.|+.|++||+.+...         
T Consensus       848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~  925 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQE  925 (1249)
T ss_dssp             ECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCC-EEEEEeCCCeEEEEEccccceeeeecccce
Confidence            99999999999999999999999999999999 9999999999999998 799999999999999653100         


Q ss_pred             --------------------------------------ceEEecCC-------------------CCCCCCCCcccCCCc
Q 017194          182 --------------------------------------NKIVNFGL-------------------PENNGNAGQCYNPAF  204 (375)
Q Consensus       182 --------------------------------------~~~~~~~~-------------------~~~~~~~~~~~~~~~  204 (375)
                                                            +..+.+..                   +..........|...
T Consensus       926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~ 1005 (1249)
T 3sfz_A          926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005 (1249)
T ss_dssp             EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC
T ss_pred             eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc
Confidence                                                  00000000                   000000111236678


Q ss_pred             eeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee--eeeeecCCcceeEe
Q 017194          205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSGGKRLHL  282 (375)
Q Consensus       205 v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~--~~~~~~~~~~~~~~  282 (375)
                      |.+++|+|      +++++++++.||.|++||+.++......  .....+..+.++|++..+..  .+....++....+.
T Consensus      1006 v~~l~~s~------dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A         1006 VRHIQFTA------DGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp             CCCEEECS------SSSCEEEECSSSBEEEEETTTTEEECCB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred             eEEEEECC------CCCEEEEEcCCCEEEEEECCCCceEEEe--cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence            88999988      8999999999999999999987665332  34466778889998876654  12222223333345


Q ss_pred             eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV  362 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  362 (375)
                      ...+.+|...|.+++|+   |++++|++++.||.|++||+.++         ..+..+.+|.+.|.+++|+| ++++|++
T Consensus      1078 ~~~~~~~~~~v~~~~~s---~d~~~l~s~s~d~~v~iwd~~~~---------~~~~~l~~h~~~v~~~~~s~-dg~~lat 1144 (1249)
T 3sfz_A         1078 ERDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWSFDLL---------SPLHELKGHNGCVRCSAFSL-DGILLAT 1144 (1249)
T ss_dssp             CEEEECCSSCCCCEEEC---SSSSSCEEECCSSCCCEECSSSS---------SCSBCCCCCSSCEEEEEECS-SSSEEEE
T ss_pred             eEEEcccCCcEEEEEEC---CCCCEEEEEcCCCcEEEEECCCc---------ceeeeeccCCCcEEEEEECC-CCCEEEE
Confidence            56788899999999999   99999999999999999999988         66677889999999999999 9999999


Q ss_pred             eeCCCeEEEEecC
Q 017194          363 CDTSKVVKVYSIS  375 (375)
Q Consensus       363 ~~~dg~v~iw~~~  375 (375)
                      ++.||.|++||++
T Consensus      1145 ~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A         1145 GDDNGEIRIWNVS 1157 (1249)
T ss_dssp             EETTSCCCEEESS
T ss_pred             EeCCCEEEEEECC
Confidence            9999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-42  Score=285.77  Aligned_cols=264  Identities=17%  Similarity=0.237  Sum_probs=212.5

Q ss_pred             eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEE
Q 017194           52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKI  129 (375)
Q Consensus        52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i  129 (375)
                      ..+.+|...|.+++|+|+|++|++++.|++|++||+.... .+.+..+.+|..+|.+++|+++  +++|++++.|++|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            4567899999999999999999999999999999997432 3456778899999999999874  889999999999999


Q ss_pred             EeCcCce--eeeeEecCcccceeEEEEeeC--CCcEEEEeecCCeEEEeeCCCCCcc--eEEecCCCCCCCCCCcccCCC
Q 017194          130 IDIRQHC--LYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPA  203 (375)
Q Consensus       130 wd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  203 (375)
                      ||+++++  .+..+. +|...|.+++|+|+  +. +|++++.|+.|++||++++...  ..+. .            |..
T Consensus        82 Wd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~------------h~~  146 (297)
T 2pm7_B           82 WKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIID-A------------HAI  146 (297)
T ss_dssp             EEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEE-C------------CSS
T ss_pred             EEcCCCceEEEEEee-cCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeee-c------------ccC
Confidence            9998774  456677 89999999999997  66 7999999999999999876422  2332 3            567


Q ss_pred             ceeEEeecCCccc-------cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          204 FVHAIAIPDADML-------DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       204 ~v~~~~~~~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                      .|.+++|+|....       .+++++|++|+.|+.|++||+++..                                   
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-----------------------------------  191 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------------------------------  191 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT-----------------------------------
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-----------------------------------
Confidence            8999999983100       0125799999999999999998642                                   


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCC---CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  353 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  353 (375)
                       ....+...+.+|...|.+++|+   |+   +.+|++++.|++|++||++.......    ..+.....|...|.+++|+
T Consensus       192 -~~~~~~~~l~~H~~~V~~v~~s---p~~~~~~~las~s~D~~v~iWd~~~~~~~~~----~~~~~~~~~~~~v~~~~~s  263 (297)
T 2pm7_B          192 -QTYVLESTLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRASWS  263 (297)
T ss_dssp             -TEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE----EEESSSSCCSSCEEEEEEC
T ss_pred             -ceEEEEEEecCCCCceEEEEEC---CCCCCceEEEEEECCCcEEEEEeCCCCCccc----eeeeecccCCCcEEEEEEC
Confidence             1223455788999999999999   77   48999999999999999987421000    0111124678899999999


Q ss_pred             CCCCCcEEEeeCCCeEEEEecC
Q 017194          354 PTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       354 ~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      | ++++|++++.||.|++|+.+
T Consensus       264 ~-~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          264 L-SGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             S-SSCCEEEEETTSCEEEEEEC
T ss_pred             C-CCCEEEEEcCCCcEEEEEEC
Confidence            9 99999999999999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.5e-43  Score=294.13  Aligned_cols=284  Identities=12%  Similarity=0.104  Sum_probs=244.1

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW   93 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~   93 (375)
                      |.++|.+++|+|+ +++++++..++.+.+|.............|...|.+++|+|++++|++++ |+.|++||+.+++..
T Consensus         8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            5678999999999 89999888887777776655555555557999999999999999999998 999999999887655


Q ss_pred             ccccccc--CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce--eeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           94 RPLESYN--YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        94 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      ..+..+.  .|...|.+++|+|++++|++++.|+.|++||+++++  ....+. .|...+.+++|+|+++ ++++++.|+
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg  163 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSK-VCFSCCSDG  163 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCC-EEEEEeCCC
Confidence            5555444  678999999999999999999999999999999876  566777 8999999999999998 799999999


Q ss_pred             eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc
Q 017194          170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST  249 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  249 (375)
                      .|++||+++++.+..+..             |...+.+++|+|      +++++++++.||.|++||+++++.       
T Consensus       164 ~v~~~d~~~~~~~~~~~~-------------~~~~i~~~~~~~------~~~~l~~~~~dg~i~~~d~~~~~~-------  217 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQG-------------HTDGASCIDISN------DGTKLWTGGLDNTVRSWDLREGRQ-------  217 (337)
T ss_dssp             CEEEEETTTTEEEEEECC-------------CSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTTEE-------
T ss_pred             cEEEEeCCCCceeeeeec-------------ccCceEEEEECC------CCCEEEEEecCCcEEEEECCCCce-------
Confidence            999999999888777763             467899999999      799999999999999999997421       


Q ss_pred             CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee
Q 017194          250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  329 (375)
Q Consensus       250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  329 (375)
                                                       ...+ .+...+.+++|+   |++++|++++.|+.|++||+.+.+   
T Consensus       218 ---------------------------------~~~~-~~~~~v~~~~~s---~~~~~l~~~~~~~~i~~~~~~~~~---  257 (337)
T 1gxr_A          218 ---------------------------------LQQH-DFTSQIFSLGYC---PTGEWLAVGMESSNVEVLHVNKPD---  257 (337)
T ss_dssp             ---------------------------------EEEE-ECSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTSSC---
T ss_pred             ---------------------------------Eeee-cCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCCC---
Confidence                                             1122 356789999999   999999999999999999999863   


Q ss_pred             ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          330 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                            . .....|...|.+++|+| ++++|++++.||.|++|+++
T Consensus       258 ------~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          258 ------K-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             ------E-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ------e-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence                  2 24567899999999999 99999999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-43  Score=292.60  Aligned_cols=255  Identities=16%  Similarity=0.205  Sum_probs=203.0

Q ss_pred             Ceee-ec-CCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-------CceeeEeeecCccEEEEEEeCCCCeEEEEcC
Q 017194            8 PRRL-RG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS   78 (375)
Q Consensus         8 ~~~l-~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~   78 (375)
                      +..+ .+ |.+.|++++|+|+ +++|++|+.|++|+|||+..       .+.+..+.+|...|.+++|+|++++|++++.
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             EEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            3445 34 9999999999999 89999999999999999853       3456778899999999999999999999999


Q ss_pred             CCeEEEEECCC-CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc--eeeeeEecCcccceeEEEEe
Q 017194           79 GKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH--CLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        79 d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~  155 (375)
                      |++|++||+.. +...+.+..+.+|...|.+++|+|++++|++++.|++|++||..++  +.+..+. +|...|.+++|+
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~  206 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFD  206 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEEC
T ss_pred             CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEec
Confidence            99999999953 3334556677889999999999999999999999999999998766  6778888 999999999999


Q ss_pred             eC--CCcEEEEeecCCeEEEeeCCCCCc--------ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194          156 PW--KPWEVISGGLDSKLVMWDFSKGRP--------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  225 (375)
Q Consensus       156 ~~--~~~~l~~~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  225 (375)
                      |+  +. .|++++.|++|++||++.+..        ...+...            |...|.+++|++       +.+|++
T Consensus       207 ~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~v~~s~-------~~~l~s  266 (330)
T 2hes_X          207 KTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV------------HKRQVYNVAWGF-------NGLIAS  266 (330)
T ss_dssp             CSSSSC-EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSC------------CSSCEEEEEECT-------TSCEEE
T ss_pred             CCCCee-EEEEEeCCCeEEEEEecCCCccccceeEEeeecccc------------cccceEEEEEcC-------CCEEEE
Confidence            98  44 799999999999999875421        1111111            567899999997       458999


Q ss_pred             EecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc-cEEEEEEeecCC-
Q 017194          226 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGE-  303 (375)
Q Consensus       226 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~-  303 (375)
                      ++.||.|++||..++..                                     ........+|.. .|.+++|+   | 
T Consensus       267 ~~~dg~v~iw~~~~~~~-------------------------------------~~~~~~~~~h~~~~v~~v~~~---~~  306 (330)
T 2hes_X          267 VGADGVLAVYEEVDGEW-------------------------------------KVFAKRALCHGVYEINVVKWL---EL  306 (330)
T ss_dssp             EETTSCEEEEEEETTEE-------------------------------------EEEEEESCTTTTSCEEEEEEC-----
T ss_pred             EeCCCEEEEEEcCCCce-------------------------------------EEEeccccccccceEEEEEEe---cC
Confidence            99999999999875310                                     011123457776 89999999   6 


Q ss_pred             -CCcEEEEecCCCeEEEEeCCC
Q 017194          304 -RGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       304 -~~~~l~s~~~dg~i~iwd~~~  324 (375)
                       ++++|++|+.||.|++||++.
T Consensus       307 ~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          307 NGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ---CCEEEEETTSEEEEEEC--
T ss_pred             CCceEEEEecCCCcEEEEEecc
Confidence             688999999999999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.3e-41  Score=296.53  Aligned_cols=320  Identities=15%  Similarity=0.178  Sum_probs=258.7

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      +..+.+.+|.+.|.. ++.++ +++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  ++.+++++.|+.|++|
T Consensus       109 ~~~~~l~~h~~~v~~-~~~~~-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          109 KSPKVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW  184 (445)
T ss_dssp             CCCEEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             ceeEEecccCCCcEE-EEEEc-CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence            456789999998643 34555 7899999999999999999999999999999999999998  5689999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      |+.+++   .+..+.+|...|.++.|+  ++.+++++.||.|++||+++++.+..+. +|...|.+++|  ++. .++++
T Consensus       185 d~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~~~  255 (445)
T 2ovr_B          185 NAETGE---CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGR-RVVSG  255 (445)
T ss_dssp             ETTTTE---EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSS-CEEEE
T ss_pred             ECCcCc---EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCC-EEEEE
Confidence            998764   445566789999999995  5689999999999999999999999999 99999999999  555 79999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.||.|++||+++++.+..+..             |...+.++++        ++..+++++.||.|++||+++++....
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~--------~~~~l~~~~~d~~i~i~d~~~~~~~~~  314 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQG-------------HTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGNCIHT  314 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECC-------------CSSCEEEEEE--------CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cCCCEEEEEECCCCcEeEEecC-------------CCCceEEEEE--------CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            9999999999999988887763             4678999998        488999999999999999998876655


Q ss_pred             ccccCCCCCCceeecccccceeeee------eeecCCcceeEeeeeec---CCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEME------ILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      .... ...  ...+.+++..+++.+      .++....   +.+..+.   .|...|.+++|+     +++|++|+.||.
T Consensus       315 ~~~~-~~~--v~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~  383 (445)
T 2ovr_B          315 LTGH-QSL--TSGMELKDNILVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN-----KNFVITSSDDGT  383 (445)
T ss_dssp             ECCC-CSC--EEEEEEETTEEEEEETTSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC-----SSEEEEEETTSE
T ss_pred             EcCC-ccc--EEEEEEeCCEEEEEeCCCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC-----CCEEEEEeCCCe
Confidence            4432 222  234455677766522      3333333   3344454   488999999986     479999999999


Q ss_pred             EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCe----EEEEecC
Q 017194          317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV----VKVYSIS  375 (375)
Q Consensus       317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~----v~iw~~~  375 (375)
                      |++||+.+++......    .....+|.+.|.+++|+| ++.+|++++.||.    |.+||++
T Consensus       384 v~iwd~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          384 VKLWDLKTGEFIRNLV----TLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEEETTTCCEEEEEE----ECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEECCCCceeeeee----ccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECC
Confidence            9999999984331100    001146889999999999 9999999999997    9999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.6e-42  Score=289.60  Aligned_cols=252  Identities=15%  Similarity=0.181  Sum_probs=221.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC------ceeeEeeecCccEEEEEEeCCCCeEEEEc
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNEDIIYVS   77 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~   77 (375)
                      +++....+..|...|.+++|+|+ +.+|++|+.|+.+++|++...      .....+..|...|.+++|+|++..|++++
T Consensus        95 ~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s  173 (354)
T 2pbi_B           95 TTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS  173 (354)
T ss_dssp             TCCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe
Confidence            34556678889999999999999 899999999999999998643      33567788999999999999999999999


Q ss_pred             CCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                      .|++|++||+++++   .+..+.+|...|.+++|+|  ++++|++|+.||.|++||+++++.+..+. +|...|++++|+
T Consensus       174 ~D~~v~lwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~  249 (354)
T 2pbi_B          174 GDGTCALWDVESGQ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYY  249 (354)
T ss_dssp             TTSEEEEEETTTCC---EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEC
T ss_pred             CCCcEEEEeCCCCe---EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEe
Confidence            99999999998764   4556677899999999988  46899999999999999999999999999 999999999999


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  235 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  235 (375)
                      |++. .|++++.|++|++||++.++.+..+....           +...+.+++|+|      ++++|++|+.|+.|++|
T Consensus       250 p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~-----------~~~~~~~~~~s~------~g~~l~~g~~d~~i~vw  311 (354)
T 2pbi_B          250 PSGD-AFASGSDDATCRLYDLRADREVAIYSKES-----------IIFGASSVDFSL------SGRLLFAGYNDYTINVW  311 (354)
T ss_dssp             TTSS-EEEEEETTSCEEEEETTTTEEEEEECCTT-----------CCSCEEEEEECT------TSSEEEEEETTSCEEEE
T ss_pred             CCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCC-----------cccceeEEEEeC------CCCEEEEEECCCcEEEE
Confidence            9998 79999999999999999887666554220           234688999999      89999999999999999


Q ss_pred             eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194          236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK  315 (375)
Q Consensus       236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg  315 (375)
                      |+.++                                        ..+..+.+|...|.+++|+   |+|++|++|+.||
T Consensus       312 d~~~~----------------------------------------~~~~~l~~h~~~v~~l~~s---pdg~~l~sgs~D~  348 (354)
T 2pbi_B          312 DVLKG----------------------------------------SRVSILFGHENRVSTLRVS---PDGTAFCSGSWDH  348 (354)
T ss_dssp             ETTTC----------------------------------------SEEEEECCCSSCEEEEEEC---TTSSCEEEEETTS
T ss_pred             ECCCC----------------------------------------ceEEEEECCCCcEEEEEEC---CCCCEEEEEcCCC
Confidence            99864                                        2334677999999999999   9999999999999


Q ss_pred             eEEEEe
Q 017194          316 LVKVWD  321 (375)
Q Consensus       316 ~i~iwd  321 (375)
                      .|++|+
T Consensus       349 ~v~vW~  354 (354)
T 2pbi_B          349 TLRVWA  354 (354)
T ss_dssp             EEEEEC
T ss_pred             CEEecC
Confidence            999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.4e-42  Score=287.95  Aligned_cols=261  Identities=18%  Similarity=0.263  Sum_probs=214.7

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ....+.+|...|++++|+|+ +.+|++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             ccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence            45678999999999999998 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCC----------CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKS----------SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  156 (375)
                      +... ..........|...|.+++|+|++          .+|++++.|+.|++||. +.+....+. +|...|.+++|+|
T Consensus       147 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~  223 (343)
T 2xzm_R          147 ILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISP  223 (343)
T ss_dssp             SSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECT
T ss_pred             ccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECC
Confidence            9732 223333344678899999999986          78999999999999994 566777888 8999999999999


Q ss_pred             CCCcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194          157 WKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  235 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  235 (375)
                      +++ +|++++.|+.|++||++. ......+..              ...|.+++|+|      ++.+++++ .|+.|++|
T Consensus       224 ~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~--------------~~~v~~v~~sp------~~~~la~~-~d~~v~iw  281 (343)
T 2xzm_R          224 NGK-YIATGGKDKKLLIWDILNLTYPQREFDA--------------GSTINQIAFNP------KLQWVAVG-TDQGVKIF  281 (343)
T ss_dssp             TSS-EEEEEETTCEEEEEESSCCSSCSEEEEC--------------SSCEEEEEECS------SSCEEEEE-ESSCEEEE
T ss_pred             CCC-EEEEEcCCCeEEEEECCCCcccceeecC--------------CCcEEEEEECC------CCCEEEEE-CCCCEEEE
Confidence            998 799999999999999954 444444442              35799999999      67777654 57789999


Q ss_pred             eCCCcceee--cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          236 NIESELNIS--RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       236 d~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      |+.+.....  .....                             .........+|...|.+++|+   |+|++|++|+.
T Consensus       282 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~s---p~g~~l~sg~~  329 (343)
T 2xzm_R          282 NLMTQSKAPVCTIEAE-----------------------------PITKAEGQKGKNPQCTSLAWN---ALGKKLFAGFT  329 (343)
T ss_dssp             ESSSCCSCSEEECCCC-----------------------------SGGGBTTBCCSCCCEEEEEEC---SSSCCEEEEET
T ss_pred             EeCCCCCCceEEeecC-----------------------------cchhhhhhcCCCCceEEEEEC---CCCCeEEEecC
Confidence            998753221  00000                             000011234788899999999   99999999999


Q ss_pred             CCeEEEEeCCCc
Q 017194          314 DKLVKVWDCSRF  325 (375)
Q Consensus       314 dg~i~iwd~~~~  325 (375)
                      ||.|++|+++++
T Consensus       330 Dg~v~~w~~~~g  341 (343)
T 2xzm_R          330 DGVIRTFSFETS  341 (343)
T ss_dssp             TSEEEEEEEEEE
T ss_pred             CceEEEEEEEcc
Confidence            999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-42  Score=291.76  Aligned_cols=251  Identities=16%  Similarity=0.159  Sum_probs=204.9

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceee----EeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL----VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      .....+|...|++++|+|+ +. +++++.||+|+|||+.+++...    ...+|...|.+++|+|++++|++++.|+.|+
T Consensus        87 ~~~~~~~~~~V~~~~~s~d-~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~  164 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSE-KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK  164 (357)
T ss_dssp             CSEEEECSSCEEEEEEETT-TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             ecccCCCCCCEEEEEEcCC-CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            3445679999999999998 54 5567789999999998877533    3347899999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  161 (375)
                      +||+++++   .+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++....+.. .|...+.+++|+|++..+
T Consensus       165 iwd~~~~~---~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  241 (357)
T 4g56_B          165 VWDLSQKA---VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT  241 (357)
T ss_dssp             EEETTTTE---EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE
T ss_pred             EEECCCCc---EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce
Confidence            99998754   4555677899999999999875 789999999999999998877665431 466789999999987668


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      |++|+.|+.|++||+++++.+..+..             +...|++++|+|.     .+++|++|+.|+.|++||++++ 
T Consensus       242 la~g~~d~~i~~wd~~~~~~~~~~~~-------------~~~~v~~l~~sp~-----~~~~lasgs~D~~i~iwd~~~~-  302 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNPDSAQTSAV-------------HSQNITGLAYSYH-----SSPFLASISEDCTVAVLDADFS-  302 (357)
T ss_dssp             EEEEESSSCEEEEESSCGGGCEEECC-------------CSSCEEEEEECSS-----SSCCEEEEETTSCEEEECTTSC-
T ss_pred             EEEeecccceeEEECCCCcEeEEEec-------------cceeEEEEEEcCC-----CCCEEEEEeCCCEEEEEECCCC-
Confidence            99999999999999999998888763             4678999999993     3468999999999999999874 


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC-CCcEEEEecCCCeEEEE
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVW  320 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~l~s~~~dg~i~iw  320 (375)
                                                             +++ ...+|...|++++|+   | ++++|++++.||+|++|
T Consensus       303 ---------------------------------------~~~-~~~~H~~~V~~vafs---P~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          303 ---------------------------------------EVF-RDLSHRDFVTGVAWS---PLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             ---------------------------------------EEE-EECCCSSCEEEEEEC---SSSTTEEEEEETTSCEEEE
T ss_pred             ---------------------------------------cEe-EECCCCCCEEEEEEe---CCCCCEEEEEcCCCeEEEE
Confidence                                                   222 334799999999999   6 78999999999999999


Q ss_pred             eCCCc
Q 017194          321 DCSRF  325 (375)
Q Consensus       321 d~~~~  325 (375)
                      ++.+.
T Consensus       340 ~~~~~  344 (357)
T 4g56_B          340 HLPSE  344 (357)
T ss_dssp             ECC--
T ss_pred             ECCCC
Confidence            99775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.3e-43  Score=290.94  Aligned_cols=254  Identities=16%  Similarity=0.223  Sum_probs=204.6

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeC--CCCeEEEEcCCCeEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKS   84 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~i~i   84 (375)
                      ..+.+|.++|++++|+|+ +++||+|+.|++|+|||+.+++  .+..+.+|..+|.+++|+|  ++++|++++.|++|++
T Consensus         7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            356799999999999999 8999999999999999998775  4677889999999999986  4889999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCcee---eeeEecCcccceeEEEEeeCC-
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWK-  158 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~-  158 (375)
                      ||+++++ ......+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+..   ...+. +|...|.+++|+|+. 
T Consensus        86 Wd~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           86 WREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             ECCSSSC-CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT-SSSSCBCCCEECCCCC
T ss_pred             EECCCCc-ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec-cccCCcceEEEccccC
Confidence            9998653 2344556788999999999997  78999999999999999986532   34455 899999999999973 


Q ss_pred             ----------------CcEEEEeecCCeEEEeeCCCCC---cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC
Q 017194          159 ----------------PWEVISGGLDSKLVMWDFSKGR---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT  219 (375)
Q Consensus       159 ----------------~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  219 (375)
                                      . +|++++.|+.|++||++...   +...+. +            |...|.+++|+|      +
T Consensus       164 ~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~------------h~~~V~~v~~sp------~  223 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLE-A------------HSDWVRDVAWAP------S  223 (316)
T ss_dssp             C------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCB-C------------CSSCEEEEECCC------C
T ss_pred             CccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecc-c------------CCCceEEEEecC------C
Confidence                            4 79999999999999997553   222232 2            578899999999      4


Q ss_pred             C----CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEE
Q 017194          220 N----KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC  295 (375)
Q Consensus       220 ~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  295 (375)
                      +    .+|++++.||.|++||+.+.....                                    .....+..|...|.+
T Consensus       224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~------------------------------------~~~~~~~~~~~~v~~  267 (316)
T 3bg1_A          224 IGLPTSTIASCSQDGRVFIWTCDDASSNT------------------------------------WSPKLLHKFNDVVWH  267 (316)
T ss_dssp             SSCSCCEEEEEETTCEEEEEECSSTTCCC------------------------------------CBCCEEEECSSCEEE
T ss_pred             CCCCCceEEEEcCCCeEEEEEccCccccc------------------------------------hhhhhhhcCCCcEEE
Confidence            4    889999999999999987521000                                    001133467889999


Q ss_pred             EEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          296 VAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       296 ~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      ++|+   |++++|++++.|+.|++|+...
T Consensus       268 v~~s---p~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          268 VSWS---ITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEC---TTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEc---CCCCEEEEEcCCCeEEEEEECC
Confidence            9999   9999999999999999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-41  Score=297.79  Aligned_cols=282  Identities=19%  Similarity=0.315  Sum_probs=240.6

Q ss_pred             CCeeeecCCCce-eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            7 KPRRLRGHKATA-TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         7 ~~~~l~~h~~~i-~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ....+++|.+.| .++.+  + +++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++ .+++++.|++|++|
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--E-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--E-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--C-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            346889999886 55555  4 5799999999999999999999999999999999999999988 89999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEc--CCCCeEEEEeCCCcEEEEeCcCcee-----------------------eee
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADDGGDVKIIDIRQHCL-----------------------YKS  140 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~  140 (375)
                      |+++++   .+..+.+|...|.+++|+  ++++++++++.|+.|++||+++++.                       +..
T Consensus       189 d~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          189 DIKKGC---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             ETTTTE---EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             ECCCCc---EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            999764   445566789999999998  5778999999999999999987653                       345


Q ss_pred             EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      +. +|...+.++  +++++ ++++++.|+.|++||+++++++..+..             |...+.+++|+|      ++
T Consensus       266 ~~-~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~~~------~~  322 (464)
T 3v7d_B          266 LR-GHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSG-------------HTDRIYSTIYDH------ER  322 (464)
T ss_dssp             EC-CCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECC-------------CSSCEEEEEEET------TT
T ss_pred             cc-CccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEecC-------------CCCCEEEEEEcC------CC
Confidence            56 788888877  56676 799999999999999999988887763             468899999999      79


Q ss_pred             CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee
Q 017194          221 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  300 (375)
Q Consensus       221 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  300 (375)
                      +++++|+.||.|++||++++                                        +++..+.+|...|.+++|+ 
T Consensus       323 ~~l~sg~~dg~i~vwd~~~~----------------------------------------~~~~~~~~h~~~v~~~~~~-  361 (464)
T 3v7d_B          323 KRCISASMDTTIRIWDLENG----------------------------------------ELMYTLQGHTALVGLLRLS-  361 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTT----------------------------------------EEEEEECCCSSCEEEEEEC-
T ss_pred             CEEEEEeCCCcEEEEECCCC----------------------------------------cEEEEEeCCCCcEEEEEEc-
Confidence            99999999999999999874                                        4556788999999999986 


Q ss_pred             cCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          301 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       301 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                          +++|++++.||.|++||+.+....          ....+...+..++|++ ++++|++++ ||.|++||++
T Consensus       362 ----~~~l~s~s~dg~v~vwd~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          362 ----DKFLVSAAADGSIRGWDANDYSRK----------FSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEE----------EEEECTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETT
T ss_pred             ----CCEEEEEeCCCcEEEEECCCCcee----------eeecCCCCccEEEEEe-CCCEEEEec-CCeEEEEECC
Confidence                479999999999999999987421          2224666778888998 889999988 8999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-42  Score=294.14  Aligned_cols=307  Identities=13%  Similarity=0.113  Sum_probs=236.9

Q ss_pred             CCCCCeeeecCCCceeEEEEecCC--CCEEEEeCCCCcEEEEeccc-Ccee-eEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDR--PGFVASSGEDGCICWFDLRS-KDVQ-LVTDVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~--~~~l~s~~~d~~i~iw~~~~-~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      ..+.+..+++|.+.|++++|+|++  +++|++|+.||.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            345567788999999999999985  58999999999999999997 5544 7788999999999999999999999999


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEE--cCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVC--NPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      +.|++||+++++...    ...|...|.+++|  +|++++|++++.||.|++||+++++.+..+. .+ ..+.++.+.++
T Consensus       108 g~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~~  181 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIYP  181 (368)
T ss_dssp             SEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEETT
T ss_pred             CcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecCC
Confidence            999999999765332    3457899999999  8999999999999999999999999998888 55 46666666644


Q ss_pred             CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          158 KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       158 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                         .+++++.++.+++||++...........           ........+++.+....  ....+++++.||.|++||+
T Consensus       182 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          182 ---MAVVATAERGLIVYQLENQPSEFRRIES-----------PLKHQHRCVAIFKDKQN--KPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             ---EEEEEEGGGCEEEEECSSSCEEEEECCC-----------SCSSCEEEEEEEECTTS--CEEEEEEEETTSEEEEEES
T ss_pred             ---eeEEEeCCCcEEEEEeccccchhhhccc-----------cccCCCceEEEcccCCC--CCCeEEEecCCCcEEEEec
Confidence               6888999999999999876543332211           02345566666552000  1123999999999999999


Q ss_pred             CCcce---eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194          238 ESELN---ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND  314 (375)
Q Consensus       238 ~~~~~---~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d  314 (375)
                      +....   .......                            ...........|...|.+++|+   |++++|++++.|
T Consensus       246 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~s~~~d  294 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCH----------------------------RSNGTNTSAPQDIYAVNGIAFH---PVHGTLATVGSD  294 (368)
T ss_dssp             SCSCHHHHSEEEECS----------------------------EEC----CCCEEECCEEEEEEC---TTTCCEEEEETT
T ss_pred             CCCCccccceeeeee----------------------------ecccccccccccccceEEEEEe---cCCCEEEEEccC
Confidence            87421   0000000                            0000011222334489999999   999999999999


Q ss_pred             CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          315 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       315 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |.|++||+.++         +.+..+.+|...|.+++|+| ++++|++++.|+..+.|+
T Consensus       295 g~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          295 GRFSFWDKDAR---------TKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             SCEEEEETTTT---------EEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGG
T ss_pred             CeEEEEECCCC---------cEEEEecCCCCCceEEEECC-CCCeEEEEeccccccccc
Confidence            99999999998         55667778999999999999 999999999887554443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.3e-42  Score=289.37  Aligned_cols=283  Identities=13%  Similarity=0.135  Sum_probs=235.5

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKS   84 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~i   84 (375)
                      ....+|.+.|++++|+|+ +++|++++.|+.|++|++.+++   ....+..|...|.+++|+|+++ +|++++.|+.|++
T Consensus         5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            345689999999999998 8999999999999999999887   3455668999999999999999 9999999999999


Q ss_pred             EEC-CCCCcccccccccC--CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC---------ceeeeeEecCcccceeEE
Q 017194           85 FDV-HMPASWRPLESYNY--NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---------HCLYKSLRAGHSSICSSV  152 (375)
Q Consensus        85 wd~-~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~  152 (375)
                      ||+ .+++.    ..+..  |...|.+++|+| +++|++++.|+.|++||+++         ++.+..+.  |...|.++
T Consensus        84 wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~  156 (342)
T 1yfq_A           84 VDLIGSPSF----QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTM  156 (342)
T ss_dssp             ECSSSSSSE----EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEE
T ss_pred             EEeccCCce----EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEE
Confidence            999 76532    45556  889999999999 99999999999999999987         77777765  88899999


Q ss_pred             EEeeCCCcEEEEeecCCeEEEeeCCC-CCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          153 QFIPWKPWEVISGGLDSKLVMWDFSK-GRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      +|+|++   +++++.|+.|++||+++ +.. .......            +...+.+++|+|.     +++++++++.||
T Consensus       157 ~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~~~~i~~i~~~~~-----~~~~l~~~~~dg  216 (342)
T 1yfq_A          157 DTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESG------------LKYQIRDVALLPK-----EQEGYACSSIDG  216 (342)
T ss_dssp             EECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECS------------CSSCEEEEEECSG-----GGCEEEEEETTS
T ss_pred             EecCCc---EEEEeCCCeEEEEECCccccccceeeecC------------CCCceeEEEECCC-----CCCEEEEEecCC
Confidence            999875   89999999999999998 554 2333323            4678999999872     389999999999


Q ss_pred             cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC---------CCccEEEEEEeec
Q 017194          231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG---------HTAAASCVAFSMF  301 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~  301 (375)
                      .|++|++.......                                  .......+..         |...|.+++|+  
T Consensus       217 ~i~i~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--  260 (342)
T 1yfq_A          217 RVAVEFFDDQGDDY----------------------------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFS--  260 (342)
T ss_dssp             EEEEEECCTTCCST----------------------------------TCTTCEEEECCCCCTTCCSSCCCEEEEEEC--
T ss_pred             cEEEEEEcCCCccc----------------------------------ccccceeeecccccccccccceeEEEEEEc--
Confidence            99999998640000                                  0011112333         45599999999  


Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc-ccceeeeeecCCCCCcEEEeeCCCe
Q 017194          302 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       302 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                       |++++|++++.||.|++||+.++         +.+..+.+| ...|.+++  | ++++|++++.||.
T Consensus       261 -~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          261 -PRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDSVVKIA--C-SDNILCLATSDDT  315 (342)
T ss_dssp             -TTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSSEEEEEE--E-CSSEEEEEEECTH
T ss_pred             -CCCCEEEEecCCceEEEEcCccH---------hHhhhhhcccCCCceEec--C-CCCeEEEEecCCc
Confidence             99999999999999999999998         555667787 99999999  6 9999999999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.9e-41  Score=290.43  Aligned_cols=275  Identities=17%  Similarity=0.242  Sum_probs=230.0

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee--ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      ++.|+|+++  ++||+|. |++|+|||..+++....+.  .|...|++|+|+|+|++|++|+.|+.|++||+++++   .
T Consensus       108 ~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---~  181 (420)
T 4gga_A          108 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---R  181 (420)
T ss_dssp             CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---E
T ss_pred             ceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---E
Confidence            677999975  5787775 8999999999999877665  567889999999999999999999999999999764   4


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      +..+.+|...+.++.++  +..|++|+.|+.+++||.... ..+..+. +|...+..+.++|++. .+++++.|+.+++|
T Consensus       182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~  257 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGR-HLASGGNDNLVNVW  257 (420)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCC-eeeeeeccccceEE
Confidence            55667788899888774  679999999999999998864 4567778 9999999999999998 79999999999999


Q ss_pred             eCCCCCcc----eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE--ecCCcEEEEeCCCcceeecccc
Q 017194          175 DFSKGRPN----KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA--KGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       175 d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      |..+++..    .... .            +...|.+++|+|.     +..+++++  +.|+.|++||+.++.       
T Consensus       258 ~~~~~~~~~~~~~~~~-~------------~~~~V~~~~~~p~-----~~~~la~~~gs~D~~I~iwd~~t~~-------  312 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFT-Q------------HQGAVKAVAWCPW-----QSNVLATGGGTSDRHIRIWNVCSGA-------  312 (420)
T ss_dssp             ESSCCSSCSCCSEEEC-C------------CSSCEEEEEECTT-----CTTEEEEEECTTTCEEEEEETTTTE-------
T ss_pred             eeccccccceeeeeec-c------------cCCceeeeeeCCC-----cccEEEEEeecCCCEEEEEeCCccc-------
Confidence            99877532    2222 2            5678999999995     56666654  479999999999752       


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec--CCCeEEEEeCCCce
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQ  326 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~--~dg~i~iwd~~~~~  326 (375)
                                                       +...+.. ...+.++.|+   ++++.+++++  .|+.|+|||+.++ 
T Consensus       313 ---------------------------------~~~~~~~-~~~v~~~~~~---~~~~~lv~~sg~~d~~I~iwd~~~~-  354 (420)
T 4gga_A          313 ---------------------------------CLSAVDA-HSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM-  354 (420)
T ss_dssp             ---------------------------------EEEEEEC-SSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC-
T ss_pred             ---------------------------------cceeecc-ccceeeeeec---CCCCeEEEEEecCCCEEEEEECCCC-
Confidence                                             2334433 3568889999   8888887654  7999999999998 


Q ss_pred             eeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          327 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                              +.+..+.+|.+.|++++|+| +|++|+||+.|++|+|||+
T Consensus       355 --------~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          355 --------AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRC  393 (420)
T ss_dssp             --------CEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred             --------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence                    66677889999999999999 9999999999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-41  Score=291.00  Aligned_cols=255  Identities=18%  Similarity=0.277  Sum_probs=208.4

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      .|++++|+|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+
T Consensus       125 ~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          125 YIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             BEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            4999999999 899999999999999999999999999999999999999999999999999999999999976543333


Q ss_pred             ccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeE-------ecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           97 ESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSL-------RAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      .    +...+.+++|+| ++++|++|+.|+.|++||+++++.+..+       . +|...|.+++|+|+++ +|++++.|
T Consensus       204 ~----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~g~-~l~s~s~d  277 (393)
T 1erj_A          204 S----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT-GHKDSVYSVVFTRDGQ-SVVSGSLD  277 (393)
T ss_dssp             E----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------C-CCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             E----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCC-CCCCCEEEEEECCCCC-EEEEEeCC
Confidence            2    356899999999 8999999999999999999998877766       4 7899999999999998 79999999


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      +.|++||+++............ .........|...|.+++++|      ++.+|++|+.|+.|++||+.++        
T Consensus       278 ~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~------~~~~l~sgs~D~~v~iwd~~~~--------  342 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKTPNS-GTCEVTYIGHKDFVLSVATTQ------NDEYILSGSKDRGVLFWDKKSG--------  342 (393)
T ss_dssp             SEEEEEEC----------------CEEEEEECCSSCEEEEEECG------GGCEEEEEETTSEEEEEETTTC--------
T ss_pred             CEEEEEECCCCCCcccccCCCC-CcceEEEecccCcEEEEEECC------CCCEEEEEeCCCeEEEEECCCC--------
Confidence            9999999986543211100000 000000011567899999999      7999999999999999999874        


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee---cCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM---FGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                                      +.+..+.+|...|.+++|++   ++|++++|++|+.||.|++|++...
T Consensus       343 --------------------------------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          343 --------------------------------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             --------------------------------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             --------------------------------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence                                            33457789999999999984   2347899999999999999998654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-42  Score=300.82  Aligned_cols=304  Identities=10%  Similarity=0.146  Sum_probs=230.3

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-----------eeeEeeecC------------ccEEEEEEeCCC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----------VQLVTDVGN------------GPVTSLCFKSGN   70 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~l~~~~~~   70 (375)
                      |.+.|++++|+|+ +++||+|+.||.|+||++.+++           ....+.+|.            ..|.+++|+|++
T Consensus        27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            5789999999998 8999999999999999999877           477888898            889999999998


Q ss_pred             --CeEEEEcCCCeEEEEECCCCCccc------------------------------------cccc-ccCCCcceeEEEE
Q 017194           71 --EDIIYVSSGKEVKSFDVHMPASWR------------------------------------PLES-YNYNKEEINQIVC  111 (375)
Q Consensus        71 --~~l~~~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~~~~~v~~~~~  111 (375)
                        ..|++++.|+.|++||+.++....                                    .... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              789999999999999987532210                                    0011 3568999999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEeCcC-ceeeee-------EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--
Q 017194          112 NPKSSFLACADDGGDVKIIDIRQ-HCLYKS-------LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--  181 (375)
Q Consensus       112 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--  181 (375)
                      +|++++|++| .|+.|++||+++ ++.+..       +. +|...|.+++|+|++..+|++++.||.|++||+++++.  
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANME-ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGG-GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccc-ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9999999998 799999999984 444442       44 78999999999999833899999999999999999886  


Q ss_pred             --ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC-cceeecccccCCCCCCcee
Q 017194          182 --NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQS  258 (375)
Q Consensus       182 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~  258 (375)
                        ...+..... .........+...|.+++|+|      ++++|++++. +.|++||+++ +.                 
T Consensus       264 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~------~g~~l~~~~~-~~v~iwd~~~~~~-----------------  318 (447)
T 3dw8_B          264 RHSKLFEEPED-PSNRSFFSEIISSISDVKFSH------SGRYMMTRDY-LSVKVWDLNMENR-----------------  318 (447)
T ss_dssp             TTCEEECCC------CCHHHHHTTCEEEEEECT------TSSEEEEEES-SEEEEEETTCCSS-----------------
T ss_pred             ceeeEeccCCC-ccccccccccCceEEEEEECC------CCCEEEEeeC-CeEEEEeCCCCcc-----------------
Confidence              566653200 000000000113899999999      8999999999 9999999986 32                 


Q ss_pred             ecccccceeeeeeeecCCcceeEeeeeecCCCc---------------cEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA---------------AASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                             ++..+.+|..               .+..++|+   |++++|++|+.||.|++||+.
T Consensus       319 -----------------------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s---~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          319 -----------------------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWN---GSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             -----------------------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC---TTSSEEEEECSTTEEEEEETT
T ss_pred             -----------------------ccceeeccccccccccccccccccccceEEEEC---CCCCEEEEeccCCEEEEEEcC
Confidence                                   1223333322               13458999   999999999999999999999


Q ss_pred             Cceeeeecchh-----------------------hhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          324 RFQGVQTSINN-----------------------DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       324 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +++........                       ........+...|..++|+| ++++||+++.++ +++|.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          373 TKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             TCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEE
T ss_pred             CCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECC-CCCEEEEEecce-eeeec
Confidence            88654211000                       00111234567899999999 999999998876 77775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.5e-42  Score=288.19  Aligned_cols=263  Identities=15%  Similarity=0.113  Sum_probs=205.2

Q ss_pred             EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEE
Q 017194           53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKII  130 (375)
Q Consensus        53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw  130 (375)
                      .+.+|...|++++|+|++++|++++.|++|++||+.++.. ..+..+.+|...|.+++|++  ++++|++++.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            4568999999999999999999999999999999986532 34566778999999999986  48899999999999999


Q ss_pred             eCcCc--eeeeeEecCcccceeEEEEeeC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          131 DIRQH--CLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       131 d~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      |++++  +....+. +|...|++++|+|+  +. +|++++.|+.|++||++.+........          ...|...+.
T Consensus        87 d~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~----------~~~h~~~v~  154 (316)
T 3bg1_A           87 REENGTWEKSHEHA-GHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKI----------NNAHTIGCN  154 (316)
T ss_dssp             CCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCB----------TTSSSSCBC
T ss_pred             ECCCCcceEEEEcc-CCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeee----------eccccCCcc
Confidence            99876  3566777 89999999999998  55 799999999999999987643211110          011456788


Q ss_pred             EEeecCCccc-----------cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194          207 AIAIPDADML-----------DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  275 (375)
Q Consensus       207 ~~~~~~~~~~-----------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~  275 (375)
                      +++|+|....           ...+++|++|+.|+.|++||++..                                   
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-----------------------------------  199 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-----------------------------------  199 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-----------------------------------
T ss_pred             eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-----------------------------------
Confidence            8999883100           011478999999999999999742                                   


Q ss_pred             CcceeEeeeeecCCCccEEEEEEeecCCCC----cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeee
Q 017194          276 GGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  351 (375)
Q Consensus       276 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  351 (375)
                        ........+.+|...|.+++|+   |++    ++|++++.|++|++|++.+.....     .....+..|...|.+++
T Consensus       200 --~~~~~~~~l~~h~~~V~~v~~s---p~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~  269 (316)
T 3bg1_A          200 --GQWKEEQKLEAHSDWVRDVAWA---PSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----WSPKLLHKFNDVVWHVS  269 (316)
T ss_dssp             --SCEEEEECCBCCSSCEEEEECC---CCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----CBCCEEEECSSCEEEEE
T ss_pred             --CccceeeecccCCCceEEEEec---CCCCCCCceEEEEcCCCeEEEEEccCccccc-----hhhhhhhcCCCcEEEEE
Confidence              1123455788999999999999   775    899999999999999998631000     11223456889999999


Q ss_pred             ecCCCCCcEEEeeCCCeEEEEec
Q 017194          352 TTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       352 ~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |+| ++++|++++.|+.|++|+.
T Consensus       270 ~sp-~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          270 WSI-TANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             ECT-TTCCEEEEESSSCEEEEEE
T ss_pred             EcC-CCCEEEEEcCCCeEEEEEE
Confidence            999 9999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.9e-42  Score=292.56  Aligned_cols=268  Identities=19%  Similarity=0.236  Sum_probs=223.2

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------eeeEeeecCccEEEEEEeCCC-CeEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSGN-EDIIY   75 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~l~~~~~~-~~l~~   75 (375)
                      +++....+++|...|.+++|+|+ +++|++|+.|+.+++|++.+..       ....+.+|...|.++.|.|++ ..|++
T Consensus        97 ~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s  175 (380)
T 3iz6_a           97 TSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT  175 (380)
T ss_dssp             TTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE
T ss_pred             CCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE
Confidence            45567788999999999999999 8999999999999999987532       345678899999999999974 56999


Q ss_pred             EcCCCeEEEEECCCCCcccccc--cccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCc-CceeeeeEecCcccceeE
Q 017194           76 VSSGKEVKSFDVHMPASWRPLE--SYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSS  151 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~  151 (375)
                      ++.|++|++||+.+++....+.  ...+|...|.+++|++ ++++|++|+.|+.|++||++ .++.+..+. +|...|++
T Consensus       176 ~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~  254 (380)
T 3iz6_a          176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINS  254 (380)
T ss_dssp             ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCE
T ss_pred             ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEE
Confidence            9999999999999876554332  2256889999999987 78999999999999999998 457788888 99999999


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV  231 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~  231 (375)
                      ++|+|++. +|++++.|++|++||+++++.+..+......      ...+...+.+++|+|      ++++|++|+.||.
T Consensus       255 v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~------~g~~l~~g~~dg~  321 (380)
T 3iz6_a          255 VKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDR------NDNELPIVTSVAFSI------SGRLLFAGYSNGD  321 (380)
T ss_dssp             EEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSS------SCCSSCSCSEEEECS------SSSEEEEECTTSC
T ss_pred             EEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccc------cccccCceEEEEECC------CCCEEEEEECCCC
Confidence            99999998 7999999999999999999888777533100      001224589999999      8999999999999


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG  311 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~  311 (375)
                      |++||+.+++...                                    .......+|...|.+++|+   |+|++|++|
T Consensus       322 i~vwd~~~~~~~~------------------------------------~~~~~~~~h~~~v~~l~~s---~dg~~l~sg  362 (380)
T 3iz6_a          322 CYVWDTLLAEMVL------------------------------------NLGTLQNSHEGRISCLGLS---SDGSALCTG  362 (380)
T ss_dssp             EEEEETTTCCEEE------------------------------------EECCSCSSCCCCCCEEEEC---SSSSEEEEE
T ss_pred             EEEEECCCCceEE------------------------------------EEecccCCCCCceEEEEEC---CCCCEEEEe
Confidence            9999998643221                                    1111236899999999999   999999999


Q ss_pred             cCCCeEEEEeCCCc
Q 017194          312 GNDKLVKVWDCSRF  325 (375)
Q Consensus       312 ~~dg~i~iwd~~~~  325 (375)
                      +.|+.|++|++...
T Consensus       363 s~D~~i~iW~~~~~  376 (380)
T 3iz6_a          363 SWDKNLKIWAFSGH  376 (380)
T ss_dssp             CTTSCEEEEECCSS
T ss_pred             eCCCCEEEEecCCC
Confidence            99999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.2e-41  Score=293.05  Aligned_cols=281  Identities=18%  Similarity=0.250  Sum_probs=236.2

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      .+|...|.|+.+  + +++|++|+.||.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++||+.+++
T Consensus       130 ~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          130 SETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            456778998887  4 789999999999999999999999999999999999999  68899999999999999999765


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee---eeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      .   +..+.+|...|.+++|++  ..+++|+.||.|++||+++++..   ..+. +|...|.+++|  +++ .+++++.|
T Consensus       205 ~---~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~s~~~d  275 (435)
T 1p22_A          205 M---LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DDK-YIVSASGD  275 (435)
T ss_dssp             E---EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ETT-EEEEEETT
T ss_pred             E---EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CCC-EEEEEeCC
Confidence            4   455567889999999974  59999999999999999987655   5666 89999999999  455 79999999


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      |.|++||+++++.+..+..             |...+.+++++        ++++++|+.||.|++||++++        
T Consensus       276 g~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~~--------~~~l~~g~~dg~i~iwd~~~~--------  326 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNG-------------HKRGIACLQYR--------DRLVVSGSSDNTIRLWDIECG--------  326 (435)
T ss_dssp             SEEEEEETTTCCEEEEEEC-------------CSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTC--------
T ss_pred             CeEEEEECCcCcEEEEEcC-------------CCCcEEEEEeC--------CCEEEEEeCCCeEEEEECCCC--------
Confidence            9999999999998888873             46788999883        789999999999999999974        


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  328 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  328 (375)
                                                      +++..+.+|...|.+++|     ++++|++|+.||.|++||+.++...
T Consensus       327 --------------------------------~~~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~~~~~~~  369 (435)
T 1p22_A          327 --------------------------------ACLRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVWDLVAALDP  369 (435)
T ss_dssp             --------------------------------CEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred             --------------------------------CEEEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEEECCCCCCc
Confidence                                            344577889999999987     4679999999999999999775311


Q ss_pred             eecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          329 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ........+..+.+|.+.|.+++|   ++++|++++.||.|++||+.
T Consensus       370 ~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          370 RAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             TSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC--
T ss_pred             cccccchheeeccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEECC
Confidence            000000145567789999999999   66799999999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-40  Score=276.81  Aligned_cols=256  Identities=21%  Similarity=0.274  Sum_probs=220.0

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +++....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~  132 (312)
T 4ery_A           54 DGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR  132 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             CcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            34566788899999999999998 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +||+++++.   +..+..|..+|.+++|+|++++|++++.||.|++||+++++.+..+...+...+..++|+|+++ +|+
T Consensus       133 iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  208 (312)
T 4ery_A          133 IWDVKTGKC---LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YIL  208 (312)
T ss_dssp             EEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEE
T ss_pred             EEECCCCEE---EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEE
Confidence            999987643   4455667899999999999999999999999999999998887777535677899999999998 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||+++++.+..+....           .........+++.     ++.+|++|+.||.|++||+.++   
T Consensus       209 ~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~l~sg~~dg~i~vwd~~~~---  269 (312)
T 4ery_A          209 AATLDNTLKLWDYSKGKCLKTYTGHK-----------NEKYCIFANFSVT-----GGKWIVSGSEDNLVYIWNLQTK---  269 (312)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECSSC-----------CSSSCCCEEEECS-----SSCEEEECCTTSCEEEEETTTC---
T ss_pred             EEcCCCeEEEEECCCCcEEEEEEecC-----------CceEEEEEEEEeC-----CCcEEEEECCCCEEEEEECCCc---
Confidence            99999999999999998877775331           0111122233321     6899999999999999999874   


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec--CCCeEEEEe
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWD  321 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~--~dg~i~iwd  321 (375)
                                                           +.+..+.+|...|.+++|+   |++++|++++  .|+.|++|+
T Consensus       270 -------------------------------------~~~~~~~~h~~~v~~~~~~---p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          270 -------------------------------------EIVQKLQGHTDVVISTACH---PTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             -------------------------------------CEEEEECCCSSCEEEEEEC---SSSSEEEEEECTTTCCEEEEE
T ss_pred             -------------------------------------hhhhhhhccCCcEEEEeec---CcCCceEEEEccCCccEEEec
Confidence                                                 3455788999999999999   9999999886  699999998


Q ss_pred             CC
Q 017194          322 CS  323 (375)
Q Consensus       322 ~~  323 (375)
                      .+
T Consensus       310 ~d  311 (312)
T 4ery_A          310 SD  311 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.9e-41  Score=292.98  Aligned_cols=286  Identities=14%  Similarity=0.166  Sum_probs=240.6

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEe--CCCCeEEEEcCCCe
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK--SGNEDIIYVSSGKE   81 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~~~~~d~~   81 (375)
                      +++.+..+.+|.+.|++++|+|+ + +|++|+.||+|++||+++++.+..+.+|...|.+++|+  ++++++++++.|+.
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             CCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            45667888999999999999998 4 99999999999999999999999999999999999998  57789999999999


Q ss_pred             EEEEECCCCCcccc--------------------cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE
Q 017194           82 VKSFDVHMPASWRP--------------------LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL  141 (375)
Q Consensus        82 i~iwd~~~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  141 (375)
                      |++||+.++.....                    +..+.+|...+.++  +++++++++++.|+.|++||+++++.+..+
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  306 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  306 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            99999987543221                    34456677778776  577889999999999999999999999999


Q ss_pred             ecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC
Q 017194          142 RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK  221 (375)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  221 (375)
                      . +|...|.+++|+|+++ .+++++.||.|++||+++++++..+..             |...|.+++++        ++
T Consensus       307 ~-~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~-------------h~~~v~~~~~~--------~~  363 (464)
T 3v7d_B          307 S-GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQG-------------HTALVGLLRLS--------DK  363 (464)
T ss_dssp             C-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECC-------------CSSCEEEEEEC--------SS
T ss_pred             c-CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeC-------------CCCcEEEEEEc--------CC
Confidence            9 9999999999999998 799999999999999999998888763             46789999994        67


Q ss_pred             EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec
Q 017194          222 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF  301 (375)
Q Consensus       222 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  301 (375)
                      ++++++.||.|++||+.+....                                        ... .|...+..++|+  
T Consensus       364 ~l~s~s~dg~v~vwd~~~~~~~----------------------------------------~~~-~~~~~~~~~~~~--  400 (464)
T 3v7d_B          364 FLVSAAADGSIRGWDANDYSRK----------------------------------------FSY-HHTNLSAITTFY--  400 (464)
T ss_dssp             EEEEEETTSEEEEEETTTCCEE----------------------------------------EEE-ECTTCCCEEEEE--
T ss_pred             EEEEEeCCCcEEEEECCCCcee----------------------------------------eee-cCCCCccEEEEE--
Confidence            9999999999999999974211                                        111 245567778899  


Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh-hhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194          302 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY  372 (375)
Q Consensus       302 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  372 (375)
                       +++++|++|+ ||.|++||+.+++         ++. ....|...|.+++|+.  ..++++++.||.+.+|
T Consensus       401 -~~~~~l~~~~-dg~i~iwd~~~g~---------~~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          401 -VSDNILVSGS-ENQFNIYNLRSGK---------LVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             -ECSSEEEEEE-TTEEEEEETTTCC---------EEESCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEE
T ss_pred             -eCCCEEEEec-CCeEEEEECCCCc---------EEehhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEE
Confidence             8999999998 8999999999984         443 3567899999999963  3456666677766554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=277.35  Aligned_cols=280  Identities=16%  Similarity=0.205  Sum_probs=226.0

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee--ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      .++|+||++ + +||+| .|++|+|||+++++.++.+.  .|...|.+++|+|++++|++|+.|++|++||+++++.   
T Consensus        28 ~~~l~WS~~-~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~---  101 (318)
T 4ggc_A           28 LNLVDWSSG-N-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---  101 (318)
T ss_dssp             CBCEEECTT-S-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---
T ss_pred             ceEEEECCC-C-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee---
Confidence            578999987 3 77776 48999999999999887765  5778899999999999999999999999999997644   


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      +..+.+|...+.++.+  ++..+++++.++.+++|+.... ..+..+. +|...+..+.+.++++ ++++++.|+.|++|
T Consensus       102 ~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGR-HLASGGNDNLVNVW  177 (318)
T ss_dssp             EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcCCCC-EEEEEecCcceeEE
Confidence            4455667777776554  5679999999999999998865 4556677 8999999999999998 79999999999999


Q ss_pred             eCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE--EEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          175 DFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC--VVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      |+++++........         ...+...+.+++++|.     +...+  ++++.++.|++||.......         
T Consensus       178 d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~i~lwd~~~~~~~---------  234 (318)
T 4ggc_A          178 PSAPGEGGWVPLQT---------FTQHQGAVKAVAWCPW-----QSNVLATGGGTSDRHIRIWNVCSGACL---------  234 (318)
T ss_dssp             ESSCBTTBSCCSEE---------ECCCCSCEEEEEECTT-----STTEEEEEECTTTCEEEEEETTTCCEE---------
T ss_pred             ECCCCcccccceee---------ecccCCceEEEEecCC-----CCcEEEEEecCCCCEEEEEeccccccc---------
Confidence            99987643221100         0014578899999984     34443  45667899999999864211         


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe--cCCCeEEEEeCCCceeeee
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQGVQT  330 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~  330 (375)
                                                      ....+...+..+.|+   +++..++++  +.|+.|++||+.++     
T Consensus       235 --------------------------------~~~~~~~~v~~~~~~---~~~~~~~~~sg~~d~~i~iwd~~~~-----  274 (318)
T 4ggc_A          235 --------------------------------SAVDAHSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM-----  274 (318)
T ss_dssp             --------------------------------EEEECSSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC-----
T ss_pred             --------------------------------ccccceeeeeeeeec---ccccceEEEEEcCCCEEEEEECCCC-----
Confidence                                            223456778999999   788777654  47999999999998     


Q ss_pred             cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          331 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                          +.+..+.+|.+.|++++|+| ++++|+||+.||+|+|||+.
T Consensus       275 ----~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          275 ----AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             ----CEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred             ----cEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence                66677889999999999999 99999999999999999973

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.8e-41  Score=312.45  Aligned_cols=342  Identities=12%  Similarity=0.107  Sum_probs=263.4

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +++.+..+.+|.++|++++|+|+ +++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus        44 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  122 (814)
T 3mkq_A           44 TQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (814)
T ss_dssp             TTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence            45677889999999999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee--CCCc
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP--WKPW  160 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~  160 (375)
                      +||+.++.  .....+.+|...|.+++|+| +++.|++++.||.|++||+.+++....+...+...+.+++|+|  +++ 
T Consensus       123 vw~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-  199 (814)
T 3mkq_A          123 LWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-  199 (814)
T ss_dssp             EEEGGGTS--EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-
T ss_pred             EEECCCCc--eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-
Confidence            99998642  34455667889999999999 8889999999999999999988887777734448999999999  887 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      ++++++.||.|++||+++++.+..+..             |...+.+++|+|      +++++++++.||.|++||+.++
T Consensus       200 ~l~~~~~dg~i~~~d~~~~~~~~~~~~-------------~~~~v~~~~~~~------~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          200 YMITASDDLTIKIWDYQTKSCVATLEG-------------HMSNVSFAVFHP------TLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEEC-------------CSSCEEEEEECS------SSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEcC-------------CCCCEEEEEEcC------CCCEEEEEeCCCeEEEEECCCC
Confidence            799999999999999999988887763             467899999999      7999999999999999999987


Q ss_pred             ceeecccccCCCCCCceeecccccce-eeee------eeecCCc----------ce------------------------
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRD-AEME------ILDQSGG----------KR------------------------  279 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~~------~~~~~~~----------~~------------------------  279 (375)
                      ......... ...+.+++++|+|..+ ...+      .+.....          ..                        
T Consensus       261 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (814)
T 3mkq_A          261 KVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV  339 (814)
T ss_dssp             SEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred             cEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence            665544433 3567778888888753 2211      1111000          00                        


Q ss_pred             ------eEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee---------e-----------cch
Q 017194          280 ------LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------T-----------SIN  333 (375)
Q Consensus       280 ------~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~-----------~~~  333 (375)
                            ......+..+...+.+++|+   |+|+++++++ |+.+.+|++.......         .           ...
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~  415 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAHS---PNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQ  415 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEEC---TTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCC
T ss_pred             ccCccceeeeecCCCCccCCceeEEC---CCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCc
Confidence                  00011223455678999999   9999999998 8999999987643210         0           000


Q ss_pred             hhhhhhhcccccceeeeeecCCCC---CcEEEeeCCCeEEEEec
Q 017194          334 NDLLIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~v~iw~~  374 (375)
                      -.+...+.+|...+..++|+| ++   .+|++++.|+.|++||+
T Consensus       416 v~l~~~~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~  458 (814)
T 3mkq_A          416 IKYYKNFKEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDW  458 (814)
T ss_dssp             EEEEETTEECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECT
T ss_pred             EEEEECCCCccceEEcCCcCc-cceecceEEEEecCCEEEEEEC
Confidence            011123334555566666666 55   45666666666666665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-40  Score=284.02  Aligned_cols=263  Identities=14%  Similarity=0.184  Sum_probs=218.6

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc--cCceeeEeeecCccEEEEEEeCC--CCeEEEEcCCC
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGK   80 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~d~   80 (375)
                      ++.+..+++|.++|++++|+|+ +++||+|+.||.|+|||+.  +++.+..+.+|...|.+++|+++  +++|++++.|+
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CCccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            3567889999999999999999 8999999999999999998  66677888899999999999977  89999999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCce--eeeeEecCcccceeEEEEee
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~  156 (375)
                      .|++||+.+++ ...+..+..|...|.+++|+|+  +++|++++.|+.|++||++++.  ....+. .|...|.+++|+|
T Consensus        80 ~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~  157 (379)
T 3jrp_A           80 KVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAP  157 (379)
T ss_dssp             CEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECC
T ss_pred             EEEEEEcCCCc-eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcC
Confidence            99999998754 2355566678899999999999  9999999999999999998773  344566 8999999999999


Q ss_pred             -------------CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC---C
Q 017194          157 -------------WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---N  220 (375)
Q Consensus       157 -------------~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~  220 (375)
                                   ++. ++++++.|+.|++||+++++........         ...|...|.+++|+|      +   +
T Consensus       158 ~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~h~~~v~~~~~sp------~~~~~  221 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLEST---------LEGHSDWVRDVAWSP------TVLLR  221 (379)
T ss_dssp             CC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEE---------ECCCSSCEEEEEECC------CCSSS
T ss_pred             ccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEE---------EecccCcEeEEEECC------CCCCC
Confidence                         566 8999999999999999877654322211         001568899999999      7   8


Q ss_pred             CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee
Q 017194          221 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  300 (375)
Q Consensus       221 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  300 (375)
                      ++|++++.||.|++||++++...                                   ..........|...|.+++|+ 
T Consensus       222 ~~l~s~~~dg~i~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~v~~~~~s-  265 (379)
T 3jrp_A          222 SYLASVSQDRTCIIWTQDNEQGP-----------------------------------WKKTLLKEEKFPDVLWRASWS-  265 (379)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSC-----------------------------------CEEEESSSSCCSSCEEEEEEC-
T ss_pred             CeEEEEeCCCEEEEEeCCCCCcc-----------------------------------ceeeeeccccCCCcEEEEEEc-
Confidence            99999999999999999874211                                   012223445688899999999 


Q ss_pred             cCCCCcEEEEecCCCeEEEEeCCC
Q 017194          301 FGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       301 ~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                        |++++|++++.||.|++|++..
T Consensus       266 --~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          266 --LSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             --SSSCCEEEEESSSSEEEEEEEE
T ss_pred             --CCCCEEEEecCCCcEEEEeCCC
Confidence              9999999999999999999873

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-41  Score=297.63  Aligned_cols=289  Identities=12%  Similarity=0.047  Sum_probs=223.0

Q ss_pred             eeeecCCCceeEEEEecC-----CCCEEEEeCCCCcEEEEecccCce-----------eeEeeecCccEEEEEEeCCCCe
Q 017194            9 RRLRGHKATATCCIASRD-----RPGFVASSGEDGCICWFDLRSKDV-----------QLVTDVGNGPVTSLCFKSGNED   72 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~-----~~~~l~s~~~d~~i~iw~~~~~~~-----------~~~~~~~~~~v~~l~~~~~~~~   72 (375)
                      ..+.+|.+.|++++|+|+     ++.+||+++.||+|+|||+.+++.           ...+.+|...|.+++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            346788899999999996     257999999999999999987642           24677899999999999864 7


Q ss_pred             EEEEcCCCeEEEEECCCCCcccccccccCCCcceeEE--EEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCccc--
Q 017194           73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI--VCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSS--  147 (375)
Q Consensus        73 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--  147 (375)
                      |++|+.||+|++||++++.  .+...+.+|...|.++  .|+|++ ++|++++.|++|++||+++++.+..+. +|..  
T Consensus       280 lasgs~DgtV~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~  356 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGS  356 (524)
T ss_dssp             EEEEETTSEEEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCC
T ss_pred             EEEEeCCCEEEEEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccC
Confidence            9999999999999998653  2344567889999999  578887 899999999999999999988877777 6653  


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      .|.+++|+|+++ .+++++.|++|++||++++.++..+. +            |...|++++|+|      ++++|++|+
T Consensus       357 ~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~-g------------H~~~V~sva~Sp------~g~~l~Sgs  416 (524)
T 2j04_B          357 NLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLV-S------------RETTITAIGVSR------LHPMVLAGS  416 (524)
T ss_dssp             SCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEE-E------------CSSCEEEEECCS------SCCBCEEEE
T ss_pred             cccceEeCCCcC-eEEEeCCCCcEEEEECcccccceeee-c------------CCCceEEEEeCC------CCCeEEEEE
Confidence            588999999998 79999999999999999988877766 3            578999999999      799999999


Q ss_pred             cCCcEEEEeCCCcceeecccc----cCCCCCCceeecccccceeeeeeeecCCc-ceeEeeeeecCCCccEEEEEEeecC
Q 017194          228 GDGVVDVINIESELNISRSKS----TTKPLKGSQSTSKVNIRDAEMEILDQSGG-KRLHLDYSVGGHTAAASCVAFSMFG  302 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~  302 (375)
                      .||+|++||+...... ....    .....+..++++|+|..+........... ....++..+.+|...|.+++|+   
T Consensus       417 ~Dgtv~lwd~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs---  492 (524)
T 2j04_B          417 ADGSLIITNAARRLLH-GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN---  492 (524)
T ss_dssp             TTTEEECCBSCSSTTT-CC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC---
T ss_pred             CCCEEEEEechHhhcc-ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC---
Confidence            9999999998653111 1000    01112346789999985543222212111 1245667888999999999999   


Q ss_pred             CCC---cEEEEecCCCeEEEEeCCCc
Q 017194          303 ERG---KYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       303 ~~~---~~l~s~~~dg~i~iwd~~~~  325 (375)
                      |++   .++|+|+.||.|+||++...
T Consensus       493 p~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          493 ETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCCCccHHHHhhccCceEEEEEcccc
Confidence            774   59999999999999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.8e-40  Score=280.10  Aligned_cols=296  Identities=17%  Similarity=0.177  Sum_probs=223.9

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc----eeeEeeecCccEEEEEEeC--CCCeEEEEcCCCe
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKE   81 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~   81 (375)
                      ...+++|.+.|++++|+|+ +++||+|+.||.|++||+.++.    ....+.+|...|.+++|+|  ++++|++++.|+.
T Consensus         4 ~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            4567899999999999998 8999999999999999998763    5667788999999999999  6899999999999


Q ss_pred             EEEEECCCCCcc------cccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceeeeeEe-----------
Q 017194           82 VKSFDVHMPASW------RPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLR-----------  142 (375)
Q Consensus        82 i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------  142 (375)
                      |++||++++...      ..+..+..|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.           
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            999999875321      445667788999999999999  9999999999999999998876544332           


Q ss_pred             -cCcccceeEEEEeeC---CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccC
Q 017194          143 -AGHSSICSSVQFIPW---KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK  218 (375)
Q Consensus       143 -~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  218 (375)
                       ..|...+.+++|+|+   +. .+++++.++.+.+|+...++........           .|...|.+++|+|      
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~h~~~i~~~~~~p------  224 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLP-----------GHKSLIRSISWAP------  224 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECC-----------CCCSCEEEEEECC------
T ss_pred             cCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecC-----------CCCcceeEEEECC------
Confidence             147788999999997   66 8999999999988888776653333221           1568899999999      


Q ss_pred             CC----CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee-------eeeeecCCcceeEeeeeec
Q 017194          219 TN----KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE-------MEILDQSGGKRLHLDYSVG  287 (375)
Q Consensus       219 ~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~-------~~~~~~~~~~~~~~~~~~~  287 (375)
                      ++    ++|++++.||.|++||++........... .........++.....+.       ............+.+..+.
T Consensus       225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          225 SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES-LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             CSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEEC
T ss_pred             CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc-ccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence            66    89999999999999999875443322111 111111122222222211       1112223344567778899


Q ss_pred             CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      +|...|++++|+   |++++|++++.||.|++|++.+++
T Consensus       304 ~h~~~v~~~~~s---~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          304 DHNGEVWSVSWN---LTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             TTSSCEEEEEEC---SSSCCEEEEETTSCEEEEEECTTS
T ss_pred             cccccEEEEEEc---CCCCEEEEecCCCcEEEEecCcCc
Confidence            999999999999   999999999999999999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.4e-40  Score=282.25  Aligned_cols=255  Identities=16%  Similarity=0.227  Sum_probs=223.1

Q ss_pred             CCCCeeeec-CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            5 EAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         5 ~~~~~~l~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      ++....+.. |.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+  ++.+++++.|+.|+
T Consensus       123 ~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~  199 (401)
T 4aez_A          123 GSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIH  199 (401)
T ss_dssp             CCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             CcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEE
Confidence            444445554 8899999999998 8999999999999999999999999999999999999995  57999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +||++...  ..+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .|...|.+++|+|++..+++
T Consensus       200 i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~  276 (401)
T 4aez_A          200 HHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLA  276 (401)
T ss_dssp             EEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEE
T ss_pred             EEecccCc--ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEE
Confidence            99998532  3455666789999999999999999999999999999999999998898 89999999999998876777


Q ss_pred             Eee--cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE--ecCCcEEEEeCCC
Q 017194          164 SGG--LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA--KGDGVVDVINIES  239 (375)
Q Consensus       164 ~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  239 (375)
                      +++  .|+.|++||+++++.+..+..              ...+.+++|+|      +++.++++  +.||.|++||+.+
T Consensus       277 ~~~gs~d~~i~i~d~~~~~~~~~~~~--------------~~~v~~~~~s~------~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          277 TGGGTMDKQIHFWNAATGARVNTVDA--------------GSQVTSLIWSP------HSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EECCTTTCEEEEEETTTCCEEEEEEC--------------SSCEEEEEECS------SSSEEEEEECTTTCEEEEEEEET
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeC--------------CCcEEEEEECC------CCCeEEEEeecCCCcEEEEecCC
Confidence            765  799999999999998888873              47899999999      79999995  4899999999986


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      +.                                      ......+.+|...|.+++|+   |++++|++++.||.|++
T Consensus       337 ~~--------------------------------------~~~~~~~~~h~~~v~~~~~s---~dg~~l~s~~~dg~i~i  375 (401)
T 4aez_A          337 SG--------------------------------------LTKQVDIPAHDTRVLYSALS---PDGRILSTAASDENLKF  375 (401)
T ss_dssp             TE--------------------------------------EEEEEEEECCSSCCCEEEEC---TTSSEEEEECTTSEEEE
T ss_pred             cc--------------------------------------ceeEEEecCCCCCEEEEEEC---CCCCEEEEEeCCCcEEE
Confidence            31                                      23344577899999999999   99999999999999999


Q ss_pred             EeCCCce
Q 017194          320 WDCSRFQ  326 (375)
Q Consensus       320 wd~~~~~  326 (375)
                      |++.+++
T Consensus       376 w~~~~~~  382 (401)
T 4aez_A          376 WRVYDGD  382 (401)
T ss_dssp             EECCC--
T ss_pred             EECCCCc
Confidence            9999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.9e-40  Score=303.28  Aligned_cols=270  Identities=20%  Similarity=0.277  Sum_probs=218.0

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ..+.+.+|...|.+++|+|+ +++|++|+.||+|+|||+.+++....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            34678999999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCC--CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      ..............+|...|.+++|+|++  ..+++++.|+.|++||+++++....+. +|...|++++|+|+++ +|++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~-~l~s  578 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGS-LCAS  578 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEE
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCC-EEEE
Confidence            87543333334446788899999999986  579999999999999999999999999 9999999999999998 7999


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ++.|+.|++||+++++.+..+.              +...+.+++|+|      ++.++++++ ++.|++||+++.....
T Consensus       579 g~~Dg~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~sp------~~~~l~~~~-~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGKKLYSLE--------------ANSVIHALCFSP------NRYWLCAAT-EHGIKIWDLESKSIVE  637 (694)
T ss_dssp             EETTSBCEEEETTTTEEEECCB--------------CSSCEEEEEECS------SSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EeCCCeEEEEECCCCceEEEec--------------CCCcEEEEEEcC------CCcEEEEEc-CCCEEEEECCCCCChh
Confidence            9999999999999988776655              246799999999      677776665 5679999999875544


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      ............    .                 ..........+...+.+++|+   |+|++|++|+.||.|++|++..
T Consensus       638 ~~~~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~~l~~s---pdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          638 DLKVDLKAEAEK----A-----------------DNSGPAATKRKVIYCTSLNWS---ADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EECCCCC-------------------------------------CCCCEEEEEEC---TTSSEEEEEETTSEEEEEEC--
T ss_pred             hhcccccccccc----c-----------------cccccccCCceeEEeeeEEEc---CCCCEEEEEcCCCeEEEEeccC
Confidence            332211000000    0                 000000112233458899999   9999999999999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-40  Score=281.19  Aligned_cols=269  Identities=17%  Similarity=0.217  Sum_probs=219.8

Q ss_pred             CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCC
Q 017194           48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGG  125 (375)
Q Consensus        48 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg  125 (375)
                      |+++..+.+|...|.+++|+|++++|++++.|+.|++||+... ....+..+.+|...|.+++|+++  +++|++++.||
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            3456788999999999999999999999999999999999743 23556667788999999999987  89999999999


Q ss_pred             cEEEEeCcCce--eeeeEecCcccceeEEEEeeC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC
Q 017194          126 DVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN  201 (375)
Q Consensus       126 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (375)
                      .|++||+++++  .+..+. .|...|.+++|+|+  +. +|++++.|+.|++||++.+.........           .+
T Consensus        80 ~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----------~~  146 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIID-----------AH  146 (379)
T ss_dssp             CEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEE-----------CC
T ss_pred             EEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEec-----------CC
Confidence            99999999886  677777 89999999999999  77 8999999999999999987544433221           15


Q ss_pred             CCceeEEeecCCcc-------ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeec
Q 017194          202 PAFVHAIAIPDADM-------LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ  274 (375)
Q Consensus       202 ~~~v~~~~~~~~~~-------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~  274 (375)
                      ...|.+++|+|...       ..+++.++++++.||.|++||+++..                                 
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------  193 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---------------------------------  193 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT---------------------------------
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC---------------------------------
Confidence            67899999998200       01148999999999999999998642                                 


Q ss_pred             CCcceeEeeeeecCCCccEEEEEEeecCCC---CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeee
Q 017194          275 SGGKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC  351 (375)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  351 (375)
                         ........+.+|...|.+++|+   |+   +++|++++.||.|++||+..+.....    ..+.....|...|.+++
T Consensus       194 ---~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          194 ---QTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             ---TEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE----EEESSSSCCSSCEEEEE
T ss_pred             ---cceeeEEEEecccCcEeEEEEC---CCCCCCCeEEEEeCCCEEEEEeCCCCCccce----eeeeccccCCCcEEEEE
Confidence               2234556788999999999999   88   89999999999999999998631100    12233455889999999


Q ss_pred             ecCCCCCcEEEeeCCCeEEEEec
Q 017194          352 TTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       352 ~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |+| ++++|++++.||.|++|++
T Consensus       264 ~s~-~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          264 WSL-SGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             ECS-SSCCEEEEESSSSEEEEEE
T ss_pred             EcC-CCCEEEEecCCCcEEEEeC
Confidence            999 9999999999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1e-40  Score=287.00  Aligned_cols=286  Identities=10%  Similarity=0.082  Sum_probs=232.9

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccC----ceeeEeeecCccEEEEEEeC-CCCeEEEEcCCCeEEEEECCCCC
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      ....++++|+...++++++.||.|+||++.+.    .....+.+|...|.+++|+| ++++|++++.|+.|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34557888874344556889999999998654    23556788999999999999 89999999999999999998764


Q ss_pred             cc----cccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeE--ecCcccceeEEEEeeCCCcEEEE
Q 017194           92 SW----RPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        92 ~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      ..    ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  . .|...|.+++|+|++. +|++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~  193 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSRDGA-LICT  193 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT-TCCSCEEEEEECTTSS-CEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC-CCCCceEEEEECCCCC-EEEE
Confidence            32    4556677899999999999998 69999999999999999999999998  6 8999999999999998 7999


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCC-ceeEEeecCCccccCCCCEEEEE---ecCCcEEEEeCCCc
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA-FVHAIAIPDADMLDKTNKICVVA---KGDGVVDVINIESE  240 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~  240 (375)
                      ++.|+.|++||+++++.+..+...            +.. .+..+.|+|      ++++|++|   +.|+.|++||+++.
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~------~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRP------------HEGTRPVHAVFVS------EGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECS------------SCSSSCCEEEECS------TTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             EecCCcEEEEeCCCCceeeeeccC------------CCCCcceEEEEcC------CCcEEEEeccCCCCceEEEEcCccc
Confidence            999999999999999888877433            233 488999999      79999999   79999999999874


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE-EecCCCeEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKV  319 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~-s~~~dg~i~i  319 (375)
                      ....                                    . . ....|...+.+++|+   |++++|+ +|+.||.|++
T Consensus       256 ~~~~------------------------------------~-~-~~~~~~~~v~~~~~s---~~~~~l~~~g~~dg~i~i  294 (402)
T 2aq5_A          256 EEPL------------------------------------S-L-QELDTSSGVLLPFFD---PDTNIVYLCGKGDSSIRY  294 (402)
T ss_dssp             SSCS------------------------------------E-E-EECCCCSSCEEEEEE---TTTTEEEEEETTCSCEEE
T ss_pred             cCCc------------------------------------e-E-EeccCCCceeEEEEc---CCCCEEEEEEcCCCeEEE
Confidence            3210                                    0 1 122456779999999   9999886 5668999999


Q ss_pred             EeCCCceeeeecchhhhhhhhcc--cccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          320 WDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       320 wd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ||+.+++        ..+..+..  |...|.+++|+| ++.++++  .|+.+++|++
T Consensus       295 ~d~~~~~--------~~~~~l~~~~~~~~v~~~~~sp-~~~~~~s--~~~~~~~~~l  340 (402)
T 2aq5_A          295 FEITSEA--------PFLHYLSMFSSKESQRGMGYMP-KRGLEVN--KCEIARFYKL  340 (402)
T ss_dssp             EEECSST--------TCEEEEEEECCSSCCSEEEECC-GGGSCGG--GTEEEEEEEE
T ss_pred             EEecCCC--------cceEeecccccCCcccceEEec-cccccee--cceeEEEEEc
Confidence            9999873        11223333  568999999999 8877764  5679999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9e-40  Score=275.81  Aligned_cols=277  Identities=13%  Similarity=0.127  Sum_probs=221.1

Q ss_pred             eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc-ccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEE
Q 017194           52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVK  128 (375)
Q Consensus        52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  128 (375)
                      ..+.+|...|++++|+|++++|++++.|+.|++||+.++.. ......+.+|...|.+++|+|  ++++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            45678999999999999999999999999999999986432 245566678899999999999  699999999999999


Q ss_pred             EEeCcCc---------eeeeeEecCcccceeEEEEeeC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCC
Q 017194          129 IIDIRQH---------CLYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG  197 (375)
Q Consensus       129 iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  197 (375)
                      +||++++         +.+..+. .|...|.+++|+|+  +. ++++++.|+.|++||+++++.+..+....+.......
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            9999876         5577787 89999999999999  87 7999999999999999988776554421111011111


Q ss_pred             cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                      ...+...+.+++|+|..   .++.++++++.++.+.+|+....                                     
T Consensus       163 ~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~~~~~~-------------------------------------  202 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSR---FSPEKLAVSALEQAIIYQRGKDG-------------------------------------  202 (351)
T ss_dssp             CSSCSCCCEEEEECCCS---SSCCEEEEEETTEEEEEEECTTS-------------------------------------
T ss_pred             cCCcccceeEEEeccCC---CCCcEEEEecCCCcEEEEccCCC-------------------------------------
Confidence            11255789999999831   13899999999999988877643                                     


Q ss_pred             ceeEeeeeecCCCccEEEEEEeecCCCC----cEEEEecCCCeEEEEeCCCceeeee-----------------------
Q 017194          278 KRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCSRFQGVQT-----------------------  330 (375)
Q Consensus       278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------  330 (375)
                       .......+.+|...|.+++|+   |++    ++|++++.||.|++||+........                       
T Consensus       203 -~~~~~~~~~~h~~~i~~~~~~---p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
T 3f3f_A          203 -KLHVAAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG  278 (351)
T ss_dssp             -CEEEEEECCCCCSCEEEEEEC---CCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------
T ss_pred             -ceeeeeecCCCCcceeEEEEC---CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence             224456788899999999999   887    8999999999999999987421100                       


Q ss_pred             --------------cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          331 --------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       331 --------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                                    ....+.+..+.+|...|++++|+| ++++|++++.||.|++|+++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred             ccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecC
Confidence                          001134445677999999999999 99999999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.5e-39  Score=269.33  Aligned_cols=260  Identities=21%  Similarity=0.292  Sum_probs=220.1

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ..+.+++|.+.|.+++|+|+ +++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||
T Consensus        78 ~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            45678999999999999999 89999999999999999999988888888899999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCC--CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      +....  .......+|...+..++|++++  .++++++.|+.|++||+++++.+..+. +|...|++++|+|+++ +|++
T Consensus       157 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s  232 (340)
T 4aow_A          157 TLGVC--KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGS-LCAS  232 (340)
T ss_dssp             TTSCE--EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEE
T ss_pred             eCCCc--eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCC-EEEE
Confidence            87543  3334456778899999999864  568899999999999999999999999 9999999999999998 7999


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ++.|+.|++||+++.+.+..+..              ...+.++.++|      ++ .+++++.|+.|++||+++.....
T Consensus       233 ~s~Dg~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~~~------~~-~~~~~~~d~~i~iwd~~~~~~~~  291 (340)
T 4aow_A          233 GGKDGQAMLWDLNEGKHLYTLDG--------------GDIINALCFSP------NR-YWLCAATGPSIKIWDLEGKIIVD  291 (340)
T ss_dssp             EETTCEEEEEETTTTEEEEEEEC--------------SSCEEEEEECS------SS-SEEEEEETTEEEEEETTTTEEEE
T ss_pred             EeCCCeEEEEEeccCceeeeecC--------------CceEEeeecCC------CC-ceeeccCCCEEEEEECCCCeEEE
Confidence            99999999999999998888873              46899999998      44 56667789999999998754433


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      .....                               .......+|...|++++|+   |+|++|++|+.||.|+|||+++
T Consensus       292 ~~~~~-------------------------------~~~~~~~~h~~~v~~l~~s---~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          292 ELKQE-------------------------------VISTSSKAEPPQCTSLAWS---ADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EECCC--------------------------------------CCCCCEEEEEEC---TTSSEEEEEETTSCEEEEEEEC
T ss_pred             ecccc-------------------------------ceeeeccCCCCCEEEEEEC---CCCCEEEEEeCCCEEEEEeCCC
Confidence            22211                               1223456789999999999   9999999999999999999998


Q ss_pred             ce
Q 017194          325 FQ  326 (375)
Q Consensus       325 ~~  326 (375)
                      ++
T Consensus       338 Gt  339 (340)
T 4aow_A          338 GT  339 (340)
T ss_dssp             --
T ss_pred             cC
Confidence            73

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.6e-39  Score=276.41  Aligned_cols=253  Identities=14%  Similarity=0.215  Sum_probs=219.8

Q ss_pred             CCCCCeee--ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194            4 AEAKPRRL--RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE   81 (375)
Q Consensus         4 ~~~~~~~l--~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~   81 (375)
                      +++..+.+  .+|.+.|++|+|+|+ +++||+|+.||+|+|||+++++.+..+.+|...+.+++++  +..|++++.|+.
T Consensus       134 tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~  210 (420)
T 4gga_A          134 SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGH  210 (420)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred             CCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCc
Confidence            45555544  468889999999999 8999999999999999999999999999999999998875  578999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce----eeeeEecCcccceeEEEEeeC
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC----LYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      +++||.....  ..+..+.+|...+..+.++|+++++++++.|+.+++|+..+++    .+.... .|...|.+++|+|.
T Consensus       211 i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~  287 (420)
T 4gga_A          211 IHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPW  287 (420)
T ss_dssp             EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTT
T ss_pred             eeEeeecccc--eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCC
Confidence            9999988643  4456677889999999999999999999999999999998764    345566 78999999999999


Q ss_pred             CCcEEEEe--ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe--cCCcEE
Q 017194          158 KPWEVISG--GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVD  233 (375)
Q Consensus       158 ~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~dg~i~  233 (375)
                      +..+++++  +.|++|++||++++++...+..+              ..+.++.|+|      +++.+++++  .|+.|+
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--------------~~v~~~~~~~------~~~~lv~~sg~~d~~I~  347 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--------------SQVCSILWSP------HYKELISGHGFAQNQLV  347 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--------------SCEEEEEEET------TTTEEEEEECTTTCCEE
T ss_pred             cccEEEEEeecCCCEEEEEeCCccccceeeccc--------------cceeeeeecC------CCCeEEEEEecCCCEEE
Confidence            88677654  57999999999999998888743              6789999999      688887765  789999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||+.++                                        +++..+.+|...|.+++|+   |+|++|+||+.
T Consensus       348 iwd~~~~----------------------------------------~~v~~l~gH~~~V~~l~~s---pdg~~l~S~s~  384 (420)
T 4gga_A          348 IWKYPTM----------------------------------------AKVAELKGHTSRVLSLTMS---PDGATVASAAA  384 (420)
T ss_dssp             EEETTTC----------------------------------------CEEEEECCCSSCEEEEEEC---TTSSCEEEEET
T ss_pred             EEECCCC----------------------------------------cEEEEEcCCCCCEEEEEEc---CCCCEEEEEec
Confidence            9999874                                        4556788999999999999   99999999999


Q ss_pred             CCeEEEEeCCCc
Q 017194          314 DKLVKVWDCSRF  325 (375)
Q Consensus       314 dg~i~iwd~~~~  325 (375)
                      |++|+|||+...
T Consensus       385 D~tvriWdv~~~  396 (420)
T 4gga_A          385 DETLRLWRCFEL  396 (420)
T ss_dssp             TTEEEEECCSCS
T ss_pred             CCeEEEEECCCC
Confidence            999999999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-39  Score=277.41  Aligned_cols=250  Identities=14%  Similarity=0.168  Sum_probs=211.4

Q ss_pred             CCCceeEEEEecCC---CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC-CCCeEEEEcCCCeEEEEECCC
Q 017194           14 HKATATCCIASRDR---PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        14 h~~~i~~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      |...|++++|+|+.   +++|++|+.||.|++||+.+++.+..+..|...|.+++|+| ++++|++++.|+.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            55789999999983   35899999999999999999999999999999999999999 899999999999999999998


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe---------------------------
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR---------------------------  142 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------  142 (375)
                      ++....+..+..|...|.+++|+|++++|++++.||.|++||+++++....+.                           
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            76655555557789999999999999999999999999999999776544333                           


Q ss_pred             cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--------------ceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          143 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--------------NKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      ..|...|.+++|+  ++ ++++++.|+.|++||+++++.              +..+..             +...+.++
T Consensus       228 ~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~  291 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-------------SQCDIWYM  291 (366)
T ss_dssp             SSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-------------SSCCSSCC
T ss_pred             cCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc-------------cCCcEEEE
Confidence            0389999999999  45 799999999999999987754              333331             45678999


Q ss_pred             eecCCccccCC--CCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194          209 AIPDADMLDKT--NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  286 (375)
Q Consensus       209 ~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
                      +|+|      +  +++|++++.||.|++||+.+++..                                    ......+
T Consensus       292 ~~s~------~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------------------~~~~~~~  329 (366)
T 3k26_A          292 RFSM------DFWQKMLALGNQVGKLYVWDLEVEDPH------------------------------------KAKCTTL  329 (366)
T ss_dssp             CCEE------CTTSSEEEEECTTSCEEEEECCSSSGG------------------------------------GCEEEEE
T ss_pred             EEcC------CCCCcEEEEEecCCcEEEEECCCCCCc------------------------------------cccceEE
Confidence            9998      6  999999999999999999975321                                    1123355


Q ss_pred             cCC--CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          287 GGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       287 ~~~--~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      .+|  ...|.+++|+   |++++|++++.||.|++||+.+
T Consensus       330 ~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          330 THHKCGAAIRQTSFS---RDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CCTTCCSCEEEEEEC---TTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccCCceEEEEeC---CCCCeEEEEeCCCEEEEEEecC
Confidence            666  7899999999   9999999999999999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=280.52  Aligned_cols=312  Identities=13%  Similarity=0.113  Sum_probs=235.4

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEEEC----CCCCc------ccccc-ccc-----
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDV----HMPAS------WRPLE-SYN-----  100 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~----~~~~~------~~~~~-~~~-----  100 (375)
                      ..+.+|+++..........|..+|.+++|+|+++ +|++++.|+.|++|++    .+++.      ...+. .+.     
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS  104 (425)
T ss_dssp             ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred             cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence            4566788876665555556779999999999999 9999999999999999    76652      11111 111     


Q ss_pred             -CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC
Q 017194          101 -YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG  179 (375)
Q Consensus       101 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  179 (375)
                       +|...|.+++|+|++++|++++.||.|++|| .+++.+..+. .|...|.+++|+|+++ +|++++.|+.|++||++++
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISG  181 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTT
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCC
Confidence             2577999999999999999999999999999 6778888888 8999999999999998 7999999999999999999


Q ss_pred             CcceEEecCCCCCCCC--CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce
Q 017194          180 RPNKIVNFGLPENNGN--AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  257 (375)
Q Consensus       180 ~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      +.+..+..........  .........+.+++|+|       +..+++++.+|.|++||+.+........ .....+..+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~  253 (425)
T 1r5m_A          182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-------DDKFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVL  253 (425)
T ss_dssp             EEEEEECCC---------------CCCBSCCEEEE-------TTEEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEE
T ss_pred             cEEEEeeccccCccceeeccccCCcceeeEEEEcC-------CCEEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEE
Confidence            8888776441100000  00000011288899987       4668999999999999999876554443 344667889


Q ss_pred             eecccccceeeee---eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchh
Q 017194          258 STSKVNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN  334 (375)
Q Consensus       258 ~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  334 (375)
                      +++|+++++++.+   ....++....+....+.+|...|.+++|+   |++ ++++++.|+.|++||+.++         
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~d~~i~i~d~~~~---------  320 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV---GDD-KVISCSMDGSVRLWSLKQN---------  320 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEE---TTT-EEEEEETTSEEEEEETTTT---------
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEEC---CCC-EEEEEeCCCcEEEEECCCC---------
Confidence            9999999888633   22233333445566777899999999999   888 9999999999999999998         


Q ss_pred             hhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          335 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       335 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +.+..+..|...|.+++|+| ++++|++++.||.|++|++
T Consensus       321 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          321 TLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             EEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred             cEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence            55556678899999999999 9999999999999999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-39  Score=274.59  Aligned_cols=287  Identities=13%  Similarity=0.087  Sum_probs=221.4

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE--eeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .+..+.+|...|++++|+|+ +++|++++.||.|++||+++++....  +..|...|.+++|+|++++|++++.|+.|++
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  122 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  122 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             eeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence            67788999999999999998 89999999999999999988875444  3568999999999999999999999999999


Q ss_pred             EECCCCCccccccc-ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc------------------CceeeeeEecCc
Q 017194           85 FDVHMPASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR------------------QHCLYKSLRAGH  145 (375)
Q Consensus        85 wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~  145 (375)
                      ||++.+........ ...|...|.+++|+|++++|++++.||.|++||++                  .++.+..+. .|
T Consensus       123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  201 (372)
T 1k8k_C          123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SS  201 (372)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CC
T ss_pred             EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CC
Confidence            99987653322332 25678899999999999999999999999999953                  567888888 89


Q ss_pred             ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194          146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  225 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  225 (375)
                      ...|.+++|+|+++ +|++++.|+.|++||+++++.+..+..             +...+.+++|+|      ++.++++
T Consensus       202 ~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~~v~~~~~~~------~~~~l~~  261 (372)
T 1k8k_C          202 CGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLAS-------------ETLPLLAVTFIT------ESSLVAA  261 (372)
T ss_dssp             SSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEEC-------------SSCCEEEEEEEE------TTEEEEE
T ss_pred             CCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceeEEEcc-------------CCCCeEEEEEec------CCCEEEE
Confidence            99999999999998 799999999999999999998888874             357899999999      7888887


Q ss_pred             EecCCcEEEEeCCC--cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee------eee-cCCCccEEEE
Q 017194          226 AKGDGVVDVINIES--ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD------YSV-GGHTAAASCV  296 (375)
Q Consensus       226 ~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~v~~~  296 (375)
                      + .|+.|++|++.+  +.........  .....    ..+.... ...+.... ......      ..+ .+|...|.++
T Consensus       262 ~-~d~~i~i~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~  332 (372)
T 1k8k_C          262 G-HDCFPVLFTYDSAAGKLSFGGRLD--VPKQS----SQRGLTA-RERFQNLD-KKASSEGSAAAGAGLDSLHKNSVSQI  332 (372)
T ss_dssp             E-TTSSCEEEEEETTTTEEEECCCCC--CC------------CH-HHHHHHCC-CCC---------CCCSSSSSSCEEEE
T ss_pred             E-eCCeEEEEEccCcCceEEEeeccC--ccccc----hhhhcch-hhhhhhcc-cccccccCccccccccccccCCccee
Confidence            7 999999999987  3211110000  00000    0000000 00000000 000111      233 4899999999


Q ss_pred             EEeecCCCC---cEEEEecCCCeEEEEeCCCce
Q 017194          297 AFSMFGERG---KYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       297 ~~s~~~~~~---~~l~s~~~dg~i~iwd~~~~~  326 (375)
                      +|.+  ++|   .+|++|+.||.|++||+.+++
T Consensus       333 ~~~~--~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          333 SVLS--GGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEE--STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             EEec--CCCcceeeEEEecCCCceEEEEecChh
Confidence            9774  677   999999999999999998863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-38  Score=267.56  Aligned_cols=255  Identities=15%  Similarity=0.183  Sum_probs=226.0

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC----
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----   79 (375)
                      +++.+..+.+|.+.|.+++|+|+ +++|++++.||.|++||+.+++.+..+. +...|.+++|+|+++++++++.+    
T Consensus        63 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  140 (369)
T 3zwl_B           63 NGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN  140 (369)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred             CchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence            55677889999999999999998 8999999999999999999999988888 88999999999999999999998    


Q ss_pred             -CeEEEEECCCCCccc--------ccccccCCCc--ceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-ceeeeeEecCccc
Q 017194           80 -KEVKSFDVHMPASWR--------PLESYNYNKE--EINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSS  147 (375)
Q Consensus        80 -~~i~iwd~~~~~~~~--------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~  147 (375)
                       +.|++||+.......        .+..+..|..  .+.+++|+|++++|++++.||.|++||+++ .+.+..+. .|..
T Consensus       141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~  219 (369)
T 3zwl_B          141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEK  219 (369)
T ss_dssp             CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSS
T ss_pred             CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCC
Confidence             999999998654322        2223334444  899999999999999999999999999998 78888888 8999


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      .|.+++|+|++. +|++++.|+.|++||+++++.+..+.              +...+..++|+|      +++++++++
T Consensus       220 ~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--------------~~~~~~~~~~~~------~~~~l~~~~  278 (369)
T 3zwl_B          220 SISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQVLKKYE--------------TDCPLNTAVITP------LKEFIILGG  278 (369)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE--------------CSSCEEEEEECS------SSSEEEEEE
T ss_pred             ceeEEEECCCCC-EEEEecCCceEEEEECCCCceeeeec--------------CCCCceeEEecC------CCceEEEee
Confidence            999999999998 79999999999999999999888887              347899999999      799999999


Q ss_pred             cCC--------------cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194          228 GDG--------------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  293 (375)
Q Consensus       228 ~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  293 (375)
                      .++              .+++||..++                                        +.+..+.+|...|
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~----------------------------------------~~~~~~~~~~~~v  318 (369)
T 3zwl_B          279 GQEAKDVTTTSANEGKFEARFYHKIFE----------------------------------------EEIGRVQGHFGPL  318 (369)
T ss_dssp             CCC-------------CEEEEEETTTC----------------------------------------CEEEEEECCSSCE
T ss_pred             cCCCceEEEEecCCCcceeEEEecCCC----------------------------------------cchhheecccCcE
Confidence            988              7888887764                                        3445678899999


Q ss_pred             EEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      .+++|+   |++++|++++.||.|++|+++.+
T Consensus       319 ~~~~~s---~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          319 NTVAIS---PQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EEEEEC---TTSSEEEEEETTSEEEEEEECHH
T ss_pred             EEEEEC---CCCCEEEEEcCCCeEEEEECccc
Confidence            999999   99999999999999999999886

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-38  Score=273.75  Aligned_cols=267  Identities=9%  Similarity=0.074  Sum_probs=219.6

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +++....+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus       128 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          128 FNLQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             SCEEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CcceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            34445566799999999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCC---------------------cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe
Q 017194           84 SFDVHMPASWRPLESYNYNK---------------------EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR  142 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  142 (375)
                      +||+++++....+.....|.                     ..+.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            99999876655554433333                     445556668899999999999999999999988877776


Q ss_pred             cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC
Q 017194          143 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK  221 (375)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  221 (375)
                      ..|...|.+++|+|+++.+|++++.||.|++||+++++. +..+..+            +...+.++.+.       +++
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------------~~~~v~~~~~~-------~~~  347 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN------------EGTPINNVYFA-------AGA  347 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES------------TTSCEEEEEEE-------TTE
T ss_pred             cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc------------CCCCceEEEeC-------CCC
Confidence            468899999999999976799999999999999998754 6667654            45788888665       488


Q ss_pred             EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec
Q 017194          222 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF  301 (375)
Q Consensus       222 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  301 (375)
                      +|++++.||.|++||+............                               .....+..|...|.+++|+  
T Consensus       348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~~~~s--  394 (420)
T 3vl1_A          348 LFVSSGFDTSIKLDIISDPESERPAIEF-------------------------------ETPTFLVSNDDAVSQFCYV--  394 (420)
T ss_dssp             EEEEETTTEEEEEEEECCTTCCSCEECT-------------------------------TSCEEECCSSCCCCEEEEE--
T ss_pred             EEEEecCCccEEEEeccCCCCCccceec-------------------------------cCccEEccCCcceEEEEEc--
Confidence            9999999999999999874322111100                               1112355788899999999  


Q ss_pred             CCCCc---EEEEecCCCeEEEEeCCC
Q 017194          302 GERGK---YLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       302 ~~~~~---~l~s~~~dg~i~iwd~~~  324 (375)
                       |+++   .|++.+.+|.+.+|++++
T Consensus       395 -~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          395 -SDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             -CCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             -cCCCCcceEEEEcCCceEEEEeccC
Confidence             8888   677777789999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3e-38  Score=271.41  Aligned_cols=288  Identities=11%  Similarity=0.091  Sum_probs=220.0

Q ss_pred             CCeeeecCCCceeEEEEecC---CC---CEEEEeCCCCcEEEEecccCce-----eeEeeec-----CccEEEEEEe---
Q 017194            7 KPRRLRGHKATATCCIASRD---RP---GFVASSGEDGCICWFDLRSKDV-----QLVTDVG-----NGPVTSLCFK---   67 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~---~~---~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~-----~~~v~~l~~~---   67 (375)
                      .+..+.+|..+|++++|+|+   ++   ++|++++.||.|++|++.+++.     ...+..|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            57788999999999999996   36   7999999999999999999887     8888888     5999999999   


Q ss_pred             -CCCCe-EEEEcCCCeEEEEECCC------CCccc--ccccc-------cCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194           68 -SGNED-IIYVSSGKEVKSFDVHM------PASWR--PLESY-------NYNKEEINQIVCNPKSSFLACADDGGDVKII  130 (375)
Q Consensus        68 -~~~~~-l~~~~~d~~i~iwd~~~------~~~~~--~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (375)
                       |++++ |++++.|+.|++||+.+      ++...  ....+       ..|...|.+++|+|++ ++++++.||.|++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999986      43333  00033       3478899999999999 99999999999999


Q ss_pred             eCcCceeeeeEecC---c---ccceeEEEEeeCCCcEEEEeecC---CeEEEeeCCCCCcceEEecCCCCCCCCCCcccC
Q 017194          131 DIRQHCLYKSLRAG---H---SSICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN  201 (375)
Q Consensus       131 d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (375)
                      |+++++.+..+. .   |   ...|.+++|+|++. +|++++.|   +.|++||+++++.+..+...............|
T Consensus       213 d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          213 ELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             ETTTTEEEEEEE-CCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             ECCCCceeEEEe-ccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            999999999998 8   8   99999999999998 79999999   999999999998888776410000000011113


Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeE
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  281 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~  281 (375)
                      ...|.+++|+|      ++++|++++.||.|++||+++++.............    ...+              ... .
T Consensus       291 ~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~--------------~~~-g  345 (397)
T 1sq9_A          291 SSWVMSLSFND------SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE----IEED--------------ILA-V  345 (397)
T ss_dssp             SSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS----SGGG--------------CCC-B
T ss_pred             CCcEEEEEECC------CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc----chhh--------------hhc-c
Confidence            57899999999      799999999999999999997643322220000000    0000              000 0


Q ss_pred             eeeeecCCCccEEEEEEeecCCCC----------cEEEEecCCCeEEEEeCCCc
Q 017194          282 LDYSVGGHTAAASCVAFSMFGERG----------KYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       282 ~~~~~~~~~~~v~~~~~s~~~~~~----------~~l~s~~~dg~i~iwd~~~~  325 (375)
                      .......|...|.+++|+   |++          ++|++++.||.|++|+++++
T Consensus       346 ~~~~~~~~~~~v~~~~~~---~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          346 DEHGDSLAEPGVFDVKFL---KKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CTTSCBCSSCCEEEEEEE---CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccCCceeEEEec---cccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            000122348999999999   888          79999999999999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.5e-38  Score=274.11  Aligned_cols=268  Identities=13%  Similarity=0.196  Sum_probs=222.7

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc----------CceeeEeeecCccEEEEEEeCCCC-eEEEEc
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS----------KDVQLVTDVGNGPVTSLCFKSGNE-DIIYVS   77 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~----------~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~   77 (375)
                      ..+.+|.+.|++++|+|+++.+||+++.||.|++|++.+          ...+..+.+|...|.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445689999999999997568999999999999999987          567888899999999999999988 999999


Q ss_pred             CCCeEEEEECCCCCcc----cccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCc---eeeeeEecCcccce
Q 017194           78 SGKEVKSFDVHMPASW----RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSIC  149 (375)
Q Consensus        78 ~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v  149 (375)
                      .||.|++|++.++...    .....+..|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+. .|...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCe
Confidence            9999999999874322    22455667899999999999 6788999999999999999977   5677788 899999


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC-CEEEEEe
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAK  227 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~  227 (375)
                      ++++|+|++++++++|+.||.|++||+++ .+++..+..             |...|.+++|+|      ++ .+|++++
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-------------h~~~v~~i~~sp------~~~~~l~s~~  341 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-------------HKDEIFQVQWSP------HNETILASSG  341 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-------------CSSCEEEEEECS------SCTTEEEEEE
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-------------CCCCEEEEEECC------CCCCEEEEEe
Confidence            99999999987799999999999999998 456666653             468999999999      56 5799999


Q ss_pred             cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc-
Q 017194          228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-  306 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-  306 (375)
                      .||.|++||+...........           ..               .....++..+.+|...|.+++|+   |+++ 
T Consensus       342 ~d~~i~iwd~~~~~~~~~~~~-----------~~---------------~~~~~~~~~~~~h~~~v~~~~~~---p~~~~  392 (430)
T 2xyi_A          342 TDRRLHVWDLSKIGEEQSTED-----------AE---------------DGPPELLFIHGGHTAKISDFSWN---PNEPW  392 (430)
T ss_dssp             TTSCCEEEEGGGTTCCCCHHH-----------HH---------------HCCTTEEEECCCCSSCEEEEEEC---SSSTT
T ss_pred             CCCcEEEEeCCCCccccCccc-----------cc---------------cCCcceEEEcCCCCCCceEEEEC---CCCCC
Confidence            999999999986321110000           00               00113455778899999999999   8998 


Q ss_pred             EEEEecCCCeEEEEeCCCc
Q 017194          307 YLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       307 ~l~s~~~dg~i~iwd~~~~  325 (375)
                      +|++++.||.|++|++...
T Consensus       393 ~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          393 IICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEEETTSEEEEEEECHH
T ss_pred             EEEEEECCCCEEEeEcccc
Confidence            8999999999999999874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-39  Score=296.71  Aligned_cols=260  Identities=14%  Similarity=0.188  Sum_probs=214.3

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc--cCceeeEeeecCccEEEEEEeCC--CCeEEEEcCCCeEE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVK   83 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~d~~i~   83 (375)
                      +..+.+|.++|++++|+|+ +++|++|+.||+|++||+.  +++....+.+|..+|.+++|+|+  +++|++++.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            4568899999999999999 8999999999999999998  55678888999999999999988  99999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCc--eeeeeEecCcccceeEEEEeeC--
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQH--CLYKSLRAGHSSICSSVQFIPW--  157 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--  157 (375)
                      +||+.+++ ...+..+..|...|.+++|+|+  ++++++|+.||.|++||++++  .....+. +|...|.+++|+|.  
T Consensus        81 vwd~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           81 IWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC-
T ss_pred             EEECCCCc-ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCccc
Confidence            99998753 3355666778999999999999  999999999999999999877  3344566 89999999999994  


Q ss_pred             -----------CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC---CCEE
Q 017194          158 -----------KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT---NKIC  223 (375)
Q Consensus       158 -----------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~l  223 (375)
                                 +. .+++|+.||.|++||++++.........         ...|...|.+++|+|      +   ++++
T Consensus       159 ~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~---------~~~h~~~V~~l~~sp------~~~~~~~l  222 (753)
T 3jro_A          159 EEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLEST---------LEGHSDWVRDVAWSP------TVLLRSYL  222 (753)
T ss_dssp             --------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEE---------ECCCSSCEEEEEECC------CCSSSEEE
T ss_pred             ccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeee---------ecCCCCcEEEEEecc------CCCCCCEE
Confidence                       66 7999999999999999887543222110         001578899999999      7   8999


Q ss_pred             EEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC
Q 017194          224 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  303 (375)
Q Consensus       224 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  303 (375)
                      ++++.||.|++||+.++....                                   .........|...|.+++|+   |
T Consensus       223 ~s~s~Dg~I~iwd~~~~~~~~-----------------------------------~~~~~~~~~~~~~v~~l~~s---p  264 (753)
T 3jro_A          223 ASVSQDRTCIIWTQDNEQGPW-----------------------------------KKTLLKEEKFPDVLWRASWS---L  264 (753)
T ss_dssp             EEEESSSCEEEEEESSSSSCC-----------------------------------BCCBSSSSCCSSCCCCEEEC---T
T ss_pred             EEEecCCEEEEecCCCCCCcc-----------------------------------eeEEeccCCCCCceEEEEEc---C
Confidence            999999999999998743211                                   01222445688899999999   9


Q ss_pred             CCcEEEEecCCCeEEEEeCCC
Q 017194          304 RGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       304 ~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      +|++|++++.||.|++|++..
T Consensus       265 dg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          265 SGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             TTCCEEEECSSSCEECCBCCS
T ss_pred             CCCEEEEEcCCCEEEEEecCC
Confidence            999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=267.30  Aligned_cols=273  Identities=16%  Similarity=0.192  Sum_probs=217.5

Q ss_pred             ecCCCceeEEEEecCC--CCEEEEeCCCCcEEEEecccCc-eeeEeeecCccEEEEEE------eCCCCeEEEEcCCCeE
Q 017194           12 RGHKATATCCIASRDR--PGFVASSGEDGCICWFDLRSKD-VQLVTDVGNGPVTSLCF------KSGNEDIIYVSSGKEV   82 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~v~~l~~------~~~~~~l~~~~~d~~i   82 (375)
                      .+|.++|.+++|+|+.  +++|++|+.||.|++||+.+++ .+..+..|...|.++.|      +|++++|++++.|+.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            3799999999999984  5899999999999999999988 88889999999999955      6789999999999999


Q ss_pred             EEEECCCCC-cccccccccCC-CcceeEEE----EcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee
Q 017194           83 KSFDVHMPA-SWRPLESYNYN-KEEINQIV----CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        83 ~iwd~~~~~-~~~~~~~~~~~-~~~v~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  156 (375)
                      ++||+++++ ....+....++ ...+.+++    |+|+++++++++.||.|++||+++++.....  .|...|.+++|+|
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~  219 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDR  219 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESC
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCC
Confidence            999999765 23333322222 33788888    7889999999999999999999998876554  5889999999999


Q ss_pred             ---CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEecCCcE
Q 017194          157 ---WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVV  232 (375)
Q Consensus       157 ---~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i  232 (375)
                         ++. .+++++.||.|++||+++++....+...        ....|...|.+++|+|      +++ ++++++.||.|
T Consensus       220 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~i  284 (357)
T 3i2n_A          220 KDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASV--------SEKAHKSTVWQVRHLP------QNRELFLTAGGAGGL  284 (357)
T ss_dssp             SSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEE--------EEECCSSCEEEEEEET------TEEEEEEEEETTSEE
T ss_pred             CCCCCC-EEEEECCCCeEEEEeCcCCCcccceeee--------ccCCCcCCEEEEEECC------CCCcEEEEEeCCCcE
Confidence               777 7999999999999999988776655410        0001568999999999      677 89999999999


Q ss_pred             EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE-Ee
Q 017194          233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SG  311 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~-s~  311 (375)
                      ++||++.........             ++|.....        ......+..+.+|...|.+++|+   |++++|+ ++
T Consensus       285 ~iwd~~~~~~~~~~~-------------~~g~~~~~--------~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~s~  340 (357)
T 3i2n_A          285 HLWKYEYPIQRSKKD-------------SEGIEMGV--------AGSVSLLQNVTLSTQPISSLDWS---PDKRGLCVCS  340 (357)
T ss_dssp             EEEEEECCSCC--CC-------------TTSCCCCC--------CCEEEEEEEEECCSSCEEEEEEC---SSSTTEEEEE
T ss_pred             EEeecCCCccccccc-------------CCCCcccc--------ccccceeeccccCCCCeeEEEEc---CCCCeEEEEe
Confidence            999998754332111             11111100        12345677888999999999999   9999998 89


Q ss_pred             cCCCeEEEEeCCCc
Q 017194          312 GNDKLVKVWDCSRF  325 (375)
Q Consensus       312 ~~dg~i~iwd~~~~  325 (375)
                      +.||.|++||+.+.
T Consensus       341 ~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          341 SFDQTVRVLIVTKL  354 (357)
T ss_dssp             ETTSEEEEEEECC-
T ss_pred             cCCCcEEEEECCCc
Confidence            99999999999886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-39  Score=276.15  Aligned_cols=268  Identities=13%  Similarity=0.084  Sum_probs=206.8

Q ss_pred             EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194           53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI  132 (375)
Q Consensus        53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (375)
                      ....+..+|.+++|+|++++|++++.|+.|++||+.++. ...+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            345567899999999999999999999999999998652 2455667788999999999999999999999999999999


Q ss_pred             cCce---eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc---ceEEecCCCCCCCCCCcccCCCcee
Q 017194          133 RQHC---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       133 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      .+++   ....+. .|...|.+++|+|+++ +|++++.|+.|++||+++++.   ...+...            |...|.
T Consensus        85 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------h~~~v~  150 (377)
T 3dwl_C           85 RPDGTWKQTLVLL-RLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRP------------LRSTIL  150 (377)
T ss_dssp             ----CCCCEEECC-CCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSS------------CCSCEE
T ss_pred             CCCCceeeeeEec-ccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecc------------cCCCeE
Confidence            9876   556666 8999999999999998 799999999999999998773   5555542            468899


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  286 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
                      +++|+|      ++++|++++.||.|++||+............           +.+..           ....+++..+
T Consensus       151 ~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~-----------~~~~~~~~~~  202 (377)
T 3dwl_C          151 SLDWHP------NNVLLAAGCADRKAYVLSAYVRDVDAKPEAS-----------VWGSR-----------LPFNTVCAEY  202 (377)
T ss_dssp             EEEECT------TSSEEEEEESSSCEEEEEECCSSCC-CCCSC-----------SSCSC-----------CCEEEEEECC
T ss_pred             EEEEcC------CCCEEEEEeCCCEEEEEEEEecccCCCcccc-----------ccccc-----------cchhhhhhcc
Confidence            999999      7999999999999999999754321111000           00000           1123455566


Q ss_pred             cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC
Q 017194          287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                       +|...|.+++|+   |++++|++++.||.|++||+.+++...     ..+..+.+|...|.+++|+| ++++|++++.|
T Consensus       203 -~~~~~v~~~~~s---p~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~  272 (377)
T 3dwl_C          203 -PSGGWVHAVGFS---PSGNALAYAGHDSSVTIAYPSAPEQPP-----RALITVKLSQLPLRSLLWAN-ESAIVAAGYNY  272 (377)
T ss_dssp             -CCSSSEEEEEEC---TTSSCEEEEETTTEEC-CEECSTTSCE-----EECCCEECSSSCEEEEEEEE-TTEEEEEESSS
T ss_pred             -cCCceEEEEEEC---CCCCEEEEEeCCCcEEEEECCCCCCcc-----eeeEeecCCCCceEEEEEcC-CCCEEEEEcCC
Confidence             899999999999   999999999999999999999973100     11667788999999999999 99999999877


Q ss_pred             CeEEEEec
Q 017194          367 KVVKVYSI  374 (375)
Q Consensus       367 g~v~iw~~  374 (375)
                      +.+ +|+.
T Consensus       273 ~~~-~~~~  279 (377)
T 3dwl_C          273 SPI-LLQG  279 (377)
T ss_dssp             SEE-EECC
T ss_pred             cEE-EEEe
Confidence            766 6653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.2e-38  Score=271.67  Aligned_cols=297  Identities=17%  Similarity=0.201  Sum_probs=232.6

Q ss_pred             CceeEEEEecCCC---------CEEEEeCC----CCcEEEEecc--------------------------cCce-eeEee
Q 017194           16 ATATCCIASRDRP---------GFVASSGE----DGCICWFDLR--------------------------SKDV-QLVTD   55 (375)
Q Consensus        16 ~~i~~~~~~~~~~---------~~l~s~~~----d~~i~iw~~~--------------------------~~~~-~~~~~   55 (375)
                      -+..++.|.|+..         .+++.|+.    ...|.++++.                          +++. .....
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            4678889998731         35777654    3467777543                          1111 23445


Q ss_pred             ecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCCC-------CcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCc
Q 017194           56 VGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMP-------ASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGD  126 (375)
Q Consensus        56 ~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~  126 (375)
                      .|...|++++|+|+ +.+|++++.+|.|++|++.+.       .....+..+.+|...|.+++|+|++. +|++|+.||.
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            68999999999997 678999999999999999752       12455666778899999999999988 9999999999


Q ss_pred             EEEEeCcCcee-------eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC---CcceEEecCCCCCCCCC
Q 017194          127 VKIIDIRQHCL-------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG---RPNKIVNFGLPENNGNA  196 (375)
Q Consensus       127 i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~  196 (375)
                      |++||+.++..       ...+. +|...|.+++|+|++..+|++++.|+.|++||++++   +.+..+. .        
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~--------  275 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-A--------  275 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-C--------
T ss_pred             EEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-c--------
Confidence            99999987322       45566 899999999999965558999999999999999987   4555554 2        


Q ss_pred             CcccCCCceeEEeecCCccccCCCC-EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS  275 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~  275 (375)
                          |...|++++|+|      ++. ++++|+.||.|++||+++..                                  
T Consensus       276 ----~~~~v~~i~~~p------~~~~~l~tg~~dg~v~vwd~~~~~----------------------------------  311 (430)
T 2xyi_A          276 ----HTAEVNCLSFNP------YSEFILATGSADKTVALWDLRNLK----------------------------------  311 (430)
T ss_dssp             ----CSSCEEEEEECS------SCTTEEEEEETTSEEEEEETTCTT----------------------------------
T ss_pred             ----CCCCeEEEEeCC------CCCCEEEEEeCCCeEEEEeCCCCC----------------------------------
Confidence                468899999999      565 79999999999999998632                                  


Q ss_pred             CcceeEeeeeecCCCccEEEEEEeecCCCCc-EEEEecCCCeEEEEeCCCceeeee-----cchhhhhhhhcccccceee
Q 017194          276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQT-----SINNDLLIKNINLNKKVNW  349 (375)
Q Consensus       276 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~  349 (375)
                           ..+..+..|...|.+++|+   |+++ +|++++.||.|++||+........     .....++....+|...|.+
T Consensus       312 -----~~~~~~~~h~~~v~~i~~s---p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  383 (430)
T 2xyi_A          312 -----LKLHSFESHKDEIFQVQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  383 (430)
T ss_dssp             -----SCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred             -----CCeEEeecCCCCEEEEEEC---CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence                 2334667899999999999   8884 799999999999999987321110     0111445566789999999


Q ss_pred             eeecCCCCC-cEEEeeCCCeEEEEecC
Q 017194          350 LCTTPTESE-NLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       350 ~~~~~~~~~-~l~s~~~dg~v~iw~~~  375 (375)
                      ++|+| +++ +|++++.||.|++|+++
T Consensus       384 ~~~~p-~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          384 FSWNP-NEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred             EEECC-CCCCEEEEEECCCCEEEeEcc
Confidence            99999 777 89999999999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-38  Score=273.49  Aligned_cols=268  Identities=10%  Similarity=0.057  Sum_probs=211.6

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      .....|.+++|+|| |+++||++.|++|+  |...+   +.+.+|...|.+++|+|+|       .++.+.+|+.+   .
T Consensus        13 ~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~   76 (588)
T 2j04_A           13 EFEDWKNNLTWARD-GTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQ---Q   76 (588)
T ss_dssp             CCSSSSCCEEECTT-SCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC---S
T ss_pred             HhhccEEEEEECCC-CCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCC---C
Confidence            45688999999999 99999999999999  65444   4457899999999999998       45555555543   2


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc-----ceeEEEEeeCCCcEEEEeec
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS-----ICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~  167 (375)
                      ...+ .+ .|...|.+++|+|+|++||+++.||.|++||.+.  .+..+.  |..     .+.+++|+|+|+ +|++|+.
T Consensus        77 ~~~~-~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~-~LAsgs~  149 (588)
T 2j04_A           77 NGLL-NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIES-SIVVGNE  149 (588)
T ss_dssp             SCSS-TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSS-CEEEEET
T ss_pred             ceEe-ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCC-EEEEEcC
Confidence            2222 22 2368899999999999999999999999999544  444444  443     599999999999 7999999


Q ss_pred             CCeEEEeeCCCCCc-------ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          168 DSKLVMWDFSKGRP-------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       168 d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      ||+|++||+.+++.       +..+..+.         ..|...|.+++|+|      ++  +++++.|+.|++||+.+.
T Consensus       150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~---------~gh~~~V~sVawSP------dg--Laass~D~tVrlWd~~~~  212 (588)
T 2j04_A          150 DGELQFFSIRKNSENTPEFYFESSIRLSD---------AGSKDWVTHIVWYE------DV--LVAALSNNSVFSMTVSAS  212 (588)
T ss_dssp             TSEEEEEECCCCTTTCCCCEEEEEEECSC---------TTCCCCEEEEEEET------TE--EEEEETTCCEEEECCCSS
T ss_pred             CCEEEEEECCCCccccccceeeeeeeccc---------ccccccEEEEEEcC------Cc--EEEEeCCCeEEEEECCCC
Confidence            99999999998753       35554220         01567999999999      67  888999999999999864


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee-cCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      ...                                     ....++ .+|...|.+++|+     |++||+++ ++.|++
T Consensus       213 ~~~-------------------------------------~~~~tL~~~h~~~V~svaFs-----g~~LASa~-~~tIkL  249 (588)
T 2j04_A          213 SHQ-------------------------------------PVSRMIQNASRRKITDLKIV-----DYKVVLTC-PGYVHK  249 (588)
T ss_dssp             SSC-------------------------------------CCEEEEECCCSSCCCCEEEE-----TTEEEEEC-SSEEEE
T ss_pred             ccc-------------------------------------cceeeecccccCcEEEEEEE-----CCEEEEEe-CCeEEE
Confidence            210                                     112245 4788899999997     47899887 699999


Q ss_pred             EeCCCceeeeecchhhhhhhhcccccceeeeee--cCCCCCcEEEeeCCCeEEEEec
Q 017194          320 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT--TPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       320 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ||+.+++         ......+|...+..++|  +| ++..|++++.||+ ++|.+
T Consensus       250 Wd~~~~~---------~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          250 IDLKNYS---------ISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             EETTTTE---------EEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEES
T ss_pred             EECCCCe---------EEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEee
Confidence            9999873         32233389999999999  88 9999999999999 99986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-39  Score=280.65  Aligned_cols=283  Identities=13%  Similarity=0.184  Sum_probs=218.2

Q ss_pred             EecCCCCEEEEeCCCCcEEEEecccCceeeEe-eecCccEEEEEEeC-CCCeEEEEcCCCeEEEEECCC---CCcccccc
Q 017194           23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHM---PASWRPLE   97 (375)
Q Consensus        23 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~   97 (375)
                      |+|+ ++.+++++      .|+ .+++.+..+ .+|...|++++|+| ++++|++++.|+.|++||+.+   +.......
T Consensus        35 f~~~-~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           35 FGPI-QEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GCCC-CCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             cCCc-cccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            4555 55666554      487 457778888 88999999999999 999999999999999999875   33222222


Q ss_pred             cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc---CceeeeeEecC------------cccceeEEE--EeeCCCc
Q 017194           98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAG------------HSSICSSVQ--FIPWKPW  160 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~  160 (375)
                      .+ .|...|.+++|+|++++|++++.||.|++||++   +++....+. .            +...+.++.  +++++. 
T Consensus       107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-  183 (437)
T 3gre_A          107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN-CECIRKINLKNFGKNEYAVRMRAFVNEEKS-  183 (437)
T ss_dssp             EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE-EEEEEEEEGGGGSSCCCEEEEEEEECSSCE-
T ss_pred             ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc-cceeEEEEccCcccccCceEEEEEEcCCCC-
Confidence            22 478999999999999999999999999999995   444444333 2            344556665  446676 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      ++++++.|+.|++||+++++.+..+....           |...|.+++|+|      ++++|++|+.||.|++||++++
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQIIENSP-----------RHGAVSSICIDE------ECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCG-----------GGCCEEEEEECT------TSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEEEccCC-----------CCCceEEEEECC------CCCEEEEEcCCCeEEEEEcCCc
Confidence            89999999999999999999988887420           357899999999      7999999999999999999974


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec-CCCccEEEEEEee-cCCCCcEEEEecCCCeEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSM-FGERGKYLISGGNDKLVK  318 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~~~~l~s~~~dg~i~  318 (375)
                                                              +++..+. .|..+|.+++|+| +.+++.+|++|+.||.|+
T Consensus       247 ----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~  286 (437)
T 3gre_A          247 ----------------------------------------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT  286 (437)
T ss_dssp             ----------------------------------------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred             ----------------------------------------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence                                                    3334443 6778999997763 236788999999999999


Q ss_pred             EEeCCCceeeeecchh----h-hhh----------hhcc--cccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          319 VWDCSRFQGVQTSINN----D-LLI----------KNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       319 iwd~~~~~~~~~~~~~----~-~~~----------~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +||+.+++........    . ...          .+.+  |...|.+++|+  ++++|++++.||.|++||++
T Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETT
T ss_pred             EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECC
Confidence            9999988654221100    0 000          1223  88889999998  45899999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-37  Score=271.71  Aligned_cols=310  Identities=17%  Similarity=0.102  Sum_probs=227.7

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeee-----------------------------------
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDV-----------------------------------   56 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~-----------------------------------   56 (375)
                      ..++.+++|+|+ +++|+++ .++.|++||+.+++   .+..+..                                   
T Consensus         4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            358999999999 7766665 46799999999998   5555543                                   


Q ss_pred             -------------------cCccEEEEEEeCCCCeE-EEEcCCCeEEEEECC--CCCcccccccccCCCcceeEEEEcCC
Q 017194           57 -------------------GNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVH--MPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        57 -------------------~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                                         |...|.+++|+|++++| ++++.|+.|++||+.  +++....+.. ..|...|.+++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAED  160 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTT
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCC
Confidence                               23369999999999996 889899999999998  6654444432 245688999999999


Q ss_pred             CCeEEEEeCCCcEEEEeCcCceeee----eEecCcccceeEEEEeeC---CCcEEEEeecCCeEEEeeCCCCCcceEEec
Q 017194          115 SSFLACADDGGDVKIIDIRQHCLYK----SLRAGHSSICSSVQFIPW---KPWEVISGGLDSKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       115 ~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  187 (375)
                      +++|++++.+|.|++|++.+++...    .+. +|...|.+++|+|+   +. +|++++.|+.|++||+++++.+..+..
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeec
Confidence            9999999999999999998876554    677 89999999999999   77 799999999999999999988877554


Q ss_pred             CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                      +            |...|.+++|+ .      +++|++++.|+.|++||+.+++..........  ...+.+.....   
T Consensus       239 ~------------h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~---  294 (450)
T 2vdu_B          239 G------------HKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL--IKPYLNDQHLA---  294 (450)
T ss_dssp             C------------CSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTCCEEEEEECHHH--HGGGCCTTSBC---
T ss_pred             C------------CCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCCcEeeeecchhh--hhhhhhhcccc---
Confidence            4            67899999997 3      99999999999999999998765433321100  00000000000   


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeC--CCceeeeecchhhhhhhhcccc
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDC--SRFQGVQTSINNDLLIKNINLN  344 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~  344 (375)
                               .... ...........|.+++|+   |++++|++++ .|+.|++|++  ......      ..+..+..| 
T Consensus       295 ---------~~~~-~~~~~~~~~~~v~~i~~~---~~~~~l~~~~~~d~~i~iw~~~~~~~~~l------~~~~~~~~~-  354 (450)
T 2vdu_B          295 ---------PPRF-QNENNDIIEFAVSKIIKS---KNLPFVAFFVEATKCIIILEMSEKQKGDL------ALKQIITFP-  354 (450)
T ss_dssp             --------------------CBCCCEEEEEEC---SSSSEEEEEETTCSEEEEEEECSSSTTCE------EEEEEEECS-
T ss_pred             ---------cccc-cccccccceEEEEEEEEe---CCCCEEEEEECCCCeEEEEEeccCCCCce------eeccEeccC-
Confidence                     0000 000111335678999999   9999999998 8999999999  433111      233344556 


Q ss_pred             cceeeeeecCCCCCcEEEeeC------CCeEEEEec
Q 017194          345 KKVNWLCTTPTESENLVVCDT------SKVVKVYSI  374 (375)
Q Consensus       345 ~~v~~~~~~~~~~~~l~s~~~------dg~v~iw~~  374 (375)
                      +.|.+++|+| ++.++++++.      +..|.+|.+
T Consensus       355 ~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          355 YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEE
Confidence            8899999999 6543443333      456888865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.3e-37  Score=260.12  Aligned_cols=290  Identities=8%  Similarity=0.074  Sum_probs=210.7

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEV   82 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i   82 (375)
                      +...+.++.+|.+.|++++|+|+ +++|++|+.++ ++||++++++.......  ..+..+++.++++.+ ++++.|++|
T Consensus         8 ~~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A            8 TRNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             -----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             ccCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEE
Confidence            34456677899999999999999 89999998775 78999988766554432  357888898888877 456778999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ++||+.+++....+.    +...|.++.++++.  ++++ .++.|++||+.++ +.+..+. .   +...+++++  . .
T Consensus        84 ~iWd~~~~~~~~~~~----~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~-~---~~~~~~~s~--~-~  149 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK----VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI-R---FGGVCEFSN--G-L  149 (355)
T ss_dssp             EEEETTTTEEEEEEE----CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE-E---EEEEEEEET--T-E
T ss_pred             EEEECCCCcEEEEEE----CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec-c---CCceEEEEc--c-E
Confidence            999999876544433    36689999998864  4444 4789999999988 7777776 3   445566777  3 4


Q ss_pred             EEE--eecCCeEEEeeCCCCCc----------------ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194          162 VIS--GGLDSKLVMWDFSKGRP----------------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       162 l~~--~~~d~~i~~wd~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                      ++.  |+.||.|++||+++++.                +..+. +            |...|.+++|+|      ++++|
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~------------h~~~v~~~~~s~------~g~~l  210 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-A------------HTNPIKMVRLNR------KSDMV  210 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEEC-C------------CSSCEEEEEECT------TSSEE
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-c------------cCCceEEEEECC------CCCEE
Confidence            555  68999999999997651                33333 2            678999999999      89999


Q ss_pred             EEEecCCc-EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec-C-CCccEEEEEEee
Q 017194          224 VVAKGDGV-VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-G-HTAAASCVAFSM  300 (375)
Q Consensus       224 ~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~  300 (375)
                      ++|+.||+ |++||++++                                        +++..+. + |...|.+++|+ 
T Consensus       211 ~s~s~d~~~v~iwd~~~~----------------------------------------~~~~~~~~g~h~~~v~~~~~s-  249 (355)
T 3vu4_A          211 ATCSQDGTIIRVFKTEDG----------------------------------------VLVREFRRGLDRADVVDMKWS-  249 (355)
T ss_dssp             EEEETTCSEEEEEETTTC----------------------------------------CEEEEEECTTCCSCEEEEEEC-
T ss_pred             EEEeCCCCEEEEEECCCC----------------------------------------cEEEEEEcCCCCCcEEEEEEC-
Confidence            99999998 999999975                                        3334555 4 89999999999 


Q ss_pred             cCCCCcEEEEecCCCeEEEEeCCCceeeeecchhh-hh-------------hhhcccccceeeeeecCCCCCcEEEeeCC
Q 017194          301 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND-LL-------------IKNINLNKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       301 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~-------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                        |++++|++++.|+.|++||+..........-.. ..             ............++|++ ++++|++++.|
T Consensus       250 --~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~d  326 (355)
T 3vu4_A          250 --TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHT  326 (355)
T ss_dssp             --TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTT
T ss_pred             --CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCC
Confidence              999999999999999999998753211000000 00             00011122346689999 99999999999


Q ss_pred             CeEEEEec
Q 017194          367 KVVKVYSI  374 (375)
Q Consensus       367 g~v~iw~~  374 (375)
                      |.+++|++
T Consensus       327 g~~~~~~~  334 (355)
T 3vu4_A          327 RMIETFKV  334 (355)
T ss_dssp             TEEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-38  Score=289.01  Aligned_cols=267  Identities=17%  Similarity=0.213  Sum_probs=216.9

Q ss_pred             eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEE
Q 017194           51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVK  128 (375)
Q Consensus        51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~  128 (375)
                      +..+.+|.++|++++|+|++++|++++.||.|++||+..+ ....+..+.+|...|.+++|+|+  +++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            3467889999999999999999999999999999998743 24566677889999999999988  99999999999999


Q ss_pred             EEeCcCce--eeeeEecCcccceeEEEEeeC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCc
Q 017194          129 IIDIRQHC--LYKSLRAGHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF  204 (375)
Q Consensus       129 iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (375)
                      +||+.+++  .+..+. +|...|.+++|+|+  +. .+++++.||.|++||++++.........           .+...
T Consensus        81 vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~-----------~~~~~  147 (753)
T 3jro_A           81 IWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIID-----------AHAIG  147 (753)
T ss_dssp             EEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEE-----------CCSSC
T ss_pred             EEECCCCccccccccc-CCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEee-----------cCCCc
Confidence            99999886  667777 89999999999999  77 8999999999999999987443322211           15688


Q ss_pred             eeEEeecCCc-------cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          205 VHAIAIPDAD-------MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       205 v~~~~~~~~~-------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                      |.+++|+|..       ...+++.++++|+.||.|++||++++.                                    
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~------------------------------------  191 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------------------------------  191 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT------------------------------------
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc------------------------------------
Confidence            9999999820       001138899999999999999998642                                    


Q ss_pred             ceeEeeeeecCCCccEEEEEEeecCCC---CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC
Q 017194          278 KRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  354 (375)
                      ........+.+|...|.+++|+   |+   +++|++++.||.|++||+.+++...    .........|...|.+++|+|
T Consensus       192 ~~~~~~~~~~~h~~~V~~l~~s---p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~sp  264 (753)
T 3jro_A          192 QTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSL  264 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEESSSCEEEEEESSSSSCC----BCCBSSSSCCSSCCCCEEECT
T ss_pred             ccceeeeeecCCCCcEEEEEec---cCCCCCCEEEEEecCCEEEEecCCCCCCcc----eeEEeccCCCCCceEEEEEcC
Confidence            2234556788999999999999   88   8999999999999999999863110    013334456889999999999


Q ss_pred             CCCCcEEEeeCCCeEEEEecC
Q 017194          355 TESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       355 ~~~~~l~s~~~dg~v~iw~~~  375 (375)
                       ++++|++++.||.|++|+++
T Consensus       265 -dg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          265 -SGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             -TTCCEEEECSSSCEECCBCC
T ss_pred             -CCCEEEEEcCCCEEEEEecC
Confidence             99999999999999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=261.27  Aligned_cols=288  Identities=16%  Similarity=0.172  Sum_probs=202.8

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCC---CeEEEEcCCCeEEEEECCC
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN---EDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~~d~~i~iwd~~~   89 (375)
                      +|...|.+++|+|+++.+|++++.||.|++||+.+++....+. +...+.++.|+|.+   .++++++.++.|++||+++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            6999999999999658899999999999999999998887776 78899999998854   4899999999999999987


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCce-eeeeE---------------ecCcccceeEE
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHC-LYKSL---------------RAGHSSICSSV  152 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~~v~~~  152 (375)
                      ++   .+..+..|...|.+++|+|++++ +++++.||.|++||++++. .+..+               . .|...|.++
T Consensus       176 ~~---~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~  251 (408)
T 4a11_B          176 GS---CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT-AHNGKVNGL  251 (408)
T ss_dssp             SC---CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC-SCSSCEEEE
T ss_pred             cc---eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc-cccCceeEE
Confidence            54   44556678899999999999984 8899999999999998664 33333               4 688999999


Q ss_pred             EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194          153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  232 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i  232 (375)
                      +|+|+++ +|++++.|+.|++||+++++...........       .............       .+..+++++.++.|
T Consensus       252 ~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~i  316 (408)
T 4a11_B          252 CFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCN-------NSKKGLKFTVSCG-------CSSEFVFVPYGSTI  316 (408)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCC-------CCSSCCCCEECCS-------SSSCEEEEEETTEE
T ss_pred             EEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccc-------cccccceeEEecC-------CCceEEEEecCCEE
Confidence            9999998 7999999999999999988765443311000       0001111122222       46677788889999


Q ss_pred             EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec
Q 017194          233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG  312 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~  312 (375)
                      ++||+.++                                        +.+..+.+|...|.+++|+   |++++|++++
T Consensus       317 ~v~d~~~~----------------------------------------~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~  353 (408)
T 4a11_B          317 AVYTVYSG----------------------------------------EQITMLKGHYKTVDCCVFQ---SNFQELYSGS  353 (408)
T ss_dssp             EEEETTTC----------------------------------------CEEEEECCCSSCEEEEEEE---TTTTEEEEEE
T ss_pred             EEEECcCC----------------------------------------cceeeeccCCCeEEEEEEc---CCCCEEEEEC
Confidence            99999874                                        3445778899999999999   9999999999


Q ss_pred             CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          313 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       313 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      .||.|++||+.+.+         .+.....+.   ....+.+.....+.+++.|+.+++|+.+
T Consensus       354 ~dg~i~iw~~~~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          354 RDCNILAWVPSLYE---------PVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             TTSCEEEEEECC---------------------------------------------------
T ss_pred             CCCeEEEEeCCCCC---------ccCCCCceE---eccccccccceeecccCccCceeecCCc
Confidence            99999999999984         332222221   1223444344566677889999999853

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.1e-37  Score=263.70  Aligned_cols=255  Identities=11%  Similarity=0.119  Sum_probs=204.3

Q ss_pred             ccCceeeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeC
Q 017194           46 RSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADD  123 (375)
Q Consensus        46 ~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  123 (375)
                      .+.+....+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++....+ ...+|...|.+++|+| ++++|++++.
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~  139 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-QGMGPGDAITGMKFNQFNTNQLFVSSI  139 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-CCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-ecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence            4455567788899999999999999 89999999999999999976543322 3346889999999999 7799999999


Q ss_pred             CCcEEEEeCcCceeeeeEec--CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC
Q 017194          124 GGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN  201 (375)
Q Consensus       124 dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (375)
                      |+.|++||+++ ..+..+..  .|...|.+++|+|+++ +|++++.|+.|++||++ ++.+..+..             |
T Consensus       140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~-------------h  203 (383)
T 3ei3_B          140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKL-------------H  203 (383)
T ss_dssp             TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEEC-------------S
T ss_pred             CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEecc-------------C
Confidence            99999999985 44555541  3347899999999998 79999999999999994 666776663             4


Q ss_pred             CCceeEEeecCCccccCCCC-EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          202 PAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                      ...|.+++|+|      +++ ++++++.|+.|++||+++....                                    .
T Consensus       204 ~~~v~~~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~------------------------------------~  241 (383)
T 3ei3_B          204 KAKVTHAEFNP------RCDWLMATSSVDATVKLWDLRNIKDK------------------------------------N  241 (383)
T ss_dssp             SSCEEEEEECS------SCTTEEEEEETTSEEEEEEGGGCCST------------------------------------T
T ss_pred             CCcEEEEEECC------CCCCEEEEEeCCCEEEEEeCCCCCcc------------------------------------c
Confidence            68999999999      677 9999999999999999863210                                    1


Q ss_pred             EeeeeecCCCccEEEEEEeecCC-CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc----------------
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL----------------  343 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------------  343 (375)
                      .++..+ +|...|.+++|+   | ++++|++++.|+.|++||+.+++.         ...+.+|                
T Consensus       242 ~~~~~~-~~~~~v~~~~~s---~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  308 (383)
T 3ei3_B          242 SYIAEM-PHEKPVNAAYFN---PTDSTKLLTTDQRNEIRVYSSYDWSK---------PDQIIIHPHRQFQHLTPIKATWH  308 (383)
T ss_dssp             CEEEEE-ECSSCEEEEEEC---TTTSCEEEEEESSSEEEEEETTBTTS---------CSEEEECCBCCCTTSCCCCCEEC
T ss_pred             ceEEEe-cCCCceEEEEEc---CCCCCEEEEEcCCCcEEEEECCCCcc---------ccccccccccccccccceEEecc
Confidence            222233 588999999999   8 999999999999999999998743         2222222                


Q ss_pred             -ccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          344 -NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       344 -~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                       .+.+..++++| ++++  +++.||.|++||++
T Consensus       309 p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          309 PMYDLIVAGRYP-DDQL--LLNDKRTIDIYDAN  338 (383)
T ss_dssp             SSSSEEEEECBC-CTTT--CTTCCCCEEEEETT
T ss_pred             CCCCceEEEecC-Cccc--ccCCCCeEEEEecC
Confidence             23455577777 7776  88899999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-38  Score=262.68  Aligned_cols=271  Identities=13%  Similarity=0.081  Sum_probs=206.3

Q ss_pred             EecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC------ccccc
Q 017194           23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA------SWRPL   96 (375)
Q Consensus        23 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~   96 (375)
                      +.++ +.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+.....      ....+
T Consensus        44 ~~~d-~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           44 MYYD-KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSEE-EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hcCC-CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            3345 6889999999999999999999888776  467888889987   9999999999999876321      11112


Q ss_pred             ccc-cCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194           97 ESY-NYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        97 ~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                      ..+ ..|...|.+++|+|  +++++++++.||.|++||+++++.+..+...|...+.+++|+|++. +|++|+.||.|++
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~i  196 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDV  196 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEE
Confidence            222 24568899999999  9999999999999999999999887766424566899999999998 8999999999999


Q ss_pred             eeCCCCCcc-eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          174 WDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       174 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      ||+++++.. ..+...            |...|.+++|+|      ++.+|++++ ++.|++||+++.......      
T Consensus       197 wd~~~~~~~~~~~~~~------------h~~~v~~l~fs~------~g~~l~s~~-~~~v~iwd~~~~~~~~~~------  251 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVD------------EEAKIKEVKFAD------NGYWMVVEC-DQTVVCFDLRKDVGTLAY------  251 (343)
T ss_dssp             EESSCTTSCCEECCCC------------TTSCEEEEEECT------TSSEEEEEE-SSBEEEEETTSSTTCBSS------
T ss_pred             EECCCCCCCccEEecc------------CCCCEEEEEEeC------CCCEEEEEe-CCeEEEEEcCCCCcceee------
Confidence            999999877 666643            568999999999      799999999 559999999975322111      


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE--EEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeee
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA--SCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQ  329 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~  329 (375)
                                                     ..+..|...+  .+++|+   |+|++|++++. |+.|++|++...... 
T Consensus       252 -------------------------------~~~~~~~~~~~~~~~~~~---~~g~~l~~~s~~d~~i~v~~~~~~~~~-  296 (343)
T 3lrv_A          252 -------------------------------PTYTIPEFKTGTVTYDID---DSGKNMIAYSNESNSLTIYKFDKKTKN-  296 (343)
T ss_dssp             -------------------------------CCCBC-----CCEEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCS-
T ss_pred             -------------------------------cccccccccccceEEEEC---CCCCEEEEecCCCCcEEEEEEcccccc-
Confidence                                           1122232333  469999   99999999888 999999999765311 


Q ss_pred             ecchhhhhhhhcccccceeeeeecC--CCCCcEEEeeCCCeEEEE
Q 017194          330 TSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCDTSKVVKVY  372 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~v~iw  372 (375)
                             ...     .++..++|.+  .+.+.+++++.||.+.++
T Consensus       297 -------~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          297 -------WTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             -------EEE-----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             -------eEe-----cCceeEecCccccccceeEEEecCCceEEE
Confidence                   100     4566666665  245677777788877765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.7e-36  Score=248.25  Aligned_cols=253  Identities=14%  Similarity=0.211  Sum_probs=214.4

Q ss_pred             CCCCCeeee--cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194            4 AEAKPRRLR--GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE   81 (375)
Q Consensus         4 ~~~~~~~l~--~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~   81 (375)
                      +++.++.++  +|...|++++|+|+ +++||+|+.||+|++|++++++.+..+.+|...+.++.+.  +..+++++.++.
T Consensus        54 tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~  130 (318)
T 4ggc_A           54 SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGH  130 (318)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred             CCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCc
Confidence            555556554  68888999999999 8999999999999999999999999999999988876654  678999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee----eeeEecCcccceeEEEEeeC
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL----YKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~  157 (375)
                      +++|+.....  ..+..+.+|...+..+.+.++++++++++.|+.|++||+++++.    ..... .+...|.+++++|+
T Consensus       131 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~  207 (318)
T 4ggc_A          131 IHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPW  207 (318)
T ss_dssp             EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CCCSCEEEEEECTT
T ss_pred             eEeeecCCCc--eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec-ccCCceEEEEecCC
Confidence            9999987643  44556677899999999999999999999999999999987643    33444 67889999999998


Q ss_pred             CCcEE--EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe--cCCcEE
Q 017194          158 KPWEV--ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVD  233 (375)
Q Consensus       158 ~~~~l--~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~dg~i~  233 (375)
                      +..++  ++++.++.|++||.+.........              +...+..+.++|      ++..+++++  .|+.|+
T Consensus       208 ~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--------------~~~~v~~~~~~~------~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVD--------------AHSQVCSILWSP------HYKELISGHGFAQNQLV  267 (318)
T ss_dssp             STTEEEEEECTTTCEEEEEETTTCCEEEEEE--------------CSSCEEEEEEET------TTTEEEEEECTTTCCEE
T ss_pred             CCcEEEEEecCCCCEEEEEeccccccccccc--------------ceeeeeeeeecc------cccceEEEEEcCCCEEE
Confidence            87544  456788999999999887776665              347889999998      677776654  789999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||++++                                        +++.++.+|...|++++|+   |+|++|+||+.
T Consensus       268 iwd~~~~----------------------------------------~~~~~l~gH~~~V~~l~~s---pdg~~l~S~s~  304 (318)
T 4ggc_A          268 IWKYPTM----------------------------------------AKVAELKGHTSRVLSLTMS---PDGATVASAAA  304 (318)
T ss_dssp             EEETTTC----------------------------------------CEEEEECCCSSCEEEEEEC---TTSSCEEEEET
T ss_pred             EEECCCC----------------------------------------cEEEEEcCCCCCEEEEEEc---CCCCEEEEEec
Confidence            9999874                                        4456788999999999999   99999999999


Q ss_pred             CCeEEEEeCCCc
Q 017194          314 DKLVKVWDCSRF  325 (375)
Q Consensus       314 dg~i~iwd~~~~  325 (375)
                      ||+|+|||+...
T Consensus       305 D~~v~iWd~~~~  316 (318)
T 4ggc_A          305 DETLRLWRCFEL  316 (318)
T ss_dssp             TTEEEEECCSCC
T ss_pred             CCeEEEEECCCC
Confidence            999999999764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.2e-37  Score=263.44  Aligned_cols=256  Identities=12%  Similarity=0.168  Sum_probs=213.5

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-------ceeeEeeecCccEEEEEEeCCC-CeEEEEcC
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGN-EDIIYVSS   78 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~   78 (375)
                      .+..+.+|.+.|++++|+|+++++|++|+.||+|++||+.++       +.+..+.+|...|.+++|+|++ ++|++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            456788999999999999933899999999999999999987       5678889999999999999998 68999999


Q ss_pred             CCeEEEEECCCCCcccccccc--cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE-ecCcccc-eeEEEE
Q 017194           79 GKEVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSI-CSSVQF  154 (375)
Q Consensus        79 d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-v~~~~~  154 (375)
                      |+.|++||+++++.   +..+  ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ . .|... +.++.|
T Consensus       153 dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~  228 (402)
T 2aq5_A          153 DNVILVWDVGTGAA---VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR-PHEGTRPVHAVF  228 (402)
T ss_dssp             TSCEEEEETTTTEE---EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-SSCSSSCCEEEE
T ss_pred             CCEEEEEECCCCCc---cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc-CCCCCcceEEEE
Confidence            99999999997643   3344  567899999999999999999999999999999999998888 5 77765 899999


Q ss_pred             eeCCCcEEEEe---ecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE-EEecC
Q 017194          155 IPWKPWEVISG---GLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGD  229 (375)
Q Consensus       155 ~~~~~~~l~~~---~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d  229 (375)
                      +|++. +++++   +.|+.|++||+++++. +......            +...+.+++|+|      ++++|+ +++.|
T Consensus       229 ~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~------~~~~l~~~g~~d  289 (402)
T 2aq5_A          229 VSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELD------------TSSGVLLPFFDP------DTNIVYLCGKGD  289 (402)
T ss_dssp             CSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECC------------CCSSCEEEEEET------TTTEEEEEETTC
T ss_pred             cCCCc-EEEEeccCCCCceEEEEcCccccCCceEEecc------------CCCceeEEEEcC------CCCEEEEEEcCC
Confidence            99987 78888   7899999999998765 4444433            456799999999      788886 45579


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI  309 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~  309 (375)
                      |.|++||+.+++.                                    ....+..+. |..+|.+++|+   |++.+++
T Consensus       290 g~i~i~d~~~~~~------------------------------------~~~~l~~~~-~~~~v~~~~~s---p~~~~~~  329 (402)
T 2aq5_A          290 SSIRYFEITSEAP------------------------------------FLHYLSMFS-SKESQRGMGYM---PKRGLEV  329 (402)
T ss_dssp             SCEEEEEECSSTT------------------------------------CEEEEEEEC-CSSCCSEEEEC---CGGGSCG
T ss_pred             CeEEEEEecCCCc------------------------------------ceEeecccc-cCCcccceEEe---cccccce
Confidence            9999999987421                                    012222333 66899999999   8998877


Q ss_pred             EecCCCeEEEEeCCCcee
Q 017194          310 SGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       310 s~~~dg~i~iwd~~~~~~  327 (375)
                      +  .++.+++|++.++..
T Consensus       330 s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          330 N--KCEIARFYKLHERKC  345 (402)
T ss_dssp             G--GTEEEEEEEEETTEE
T ss_pred             e--cceeEEEEEcCCCcE
Confidence            5  456999999988643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.3e-37  Score=266.22  Aligned_cols=318  Identities=12%  Similarity=0.029  Sum_probs=209.0

Q ss_pred             CceeEEEE---ecCCCCEEEEeCCCCcEEEEecccCce-------eeE--eeecCccEEEEEEe----------------
Q 017194           16 ATATCCIA---SRDRPGFVASSGEDGCICWFDLRSKDV-------QLV--TDVGNGPVTSLCFK----------------   67 (375)
Q Consensus        16 ~~i~~~~~---~~~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~--~~~~~~~v~~l~~~----------------   67 (375)
                      ....++.|   +|+...+++.| .++.|.+|+......       ...  .-.+..++..+.|+                
T Consensus        16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (393)
T 4gq1_A           16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV   94 (393)
T ss_dssp             CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred             CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence            34456677   34434455555 577899998643211       011  11234445555443                


Q ss_pred             ----CCCCeEEEEcCCCeEEEEECCCCCcc--cccccccCCCcceeEEEEcC--------CCCeEEEEeCCCcEEEEeCc
Q 017194           68 ----SGNEDIIYVSSGKEVKSFDVHMPASW--RPLESYNYNKEEINQIVCNP--------KSSFLACADDGGDVKIIDIR  133 (375)
Q Consensus        68 ----~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iwd~~  133 (375)
                          +++.+|++++.|++|++||.+++...  ..+..+.+|.+.|++++|+|        ++++|++++.|++|++||++
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence                44567999999999999999876432  34567889999999999998        78899999999999999999


Q ss_pred             CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCC------------CCCCCcccC
Q 017194          134 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN------------NGNAGQCYN  201 (375)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~------------~~~~~~~~~  201 (375)
                      ++..+..+. .|...+.+++|+|++..+|++++.|++|++||+++++............            ........+
T Consensus       175 ~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  253 (393)
T 4gq1_A          175 DEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI  253 (393)
T ss_dssp             TTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred             CCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence            888777777 7999999999999986579999999999999999877654433110000            000111124


Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeE
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  281 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~  281 (375)
                      ...+.++.|.+.     +++.+++++.|+.+++||+............ ........+.|+++.                
T Consensus       254 ~~~v~~v~~~~~-----dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~~~~~----------------  311 (393)
T 4gq1_A          254 ASSLANVRWIGS-----DGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNLLPNVQG----------------  311 (393)
T ss_dssp             SSSCSEEEEETT-----TTCEEEEECTTSEEEEEEC--------------------CCSCSEEE----------------
T ss_pred             cccceeeeeecC-----CCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEEcccccc----------------
Confidence            567788888732     8999999999999999999876443322211 112222333333321                


Q ss_pred             eeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEE
Q 017194          282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV  361 (375)
Q Consensus       282 ~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  361 (375)
                          ...+...+.. .++|. .++.++++|+.||.|++||+.++         .......+|..+|.+++|+| ||++||
T Consensus       312 ----~~~~~~~~~~-~~~~~-~~~~~~~sgs~Dg~V~lwd~~~~---------~~~~~~~~~~~~V~svafsp-dG~~LA  375 (393)
T 4gq1_A          312 ----ISLFPSLLGA-CPHPR-YMDYFATAHSQHGLIQLINTYEK---------DSNSIPIQLGMPIVDFCWHQ-DGSHLA  375 (393)
T ss_dssp             ----ECSSCCSSCC-EECSS-CTTEEEEEETTTTEEEEEETTCT---------TCCEEEEECSSCEEEEEECT-TSSEEE
T ss_pred             ----ccccCcceeE-EEccC-CCCEEEEEECCCCEEEEEECCCC---------cEEEEecCCCCcEEEEEEcC-CCCEEE
Confidence                1222222233 34321 35667888999999999999998         55566778999999999999 999999


Q ss_pred             EeeCCCeEEEEec
Q 017194          362 VCDTSKVVKVYSI  374 (375)
Q Consensus       362 s~~~dg~v~iw~~  374 (375)
                      +++.|| +.+|++
T Consensus       376 ~as~~G-v~lvrL  387 (393)
T 4gq1_A          376 IATEGS-VLLTRL  387 (393)
T ss_dssp             EEESSE-EEEEEE
T ss_pred             EEeCCC-eEEEEE
Confidence            998776 555543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.5e-37  Score=266.77  Aligned_cols=255  Identities=16%  Similarity=0.106  Sum_probs=193.8

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee--cCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ..+.+|.++|++|+|+|.++++|++|+.||+|++||++++........  +...+.+++|+|++++|++|+.||.|++||
T Consensus       158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd  237 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN  237 (435)
T ss_dssp             ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred             EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence            345689999999999996689999999999999999987654333332  345678999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeE---ecCcccceeEEEEeeCCCcEE
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSL---RAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      ++.    +.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++.+....+   . +|...|++++|+|++. +|
T Consensus       238 ~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~-~l  311 (435)
T 4e54_B          238 MDG----KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGA-RL  311 (435)
T ss_dssp             SSS----CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC-BCSSCEEECCBCTTSS-EE
T ss_pred             cCc----ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee-eccccccceeECCCCC-ee
Confidence            874    34556678899999999999876 6888999999999999876544333   4 7899999999999998 79


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe------------cCC
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK------------GDG  230 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~------------~dg  230 (375)
                      ++++.|+.|++||+++++....+.... ....      ....+....++|      ++..++++.            .++
T Consensus       312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~  378 (435)
T 4e54_B          312 LTTDQKSEIRVYSASQWDCPLGLIPHP-HRHF------QHLTPIKAAWHP------RYNLIVVGRYPDPNFKSCTPYELR  378 (435)
T ss_dssp             EEEESSSCEEEEESSSSSSEEEECCCC-CCCC------SSSCCCBCEECS------SSSCEEEECCCCTTSCCSSTTCCC
T ss_pred             EEEcCCCEEEEEECCCCccceEEeccc-cccc------ccceeEEEEEcC------CCCEEEEEEcCCCCeEEEEecCCC
Confidence            999999999999999988777665321 1000      011122334444      344444443            345


Q ss_pred             cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee-ecCCCccEEEE-EEeecCCCCcEE
Q 017194          231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAAASCV-AFSMFGERGKYL  308 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~s~~~~~~~~l  308 (375)
                      .|++||..+++                                        .+.. ..+|...|.++ +|+   |+|++|
T Consensus       379 ~i~iwd~~~g~----------------------------------------~~~~l~~~~~~~v~s~~~fs---pdg~~l  415 (435)
T 4e54_B          379 TIDVFDGNSGK----------------------------------------MMCQLYDPESSGISSLNEFN---PMGDTL  415 (435)
T ss_dssp             CEEEECSSSCC----------------------------------------EEEEECCSSCCCCCCEEEEC---TTSSCE
T ss_pred             EEEEEECCCCc----------------------------------------EEEEEeCCCCCcEEEEEEEC---CCCCEE
Confidence            79999998753                                        2223 34677788887 699   999999


Q ss_pred             EEecCCCeEEEEeCCCce
Q 017194          309 ISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       309 ~s~~~dg~i~iwd~~~~~  326 (375)
                      ++|+ |+.|+||++++++
T Consensus       416 asg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          416 ASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             EEEC-SSEEEECCCC---
T ss_pred             EEEc-CCcEEEEECCcCe
Confidence            9887 7899999999873

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.9e-37  Score=259.29  Aligned_cols=244  Identities=12%  Similarity=0.130  Sum_probs=190.8

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEe-----------CCCCcEEEEecccCceeeE-e--------eecCccEEEEEEeCC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASS-----------GEDGCICWFDLRSKDVQLV-T--------DVGNGPVTSLCFKSG   69 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~-----------~~d~~i~iw~~~~~~~~~~-~--------~~~~~~v~~l~~~~~   69 (375)
                      .|.+|.+.|.++++++   +.+++|           +.|+.+++|++.+.+.... .        ..+...+.+++|+||
T Consensus        68 ~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             ECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            4678889999888764   455554           4578899999876543211 1        123456899999999


Q ss_pred             CCeEEEEc--CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee--eEecCc
Q 017194           70 NEDIIYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK--SLRAGH  145 (375)
Q Consensus        70 ~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~  145 (375)
                      |+++++++  .|++|++||+++++....+   . |...|.+++|+|+++++++++.+ .+.+|+..+++.+.  ... .|
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~~~~~~---~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~-~~  218 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLTEKFEI---E-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF-DK  218 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTEEEEEE---E-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC-CT
T ss_pred             CCEEEEEECCCCCEEEEeECCCCcEEEEe---C-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC-CC
Confidence            99987554  6899999999986554433   2 56789999999999999999865 56666666665543  233 68


Q ss_pred             ccceeEEEEeeCCCcEEEEeecCC----eEEEeeCCCCCcce----EEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          146 SSICSSVQFIPWKPWEVISGGLDS----KLVMWDFSKGRPNK----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      ...|.+++|+|++. .+++++.|+    .+++||+.......    .+. +            +...|++++|+|     
T Consensus       219 ~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~------------~~~~V~~~~~Sp-----  279 (365)
T 4h5i_A          219 NWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-N------------RFKGITSMDVDM-----  279 (365)
T ss_dssp             TEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-S------------SCSCEEEEEECT-----
T ss_pred             CCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeec-C------------CCCCeEeEEECC-----
Confidence            88999999999998 788888877    68889987654322    222 2            467899999999     


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee-ecCCCccEEEE
Q 017194          218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAAASCV  296 (375)
Q Consensus       218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~  296 (375)
                       ++++||+|+.|+.|+|||++++                                        +++.. +.+|..+|+++
T Consensus       280 -dg~~lasgs~D~~V~iwd~~~~----------------------------------------~~~~~~~~gH~~~V~~v  318 (365)
T 4h5i_A          280 -KGELAVLASNDNSIALVKLKDL----------------------------------------SMSKIFKQAHSFAITEV  318 (365)
T ss_dssp             -TSCEEEEEETTSCEEEEETTTT----------------------------------------EEEEEETTSSSSCEEEE
T ss_pred             -CCCceEEEcCCCEEEEEECCCC----------------------------------------cEEEEecCcccCCEEEE
Confidence             8999999999999999999975                                        33444 57899999999


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      +|+   |||++||+|+.|++|+|||+...
T Consensus       319 ~fS---pdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          319 TIS---PDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEC---TTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEC---CCCCEEEEEeCCCeEEEEEcCCC
Confidence            999   99999999999999999999764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.3e-36  Score=264.13  Aligned_cols=255  Identities=17%  Similarity=0.265  Sum_probs=215.9

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +++.+..+.+|.+.|.+++|  + +++|++|+.||+|++||+.+++.+..+..|...|.+++|++  ..+++++.|+.|+
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  236 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIA  236 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEE
T ss_pred             CCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEE
Confidence            55677889999999999999  4 78999999999999999999999999999999999999974  5899999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +||+.++........+.+|...|.+++|  +++++++|+.||.|++||+++++.+..+. +|...|.++.+.  +. +++
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~  310 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DR-LVV  310 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TT-EEE
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CC-EEE
Confidence            9999987665555667788999999999  77899999999999999999999999999 999999999995  44 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +|+.||.|++||+++++++..+..             |...|.++++        ++.+|++|+.||.|++||+.+....
T Consensus       311 ~g~~dg~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~--------~~~~l~sg~~dg~i~vwd~~~~~~~  369 (435)
T 1p22_A          311 SGSSDNTIRLWDIECGACLRVLEG-------------HEELVRCIRF--------DNKRIVSGAYDGKIKVWDLVAALDP  369 (435)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC-------------CSSCEEEEEC--------CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred             EEeCCCeEEEEECCCCCEEEEEeC-------------CcCcEEEEEe--------cCCEEEEEeCCCcEEEEECCCCCCc
Confidence            999999999999999998888763             4678999998        4889999999999999999764311


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                      ....                               ...++..+.+|...|.+++|.     +++|++++.||.|++||+.
T Consensus       370 ~~~~-------------------------------~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          370 RAPA-------------------------------GTLCLRTLVEHSGRVFRLQFD-----EFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             TSCT-------------------------------TTTEEEEECCCSSCCCCEEEC-----SSCEEECCSSSEEEEEC--
T ss_pred             cccc-------------------------------cchheeeccCCCCCeEEEEeC-----CCEEEEEeCCCEEEEEECC
Confidence            1000                               001445778899999999874     6789999999999999998


Q ss_pred             Cce
Q 017194          324 RFQ  326 (375)
Q Consensus       324 ~~~  326 (375)
                      +..
T Consensus       414 ~~~  416 (435)
T 1p22_A          414 NDP  416 (435)
T ss_dssp             ---
T ss_pred             CCC
Confidence            863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.3e-37  Score=258.26  Aligned_cols=250  Identities=9%  Similarity=0.029  Sum_probs=205.3

Q ss_pred             EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEe
Q 017194           53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIID  131 (375)
Q Consensus        53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  131 (375)
                      ...+|...|.+++|+|++++|++++.|+.|++|++.++...........|...|.+++|+|+++ +|++++.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            3457999999999999999999999999999999987653333444557889999999999999 999999999999999


Q ss_pred             C-cCceeeeeEecC--cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC---------CCcceEEecCCCCCCCCCCcc
Q 017194          132 I-RQHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---------GRPNKIVNFGLPENNGNAGQC  199 (375)
Q Consensus       132 ~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~  199 (375)
                      + .+++. ..+. +  |...|.+++|+| +. .+++++.|+.|++||+++         ++++..+.             
T Consensus        86 ~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------  148 (342)
T 1yfq_A           86 LIGSPSF-QALT-NNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------------  148 (342)
T ss_dssp             SSSSSSE-EECB-SCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-------------
T ss_pred             eccCCce-Eecc-ccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-------------
Confidence            9 77755 6667 7  999999999999 76 899999999999999987         55554443             


Q ss_pred             cCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC-cceeecccccCCCCCCceeecccccceeeeeeeecCCcc
Q 017194          200 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK  278 (375)
Q Consensus       200 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~  278 (375)
                       +...+.+++|+|      ++  +++++.|+.|++||+++ ....                                   
T Consensus       149 -~~~~v~~~~~~~------~~--l~~~~~d~~i~i~d~~~~~~~~-----------------------------------  184 (342)
T 1yfq_A          149 -VKNKIFTMDTNS------SR--LIVGMNNSQVQWFRLPLCEDDN-----------------------------------  184 (342)
T ss_dssp             -SCCCEEEEEECS------SE--EEEEESTTEEEEEESSCCTTCC-----------------------------------
T ss_pred             -eCCceEEEEecC------Cc--EEEEeCCCeEEEEECCcccccc-----------------------------------
Confidence             457899999987      44  99999999999999986 3211                                   


Q ss_pred             eeEeeeeecCCCccEEEEEEeecCC-CCcEEEEecCCCeEEEEeCCCc--eeeeecchhhhhhhhccc---------ccc
Q 017194          279 RLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRF--QGVQTSINNDLLIKNINL---------NKK  346 (375)
Q Consensus       279 ~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~---------~~~  346 (375)
                         .......|...+.+++|+   | +++++++++.||.|++|+++..  ...     ......+..|         ...
T Consensus       185 ---~~~~~~~~~~~i~~i~~~---~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  253 (342)
T 1yfq_A          185 ---GTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYN-----SSKRFAFRCHRLNLKDTNLAYP  253 (342)
T ss_dssp             ---CEEEECSCSSCEEEEEEC---SGGGCEEEEEETTSEEEEEECCTTCCSTT-----CTTCEEEECCCCCTTCCSSCCC
T ss_pred             ---ceeeecCCCCceeEEEEC---CCCCCEEEEEecCCcEEEEEEcCCCcccc-----cccceeeeccccccccccccee
Confidence               112344677899999999   9 9999999999999999999875  100     0223334445         449


Q ss_pred             eeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          347 VNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       347 v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |.+++|+| ++++|++++.||.|++||++
T Consensus       254 i~~~~~s~-~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          254 VNSIEFSP-RHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             EEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred             EEEEEEcC-CCCEEEEecCCceEEEEcCc
Confidence            99999999 99999999999999999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-35  Score=257.74  Aligned_cols=282  Identities=14%  Similarity=0.165  Sum_probs=232.7

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +++.+..+.+|.+.|.+++|+   +++|++|+.||+|++||+.+++.+..+.+|...|.++.|+  ++.+++++.|+.|+
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~  222 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR  222 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             CCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence            566778899999999999997   4599999999999999999999999999999999999996  56799999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +||+.+++.   +..+.+|...|.++.+  +++++++++.||.|++||+++++.+..+. +|...|.+++|  ++. .++
T Consensus       223 ~wd~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~  293 (445)
T 2ovr_B          223 VWDIETGQC---LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGI-HVV  293 (445)
T ss_dssp             EEESSSCCE---EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSS-EEE
T ss_pred             EEECCCCcE---EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCC-EEE
Confidence            999987643   4455678899999999  77899999999999999999999999999 99999999999  565 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||+++++.+..+..             +...+.++.+        +++++++++.||.|++||+++++..
T Consensus       294 ~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~~v~~~~~--------~~~~l~~~~~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          294 SGSLDTSIRVWDVETGNCIHTLTG-------------HQSLTSGMEL--------KDNILVSGNADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC-------------CCSCEEEEEE--------ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEeCCCeEEEEECCCCCEEEEEcC-------------CcccEEEEEE--------eCCEEEEEeCCCeEEEEECCCCcEE
Confidence            999999999999999998887763             3567777777        4679999999999999999988766


Q ss_pred             eccccc--CCCCCCceeecccccceeee------eeeecCCcceeEeeeee--cCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          244 SRSKST--TKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       244 ~~~~~~--~~~~~~~~~~s~~g~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      ......  ....+.++++  ++.++++.      ..++.........+...  .+|...|.+++|+   |++.++++|+.
T Consensus       353 ~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~la~~~~  427 (445)
T 2ovr_B          353 QTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS---NTKLVCAVGSR  427 (445)
T ss_dssp             EEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC---SSEEEEEEECS
T ss_pred             EEEccCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEec---CCEEEEEEccc
Confidence            655442  3344555555  46666652      23444444333332221  4678899999999   99999999999


Q ss_pred             CCe----EEEEeCCCc
Q 017194          314 DKL----VKVWDCSRF  325 (375)
Q Consensus       314 dg~----i~iwd~~~~  325 (375)
                      ||+    |.+||+...
T Consensus       428 dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          428 NGTEETKLLVLDFDVD  443 (445)
T ss_dssp             SSSSCCEEEEEECCCC
T ss_pred             CCCCccEEEEEECCCC
Confidence            997    999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.8e-37  Score=266.39  Aligned_cols=263  Identities=14%  Similarity=0.171  Sum_probs=198.5

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc--------ccccccccCCC------------cceeEEEEcCCC-
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS--------WRPLESYNYNK------------EEINQIVCNPKS-  115 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~------------~~v~~~~~~~~~-  115 (375)
                      +.+.|.+++|+|++++|++|+.||.|++||+.+++.        ......+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            578999999999999999999999999999986542        12355667787            889999999998 


Q ss_pred             -CeEEEEeCCCcEEEEeCcCceee---------------------------------------eeEecCcccceeEEEEe
Q 017194          116 -SFLACADDGGDVKIIDIRQHCLY---------------------------------------KSLRAGHSSICSSVQFI  155 (375)
Q Consensus       116 -~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~~  155 (375)
                       .+|++++.|+.|++||+.+++..                                       ..+..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             78999999999999999764431                                       12222799999999999


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC-CEEEEEecCCcEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVD  233 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~l~~~~~dg~i~  233 (375)
                      |+++ +|+++ .|+.|++||+++ ++....+....      .....|...|.+++|+|      ++ ++|++++.||.|+
T Consensus       187 ~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~p------~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          187 SDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKP------ANMEELTEVITAAEFHP------NSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             TTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCC------SSGGGCCCCEEEEEECS------SCTTEEEEEETTSCEE
T ss_pred             CCCC-EEEEe-CCCeEEEEECCCCCceeeeeeccc------ccccccCcceEEEEECC------CCCcEEEEEeCCCeEE
Confidence            9998 78888 799999999984 44444332110      01112567899999999      67 9999999999999


Q ss_pred             EEeCCCcceee----cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194          234 VINIESELNIS----RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI  309 (375)
Q Consensus       234 i~d~~~~~~~~----~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~  309 (375)
                      +||++++....    ....+.                            .......+.+|...|.+++|+   |++++|+
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~v~~~~~s---~~g~~l~  301 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPE----------------------------DPSNRSFFSEIISSISDVKFS---HSGRYMM  301 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC---------------------------------CCHHHHHTTCEEEEEEC---TTSSEEE
T ss_pred             EEECcCCccccceeeEeccCC----------------------------CccccccccccCceEEEEEEC---CCCCEEE
Confidence            99999754210    000000                            000011222344599999999   9999999


Q ss_pred             EecCCCeEEEEeCCC-ceeeeecchhhhhhhhcccccc---------------eeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          310 SGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKK---------------VNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       310 s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +++. +.|++||+.. +         +.+..+.+|...               +..++|+| ++++|++++.||.|++||
T Consensus       302 ~~~~-~~v~iwd~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          302 TRDY-LSVKVWDLNMEN---------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFD  370 (447)
T ss_dssp             EEES-SEEEEEETTCCS---------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEE
T ss_pred             EeeC-CeEEEEeCCCCc---------cccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEE
Confidence            9999 9999999987 5         445555556432               33489999 999999999999999999


Q ss_pred             cC
Q 017194          374 IS  375 (375)
Q Consensus       374 ~~  375 (375)
                      +.
T Consensus       371 ~~  372 (447)
T 3dw8_B          371 RN  372 (447)
T ss_dssp             TT
T ss_pred             cC
Confidence            74

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=260.65  Aligned_cols=272  Identities=10%  Similarity=0.087  Sum_probs=204.9

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ..+.+++|...|.+++|+|+ |       .++.+.+|+.+.. ....+ .|...|.+++|+|+|+.||+++.||.|++||
T Consensus        44 ~~~~l~gh~~~v~~V~FsPd-g-------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd  113 (588)
T 2j04_A           44 YAKDINCNSKNLFHVKEFPL-E-------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFK  113 (588)
T ss_dssp             CCSCCSSBGGGTEEEEEECC-C-------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred             ccceecCCCccEEEEEECCC-C-------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Confidence            34556899999999999999 5       4566666654322 22233 4588999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCc-----ceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-------eeeEe---cCcccceeE
Q 017194           87 VHMPASWRPLESYNYNKE-----EINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-------YKSLR---AGHSSICSS  151 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~---~~~~~~v~~  151 (375)
                      .+.     .+..+. |..     .+.+++|+|||++|++|+.||+|++||+.+++.       +..+.   .+|...|.+
T Consensus       114 ~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s  187 (588)
T 2j04_A          114 DNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH  187 (588)
T ss_dssp             TTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred             CCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence            653     333344 444     599999999999999999999999999998752       56662   277889999


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCCCcc---eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPN---KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  228 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  228 (375)
                      ++|+|+|   +++++.|+.|++||+..++..   ..+..+            |...|.+++|+        ++.+++++ 
T Consensus       188 VawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~------------h~~~V~svaFs--------g~~LASa~-  243 (588)
T 2j04_A          188 IVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNA------------SRRKITDLKIV--------DYKVVLTC-  243 (588)
T ss_dssp             EEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECC------------CSSCCCCEEEE--------TTEEEEEC-
T ss_pred             EEEcCCc---EEEEeCCCeEEEEECCCCccccceeeeccc------------ccCcEEEEEEE--------CCEEEEEe-
Confidence            9999997   788899999999999887743   344323            46789999996        57888887 


Q ss_pred             CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEE--eecCCCCc
Q 017194          229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF--SMFGERGK  306 (375)
Q Consensus       229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~~~  306 (375)
                      ++.|++||+.+..                                        ......+|...|..++|  +   |++.
T Consensus       244 ~~tIkLWd~~~~~----------------------------------------~~~~~~gh~~~V~~va~~~s---~d~~  280 (588)
T 2j04_A          244 PGYVHKIDLKNYS----------------------------------------ISSLKTGSLENFHIIPLNHE---KEST  280 (588)
T ss_dssp             SSEEEEEETTTTE----------------------------------------EEEEECSCCSCCCEEEETTC---SSCE
T ss_pred             CCeEEEEECCCCe----------------------------------------EEEEEcCCCceEEEEEeeeC---CCCC
Confidence            6999999999742                                        11122278899999999  8   8999


Q ss_pred             EEEEecCCCeEEEEeCCCceeeee--------------cchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194          307 YLISGGNDKLVKVWDCSRFQGVQT--------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       307 ~l~s~~~dg~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      .|+++++||+ ++|..+.-.....              ......+..+ .+...|.+++++| ||+.+|+++
T Consensus       281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~-~~~~~I~~va~SP-dG~~lA~~~  349 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNY-ETTLVIHGISLSP-DGYSIAIVY  349 (588)
T ss_dssp             EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSS-CCEEEEEEEEECT-TSSEEEEEE
T ss_pred             EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeee-ccceEEEEEEECC-CCCEEEEEE
Confidence            9999999999 9998764321100              0000111122 2355699999999 999999886

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.1e-36  Score=259.22  Aligned_cols=285  Identities=15%  Similarity=0.133  Sum_probs=228.1

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceee-----EeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-----VTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      +..+..+ ..+.+++|+|+ +.++++++.++.|++||+.+++...     .+.+|...|.+++|+|+++.+++++.|+.|
T Consensus       116 ~~~~~~~-~~~~~~~~s~~-~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v  193 (433)
T 3bws_A          116 ISRFKTG-FQPKSVRFIDN-TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV  193 (433)
T ss_dssp             EEEEECS-SCBCCCEESSS-SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred             EEEEcCC-CCceEEEEeCC-CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence            3444444 44668999995 8899999999999999999998876     344688899999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ++||+++++..   ..+..|...+.+++|+|+++.++++ +.++.|++||+++++.+..+. . ...+.+++|+|+++ .
T Consensus       194 ~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~-~~~~~~~~~~~~g~-~  267 (433)
T 3bws_A          194 HVFDLKTLAYK---ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-K-IGLPRGLLLSKDGK-E  267 (433)
T ss_dssp             EEEETTTCCEE---EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-C-CSEEEEEEECTTSS-E
T ss_pred             EEEECCCceEE---EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-C-CCCceEEEEcCCCC-E
Confidence            99999876543   3344567889999999999988554 479999999999998888877 4 45699999999998 5


Q ss_pred             EEEee--------cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEecCCcE
Q 017194          162 VISGG--------LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVV  232 (375)
Q Consensus       162 l~~~~--------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i  232 (375)
                      +++++        .|+.|++||+++++....+..              ...+..++|+|      +++ ++++++.++.|
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~------~g~~l~~~~~~~~~v  327 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--------------PGNKRHIVSGN------TENKIYVSDMCCSKI  327 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--------------EECEEEEEECS------STTEEEEEETTTTEE
T ss_pred             EEEEECCCCccccCCCeEEEEECCCCcEEeeccC--------------CCCcceEEECC------CCCEEEEEecCCCEE
Confidence            77776        488999999999887776642              35788999999      676 55666899999


Q ss_pred             EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec
Q 017194          233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG  312 (375)
Q Consensus       233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~  312 (375)
                      ++||+.+++                                        ....+. +...+.+++|+   |+|++|++++
T Consensus       328 ~v~d~~~~~----------------------------------------~~~~~~-~~~~~~~~~~s---~dg~~l~~~~  363 (433)
T 3bws_A          328 EVYDLKEKK----------------------------------------VQKSIP-VFDKPNTIALS---PDGKYLYVSC  363 (433)
T ss_dssp             EEEETTTTE----------------------------------------EEEEEE-CSSSEEEEEEC---TTSSEEEEEE
T ss_pred             EEEECCCCc----------------------------------------EEEEec-CCCCCCeEEEc---CCCCEEEEEe
Confidence            999998642                                        122222 45678899999   8998888776


Q ss_pred             C---------------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC-CCeEEEEecC
Q 017194          313 N---------------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSIS  375 (375)
Q Consensus       313 ~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~iw~~~  375 (375)
                      .               ||.|++||+.+++.         +..+.. ...+.+++|+| ++++|++++. |+.|++|+++
T Consensus       364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~---------~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTV---------KEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CCCCCTTTCTTSCCSSCCEEEEEETTTTEE---------EEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred             cCCCccccccccccccceEEEEEECCCCcE---------EEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence            5               57999999998743         333333 45789999999 9999988774 9999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-35  Score=244.30  Aligned_cols=247  Identities=15%  Similarity=0.131  Sum_probs=211.7

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC---ceeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      +......+..|.+.|.+++|+|+ +++|++++.||.|++|++...   +....+..|...|.+++|  +++++++++.|+
T Consensus        48 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~  124 (313)
T 3odt_A           48 DQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDK  124 (313)
T ss_dssp             SSEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCC
Confidence            34456678899999999999998 899999999999999998754   557778889999999999  467999999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      .|++||.     ......+..|...+.++.|.| +++++++++.||.|++||  ..+....+...|...+.+++|+|++.
T Consensus       125 ~i~~~d~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~  197 (313)
T 3odt_A          125 TAKVWKE-----GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH  197 (313)
T ss_dssp             EEEEEET-----TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE
T ss_pred             CEEEEcC-----CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe
Confidence            9999992     244555667889999999988 899999999999999999  45666677723899999999999985


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                        +++++.|+.|++||+++++.+..+..             |...+.+++|+|      ++ .+++++.||.|++||+++
T Consensus       198 --~~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~~~------~~-~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          198 --FISCSNDGLIKLVDMHTGDVLRTYEG-------------HESFVYCIKLLP------NG-DIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             --EEEEETTSEEEEEETTTCCEEEEEEC-------------CSSCEEEEEECT------TS-CEEEEETTSEEEEECTTT
T ss_pred             --EEEccCCCeEEEEECCchhhhhhhhc-------------CCceEEEEEEec------CC-CEEEEecCCEEEEEECCC
Confidence              89999999999999999998888873             468899999999      56 689999999999999987


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      +                                        +....+..|...|.+++|+   |+++ +++++.||.|++
T Consensus       256 ~----------------------------------------~~~~~~~~~~~~i~~~~~~---~~~~-~~~~~~dg~i~i  291 (313)
T 3odt_A          256 G----------------------------------------SLKQVITLPAISIWSVDCM---SNGD-IIVGSSDNLVRI  291 (313)
T ss_dssp             C----------------------------------------CEEEEEECSSSCEEEEEEC---TTSC-EEEEETTSCEEE
T ss_pred             C----------------------------------------ceeEEEeccCceEEEEEEc---cCCC-EEEEeCCCcEEE
Confidence            4                                        3344667888899999999   8988 667899999999


Q ss_pred             EeCCCce
Q 017194          320 WDCSRFQ  326 (375)
Q Consensus       320 wd~~~~~  326 (375)
                      ||+++++
T Consensus       292 w~~~~~~  298 (313)
T 3odt_A          292 FSQEKSR  298 (313)
T ss_dssp             EESCGGG
T ss_pred             EeCCCCc
Confidence            9999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.1e-34  Score=248.78  Aligned_cols=266  Identities=13%  Similarity=0.101  Sum_probs=214.7

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI  106 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  106 (375)
                      +.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+   .. ...+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---~~-~~~v   76 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PA-GSSP   76 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---EC-SSSE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---EC-CCCc
Confidence            3578899999999999999999988888665 58999999999977 66778999999999876544333   32 3489


Q ss_pred             eEEEEcCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194          107 NQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  185 (375)
                      .+++|+|++++|+++ +.++.|++||+.+++.+..+. . ...+.+++|+|+++.++++++.++.|++||+++++....+
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-T-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-C-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            999999999987655 467999999999999988887 4 4578999999999854578888999999999999888877


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE-EEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI  264 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~  264 (375)
                      ..+              ..+..++|+|      +++.+ ++++.++.|++||+++++                       
T Consensus       155 ~~~--------------~~~~~~~~~~------dg~~l~~~~~~~~~v~~~d~~~~~-----------------------  191 (391)
T 1l0q_A          155 SVG--------------RSPKGIAVTP------DGTKVYVANFDSMSISVIDTVTNS-----------------------  191 (391)
T ss_dssp             ECC--------------SSEEEEEECT------TSSEEEEEETTTTEEEEEETTTTE-----------------------
T ss_pred             ecC--------------CCcceEEECC------CCCEEEEEeCCCCEEEEEECCCCe-----------------------
Confidence            643              5678999999      78777 567788999999998742                       


Q ss_pred             ceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec---CCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194          265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNI  341 (375)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  341 (375)
                                       ....+. +...+.+++|+   |++++|++++   .++.|++||+.+++         .+..+.
T Consensus       192 -----------------~~~~~~-~~~~~~~~~~~---~~g~~l~~~~~~~~~~~v~~~d~~~~~---------~~~~~~  241 (391)
T 1l0q_A          192 -----------------VIDTVK-VEAAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTNK---------ITARIP  241 (391)
T ss_dssp             -----------------EEEEEE-CSSEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTTE---------EEEEEE
T ss_pred             -----------------EEEEEe-cCCCccceEEC---CCCCEEEEEecCcCCCcEEEEECCCCe---------EEEEEe
Confidence                             112222 35578999999   9999998887   68999999999874         333344


Q ss_pred             ccccceeeeeecCCCCCcE-EEeeCCCeEEEEecC
Q 017194          342 NLNKKVNWLCTTPTESENL-VVCDTSKVVKVYSIS  375 (375)
Q Consensus       342 ~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~iw~~~  375 (375)
                      .|. .+.+++|+| ++++| ++++.|+.|++||++
T Consensus       242 ~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          242 VGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             CCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             cCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECC
Confidence            443 478899999 88877 677899999999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.7e-35  Score=237.33  Aligned_cols=297  Identities=10%  Similarity=0.071  Sum_probs=200.4

Q ss_pred             CCeeeecCCCc----eeEEEEecCCCC--EEEEeCCCCcEEEEecccC---ceeeEeeecCccEEEEEEeCCCCeEEEEc
Q 017194            7 KPRRLRGHKAT----ATCCIASRDRPG--FVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKSGNEDIIYVS   77 (375)
Q Consensus         7 ~~~~l~~h~~~----i~~~~~~~~~~~--~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~~   77 (375)
                      .+.+|+.-.+.    +.++.|-..+.+  .++++++ ..|++|+..++   +.+.+++.|+.+|..+.+.|+...|+...
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  105 (356)
T 2w18_A           27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA  105 (356)
T ss_dssp             EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred             eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence            34455544433    445555443221  5777776 58999999998   78999999999999999999766555443


Q ss_pred             CCC--eEEEEECCCCC---cccccccccCCCcceeEEEEcCCCCeEEEEe--CCCcEEEEeCc-CceeeeeEecCcccce
Q 017194           78 SGK--EVKSFDVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIR-QHCLYKSLRAGHSSIC  149 (375)
Q Consensus        78 ~d~--~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~-~~~~~~~~~~~~~~~v  149 (375)
                      -.+  .-.++-+.-..   .........+|...|..+   ++++++.+++  .|+.|++|++. +++.+..+. +|...+
T Consensus       106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v  181 (356)
T 2w18_A          106 LGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEE  181 (356)
T ss_dssp             ECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSS
T ss_pred             eccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCce
Confidence            221  11122221110   011111112233344443   4565555543  59999999994 588888888 899999


Q ss_pred             eEEEEee---CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE---
Q 017194          150 SSVQFIP---WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC---  223 (375)
Q Consensus       150 ~~~~~~~---~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l---  223 (375)
                      +.++|+|   +++ +|++++.|++|++||++++++++.+..+..          +...+.+++|+|      ++.++   
T Consensus       182 ~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~----------~v~~v~~vafSp------dG~~lvs~  244 (356)
T 2w18_A          182 TILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDS----------YQASVCHKAYSE------MGLLFIVL  244 (356)
T ss_dssp             CEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC-------------CCCEEEEEEE------TTEEEEEE
T ss_pred             eeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCc----------ceeeeEEEEECC------CCCEEEEe
Confidence            9999999   566 899999999999999999999999874300          123677889999      67766   


Q ss_pred             ---------EEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEE
Q 017194          224 ---------VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS  294 (375)
Q Consensus       224 ---------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  294 (375)
                               ++|+.|++|++||..+++.....                                   ......+|...+.
T Consensus       245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~-----------------------------------~~~~p~Gh~~~~l  289 (356)
T 2w18_A          245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVM-----------------------------------LYCLPPGQAGRFL  289 (356)
T ss_dssp             C------------CCEEEEEEETTTTEEEEEE-----------------------------------EECCCTTCCCCEE
T ss_pred             ccCCCcceeeccCCCcEEEEEECCCCEEEEEE-----------------------------------EeeccCCCcceeE
Confidence                     56778999999999875322100                                   0000135555544


Q ss_pred             EEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccccee-eeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          295 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-WLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       295 ~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +..     .++.++++++.|++|+|||+.++         +++..+.+|...+. .++|+| ||++|++|+.|++|+|||
T Consensus       290 sg~-----~sg~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          290 EGD-----VKDHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EEE-----EETTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEE
T ss_pred             ccc-----cCCCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEec
Confidence            333     34779999999999999999999         66677788887765 589999 999999999999999999


Q ss_pred             cC
Q 017194          374 IS  375 (375)
Q Consensus       374 ~~  375 (375)
                      +.
T Consensus       355 ~~  356 (356)
T 2w18_A          355 YS  356 (356)
T ss_dssp             EC
T ss_pred             CC
Confidence            74

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=246.72  Aligned_cols=259  Identities=14%  Similarity=0.133  Sum_probs=206.0

Q ss_pred             EecccCceeeEeeecCccEEEEEEeCC---CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEE
Q 017194           43 FDLRSKDVQLVTDVGNGPVTSLCFKSG---NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA  119 (375)
Q Consensus        43 w~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  119 (375)
                      |+....+.+..+.+|...|++++|+|+   |++|++++.|+.|++||+.+... .....+.+|...|.+++|+|++++|+
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEE
Confidence            345566677888899999999999999   59999999999999999986321 22245667899999999999999999


Q ss_pred             EEeCCCcEEEEeCcCceeeeeEecCcccceeEEEE--eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCC
Q 017194          120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF--IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG  197 (375)
Q Consensus       120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  197 (375)
                      +++.||.|++||+++++.+...  .|...|.+++|  +|++. +|++++.|+.|++||+++++.+..+...         
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------  170 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLP---------  170 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECS---------
T ss_pred             EEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecC---------
Confidence            9999999999999998877644  59999999999  78887 7999999999999999999999888744         


Q ss_pred             cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                           ..+.++.+.        ...+++++.++.+++|+++......                                 
T Consensus       171 -----~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~---------------------------------  204 (368)
T 3mmy_A          171 -----ERCYCADVI--------YPMAVVATAERGLIVYQLENQPSEF---------------------------------  204 (368)
T ss_dssp             -----SCEEEEEEE--------TTEEEEEEGGGCEEEEECSSSCEEE---------------------------------
T ss_pred             -----CCceEEEec--------CCeeEEEeCCCcEEEEEeccccchh---------------------------------
Confidence                 456666664        5588889999999999998642211                                 


Q ss_pred             ceeEeeeeecCCCccEEEEEEeecCCCCcE----EEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc--------
Q 017194          278 KRLHLDYSVGGHTAAASCVAFSMFGERGKY----LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--------  345 (375)
Q Consensus       278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------  345 (375)
                         ..  ....+...+..+.+.   ++...    +++++.||.|++|++......      ..+..+.+|..        
T Consensus       205 ---~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          205 ---RR--IESPLKHQHRCVAIF---KDKQNKPTGFALGSIEGRVAIHYINPPNPA------KDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             ---EE--CCCSCSSCEEEEEEE---ECTTSCEEEEEEEETTSEEEEEESSCSCHH------HHSEEEECSEEC----CCC
T ss_pred             ---hh--ccccccCCCceEEEc---ccCCCCCCeEEEecCCCcEEEEecCCCCcc------ccceeeeeeeccccccccc
Confidence               11  112233445566665   33333    999999999999999986321      22334444554        


Q ss_pred             ----ceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          346 ----KVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       346 ----~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                          .|.+++|+| ++++|++++.||.|++||++
T Consensus       271 ~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          271 QDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             EEECCEEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred             ccccceEEEEEec-CCCEEEEEccCCeEEEEECC
Confidence                799999999 99999999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=251.12  Aligned_cols=264  Identities=13%  Similarity=0.108  Sum_probs=210.1

Q ss_pred             eecCCCceeEEEEecCCCCEE-EEeCCCCcEEEEecc--cCceeeEee--ecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194           11 LRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLR--SKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~--~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      ..+|.+.|++++|+|+ +++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+|++++|++++.++.+++|
T Consensus        98 ~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             --CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            3467889999999999 7775 999999999999999  888888876  567899999999999999999999999999


Q ss_pred             ECCCCCccc-ccccccCCCcceeEEEEcCC---CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           86 DVHMPASWR-PLESYNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        86 d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ++.+++... ....+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+..+|...|.+++|+ ++. +
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~-~  254 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY-L  254 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT-E
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC-E
Confidence            998766544 45566778999999999999   99999999999999999999888777333899999999999 888 7


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCC--CC----------CCCCcccCCCceeEEeecCCccccCCCCEEEEEe-c
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPE--NN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-G  228 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~  228 (375)
                      |++++.|+.|++||+++++.+..+......  ..          ...........+..++++|      +++++++++ .
T Consensus       255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~------~~~~l~~~~~~  328 (450)
T 2vdu_B          255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK------NLPFVAFFVEA  328 (450)
T ss_dssp             EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS------SSSEEEEEETT
T ss_pred             EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC------CCCEEEEEECC
Confidence            999999999999999999988887632100  00          0000001235688999999      799999998 8


Q ss_pred             CCcEEEEeC--CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          229 DGVVDVINI--ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       229 dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                      ++.|++|++  .+                                     ...+..+..+..| ..|.+++|+   |++.
T Consensus       329 d~~i~iw~~~~~~-------------------------------------~~~l~~~~~~~~~-~~v~~~~~~---~~~~  367 (450)
T 2vdu_B          329 TKCIIILEMSEKQ-------------------------------------KGDLALKQIITFP-YNVISLSAH---NDEF  367 (450)
T ss_dssp             CSEEEEEEECSSS-------------------------------------TTCEEEEEEEECS-SCEEEEEEE---TTEE
T ss_pred             CCeEEEEEeccCC-------------------------------------CCceeeccEeccC-CceEEEEec---CCcE
Confidence            999999999  33                                     1223455567777 789999999   8654


Q ss_pred             EEEEecC------CCeEEEEeCCC
Q 017194          307 YLISGGN------DKLVKVWDCSR  324 (375)
Q Consensus       307 ~l~s~~~------dg~i~iwd~~~  324 (375)
                      ++++++.      ++.|.+|.+..
T Consensus       368 ~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          368 QVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEecccCCCCCCcceEEEEEEc
Confidence            4444443      45688887654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.3e-33  Score=242.04  Aligned_cols=252  Identities=10%  Similarity=0.075  Sum_probs=204.7

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEE-EEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCe
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKE   81 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~   81 (375)
                      +++.+..+.+|. .+.+++|+|+ +++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+++ +.++.
T Consensus        21 ~~~~~~~~~~~~-~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~   97 (391)
T 1l0q_A           21 SNKVTATIPVGS-NPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST   97 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCeEEEEeecCC-CcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence            455666777665 5899999999 6665 788899999999999999888887655 99999999999988654 46799


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeE-EEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      |++||+.+++....+.   . ...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. .+ ..+.+++|+|+++.
T Consensus        98 v~v~d~~~~~~~~~~~---~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~dg~~  171 (391)
T 1l0q_A           98 LSVIDTTSNTVAGTVK---T-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VG-RSPKGIAVTPDGTK  171 (391)
T ss_dssp             EEEEETTTTEEEEEEE---C-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSE
T ss_pred             EEEEECCCCeEEEEEe---C-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cC-CCcceEEECCCCCE
Confidence            9999999765443333   2 4578999999999977 677789999999999999988887 44 56799999999985


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe---cCCcEEEEeC
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINI  237 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~  237 (375)
                      ++++++.++.|++||+++++....+..              ...+.+++|+|      +++++++++   .++.|++||+
T Consensus       172 l~~~~~~~~~v~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~------~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          172 VYVANFDSMSISVIDTVTNSVIDTVKV--------------EAAPSGIAVNP------EGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC--------------SSEEEEEEECT------TSSEEEEEEECSSCCEEEEEET
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEec--------------CCCccceEECC------CCCEEEEEecCcCCCcEEEEEC
Confidence            557888899999999999888777763              36789999999      799888888   6899999999


Q ss_pred             CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEE-EEecCCCe
Q 017194          238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKL  316 (375)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l-~s~~~dg~  316 (375)
                      .+++                                        .+..+..|. .+.+++|+   |++++| ++++.|+.
T Consensus       232 ~~~~----------------------------------------~~~~~~~~~-~~~~~~~s---~dg~~l~~s~~~d~~  267 (391)
T 1l0q_A          232 GTNK----------------------------------------ITARIPVGP-DPAGIAVT---PDGKKVYVALSFXNT  267 (391)
T ss_dssp             TTTE----------------------------------------EEEEEECCS-SEEEEEEC---TTSSEEEEEETTTTE
T ss_pred             CCCe----------------------------------------EEEEEecCC-CccEEEEc---cCCCEEEEEcCCCCE
Confidence            8742                                        223444443 47889999   999877 67789999


Q ss_pred             EEEEeCCCceee
Q 017194          317 VKVWDCSRFQGV  328 (375)
Q Consensus       317 i~iwd~~~~~~~  328 (375)
                      |++||+.+++..
T Consensus       268 v~v~d~~~~~~~  279 (391)
T 1l0q_A          268 VSVIDTATNTIT  279 (391)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCcEE
Confidence            999999998544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.8e-34  Score=243.33  Aligned_cols=260  Identities=11%  Similarity=0.104  Sum_probs=183.6

Q ss_pred             EEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeE-EE
Q 017194           42 WFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL-AC  120 (375)
Q Consensus        42 iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~  120 (375)
                      ||++.+.+.+.....|...|.+++|+|+|++|++|+.+ .+++|++.+.+..   ....  ...+..+++.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHI---MSQE--MRHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEE---EEEE--CSCCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCccee---eeee--cCCeEEEEEcCCCCEEEEE
Confidence            56667777777788899999999999999999988866 5789998854322   1111  2357888899988887 56


Q ss_pred             EeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcc
Q 017194          121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQC  199 (375)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~  199 (375)
                      ++.|+.|++||+.+++.+..+.  +...|.+++++++.   ++++ .|+.|++||+.++ +.+..+..            
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~------------  138 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR------------  138 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE------------
T ss_pred             ECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc------------
Confidence            7788999999999999999887  67799999998863   4444 4789999999987 66555441            


Q ss_pred             cCCCceeEEeecCCccccCCCCEEEE--EecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          200 YNPAFVHAIAIPDADMLDKTNKICVV--AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       200 ~~~~~v~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                          ....+++++        ..+++  |+.+|.|++||+.++..........                         ..
T Consensus       139 ----~~~~~~~s~--------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~-------------------------~~  181 (355)
T 3vu4_A          139 ----FGGVCEFSN--------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV-------------------------QQ  181 (355)
T ss_dssp             ----EEEEEEEET--------TEEEEEESSCTTCEEEEECCC--------------------------------------
T ss_pred             ----CCceEEEEc--------cEEEEeCCCcCcEEEEEECCCCCccccccccc-------------------------cc
Confidence                233445543        44555  5889999999999753221100000                         00


Q ss_pred             ceeEe-eeeecCCCccEEEEEEeecCCCCcEEEEecCCCe-EEEEeCCCceeeeecchhhhhhhhc-c-cccceeeeeec
Q 017194          278 KRLHL-DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI-N-LNKKVNWLCTT  353 (375)
Q Consensus       278 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~  353 (375)
                      ..... +..+.+|...|.+++|+   |+|++|++|+.|++ |++||+.++         +.+..+. + |...|.+++|+
T Consensus       182 ~~~~p~~~~~~~h~~~v~~~~~s---~~g~~l~s~s~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          182 KAILGKGVLIKAHTNPIKMVRLN---RKSDMVATCSQDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             -----CCEEECCCSSCEEEEEEC---TTSSEEEEEETTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEEC
T ss_pred             cccCcccEEEEccCCceEEEEEC---CCCCEEEEEeCCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEEC
Confidence            01122 56788999999999999   99999999999998 999999998         4445555 5 99999999999


Q ss_pred             CCCCCcEEEeeCCCeEEEEecC
Q 017194          354 PTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       354 ~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      | ++++|++++.|+.|++|+++
T Consensus       250 ~-~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          250 T-DGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             T-TSCEEEEEETTCEEEEEESS
T ss_pred             C-CCCEEEEEECCCEEEEEEcc
Confidence            9 99999999999999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=243.69  Aligned_cols=230  Identities=8%  Similarity=0.036  Sum_probs=182.1

Q ss_pred             EEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc---------Cc
Q 017194           65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---------QH  135 (375)
Q Consensus        65 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~  135 (375)
                      .+.+++..+++|+.||.|++||+.+++....+.     ...|.++.++|+   +++++.|+.|++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            344678899999999999999999876554444     356888889888   9999999999999765         44


Q ss_pred             eeeeeEecCcccceeEEEEee--CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          136 CLYKSLRAGHSSICSSVQFIP--WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                      +.+..+..+|...|.+++|+|  +++ ++++++.||+|++||+++++........            +...+.+++|+| 
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------~~~~i~~~~~~p-  180 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAK------------SDVEYSSGVLHK-  180 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCC------------SSCCCCEEEECT-
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecC------------CCCceEEEEECC-
Confidence            445455436778999999999  888 7999999999999999998886555433            345799999999 


Q ss_pred             ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCcc
Q 017194          214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAA  292 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  292 (375)
                           ++.+|++|+.||.|++||++++...                                       ...+.. |..+
T Consensus       181 -----dg~~lasg~~dg~i~iwd~~~~~~~---------------------------------------~~~~~~~h~~~  216 (343)
T 3lrv_A          181 -----DSLLLALYSPDGILDVYNLSSPDQA---------------------------------------SSRFPVDEEAK  216 (343)
T ss_dssp             -----TSCEEEEECTTSCEEEEESSCTTSC---------------------------------------CEECCCCTTSC
T ss_pred             -----CCCEEEEEcCCCEEEEEECCCCCCC---------------------------------------ccEEeccCCCC
Confidence                 8999999999999999999975211                                       124555 8999


Q ss_pred             EEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc---cccccee--eeeecCCCCCcEEEeeC-C
Q 017194          293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI---NLNKKVN--WLCTTPTESENLVVCDT-S  366 (375)
Q Consensus       293 v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~--~~~~~~~~~~~l~s~~~-d  366 (375)
                      |.+++|+   |++.+|++++ |+.|++||+++.+         .+..+.   .|...+.  +++|+| ++++|++++. |
T Consensus       217 v~~l~fs---~~g~~l~s~~-~~~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d  282 (343)
T 3lrv_A          217 IKEVKFA---DNGYWMVVEC-DQTVVCFDLRKDV---------GTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNES  282 (343)
T ss_dssp             EEEEEEC---TTSSEEEEEE-SSBEEEEETTSST---------TCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTT
T ss_pred             EEEEEEe---CCCCEEEEEe-CCeEEEEEcCCCC---------cceeecccccccccccceEEEECC-CCCEEEEecCCC
Confidence            9999999   9999999999 4599999999873         322222   2334444  599999 9999999988 9


Q ss_pred             CeEEEEec
Q 017194          367 KVVKVYSI  374 (375)
Q Consensus       367 g~v~iw~~  374 (375)
                      +.|++|++
T Consensus       283 ~~i~v~~~  290 (343)
T 3lrv_A          283 NSLTIYKF  290 (343)
T ss_dssp             TEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.4e-34  Score=245.09  Aligned_cols=248  Identities=9%  Similarity=0.023  Sum_probs=171.6

Q ss_pred             EEecCCCCEEEEeCCCCcEEEEecccCcee-----eEeeecCccEEEEEEeC--------CCCeEEEEcCCCeEEEEECC
Q 017194           22 IASRDRPGFVASSGEDGCICWFDLRSKDVQ-----LVTDVGNGPVTSLCFKS--------GNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~l~~~~--------~~~~l~~~~~d~~i~iwd~~   88 (375)
                      .+.++ +.+||+++.|++|+|||.++++..     ..+.+|.+.|++++|+|        ++++|++++.|++|++||+.
T Consensus        96 ~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           96 SSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             -CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             ecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence            33444 678999999999999999887653     34678999999999998        78999999999999999998


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeee-------------------------Ee
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKS-------------------------LR  142 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------~~  142 (375)
                      ++..   +.....|..++.+++|+|++ .+|++++.|++|++||+++++....                         ..
T Consensus       175 ~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          175 DEGP---ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             TTEE---EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             CCce---eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            6533   33344567899999999987 4799999999999999987654322                         12


Q ss_pred             cCcccceeEEEEe-eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCC-----CCcccCCCceeEEeecCCccc
Q 017194          143 AGHSSICSSVQFI-PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN-----AGQCYNPAFVHAIAIPDADML  216 (375)
Q Consensus       143 ~~~~~~v~~~~~~-~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~  216 (375)
                       +|...+.++.|. |++. .+++++.|+++++||+..++....+..........     ..............+.|    
T Consensus       252 -~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  325 (393)
T 4gq1_A          252 -GIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----  325 (393)
T ss_dssp             -CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----
T ss_pred             -cccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----
Confidence             577788999987 6777 79999999999999998877655544221000000     00000001111222333    


Q ss_pred             cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194          217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV  296 (375)
Q Consensus       217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  296 (375)
                      ..++.++++|+.||.|++||+.++.                                        ....+.+|..+|.++
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~----------------------------------------~~~~~~~~~~~V~sv  365 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKD----------------------------------------SNSIPIQLGMPIVDF  365 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTT----------------------------------------CCEEEEECSSCEEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCc----------------------------------------EEEEecCCCCcEEEE
Confidence            2245577788899999999998752                                        222445678899999


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                      +|+   |||++||+++.|| +.+|.+.
T Consensus       366 afs---pdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          366 CWH---QDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEC---TTSSEEEEEESSE-EEEEEEG
T ss_pred             EEc---CCCCEEEEEeCCC-eEEEEEe
Confidence            999   9999999999776 6666554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=1.1e-31  Score=237.55  Aligned_cols=325  Identities=10%  Similarity=0.061  Sum_probs=241.2

Q ss_pred             EEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC--CCCCcccccccc
Q 017194           22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV--HMPASWRPLESY   99 (375)
Q Consensus        22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~   99 (375)
                      .++|+ +.++++++.|++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|++||+  .+++....   +
T Consensus       144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~---i  218 (543)
T 1nir_A          144 DLDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE---I  218 (543)
T ss_dssp             CCCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE---E
T ss_pred             ccCCC-CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE---E
Confidence            48888 78999999999999999999999999884433 889999999999999999999999999  66544333   3


Q ss_pred             cCCCcceeEEEEcC----CCCeEEEEe-CCCcEEEEeCcCceeeeeEecCc-----------ccceeEEEEeeCCCcEEE
Q 017194          100 NYNKEEINQIVCNP----KSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGH-----------SSICSSVQFIPWKPWEVI  163 (375)
Q Consensus       100 ~~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~  163 (375)
                      . +...+..++|+|    +++++++++ .+++|.+||..+++++..+. .+           ...+.++.++|+++.+++
T Consensus       219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~-~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          219 K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec-ccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            3 245679999999    999999888 48999999999999988886 32           226889999999886788


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcce
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELN  242 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  242 (375)
                      +...++.|.+||+.+.+.+......            +...+..++|+|      +++++++++ .++.|.+||+.+++.
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i~------------~~~~~~~~~~sp------dg~~l~va~~~~~~v~v~D~~tg~l  358 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSIG------------AAPFLHDGGWDS------SHRYFMTAANNSNKVAVIDSKDRRL  358 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEEE------------CCSSCCCEEECT------TSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EECCCCeEEEEEecCCCcceeEEec------------cCcCccCceECC------CCCEEEEEecCCCeEEEEECCCCeE
Confidence            8889999999999987766522222            235678899999      799776554 689999999999876


Q ss_pred             eecccccCCCCC-Ccee-eccc-ccceeee-------eeeecCCc----ceeEeeeeecCCCccEEEEEEeecCCCCcEE
Q 017194          243 ISRSKSTTKPLK-GSQS-TSKV-NIRDAEM-------EILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYL  308 (375)
Q Consensus       243 ~~~~~~~~~~~~-~~~~-~s~~-g~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l  308 (375)
                      .........+.. .... ++|+ |..+++.       ..++....    ..++++.++.+|...+..++++   |++++|
T Consensus       359 ~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~---pdg~~l  435 (543)
T 1nir_A          359 SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH---PKSSHL  435 (543)
T ss_dssp             EEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC---TTCCEE
T ss_pred             EEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC---CCCCcE
Confidence            655442211111 1222 4676 4444432       12222221    1267788899998888999999   999999


Q ss_pred             EEec-------CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe-----eCCCeEEEEecC
Q 017194          309 ISGG-------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-----DTSKVVKVYSIS  375 (375)
Q Consensus       309 ~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-----~~dg~v~iw~~~  375 (375)
                      ++++       .+++|.+||+.+.+.....-.-.....+..+...+..++|+| +|+.|+++     +.|+.|.|||.+
T Consensus       436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECC
Confidence            9987       277999999998843210000000011245678899999999 89888865     247999999963

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.2e-31  Score=232.97  Aligned_cols=244  Identities=13%  Similarity=0.105  Sum_probs=204.3

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVH   88 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~   88 (375)
                      .+.+|.+.|.+++|+|+ ++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++ ++.++.|++||++
T Consensus       164 ~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          164 KYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             HHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            45689999999999998 899999999999999999999999999889999999999999998854 4578999999998


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEe--------CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACAD--------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      +++....+   .. ...+.+++|+|+++++++++        .|+.|++||+.+++.+..+.  |...+.+++|+|+++.
T Consensus       243 ~~~~~~~~---~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~  316 (433)
T 3bws_A          243 TKLEIRKT---DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENK  316 (433)
T ss_dssp             TTEEEEEC---CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTE
T ss_pred             CCcEEEEe---cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCE
Confidence            76543333   22 35699999999999999888        48899999999998877765  6678999999999986


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec------------
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------------  228 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~------------  228 (375)
                      ++++++.++.|++||+.+++....+..              ...+.+++|+|      +++++++++.            
T Consensus       317 l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------~~~~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          317 IYVSDMCCSKIEVYDLKEKKVQKSIPV--------------FDKPNTIALSP------DGKYLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC--------------SSSEEEEEECT------TSSEEEEEECCCCCTTTCTTSC
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEecC--------------CCCCCeEEEcC------CCCEEEEEecCCCccccccccc
Confidence            678889999999999999888877763              46789999999      7998888876            


Q ss_pred             ---CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194          229 ---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  305 (375)
Q Consensus       229 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  305 (375)
                         ||.|++||+.+++                                        .+..+.. ...+.+++|+   |+|
T Consensus       377 g~~dg~v~~~d~~~~~----------------------------------------~~~~~~~-~~~~~~~~~s---~dg  412 (433)
T 3bws_A          377 GLVLGKVYVIDTTTDT----------------------------------------VKEFWEA-GNQPTGLDVS---PDN  412 (433)
T ss_dssp             CSSCCEEEEEETTTTE----------------------------------------EEEEEEC-SSSEEEEEEC---TTS
T ss_pred             cccceEEEEEECCCCc----------------------------------------EEEEecC-CCCCceEEEc---CCC
Confidence               5799999998742                                        2223333 3568999999   999


Q ss_pred             cEEEEec-CCCeEEEEeCCC
Q 017194          306 KYLISGG-NDKLVKVWDCSR  324 (375)
Q Consensus       306 ~~l~s~~-~dg~i~iwd~~~  324 (375)
                      ++|++++ .|+.|++|+++.
T Consensus       413 ~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          413 RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CEEEEEETTTTEEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEecC
Confidence            9998776 499999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.9e-31  Score=215.06  Aligned_cols=252  Identities=11%  Similarity=0.011  Sum_probs=175.5

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCC---cEEEEecccC----ceeeEeeecCccEEEEEEeCCCCeEEEEc-
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDG---CICWFDLRSK----DVQLVTDVGNGPVTSLCFKSGNEDIIYVS-   77 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-   77 (375)
                      +++.++++|+.+|..+.+.||..+++..+-.+=   .|+..-+...    .....-.+|...|..+   ++++.+.+++ 
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~  153 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGT  153 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEeccc
Confidence            678899999999999999997555544442221   1111111111    1112223344445444   5666555543 


Q ss_pred             -CCCeEEEEECCCCCcccccccccCCCcceeEEEEcC---CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc---ccee
Q 017194           78 -SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP---KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS---SICS  150 (375)
Q Consensus        78 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~  150 (375)
                       .|+.|++|++...  .+.+..+.+|...+..++|++   ++.+|++++.|++|++||+++++.++++. +|.   ..+.
T Consensus       154 g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~-g~~~~v~~v~  230 (356)
T 2w18_A          154 LSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH-IDDSYQASVC  230 (356)
T ss_dssp             STTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE-CCC---CCCE
T ss_pred             CCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc-CCCcceeeeE
Confidence             5899999999542  234445556788899999999   77999999999999999999999999998 654   3677


Q ss_pred             EEEEeeCCCcEE------------EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccC
Q 017194          151 SVQFIPWKPWEV------------ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK  218 (375)
Q Consensus       151 ~~~~~~~~~~~l------------~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  218 (375)
                      +++|+|++. ++            ++|+.|++|++||..+++.+..+....|+.        |.....+..+        
T Consensus       231 ~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~G--------h~~~~lsg~~--------  293 (356)
T 2w18_A          231 HKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPG--------QAGRFLEGDV--------  293 (356)
T ss_dssp             EEEEEETTE-EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTT--------CCCCEEEEEE--------
T ss_pred             EEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCC--------CcceeEcccc--------
Confidence            889999997 44            678899999999999998877654321110        1122222222        


Q ss_pred             CCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEE-EEE
Q 017194          219 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS-CVA  297 (375)
Q Consensus       219 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~  297 (375)
                      ++.++++++.|++|+|||+.++                                        +++.++.+|...+. .++
T Consensus       294 sg~~lASgS~DgTIkIWDl~tG----------------------------------------k~l~tL~gH~~~vvs~va  333 (356)
T 2w18_A          294 KDHCAAAILTSGTIAIWDLLLG----------------------------------------QCTALLPPVSDQHWSFVK  333 (356)
T ss_dssp             ETTEEEEEETTSCEEEEETTTC----------------------------------------SEEEEECCC--CCCCEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCC----------------------------------------cEEEEecCCCCCeEEEEE
Confidence            4778999999999999999985                                        45567888877655 589


Q ss_pred             EeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          298 FSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                      |+   |||++|++|+.|++|+|||+.
T Consensus       334 fS---PDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          334 WS---GTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EC---SSSSEEEEECTTSCEEEEEEC
T ss_pred             EC---CCCCEEEEEECCCcEEEecCC
Confidence            99   999999999999999999963

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=100.00  E-value=1.9e-31  Score=229.26  Aligned_cols=279  Identities=12%  Similarity=0.032  Sum_probs=213.9

Q ss_pred             CCceeEEEEecCCCCEEEEeC----CCC----cEEEEec--ccCcee--eEeeecCccEEEEEEeC--------------
Q 017194           15 KATATCCIASRDRPGFVASSG----EDG----CICWFDL--RSKDVQ--LVTDVGNGPVTSLCFKS--------------   68 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~----~d~----~i~iw~~--~~~~~~--~~~~~~~~~v~~l~~~~--------------   68 (375)
                      ...+...+|.+.+.+++++|+    .+|    .++|||+  .+++.+  ..+.+|...+..+++++              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            346777889898667887876    567    8999999  888876  55788888888777764              


Q ss_pred             CCCeEEEEcCC------CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC---cEEEEeCcCceeee
Q 017194           69 GNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLYK  139 (375)
Q Consensus        69 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~  139 (375)
                      .+..++.++.+      +.|++||+...    ....+..|...+.+++|+|++++|++++.++   .|++||+++++.. 
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~----~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-  216 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-  216 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSC----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCC----CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-
Confidence            15566666654      79999999743    2334445678999999999999999999875   9999999988775 


Q ss_pred             eEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          140 SLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      .+. .|...+.+++|+|+|+.++++++.++  .|++||+++++. ..+. .            +...+.+++|+|     
T Consensus       217 ~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~------------~~~~~~~~~~sp-----  276 (415)
T 2hqs_A          217 QVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-D------------GRSNNTEPTWFP-----  276 (415)
T ss_dssp             EEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-C------------CSSCEEEEEECT-----
T ss_pred             Eee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-C------------CCCcccceEECC-----
Confidence            455 68889999999999984444676655  499999988765 3332 2            356789999999     


Q ss_pred             CCCCEEEEEec-CC--cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEE
Q 017194          218 KTNKICVVAKG-DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS  294 (375)
Q Consensus       218 ~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  294 (375)
                       +++.|++++. ++  .|.+||+.++.                                         ...+..+...+.
T Consensus       277 -dg~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------------~~~l~~~~~~~~  314 (415)
T 2hqs_A          277 -DSQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------------PQRITWEGSQNQ  314 (415)
T ss_dssp             -TSSEEEEEECTTSSCEEEEEETTSSC-----------------------------------------CEECCCSSSEEE
T ss_pred             -CCCEEEEEECCCCCcEEEEEECCCCC-----------------------------------------EEEEecCCCccc
Confidence             8998888876 44  67777887642                                         113444567888


Q ss_pred             EEEEeecCCCCcEEEEecCC---CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCC---e
Q 017194          295 CVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---V  368 (375)
Q Consensus       295 ~~~~s~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~  368 (375)
                      .++|+   |+|++|++++.+   ..|++||+.+++         . ..+..+. .+..++|+| +|++|++++.|+   .
T Consensus       315 ~~~~s---pdG~~l~~~~~~~g~~~i~~~d~~~~~---------~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          315 DADVS---SDGKFMVMVSSNGGQQHIAKQDLATGG---------V-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSV  379 (415)
T ss_dssp             EEEEC---TTSSEEEEEEECSSCEEEEEEETTTCC---------E-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEE
T ss_pred             CeEEC---CCCCEEEEEECcCCceEEEEEECCCCC---------E-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccE
Confidence            99999   999999988764   589999999873         2 2233443 889999999 999999988776   7


Q ss_pred             EEEEecC
Q 017194          369 VKVYSIS  375 (375)
Q Consensus       369 v~iw~~~  375 (375)
                      |++|++.
T Consensus       380 l~~~d~~  386 (415)
T 2hqs_A          380 LNLVSTD  386 (415)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=2.7e-30  Score=222.14  Aligned_cols=269  Identities=10%  Similarity=0.081  Sum_probs=206.8

Q ss_pred             cCCCCC--eeeecCCCceeEEEEecCC-------------CCEEEEeCCC------CcEEEEecccCceeeEeeecCccE
Q 017194            3 DAEAKP--RRLRGHKATATCCIASRDR-------------PGFVASSGED------GCICWFDLRSKDVQLVTDVGNGPV   61 (375)
Q Consensus         3 ~~~~~~--~~l~~h~~~i~~~~~~~~~-------------~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~v   61 (375)
                      .+++.+  ..+.+|...+..+++.+.+             +..++.++.+      +.|++||+. +.....+..|...+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v  181 (415)
T 2hqs_A          103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPL  181 (415)
T ss_dssp             STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCE
T ss_pred             CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcc
Confidence            344554  4588898888888777510             3455555443      799999997 45567788899999


Q ss_pred             EEEEEeCCCCeEEEEcCCC---eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEE-EEeCCCc--EEEEeCcCc
Q 017194           62 TSLCFKSGNEDIIYVSSGK---EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGD--VKIIDIRQH  135 (375)
Q Consensus        62 ~~l~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~  135 (375)
                      .+++|+|+|++|++++.++   .|++||+.+++..    .+..|...+.+++|+|+++.|+ +++.++.  |++||+.++
T Consensus       182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            9999999999999999875   9999999976542    2334567899999999999888 6665554  999999887


Q ss_pred             eeeeeEecCcccceeEEEEeeCCCcEEEEeec-CC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194          136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      +. ..+. .|...+.+++|+|+|+ .|++++. ++  .|++||+.+++.. .+..             +...+.+++|+|
T Consensus       258 ~~-~~l~-~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~-------------~~~~~~~~~~sp  320 (415)
T 2hqs_A          258 QI-RQVT-DGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAPQ-RITW-------------EGSQNQDADVSS  320 (415)
T ss_dssp             CE-EECC-CCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCCE-ECCC-------------SSSEEEEEEECT
T ss_pred             CE-EeCc-CCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCCEE-EEec-------------CCCcccCeEECC
Confidence            76 4566 6888999999999998 5666664 45  6888898877643 2221             246788999999


Q ss_pred             CccccCCCCEEEEEecC---CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194          213 ADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH  289 (375)
Q Consensus       213 ~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
                            ++++|++++.+   ..|++||+.+++.                                         ..+..+
T Consensus       321 ------dG~~l~~~~~~~g~~~i~~~d~~~~~~-----------------------------------------~~l~~~  353 (415)
T 2hqs_A          321 ------DGKFMVMVSSNGGQQHIAKQDLATGGV-----------------------------------------QVLSST  353 (415)
T ss_dssp             ------TSSEEEEEEECSSCEEEEEEETTTCCE-----------------------------------------EECCCS
T ss_pred             ------CCCEEEEEECcCCceEEEEEECCCCCE-----------------------------------------EEecCC
Confidence                  89999888764   5899999987421                                         134444


Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCC---eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  354 (375)
                      . .+.+++|+   |+|++|++++.|+   .|++||+...          ....+..|.+.|.+++|+|
T Consensus       354 ~-~~~~~~~s---pdg~~l~~~s~~~~~~~l~~~d~~g~----------~~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          354 F-LDETPSLA---PNGTMVIYSSSQGMGSVLNLVSTDGR----------FKARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             S-SCEEEEEC---TTSSEEEEEEEETTEEEEEEEETTSC----------CEEECCCSSSEEEEEEECC
T ss_pred             C-CcCCeEEc---CCCCEEEEEEcCCCccEEEEEECCCC----------cEEEeeCCCCCCcCCcccc
Confidence            3 78999999   9999999988877   8999999864          3456788999999999999

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=6.1e-29  Score=230.25  Aligned_cols=320  Identities=9%  Similarity=0.047  Sum_probs=227.5

Q ss_pred             CCceeEEEEecCCCCEEEEeCC-CC-----cEEEEecccCceeeEeeecCc------------------------cEEEE
Q 017194           15 KATATCCIASRDRPGFVASSGE-DG-----CICWFDLRSKDVQLVTDVGNG------------------------PVTSL   64 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~-d~-----~i~iw~~~~~~~~~~~~~~~~------------------------~v~~l   64 (375)
                      ...|.+++|+|| |++|++++. |+     .|++||+.+++....+..+..                        .|.++
T Consensus        36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            456999999999 899999888 88     899999999987766655432                        37899


Q ss_pred             EEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC
Q 017194           65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG  144 (375)
Q Consensus        65 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  144 (375)
                      +|+|||++|++++. +.|++||+.++.. .....+..|...+..++|+|||++|+.++. +.|++||+.+++...... .
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~-~  190 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA-D  190 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC-C
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc-C
Confidence            99999999999886 9999999987620 022234445678999999999999999874 689999999887665444 3


Q ss_pred             cccc----------------eeEEEEeeCCCcEEEEeecCC---------------------------------eEEEee
Q 017194          145 HSSI----------------CSSVQFIPWKPWEVISGGLDS---------------------------------KLVMWD  175 (375)
Q Consensus       145 ~~~~----------------v~~~~~~~~~~~~l~~~~~d~---------------------------------~i~~wd  175 (375)
                      +...                +.+++|+|+|+ .|++++.|+                                 .|++||
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            3322                47899999999 577776655                                 788999


Q ss_pred             CCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-----CCcEEEEeCCCcceeeccccc
Q 017194          176 FSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-----DGVVDVINIESELNISRSKST  249 (375)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~  249 (375)
                      +.+ ++........           .+...+..++| |      +++.|++++.     +..|++||+.+++........
T Consensus       270 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~-p------Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~  331 (741)
T 2ecf_A          270 PAEQAQTQWIDLGK-----------EQDIYLARVNW-R------DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET  331 (741)
T ss_dssp             SSTTCCCEEECCCS-----------CSSEEEEEEEE-E------ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCCceEEecCCC-----------CcceEEEEEEe-C------CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC
Confidence            987 7654332110           03467899999 9      7999887764     568999999987765544333


Q ss_pred             CCC---CCCceeecccccceeeee------eeecCCcceeEeeeeecCCCccEEEE-EEeecCCCCcEEE-EecCCC--e
Q 017194          250 TKP---LKGSQSTSKVNIRDAEME------ILDQSGGKRLHLDYSVGGHTAAASCV-AFSMFGERGKYLI-SGGNDK--L  316 (375)
Q Consensus       250 ~~~---~~~~~~~s~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~~~~l~-s~~~dg--~  316 (375)
                      ...   ....++|+|||+.++...      .+.....  .. ...+..|...+..+ .|+   |+|+.|+ +++.++  .
T Consensus       332 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~--~~-~~~l~~~~~~v~~~~~~s---~dg~~l~~~~~~~~~~~  405 (741)
T 2ecf_A          332 SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK--GK-AAALTHGNWSVDELLAVD---EKAGLAYFRAGIESARE  405 (741)
T ss_dssp             CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS--SC-EEESCCSSSCEEEEEEEE---TTTTEEEEEECSSCTTC
T ss_pred             CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC--CC-eeeeeecceEEEeEeEEe---CCCCEEEEEEeCCCCce
Confidence            222   346789999999555421      1111111  11 44666777788887 599   9998765 555555  8


Q ss_pred             EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC----CeEEEEec
Q 017194          317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----KVVKVYSI  374 (375)
Q Consensus       317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~v~iw~~  374 (375)
                      ++||++....        .....+.. ...+..++|+| |+++|+....+    ..+.+|+.
T Consensus       406 ~~l~~~~~~g--------~~~~~l~~-~~~~~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          406 SQIYAVPLQG--------GQPQRLSK-APGMHSASFAR-NASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             BEEEEEETTC--------CCCEECCC-SCSEEEEEECT-TSSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEEEEcCC--------CCeeeccc-CCCceEEEECC-CCCEEEEEecCCCCCCeEEEEEc
Confidence            9999986421        21222233 55678999999 89888776433    46777764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=1.3e-27  Score=200.06  Aligned_cols=292  Identities=10%  Similarity=0.054  Sum_probs=200.8

Q ss_pred             EEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-CCeEEEEECCCCCccccccccc
Q 017194           22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMPASWRPLESYN  100 (375)
Q Consensus        22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~  100 (375)
                      .|.++.+..+++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++..  .....
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--VVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--EEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--EEecc
Confidence            4566645668888999999999999999888887766777 9999999997776665 789999999876541  22333


Q ss_pred             CCCcceeEEEEcCCCCeEEEEeCCC---cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe-EEEeeC
Q 017194          101 YNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-LVMWDF  176 (375)
Q Consensus       101 ~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~~wd~  176 (375)
                      .+..+..+++|+|++++++++..++   .|.+||+.+++.+..+.  ......+++|+|++++++++...++. |.+|++
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            3344555599999999999655553   89999999999888887  34557999999999865666666688 999999


Q ss_pred             CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCC
Q 017194          177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKG  255 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  255 (375)
                      .....+......         .......+..++|+|      ++++++++ ..++.|.+||+.+++..            
T Consensus       159 ~~~g~~~~~~~~---------~~~~~~~~~~~~~sp------dg~~l~v~~~~~~~v~v~d~~~~~~~------------  211 (331)
T 3u4y_A          159 DADGVLFDTGQE---------FISGGTRPFNITFTP------DGNFAFVANLIGNSIGILETQNPENI------------  211 (331)
T ss_dssp             CTTCCEEEEEEE---------EECSSSSEEEEEECT------TSSEEEEEETTTTEEEEEECSSTTSC------------
T ss_pred             CCCCcEeecCCc---------cccCCCCccceEECC------CCCEEEEEeCCCCeEEEEECCCCccc------------
Confidence            865443222100         000234578999999      78866555 46889999999875320            


Q ss_pred             ceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe-cCCCeEEEEeCCCceeeeecchh
Q 017194          256 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINN  334 (375)
Q Consensus       256 ~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  334 (375)
                                               +.+..+.. ...+..++|+   |+|++|+.+ ..++.|.+||+.+++........
T Consensus       212 -------------------------~~~~~~~~-~~~~~~~~~s---pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~  262 (331)
T 3u4y_A          212 -------------------------TLLNAVGT-NNLPGTIVVS---RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG  262 (331)
T ss_dssp             -------------------------EEEEEEEC-SSCCCCEEEC---TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred             -------------------------ceeeeccC-CCCCceEEEC---CCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence                                     11223332 3556789999   999976655 45788999999987542100000


Q ss_pred             hhhhhhcccccceeeeeecCCCCCcEEEee-CCCeEEEEecC
Q 017194          335 DLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSIS  375 (375)
Q Consensus       335 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~~  375 (375)
                      ..+............++|+| ++++|++++ .++.|.+|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          263 HGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             CCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             cccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEEec
Confidence            00000011112235689999 888876655 56799999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.97  E-value=6.5e-29  Score=229.50  Aligned_cols=318  Identities=7%  Similarity=0.000  Sum_probs=220.6

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCc---cEEEEEEeCCCCeEEEEcCC---------CeEE
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG---PVTSLCFKSGNEDIIYVSSG---------KEVK   83 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~~~d---------~~i~   83 (375)
                      ..+.+++|+|| ++++++ +.||+|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.++
T Consensus        17 ~~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           17 IHDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            34678999999 787766 7899999999999998877776654   49999999999999998764         7889


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce--------------
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC--------------  149 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--------------  149 (375)
                      +||+.+++. ..+.....|...+..++|+|||+.|+.++. +.|++||+.+++...... .+...+              
T Consensus        95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTT
T ss_pred             EEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEe
Confidence            999998754 444444455566899999999999999876 799999999887766555 433333              


Q ss_pred             ----eEEEEeeCCCcEEEEeecCC----------------------------------eEEEeeCCCCCcceEEecCCCC
Q 017194          150 ----SSVQFIPWKPWEVISGGLDS----------------------------------KLVMWDFSKGRPNKIVNFGLPE  191 (375)
Q Consensus       150 ----~~~~~~~~~~~~l~~~~~d~----------------------------------~i~~wd~~~~~~~~~~~~~~~~  191 (375)
                          .+++|+|+|+ .|++++.++                                  .|++||+.+++....+..+   
T Consensus       172 ~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~---  247 (723)
T 1xfd_A          172 LKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP---  247 (723)
T ss_dssp             SSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC---
T ss_pred             ccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC---
Confidence                7899999999 677776442                                  7899999887755554321   


Q ss_pred             CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec----CCcEEEEeCCCcceeecccccCCCCC----Cceeecccc
Q 017194          192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESELNISRSKSTTKPLK----GSQSTSKVN  263 (375)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~s~~g  263 (375)
                          .....+...+..++|+|      ||+++++...    +..|++||+.+++.............    ..+.|+|||
T Consensus       248 ----~~~~~~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          248 ----DDPRMREYYITMVKWAT------STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             ----CCGGGSSEEEEEEEESS------SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS
T ss_pred             ----ccCCCccceeEEEEEeC------CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC
Confidence                00001245788999999      7998877653    35799999998765543322222222    478999999


Q ss_pred             cceeee-eeeec----------CC-cceeE--eeeeecCCCccEEE-EEEeecCCCCcEEEEecCC---CeEEEEeCCCc
Q 017194          264 IRDAEM-EILDQ----------SG-GKRLH--LDYSVGGHTAAASC-VAFSMFGERGKYLISGGND---KLVKVWDCSRF  325 (375)
Q Consensus       264 ~~~~~~-~~~~~----------~~-~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~~~~l~s~~~d---g~i~iwd~~~~  325 (375)
                      +.++.. ...+.          .+ .....  +...+..+...+.. ++|+   |||+.|+..+.+   +.++||++...
T Consensus       318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD---EKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE---TTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc---CCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            988864 22211          01 00000  02233333334444 6899   999998765544   78999998753


Q ss_pred             eeeeecchhhhhhhhcc---cccceeeeeecCCCCCcEEEe
Q 017194          326 QGVQTSINNDLLIKNIN---LNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~  363 (375)
                      ..       .....+..   |...+..++|+| +|++|+..
T Consensus       395 ~~-------~~~~~l~~~~~~~~~~~~~~~sp-dg~~l~~~  427 (723)
T 1xfd_A          395 GN-------FNRQCLSCDLVENCTYFSASFSH-SMDFFLLK  427 (723)
T ss_dssp             TT-------CCCBCSSTTSSSSCCCCEEEECT-TSSEEEEE
T ss_pred             CC-------CCcceecccccCCCCeEEEEECC-CCCEEEEE
Confidence            10       01112222   667788999999 88877764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.97  E-value=4e-28  Score=232.05  Aligned_cols=338  Identities=7%  Similarity=-0.021  Sum_probs=237.8

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCC------CcEEEEecccCceeeEeeecCccE-------EEEEEeCCCC
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGED------GCICWFDLRSKDVQLVTDVGNGPV-------TSLCFKSGNE   71 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~v-------~~l~~~~~~~   71 (375)
                      +...+.+.+|...+.+++|+|| |++||+++.+      ..|.+|++.+++ ...+..|...+       ..++|+|||+
T Consensus        42 gg~~~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~  119 (1045)
T 1k32_A           42 SGSTRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGN  119 (1045)
T ss_dssp             TCCEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCC
T ss_pred             CCcEEEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCE
Confidence            4556788999999999999999 8999977543      479999998776 56778888888       9999999999


Q ss_pred             eEEEEcCC------CeEEEEECCCCCcccc----------------------------------------------cccc
Q 017194           72 DIIYVSSG------KEVKSFDVHMPASWRP----------------------------------------------LESY   99 (375)
Q Consensus        72 ~l~~~~~d------~~i~iwd~~~~~~~~~----------------------------------------------~~~~   99 (375)
                      .+++++.+      ..|.+|++.++.....                                              ...+
T Consensus       120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l  199 (1045)
T 1k32_A          120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI  199 (1045)
T ss_dssp             EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred             EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence            66666644      3688888765432110                                              0112


Q ss_pred             cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      ..|...+.++.|+++ .++++++.++.+.+|.+.. +.....+. .|. .+..++|+|+|+ .++.+ .++.|++||+..
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGR-RILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSS-CEEEE-ETTEEEEECTTT
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCC-EEEEE-eCCEEEEecCCc
Confidence            345677888889888 5667777889999998753 44445555 444 467789999998 46666 589999999943


Q ss_pred             CCcceEEecCCCCCCCCCCcccCCCceeEEeec-CCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP-DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  257 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  257 (375)
                       ..+..+...  ..........+...+.+++|+ |      +++.|++++ ++.|.+|++.++.... ...........+
T Consensus       275 -~~l~~l~~~--~~~~~~~~~~~~~~v~~~~~S~p------dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~  343 (1045)
T 1k32_A          275 -EKIEKIEIG--DLESPEDRIISIPSKFAEDFSPL------DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRR  343 (1045)
T ss_dssp             -CCEEECCCC--CCCBCCSEEEECGGGGEEEEEEC------GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEE
T ss_pred             -eEeeeeccC--cccccccccccccccceeeecCC------CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEee
Confidence             333333211  000000001123468899999 9      799998887 7899999998765433 222222255678


Q ss_pred             eecccccceeeee----eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecch
Q 017194          258 STSKVNIRDAEME----ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN  333 (375)
Q Consensus       258 ~~s~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  333 (375)
                      +|+ ||+.+++..    .++....... ....+.+|...+..++|+   |||++|++++.++.|++||+.++        
T Consensus       344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~-~~~~l~~~~~~~~~~~~S---pDG~~la~~~~~~~v~~~d~~tg--------  410 (1045)
T 1k32_A          344 GGD-TKVAFIHGTREGDFLGIYDYRTG-KAEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETG--------  410 (1045)
T ss_dssp             CSS-SEEEEEEEETTEEEEEEEETTTC-CEEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTC--------
T ss_pred             eEc-CCCeEEEEECCCceEEEEECCCC-CceEecCCccceeeeEEC---CCCCEEEEECCCCeEEEEECCCC--------
Confidence            899 998887632    1101111111 112344777889999999   99999999999999999999987        


Q ss_pred             hhhhhhhcccccceeeeeecCCCCCcEEEeeCCC----------eEEEEecC
Q 017194          334 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK----------VVKVYSIS  375 (375)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----------~v~iw~~~  375 (375)
                       +......+|...+..++|+| ||++|++++.++          .|++||+.
T Consensus       411 -~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          411 -KPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             -CEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             -ceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence             33334447888999999999 999999887654          89999973

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=3.2e-27  Score=208.93  Aligned_cols=301  Identities=11%  Similarity=0.087  Sum_probs=217.9

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEec--ccCceeeEeeecCccEEEEEEeC----CCCeEEEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL--RSKDVQLVTDVGNGPVTSLCFKS----GNEDIIYV   76 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~--~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~   76 (375)
                      .+++.+.++..+.. +.+++|+|+ +++|++++.|++|.+||+  .+++.+..+.. ...+..++|+|    +|++++++
T Consensus       167 ~t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~  243 (543)
T 1nir_A          167 DSKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAG  243 (543)
T ss_dssp             TTCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEE
T ss_pred             CCceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEE
Confidence            35666777874333 889999999 899999999999999999  88888888874 55679999999    99999988


Q ss_pred             cC-CCeEEEEECCCCCccccccccc-------CC-CcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCceeee--eEecC
Q 017194           77 SS-GKEVKSFDVHMPASWRPLESYN-------YN-KEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYK--SLRAG  144 (375)
Q Consensus        77 ~~-d~~i~iwd~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~  144 (375)
                      +. +++|.+||..+.+....+....       .| ...+..+.++|++.. +++...++.|.+||+.+.+.+.  .+.  
T Consensus       244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--  321 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--  321 (543)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--
T ss_pred             EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--
Confidence            85 7999999998876655544311       02 237889999997665 5566688999999998766544  444  


Q ss_pred             cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194          145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       145 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      +...+.++.|+|+++++++++..+++|.+||+.+++++..+..+..         -|+.....+ ++|.     .+..++
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~---------ph~g~g~~~-~~p~-----~g~~~~  386 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT---------PHPGRGANF-VHPK-----YGPVWS  386 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS---------BCCTTCEEE-EETT-----TEEEEE
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC---------CCCCCCccc-CCCC-----CccEEE
Confidence            5667889999999996555666789999999999998888874310         022222233 3552     366666


Q ss_pred             EEe-cCCcEEEEeCCC-------cceeecccccCCCCCCceeecccccceeeee-------------eeecCCccee-Ee
Q 017194          225 VAK-GDGVVDVINIES-------ELNISRSKSTTKPLKGSQSTSKVNIRDAEME-------------ILDQSGGKRL-HL  282 (375)
Q Consensus       225 ~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-------------~~~~~~~~~~-~~  282 (375)
                      ++. .|++|.+||+.+       .+.......+ ......++++|+|+++++..             .++....... +.
T Consensus       387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~  465 (543)
T 1nir_A          387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  465 (543)
T ss_dssp             EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             eccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence            665 689999999987       4444333322 24457789999999988743             1222222211 11


Q ss_pred             ee-----eecCCCccEEEEEEeecCCCCcEEEEe-----cCCCeEEEEeCCCcee
Q 017194          283 DY-----SVGGHTAAASCVAFSMFGERGKYLISG-----GNDKLVKVWDCSRFQG  327 (375)
Q Consensus       283 ~~-----~~~~~~~~v~~~~~s~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~  327 (375)
                      +.     .+..+...+..++|+   |+|++++.+     +.|+.|.|||.++++.
T Consensus       466 ~~v~~~~~~~~~~~~~~~~~~~---~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          466 LPIAEWADLGEGAKRVVQPEYN---KRGDEVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             ECHHHHHCCCSSCCEEEEEEEC---SSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             eechhhcccCCCCCceEeccCC---CCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence            10     124567789999999   999998865     3479999999999854

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=4.7e-27  Score=197.51  Aligned_cols=277  Identities=13%  Similarity=0.093  Sum_probs=191.1

Q ss_pred             CEEEEeCCCCcEEEEecc-cCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCC-CeEEEEECC--CCCcccccccccCC
Q 017194           29 GFVASSGEDGCICWFDLR-SKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVH--MPASWRPLESYNYN  102 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~-~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-~~i~iwd~~--~~~~~~~~~~~~~~  102 (375)
                      .++++++.|+.|++|++. +++  .+.. ..+...+.+++|+|++++|++++.+ +.|.+|++.  +++ ...+..+..+
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~   83 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-LTFAAESALP   83 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEECS
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-eeeccccccC
Confidence            345555789999999995 332  2333 3467789999999999998888876 899999997  433 2333334333


Q ss_pred             CcceeEEEEcCCCCeEEEEeC-CCcEEEEeC---cCceeeeeEecCcccceeEEEEeeCCCcEEEEee-cCCeEEEeeCC
Q 017194          103 KEEINQIVCNPKSSFLACADD-GGDVKIIDI---RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDSKLVMWDFS  177 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~  177 (375)
                       ..+..++|+|++++|++++. ++.|.+||+   ...+.+..+.  ....+.+++|+|+++ .+++++ .++.|.+||+.
T Consensus        84 -~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           84 -GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNR-TLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             -SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEEC
T ss_pred             -CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCC-EEEEecCCCCEEEEEEec
Confidence             37899999999998877664 888999999   4445555555  334689999999998 455555 89999999998


Q ss_pred             C-CCcce----EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeecccccCC
Q 017194          178 K-GRPNK----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       178 ~-~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      + ++...    .+...            ....+..++|+|      +++++++++ .++.|.+|++.......       
T Consensus       160 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~p------dg~~l~~~~~~~~~i~~~~~~~~~g~~-------  214 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTV------------EGAGPRHMVFHP------NEQYAYCVNELNSSVDVWELKDPHGNI-------  214 (343)
T ss_dssp             TTSCEEEEEEEEEECS------------TTCCEEEEEECT------TSSEEEEEETTTTEEEEEESSCTTSCC-------
T ss_pred             CCCceeeecccccccC------------CCCCcceEEECC------CCCEEEEEeCCCCEEEEEEecCCCCcE-------
Confidence            7 54332    22221            234678899999      788766554 78999999996411000       


Q ss_pred             CCCCceeecccccceeeeeeeecCCcceeEeeeeecC---CCccEEEEEEeecCCCCcEEE-EecCCCeEEEEeCCC--c
Q 017194          252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSR--F  325 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~l~-s~~~dg~i~iwd~~~--~  325 (375)
                                                ........+..   ....+..++|+   |+|++|+ ++..++.|.+||+..  +
T Consensus       215 --------------------------~~~~~~~~~~~~~~~~~~~~~i~~s---~dg~~l~v~~~~~~~i~v~d~~~~~~  265 (343)
T 1ri6_A          215 --------------------------ECVQTLDMMPENFSDTRWAADIHIT---PDGRHLYACDRTASLITVFSVSEDGS  265 (343)
T ss_dssp             --------------------------EEEEEEECSCTTCCSCCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             --------------------------EEEeeccccCccccccCCccceEEC---CCCCEEEEEecCCCEEEEEEEcCCCC
Confidence                                      00011111111   13467789999   9998777 556799999999983  2


Q ss_pred             eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194          326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  374 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~  374 (375)
                      ..       +.+.....+.. +..++|+| ++++|++++ .|+.|.+|++
T Consensus       266 ~~-------~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          266 VL-------SKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CE-------EEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred             ce-------EEeeeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEE
Confidence            11       22222233333 88999999 899888877 6899999964

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=1.6e-27  Score=196.10  Aligned_cols=259  Identities=9%  Similarity=0.023  Sum_probs=188.9

Q ss_pred             EeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-CCcccccccccCCCcceeEEEE
Q 017194           33 SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVC  111 (375)
Q Consensus        33 s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~  111 (375)
                      .++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......  .+...+.+++|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~   92 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG--FATICNNDHGI   92 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT--TCCCBCSCCEE
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc--cccccccceEE
Confidence            4567899999999988765 4555889999999999999999887 88999999987 543322211  12467899999


Q ss_pred             cCCCCeEEEEe--CCCcEEEE--eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEe
Q 017194          112 NPKSSFLACAD--DGGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVN  186 (375)
Q Consensus       112 ~~~~~~l~~~~--~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~  186 (375)
                      +|++++|++++  .++...+|  ++.+++ ...+.  +...+..++|+|+++.+++++..++.+++|+++.. .....+.
T Consensus        93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  169 (297)
T 2ojh_A           93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT  169 (297)
T ss_dssp             CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence            99999999998  33445555  444444 34444  33458899999999854558889999999986432 2222222


Q ss_pred             cCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeecccccCCCCCCceeecccccc
Q 017194          187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR  265 (375)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  265 (375)
                       .            +...+.+++|+|      +++.+++++ .++.+++|++....                        
T Consensus       170 -~------------~~~~~~~~~~s~------dg~~l~~~~~~~~~~~i~~~~~~~------------------------  206 (297)
T 2ojh_A          170 -H------------GEGRNDGPDYSP------DGRWIYFNSSRTGQMQIWRVRVDG------------------------  206 (297)
T ss_dssp             -C------------SSSCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTS------------------------
T ss_pred             -c------------CCCccccceECC------CCCEEEEEecCCCCccEEEECCCC------------------------
Confidence             1            356789999999      788877666 58899999876210                        


Q ss_pred             eeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC-----------CeEEEEeCCCceeeeecchh
Q 017194          266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----------KLVKVWDCSRFQGVQTSINN  334 (375)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~  334 (375)
                                     .....+..|...+..++|+   |+|++|++++.+           +.|++||+.+++.       
T Consensus       207 ---------------~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------  261 (297)
T 2ojh_A          207 ---------------SSVERITDSAYGDWFPHPS---PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-------  261 (297)
T ss_dssp             ---------------SCEEECCCCSEEEEEEEEC---TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-------
T ss_pred             ---------------CCcEEEecCCcccCCeEEC---CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-------
Confidence                           1123455667788999999   999999988765           5699999988732       


Q ss_pred             hhhhhhcccccceeeeeecCCCCCcEEEeeCCC
Q 017194          335 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSK  367 (375)
Q Consensus       335 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  367 (375)
                      ..+....+|...+..++|+| ++++|++++.|.
T Consensus       262 ~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          262 ETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred             eeeeccCCCCcccccceECC-CCCEEEEEEecc
Confidence            11223446788899999999 999988887653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=4.1e-27  Score=197.38  Aligned_cols=267  Identities=8%  Similarity=0.026  Sum_probs=195.9

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCc--cEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCccccccccc--CCC
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG--PVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYN--YNK  103 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~  103 (375)
                      ++|++++.++.|.+||..+++.+..+.....  .+..++|+|++++++ ++..++.|.+||+.+++....+....  .+.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988887764332  578999999998765 45567899999998876544333211  012


Q ss_pred             cceeEEEEcCCCCeEEEEe------------CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194          104 EEINQIVCNPKSSFLACAD------------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                      ..+..++|+|++++++++.            .++.|.+||+.+++.+..+. . ...+.+++|+|+++ .++++  ++.|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~-~l~~~--~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-A-PRQITMLAWARDGS-KLYGL--GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-C-CSSCCCEEECTTSS-CEEEE--SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-C-CCCcceeEECCCCC-EEEEe--CCeE
Confidence            3678899999999998886            57999999999988888877 3 45688899999998 46665  6889


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---------------------
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---------------------  230 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---------------------  230 (375)
                      .+||+.+++....+..+.              ....+.++|      +++.+++.+..+                     
T Consensus       157 ~~~d~~~~~~~~~~~~~~--------------~~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQS--------------WEAETYAQP------DVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             EEEETTTTEEEEEECSTT--------------TTTTTBCCC------BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             EEEECCCCcEeeeeeccc--------------cCCCceeCC------CccEEeeeccCCCceeeeeeccccccccccccc
Confidence            999999988777665431              011225666      566554444322                     


Q ss_pred             ---cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194          231 ---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       231 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                         .|.+||+.+++..                                       ...+..+...+..++|+   |+|++
T Consensus       217 ~~~~v~~~d~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~s---~dg~~  254 (337)
T 1pby_B          217 YRTGLLTMDLETGEMA---------------------------------------MREVRIMDVFYFSTAVN---PAKTR  254 (337)
T ss_dssp             EEEEEEEEETTTCCEE---------------------------------------EEEEEECSSCEEEEEEC---TTSSE
T ss_pred             cccceEEEeCCCCCce---------------------------------------EeecCCCCCceeeEEEC---CCCCE
Confidence               3567777653211                                       12334455678899999   99999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          308 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       308 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++++  ++.|++||+.+++..         ..+. ....+.+++|+| ++++|++++.++.|++||++
T Consensus       255 l~~~--~~~v~~~d~~~~~~~---------~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          255 AFGA--YNVLESFDLEKNASI---------KRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEE--ESEEEEEETTTTEEE---------EEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETT
T ss_pred             EEEe--CCeEEEEECCCCcCc---------ceec-CCCceeeEEECC-CCCEEEEEcCCCcEEEEECc
Confidence            9988  799999999987432         2222 234678899999 99999999999999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=6.9e-26  Score=191.23  Aligned_cols=278  Identities=10%  Similarity=0.059  Sum_probs=205.5

Q ss_pred             CCCceeEEEEecCCCCEEEEeCC-------CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEE
Q 017194           14 HKATATCCIASRDRPGFVASSGE-------DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSF   85 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~-------d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iw   85 (375)
                      ....+..++|+|+ ++.+++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+|
T Consensus        39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            3456889999999 677766653       56899999999998888875 4457889999999965554 557899999


Q ss_pred             ECCCCCcccccccccCC------CcceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194           86 DVHMPASWRPLESYNYN------KEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW  157 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (375)
                      |..+++....+......      ...+.+++|+|+++++++++  .++.|.+||+.+++.+..+. .+...+.+++|+|+
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSE  195 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCC
Confidence            99987654444321110      01268899999999887776  47889999999999888887 56667899999999


Q ss_pred             CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEe
Q 017194          158 KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVIN  236 (375)
Q Consensus       158 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d  236 (375)
                      ++ .+++++.++.|.+||+.+++....+.....         .+...+..++++|      +++.+++++. ++.|.+||
T Consensus       196 g~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~------dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          196 GK-RLYTTNADGELITIDTADNKILSRKKLLDD---------GKEHFFINISLDT------ARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             TT-EEEEECTTSEEEEEETTTTEEEEEEECCCS---------SSCCCEEEEEEET------TTTEEEEEESSSSEEEEEE
T ss_pred             CC-EEEEEcCCCeEEEEECCCCeEEEEEEcCCC---------CCCcccceEEECC------CCCEEEEEeCCCCEEEEEE
Confidence            98 688888899999999999988887775310         0234577899999      7887776665 58999999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE-EecCCC
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDK  315 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~-s~~~dg  315 (375)
                      +.+++..                                        ..+....  ...++|+   |+|++++ +...++
T Consensus       260 ~~~~~~~----------------------------------------~~~~~~~--~~~~~~s---~dg~~l~v~~~~~~  294 (353)
T 3vgz_A          260 TRNGNIL----------------------------------------AKVAAPE--SLAVLFN---PARNEAYVTHRQAG  294 (353)
T ss_dssp             TTTCCEE----------------------------------------EEEECSS--CCCEEEE---TTTTEEEEEETTTT
T ss_pred             CCCCcEE----------------------------------------EEEEcCC--CceEEEC---CCCCEEEEEECCCC
Confidence            9875322                                        1111111  1468899   8998555 455799


Q ss_pred             eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC
Q 017194          316 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       316 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                      .|.+||..+++.         +..+. ....+..++|+| ++++|+.+..+
T Consensus       295 ~v~~~d~~~~~~---------~~~~~-~~~~~~~~~~s~-dg~~l~v~~~~  334 (353)
T 3vgz_A          295 KVSVIDAKSYKV---------VKTFD-TPTHPNSLALSA-DGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEETTTTEE---------EEEEE-CCSEEEEEEECT-TSCEEEEEEEC
T ss_pred             eEEEEECCCCeE---------EEEEe-cCCCCCeEEEcC-CCCEEEEEEcc
Confidence            999999998743         22222 234678999999 88877766544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.96  E-value=7.6e-27  Score=223.24  Aligned_cols=319  Identities=10%  Similarity=0.016  Sum_probs=234.7

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-----------cCccEEEEEEe-CCCCe
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-----------GNGPVTSLCFK-SGNED   72 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----------~~~~v~~l~~~-~~~~~   72 (375)
                      +...+.+..|. .+..++|+|+ ++.|+++ .++.|.+|++.... +..+..           |...+.+++|+ |+|+.
T Consensus       235 g~~~~~l~~~~-~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~  310 (1045)
T 1k32_A          235 GKDLRKHTSFT-DYYPRHLNTD-GRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL  310 (1045)
T ss_dssp             SCSCEECCCCC-SSCEEEEEES-SSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC
T ss_pred             CCcceEecCCC-CcceeeEcCC-CCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCE
Confidence            34456666665 4677899999 7888877 48899999985443 334443           34578999999 99999


Q ss_pred             EEEEcCCCeEEEEECCCCCcccccccccCCCc-ceeEEEEcCCCCeEEEEeCCCcEE-EEeCcCceeeeeEecCccccee
Q 017194           73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKE-EINQIVCNPKSSFLACADDGGDVK-IIDIRQHCLYKSLRAGHSSICS  150 (375)
Q Consensus        73 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~  150 (375)
                      |++++ ++.+.+|++.++...    .+..|.. .+..++|+ +++.|+.++.++.+. +||+.+++. ..+. +|...+.
T Consensus       311 la~~~-~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-~~l~-~~~~~~~  382 (1045)
T 1k32_A          311 IAFVS-RGQAFIQDVSGTYVL----KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-EKFE-ENLGNVF  382 (1045)
T ss_dssp             EEEEE-TTEEEEECTTSSBEE----ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-EECC-CCCCSEE
T ss_pred             EEEEE-cCEEEEEcCCCCceE----EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-eEec-CCcccee
Confidence            99888 889999998865422    2334556 89999999 999999998888888 999877654 3455 6788999


Q ss_pred             EEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          151 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      .++|+|+|+ .|++++.++.|++||+.+++...... .            +...+..++|+|      ++++|++++.++
T Consensus       383 ~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~-~------------~~~~v~~~~~Sp------DG~~la~~~~~~  442 (1045)
T 1k32_A          383 AMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIER-S------------REAMITDFTISD------NSRFIAYGFPLK  442 (1045)
T ss_dssp             EEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-C------------SSSCCCCEEECT------TSCEEEEEEEEC
T ss_pred             eeEECCCCC-EEEEECCCCeEEEEECCCCceEEecc-C------------CCCCccceEECC------CCCeEEEEecCc
Confidence            999999999 79999999999999999888766654 2            356788999999      899998887654


Q ss_pred             ----------cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeee------eecCCc-------ce--------
Q 017194          231 ----------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------LDQSGG-------KR--------  279 (375)
Q Consensus       231 ----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~------~~~~~~-------~~--------  279 (375)
                                .|++||+.+++.. ... ........+.|+|||+.+++...      ++....       ..        
T Consensus       443 ~~~~~~~~~~~i~l~d~~~g~~~-~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (1045)
T 1k32_A          443 HGETDGYVMQAIHVYDMEGRKIF-AAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP  520 (1045)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEE-ECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred             cccccCCCCCeEEEEECCCCcEE-Eee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCC
Confidence                      8999999987622 222 22334556789999998876332      100000       00        


Q ss_pred             -------------------------eEeeeeecCCCccEEEEEEeecCCCCcEEEE-------------ecCCCeEEEEe
Q 017194          280 -------------------------LHLDYSVGGHTAAASCVAFSMFGERGKYLIS-------------GGNDKLVKVWD  321 (375)
Q Consensus       280 -------------------------~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s-------------~~~dg~i~iwd  321 (375)
                                               ...+..+..|...+..++++   |||+++++             ...+..|++||
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s---~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d  597 (1045)
T 1k32_A          521 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL---ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD  597 (1045)
T ss_dssp             TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC---SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred             CCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEc---CCCeEEEEecccCcccccccccCCCceEEEEE
Confidence                                     00122344566788999999   99987875             12356789999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +.+++..          .+.   ..+..++++| ||++|++++.| .|++|+++
T Consensus       598 ~~~~~~~----------~l~---~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          598 VKTRKVT----------EVK---NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             TTTCCEE----------EEE---EEEEEEEECT-TSCEEEEEETT-SCEEEEES
T ss_pred             CCCCcEE----------Eee---cCcceEEECC-CCCEEEEEcCC-cEEEEeCc
Confidence            9887421          111   6688899999 99999999877 79999973

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.96  E-value=1.3e-26  Score=213.54  Aligned_cols=311  Identities=11%  Similarity=-0.004  Sum_probs=208.2

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-eEeeecC-----------------ccEEEEEEeCCCCeEEEEcC
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVTDVGN-----------------GPVTSLCFKSGNEDIIYVSS   78 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~-----------------~~v~~l~~~~~~~~l~~~~~   78 (375)
                      .+..+.|. .  +.+++++.|+ | +||+.+++.+ ..+..+.                 ..|.+++|+|+ +.++.+. 
T Consensus        27 ~~~~~~w~-g--~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-   99 (706)
T 2z3z_A           27 YVVGLQWM-G--DNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-   99 (706)
T ss_dssp             -CTTCEEE-T--TEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred             cCCCCcCc-C--CeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence            35667888 3  4556666677 8 9999999873 4444333                 46999999999 6666654 


Q ss_pred             CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----ceeeeeEecCcccc-----
Q 017194           79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLYKSLRAGHSSI-----  148 (375)
Q Consensus        79 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~-----  148 (375)
                      ++.|++||+.+++...    +..+...+.+++|+|||++|+++ .++.|++||+.+     ++...... .+...     
T Consensus       100 ~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~  173 (706)
T 2z3z_A          100 QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQ  173 (706)
T ss_dssp             TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS-CCBTTEEESS
T ss_pred             CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc-CCCCCeEccc
Confidence            6999999998764322    22235678899999999999985 679999999988     76655444 33332     


Q ss_pred             ---------eeEEEEeeCCCcEEEEee---------------------------------cCCeEEEeeCCCCCcceEEe
Q 017194          149 ---------CSSVQFIPWKPWEVISGG---------------------------------LDSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       149 ---------v~~~~~~~~~~~~l~~~~---------------------------------~d~~i~~wd~~~~~~~~~~~  186 (375)
                               +.++.|+|+|+ .|++++                                 .+..|++||+.+++......
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~  252 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT  252 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred             chhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence                     48999999999 677776                                 44689999998876433221


Q ss_pred             cCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-----cEEEEeCCCcceeeccc-ccCC---CCCCce
Q 017194          187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVINIESELNISRSK-STTK---PLKGSQ  257 (375)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~~~~---~~~~~~  257 (375)
                      ..           .+...+..++|+|      +++.|++++.++     .|++||+.++....... ....   .....+
T Consensus       253 ~~-----------~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  315 (706)
T 2z3z_A          253 GE-----------PKEKFLTNLSWSP------DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL  315 (706)
T ss_dssp             CS-----------CTTCEEEEEEECT------TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred             CC-----------CCceeEeeEEEEC------CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence            10           0346789999999      899999988775     89999999873322221 1111   123568


Q ss_pred             eecc--cccceeeee------eeecCCcceeEeeeeecCCCccEEE-EEEeecCCCCcEEEEe-cCCC----eEEEEeCC
Q 017194          258 STSK--VNIRDAEME------ILDQSGGKRLHLDYSVGGHTAAASC-VAFSMFGERGKYLISG-GNDK----LVKVWDCS  323 (375)
Q Consensus       258 ~~s~--~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~~l~s~-~~dg----~i~iwd~~  323 (375)
                      .|+|  ||++++...      .+...  ........+..+...+.. ++|+   |+|+.|+.+ +.++    .|+.||+.
T Consensus       316 ~~sp~~dg~~l~~~~~~g~~~l~~~~--~~~~~~~~l~~~~~~v~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          316 TFLPGSNNQFIWQSRRDGWNHLYLYD--TTGRLIRQVTKGEWEVTNFAGFD---PKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             EECTTCSSEEEEEECTTSSCEEEEEE--TTSCEEEECCCSSSCEEEEEEEC---TTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             eeecCCCCEEEEEEccCCccEEEEEE--CCCCEEEecCCCCeEEEeeeEEc---CCCCEEEEEecCCCCceEEEEEEEcC
Confidence            9999  999776421      11111  012234456667777876 7999   999877654 4444    67777877


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC----CeEEEEecC
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----KVVKVYSIS  375 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~v~iw~~~  375 (375)
                      +++.           ....|...+..++|+| ||++|+....+    +.|++|+++
T Consensus       391 ~~~~-----------~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          391 GGKT-----------KDLTPESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             CCCC-----------EESCCSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESS
T ss_pred             CCCc-----------eeccCCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECC
Confidence            7521           1123566788999999 99988876443    569999863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=2.4e-25  Score=186.22  Aligned_cols=258  Identities=10%  Similarity=0.031  Sum_probs=183.5

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEE-EeCCCCcEEEEecccCce-eeEeeecCccEEEEEEeCCCCeEEEEcCCC-
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-   80 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-   80 (375)
                      +++.+..+..+...+ +++|+|+ +++++ ++..++.|.+||+.+++. ...+..+..+..+++|+|++++++++..++ 
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  106 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH  106 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred             ccceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence            455556666666677 9999999 66554 555588999999999987 777777777766699999999998555442 


Q ss_pred             --eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEE-eCCCc-EEEEeCcCceee----eeEecCcccceeEE
Q 017194           81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGD-VKIIDIRQHCLY----KSLRAGHSSICSSV  152 (375)
Q Consensus        81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~----~~~~~~~~~~v~~~  152 (375)
                        .|.+||+.+++....+..    .....+++|+|++++++++ ..++. |.+|++.....+    .... .....+..+
T Consensus       107 ~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~  181 (331)
T 3u4y_A          107 PFNMQSYSFLKNKFISTIPI----PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNI  181 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEEC----CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEE
T ss_pred             cccEEEEECCCCCeEEEEEC----CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccce
Confidence              899999987655443322    3456899999999866555 45588 999998753322    1122 244567999


Q ss_pred             EEeeCCCcEEEEeecCCeEEEeeCCCCCc---ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-c
Q 017194          153 QFIPWKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-G  228 (375)
Q Consensus       153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~  228 (375)
                      +|+|+++++++++..++.|.+||+.+++.   +..+..              ...+..++|+|      +++++++++ .
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--------------~~~~~~~~~sp------dg~~l~v~~~~  241 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT--------------NNLPGTIVVSR------DGSTVYVLTES  241 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--------------SSCCCCEEECT------TSSEEEEECSS
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--------------CCCCceEEECC------CCCEEEEEEcC
Confidence            99999985566666789999999999888   666653              35678899999      799776665 5


Q ss_pred             CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec---CCCccEEEEEEeecCCCC
Q 017194          229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERG  305 (375)
Q Consensus       229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~  305 (375)
                      ++.|.+||+.+++......                                  ....+.   ........++|+   |+|
T Consensus       242 ~~~i~~~d~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~s---pdg  284 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKS----------------------------------FGHGLLIDPRPLFGANQMALN---KTE  284 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEE----------------------------------EECCCCCCCGGGTTCCCEEEC---TTS
T ss_pred             CCEEEEEECCCCceeeecc----------------------------------cccccccCCCCcccccceEEC---CCC
Confidence            7789999998754311100                                  000000   111122568999   999


Q ss_pred             cEEEE-ecCCCeEEEEeCCCc
Q 017194          306 KYLIS-GGNDKLVKVWDCSRF  325 (375)
Q Consensus       306 ~~l~s-~~~dg~i~iwd~~~~  325 (375)
                      ++|++ +..++.|.+||+...
T Consensus       285 ~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          285 TKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             SEEEEEETTTTEEEEEETTSC
T ss_pred             CEEEEecCCCCcEEEEEecCC
Confidence            98765 455779999999885

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=3.8e-25  Score=185.91  Aligned_cols=255  Identities=11%  Similarity=0.155  Sum_probs=177.6

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCC-CcEEEEecc--cCce--eeEeeecCccEEEEEEeCCCCeEEEEcC-CCeEEEEE
Q 017194           13 GHKATATCCIASRDRPGFVASSGED-GCICWFDLR--SKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFD   86 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d-~~i~iw~~~--~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd   86 (375)
                      .|...+.+++|+|+ +++|++++.+ +.|.+|++.  +++.  +..+..+. .+..++|+|++++|++++. ++.|.+||
T Consensus        35 ~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           35 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            47788999999999 7877777765 999999997  5553  34444434 7899999999998876665 78999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcC-ceeee----eEecCcccceeEEEEeeCCCc
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQ-HCLYK----SLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      +..+........... ...+.+++|+|+++++++++ .++.|.+||+.+ ++...    .+.......+..++|+|++++
T Consensus       113 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence            953333333333333 34688999999999888887 889999999987 54432    233123457889999999985


Q ss_pred             EEEEeecCCeEEEeeCCC--CCcc--eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEE
Q 017194          161 EVISGGLDSKLVMWDFSK--GRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVI  235 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~  235 (375)
                      +++++..++.|.+||++.  ++..  ..+... +..      ......+..++|+|      ++++|+++ ..++.|.+|
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~-~~~------~~~~~~~~~i~~s~------dg~~l~v~~~~~~~i~v~  258 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMM-PEN------FSDTRWAADIHITP------DGRHLYACDRTASLITVF  258 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECS-CTT------CCSCCCEEEEEECT------TSSEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeecccc-Ccc------ccccCCccceEECC------CCCEEEEEecCCCEEEEE
Confidence            455666899999999954  4332  222211 000      00123567899999      78877754 478999999


Q ss_pred             eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CC
Q 017194          236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-ND  314 (375)
Q Consensus       236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~d  314 (375)
                      |+....                                    ...+.+..+..+.. +..++|+   |+|++|++++ .+
T Consensus       259 d~~~~~------------------------------------~~~~~~~~~~~~~~-~~~~~~s---~dg~~l~~~~~~~  298 (343)
T 1ri6_A          259 SVSEDG------------------------------------SVLSKEGFQPTETQ-PRGFNVD---HSGKYLIAAGQKS  298 (343)
T ss_dssp             EECTTS------------------------------------CCEEEEEEEECSSS-CCCEEEC---TTSSEEEEECTTT
T ss_pred             EEcCCC------------------------------------CceEEeeeecCCCc-cceEEEC---CCCCEEEEecCCC
Confidence            998310                                    01122333433333 7889999   9999888777 68


Q ss_pred             CeEEEEeCC
Q 017194          315 KLVKVWDCS  323 (375)
Q Consensus       315 g~i~iwd~~  323 (375)
                      +.|.+|+++
T Consensus       299 ~~v~v~~~d  307 (343)
T 1ri6_A          299 HHISVYEIV  307 (343)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEEc
Confidence            999999554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=1.1e-24  Score=183.33  Aligned_cols=272  Identities=10%  Similarity=0.099  Sum_probs=184.3

Q ss_pred             CCCcEEEEecc--cCceee-EeeecCccEEEEEEeCCCCeEEEEcC---CCeEEEEECCCCCcccccccccCCCcceeEE
Q 017194           36 EDGCICWFDLR--SKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQI  109 (375)
Q Consensus        36 ~d~~i~iw~~~--~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  109 (375)
                      .++.|.+|+++  +++... ....+...+..++|+|+|+ |++++.   ++.|.+|++.+++ ...+.....+...+..+
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-EEEEEEEEEESCCCSEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-EEEeeeeecCCCCCEEE
Confidence            35567777765  444322 2334566778899999999 665554   5899999997543 33444444456788999


Q ss_pred             EEcCCCCeEEEEe-CCCcEEEEeCcC-c--eeeeeEecC--------cccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194          110 VCNPKSSFLACAD-DGGDVKIIDIRQ-H--CLYKSLRAG--------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS  177 (375)
Q Consensus       110 ~~~~~~~~l~~~~-~dg~i~iwd~~~-~--~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~  177 (375)
                      +|+|++++|++++ .++.|.+|++.. +  +.+..+...        +...+.+++|+|+++ ++++...++.|.+||+.
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEEC
Confidence            9999999988887 778999999962 2  333333300        112478899999999 78888889999999998


Q ss_pred             -CCCcceE--EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE-EecCCcEEEEeCCCcceeecccccCCCC
Q 017194          178 -KGRPNKI--VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSKSTTKPL  253 (375)
Q Consensus       178 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~  253 (375)
                       +++....  +...            ....+..++|+|      +++++++ ...++.|.+|++.....           
T Consensus       171 ~~g~~~~~~~~~~~------------~g~~p~~~~~sp------dg~~l~v~~~~~~~v~v~~~~~~~g-----------  221 (347)
T 3hfq_A          171 DAGQLSEQSVLTME------------AGFGPRHLVFSP------DGQYAFLAGELSSQIASLKYDTQTG-----------  221 (347)
T ss_dssp             TTSCEEEEEEEECC------------TTCCEEEEEECT------TSSEEEEEETTTTEEEEEEEETTTT-----------
T ss_pred             CCCcEEEeeeEEcC------------CCCCCceEEECC------CCCEEEEEeCCCCEEEEEEecCCCC-----------
Confidence             4443222  1211            123567899999      7986665 45788999999874100           


Q ss_pred             CCceeecccccceeeeeeeecCCcceeEeeeeecCC------CccEEEEEEeecCCCCcEE-EEecCCCeEEEEeCCCce
Q 017194          254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH------TAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~~~l-~s~~~dg~i~iwd~~~~~  326 (375)
                                               .......+...      ...+..++|+   |||++| ++...++.|.+|++....
T Consensus       222 -------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~s---pdG~~l~v~~~~~~~v~v~~~~~~g  273 (347)
T 3hfq_A          222 -------------------------AFTQLGIVKTIPADYTAHNGAAAIRLS---HDGHFLYVSNRGYNTLAVFAVTADG  273 (347)
T ss_dssp             -------------------------EEEEEEEEESSCTTCCSCCEEEEEEEC---TTSCEEEEEEETTTEEEEEEECGGG
T ss_pred             -------------------------ceEEeeeeeecCCCCCCCCcceeEEEC---CCCCEEEEEeCCCCEEEEEEECCCC
Confidence                                     01111111111      2458899999   999977 455668999999997321


Q ss_pred             eeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC-CCeEEEEec
Q 017194          327 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI  374 (375)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~iw~~  374 (375)
                      ..      ..+.....+...+..++|+| +|++|++++. ++.|.+|++
T Consensus       274 ~~------~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          274 HL------TLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             CE------EEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cE------EEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEE
Confidence            11      22333444556788999999 9998888775 489999965

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=1.1e-25  Score=202.64  Aligned_cols=269  Identities=9%  Similarity=0.012  Sum_probs=190.8

Q ss_pred             CCCceeEEEEecCCCCEEEEeCC-CCcEEEEecccCceeeEeeecC-ccEEEEEEeCCCCeEEEEcC---CCeEEEEECC
Q 017194           14 HKATATCCIASRDRPGFVASSGE-DGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSS---GKEVKSFDVH   88 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~   88 (375)
                      +..+|++++|+|| |+.||+++. ||+++||++.+++. ..+..|. ..+..++|+|+ +.++++..   +....+|.+.
T Consensus        20 ~~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           20 IAVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HHSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             hccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            3568999999999 899998877 99999999976654 4444444 68999999999 66776664   4455665543


Q ss_pred             C--CCcccccccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           89 M--PASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        89 ~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      .  ......+...    ..+...+|+|+++. +++...++.+.+||+.+++......  +..  .+++|+|||+ .++++
T Consensus        97 ~~~~g~~~~l~~~----~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG~-~la~~  167 (582)
T 3o4h_A           97 TSRPGEEQRLEAV----KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRGD-LIAGL  167 (582)
T ss_dssp             TTSTTCCEECTTS----CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEETT-EEEEE
T ss_pred             ccCCCccccccCC----CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCCC-EEEEE
Confidence            3  2122222222    23445678888754 3333444556699999887655554  333  8899999999 68877


Q ss_pred             ecC----CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC--cEEEEeCCC
Q 017194          166 GLD----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--VVDVINIES  239 (375)
Q Consensus       166 ~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~  239 (375)
                      +.+    +.|++||+.+++.. .+. .            +...+..++|+|      ||+.|+++..++  .|++||+.+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~-~l~-~------------~~~~~~~~~~Sp------DG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLR-VFD-S------------GEGSFSSASISP------GMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCE-EEC-C------------SSCEEEEEEECT------TSCEEEEEECSSCEEEEEECTTT
T ss_pred             EEcCCCCeEEEEEcCCCCCce-Eee-c------------CCCccccceECC------CCCEEEEccCCCeeEEEEEcCCC
Confidence            766    78999999988764 333 2            356789999999      899999888888  899999987


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE--------EeecCCCCcEEEEe
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA--------FSMFGERGKYLISG  311 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~~~~l~s~  311 (375)
                      ++..                                         .+.+|...+..++        |+   |||.+++++
T Consensus       228 ~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~s---pdg~~~~~~  263 (582)
T 3o4h_A          228 GSVE-----------------------------------------DLELPSKDFSSYRPTAITWLGYL---PDGRLAVVA  263 (582)
T ss_dssp             CCEE-----------------------------------------ECCCSCSHHHHHCCSEEEEEEEC---TTSCEEEEE
T ss_pred             CcEE-----------------------------------------EccCCCcChhhhhhccccceeEc---CCCcEEEEE
Confidence            5322                                         2334444444444        99   999999999


Q ss_pred             cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCC---eEEEEec
Q 017194          312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---VVKVYSI  374 (375)
Q Consensus       312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~v~iw~~  374 (375)
                      +.|+.+++|++  ++         ...   ...+.+.+++|+  +++++++++.+.   .+++|+.
T Consensus       264 ~~~g~~~l~~~--g~---------~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          264 RREGRSAVFID--GE---------RVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EETTEEEEEET--TE---------EEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred             EcCCcEEEEEE--CC---------eec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence            99999999999  53         221   233678888998  788888888774   4666654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=1.3e-24  Score=187.29  Aligned_cols=209  Identities=15%  Similarity=0.163  Sum_probs=158.0

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce----------ee-----EeeecCccEEEEEEeCCCCeEE----E
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV----------QL-----VTDVGNGPVTSLCFKSGNEDII----Y   75 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----------~~-----~~~~~~~~v~~l~~~~~~~~l~----~   75 (375)
                      ...++.++++++ +.++++++.++ +++|+......          ..     ....+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            446889999998 78899998887 89987542110          00     0112466799999999999999    7


Q ss_pred             EcCCCeEEEEECCCC--------CcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcc
Q 017194           76 VSSGKEVKSFDVHMP--------ASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHS  146 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  146 (375)
                      ++.|+.|++||+.+.        +....+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+.... +|.
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~  192 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PST  192 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCC
Confidence            888999999998753        112234556678999999999997 7899999999999999999887776667 789


Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      ..|.+++|+|+|+ +|++|+.||.|++||++ ++....+.... ..     ...+...+.+++|++      ++.++++.
T Consensus       193 ~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~-~~-----~~~~~~~v~~v~w~~------~~~~l~~~  258 (434)
T 2oit_A          193 VAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPP-FY-----ESDHPVRVLDVLWIG------TYVFAIVY  258 (434)
T ss_dssp             GCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCT-TC-----CTTSCEEEEEEEEEE------TTEEEEEE
T ss_pred             CceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCc-cc-----CCCCceeEEEEEEec------CceEEEEE
Confidence            9999999999998 79999999999999998 55555544220 00     001234789999998      56666543


Q ss_pred             -ecCC------cEEEEeCCCc
Q 017194          227 -KGDG------VVDVINIESE  240 (375)
Q Consensus       227 -~~dg------~i~i~d~~~~  240 (375)
                       ..+|      .+++|+++..
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCCT
T ss_pred             ccCCCccCCCCceEEEEeccC
Confidence             3443      3899999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.6e-25  Score=184.01  Aligned_cols=241  Identities=9%  Similarity=-0.002  Sum_probs=176.6

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeEeeec-CccEEEEEEeCCCCeEEEEcC--CCeE
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSS--GKEV   82 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~--d~~i   82 (375)
                      ....+..|...|.+++|+|+ +++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++++|++++.  ++..
T Consensus        33 ~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           33 KMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS  110 (297)
T ss_dssp             EEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred             ceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence            34567779999999999999 88998876 78999999998 8776666555 478899999999999999883  3444


Q ss_pred             EE--EECCCCCcccccccccCCCcceeEEEEcCCCCeEE-EEeCCCcEEEEeCcC-ceeeeeEecCcccceeEEEEeeCC
Q 017194           83 KS--FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        83 ~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~  158 (375)
                      .+  |+..++. ..   .+.. ...+..++|+|++++|+ ++..++.+++|+++. ......+. .+...+.+++|+|++
T Consensus       111 ~l~~~~~~~~~-~~---~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg  184 (297)
T 2ojh_A          111 AIYLLPSTGGT-PR---LMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDG  184 (297)
T ss_dssp             EEEEEETTCCC-CE---ECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTS
T ss_pred             eEEEEECCCCc-eE---Eeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCC
Confidence            44  4555432 12   2222 23488899999999877 677889999998642 23334555 677889999999999


Q ss_pred             CcEEEEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC--------
Q 017194          159 PWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------  229 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--------  229 (375)
                      +.+++++..++.+++|+++ .+.....+..             +...+..++|+|      ++++|++++.+        
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~------dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVERITD-------------SAYGDWFPHPSP------SGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEEECCC-------------CSEEEEEEEECT------TSSEEEEEEEETTCCSCCS
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcEEEec-------------CCcccCCeEECC------CCCEEEEEEcCCCCCcccc
Confidence            8433444468999999986 4444444432             346788999999      79999888765        


Q ss_pred             ---CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194          230 ---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK  306 (375)
Q Consensus       230 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  306 (375)
                         +.|.+||+.+++.                                      ..+..+.+|...+..++|+   |+++
T Consensus       246 ~~~~~l~~~d~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~s---pdg~  284 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNV--------------------------------------ETLFDLFGGQGTMNSPNWS---PDGD  284 (297)
T ss_dssp             SEEEEEEEEETTSCSC--------------------------------------EEEEEEEESTTTSCSCCBC---TTSS
T ss_pred             cCceEEEEEecCCCCc--------------------------------------eeeeccCCCCcccccceEC---CCCC
Confidence               5699999986421                                      2233444667778888999   8999


Q ss_pred             EEEEecCCC
Q 017194          307 YLISGGNDK  315 (375)
Q Consensus       307 ~l~s~~~dg  315 (375)
                      +|++++.|.
T Consensus       285 ~l~~~~~~~  293 (297)
T 2ojh_A          285 EFAYVRYFP  293 (297)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            888776653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.7e-25  Score=207.26  Aligned_cols=292  Identities=10%  Similarity=0.034  Sum_probs=195.7

Q ss_pred             CccEEEEEEeCCCCeEEEEcC-CC-----eEEEEECCCCCcccccccccCCC----------------------cceeEE
Q 017194           58 NGPVTSLCFKSGNEDIIYVSS-GK-----EVKSFDVHMPASWRPLESYNYNK----------------------EEINQI  109 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~----------------------~~v~~~  109 (375)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++....+.. ..+.                      ..+.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS-KVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG-GGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch-hhcccccccccchhhhhhhhhhhccccCccee
Confidence            457899999999999999998 87     899999998764333321 1111                      348899


Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCcCce--eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec
Q 017194          110 VCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  187 (375)
                      +|+|||++|++++. +.|++||+.++.  ....+. .|...+..++|+|+|+ .|+.++ ++.|++||+.+++.......
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEeccC
Confidence            99999999999886 999999998873  344566 6778899999999998 577776 56999999988765433221


Q ss_pred             CCCCCCCCC-Cc--ccCCCceeEEeecCCccccCCCCEEEEEecCC---------------------------------c
Q 017194          188 GLPENNGNA-GQ--CYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---------------------------------V  231 (375)
Q Consensus       188 ~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---------------------------------~  231 (375)
                      +........ ..  ......+..++|+|      ||+.|++++.|+                                 .
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~Sp------Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAP------DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECT------TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             CccceeccccceeeeeccccccceEECC------CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            100000000 00  00001247799999      899999988765                                 7


Q ss_pred             EEEEeCCC-cceeecccc-cCCCCCCceeecccccceeeeeeeecC--------CcceeEeeeeecCCCc----cEEEEE
Q 017194          232 VDVINIES-ELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQS--------GGKRLHLDYSVGGHTA----AASCVA  297 (375)
Q Consensus       232 i~i~d~~~-~~~~~~~~~-~~~~~~~~~~~s~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~v~~~~  297 (375)
                      |.+||+.+ ++....... ........++| |||+.+++.......        +....+....+..+..    .+..++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            89999987 654433222 23345667899 999999864321111        1111111112222221    345789


Q ss_pred             EeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeee-eecCCCCCcEEE-eeCCC--eEEEEe
Q 017194          298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL-CTTPTESENLVV-CDTSK--VVKVYS  373 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s-~~~dg--~v~iw~  373 (375)
                      |+   |||+++++++.||.++||.+....        . ...+..|...+..+ .|+| +++.|+. ++.|+  .+++|+
T Consensus       344 ~s---pdg~~~~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          344 FL---DDGSILWSSERTGFQHLYRIDSKG--------K-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             EC---TTSCEEEEECTTSSCEEEEECSSS--------C-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEE
T ss_pred             EC---CCCeEEEEecCCCccEEEEEcCCC--------C-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEE
Confidence            99   999999999999988888766321        3 34455677778777 5998 8887754 45555  899998


Q ss_pred             c
Q 017194          374 I  374 (375)
Q Consensus       374 ~  374 (375)
                      +
T Consensus       411 ~  411 (741)
T 2ecf_A          411 V  411 (741)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.2e-24  Score=200.34  Aligned_cols=284  Identities=12%  Similarity=0.028  Sum_probs=193.8

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-----C
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-----P   90 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-----~   90 (375)
                      ..|.+++|+|+ +.++++.  ++.|++||+.+++... +..+...+.+++|+|+|++|+++ .++.|++||+.+     +
T Consensus        82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            56999999999 6666654  4899999998876544 44467788999999999999985 589999999987     5


Q ss_pred             CcccccccccC-----------CCcceeEEEEcCCCCeEEEEe---------------------------------CCCc
Q 017194           91 ASWRPLESYNY-----------NKEEINQIVCNPKSSFLACAD---------------------------------DGGD  126 (375)
Q Consensus        91 ~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~---------------------------------~dg~  126 (375)
                      +..........           +...+.++.|+|||++|++++                                 .+..
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            43322221100           011258999999999999987                                 4467


Q ss_pred             EEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEEEEeecCC-----eEEEeeCCCCCcceEEecCCCCCCCCCCccc
Q 017194          127 VKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDS-----KLVMWDFSKGRPNKIVNFGLPENNGNAGQCY  200 (375)
Q Consensus       127 i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  200 (375)
                      |++||+.+++....... .|...+..++|+|+|+ .|++++.++     .|++||+.+++....+....           
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-----------  304 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-----------  304 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-----------
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-----------
Confidence            99999998876544321 4667899999999998 677777665     89999999884443332110           


Q ss_pred             CCC---ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC-CcceeecccccCCCCCCc-eeecccccceeeeeeeecC
Q 017194          201 NPA---FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-SELNISRSKSTTKPLKGS-QSTSKVNIRDAEMEILDQS  275 (375)
Q Consensus       201 ~~~---~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~-~~~s~~g~~~~~~~~~~~~  275 (375)
                      ...   .+..++|+|    ..+++++++++.+|.+++|++. ++........ ....+.. +.++|||+.+++.+..+..
T Consensus       305 ~~~~~~~~~~~~~sp----~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLP----GSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             CSSCCCCCSCCEECT----TCSSEEEEEECTTSSCEEEEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             CCCeECccCCceeec----CCCCEEEEEEccCCccEEEEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence            111   235677876    0148899999999999999876 3333333322 2222333 6899999988764322210


Q ss_pred             --------CcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC----CeEEEEeCCCce
Q 017194          276 --------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQ  326 (375)
Q Consensus       276 --------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d----g~i~iwd~~~~~  326 (375)
                              +.... ....+ .|...+..++|+   |||++|+....+    +.|++||+.+++
T Consensus       380 ~~~~l~~~d~~~~-~~~~l-~~~~~~~~~~~s---pdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          380 LERHFYCIDIKGG-KTKDL-TPESGMHRTQLS---PDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TCBEEEEEETTCC-CCEES-CCSSSEEEEEEC---TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ceEEEEEEEcCCC-Cceec-cCCCceEEEEEC---CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence                    00000 11222 256678999999   999988866433    569999998875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.8e-24  Score=199.70  Aligned_cols=324  Identities=7%  Similarity=0.024  Sum_probs=208.8

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCc---cEEEEEEeCCCCeEEEEcC---------CCeEEEEEC
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG---PVTSLCFKSGNEDIIYVSS---------GKEVKSFDV   87 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~~~---------d~~i~iwd~   87 (375)
                      +++|+|+ +++++++ .|++|++||+.+++....+..|..   .+.+++|+|||++|++++.         ++.|++||+
T Consensus        20 ~~~~s~d-g~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISG-QEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSS-SEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCC-CeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            6799999 6666554 689999999999998777765544   4899999999999998876         689999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce-----------------e
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----------------S  150 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~  150 (375)
                      .+++.... ..+   ...+..++|+|||+.|+.+. ++.|++||+.+++..+....++...+                 .
T Consensus        98 ~~g~~~~~-~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           98 SNGEFVRG-NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             TTTEECCS-SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             CCCccccc-eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            97654211 111   24688999999999999985 68999999988766543321332222                 4


Q ss_pred             EEEEeeCCCcEEEEeecCC----------------------------------eEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194          151 SVQFIPWKPWEVISGGLDS----------------------------------KLVMWDFSKGRPNKIVNFGLPENNGNA  196 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~----------------------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~  196 (375)
                      +++|+|||+ .|++++.|.                                  .|++||+.+++....+....+.     
T Consensus       173 ~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-----  246 (719)
T 1z68_A          173 ALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-----  246 (719)
T ss_dssp             CEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-----
T ss_pred             cEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc-----
Confidence            899999999 677776542                                  7889999877653111111000     


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecC----CcEEEEe----CCCcceeeccc---ccCCCCCC-----ceeec
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----GVVDVIN----IESELNISRSK---STTKPLKG-----SQSTS  260 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~~-----~~~~s  260 (375)
                      ....+...+..++|+|      |++++++....    ..|.+||    +.+++......   ........     ...|+
T Consensus       247 ~~~~~~~~~~~~~~Sp------D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          247 MIASSDYYFSWLTWVT------DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             HHHTSCEEEEEEEESS------SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred             cCCCCcceEEEeEEeC------CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence            0001356789999999      77777775433    2488899    77765444331   12222233     67899


Q ss_pred             ccccceeeeee----------eecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC----CCeEEEEeCCC--
Q 017194          261 KVNIRDAEMEI----------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----DKLVKVWDCSR--  324 (375)
Q Consensus       261 ~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~----dg~i~iwd~~~--  324 (375)
                      |||+.++....          ++.....    ...+..+...+..+.++   .++.+++++..    ++.+++|.+..  
T Consensus       321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~---d~~~i~~~~~~~~~~~~~~~l~~~~~~~  393 (719)
T 1z68_A          321 YDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV---TQDSLFYSSNEFEEYPGRRNIYRISIGS  393 (719)
T ss_dssp             TTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE---CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred             CCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE---eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence            99997765211          1111111    22444555567777776   44444555544    57888988764  


Q ss_pred             ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE-eeCC--CeEEEEec
Q 017194          325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV-CDTS--KVVKVYSI  374 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d--g~v~iw~~  374 (375)
                      +....    ..+...+.+|...+..+.|+| ++++++. ++.+  ..+.+|++
T Consensus       394 g~~~~----~~l~~~~~~~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          394 YPPSK----KCVTCHLRKERCQYYTASFSD-YAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             SSCCE----EESSTTTTTTTBCBEEEEECG-GGSSEEEEECCBSSCEEEEECS
T ss_pred             CCCCc----eeccCccCCCCCceEEEEECC-CCCEEEEEcCCCCCCeEEEEEC
Confidence            21000    011111233667788899999 8877774 3333  46777765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=1.7e-24  Score=182.31  Aligned_cols=287  Identities=8%  Similarity=-0.008  Sum_probs=185.8

Q ss_pred             EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecC-ccEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCccccccc
Q 017194           21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      ++++++ +.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++....+..
T Consensus         5 ~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            5 PALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccccCC-CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            466776 7899999999999999999998888877543 2578999999998665 455688999999987654433332


Q ss_pred             ccCC---CcceeEEEEcCCCCeEEEEeCC------------CcEEEEeCcCcee---eeeEecCcccceeEEEEeeCCCc
Q 017194           99 YNYN---KEEINQIVCNPKSSFLACADDG------------GDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        99 ~~~~---~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      ....   ...+..++|+|+++++++++.+            +.|.+||+.+++.   +..+.  +...+.+++|+|+++ 
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSC-
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCc-
Confidence            1000   2337889999999999998865            8999999988543   34444  344688999999998 


Q ss_pred             EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCC----CCccc---CC----CceeEEeecCCccccCCCCEEEEEe-c
Q 017194          161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN----AGQCY---NP----AFVHAIAIPDADMLDKTNKICVVAK-G  228 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~----~~~~~---~~----~~v~~~~~~~~~~~~~~~~~l~~~~-~  228 (375)
                      +++ ++  +.|.+||+.+++....+..+.......    ....+   ..    .....+++++      ++....... .
T Consensus       161 l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~~~~  231 (349)
T 1jmx_B          161 LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK------DDKQDPATADL  231 (349)
T ss_dssp             EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------------CCCEE
T ss_pred             EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC------CCcCCcccccc
Confidence            555 33  349999999988777665431000000    00000   00    0122344433      111000000 0


Q ss_pred             CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC-CCcE
Q 017194          229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKY  307 (375)
Q Consensus       229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~  307 (375)
                      ...+..+|..+++.                                      . ...+..+...+..++++   | ++++
T Consensus       232 ~~~~~~~~~~~~~~--------------------------------------~-~~~~~~~~~~~~~~~~s---p~dg~~  269 (349)
T 1jmx_B          232 LYGYLSVDLKTGKT--------------------------------------H-TQEFADLTELYFTGLRS---PKDPNQ  269 (349)
T ss_dssp             EEEEEEEETTTCCE--------------------------------------E-EEEEEECSSCEEEEEEC---SSCTTE
T ss_pred             ceeEEEEeccCCcE--------------------------------------E-ecccccCCCcceeeEec---CCCCCE
Confidence            00112234433210                                      0 01112245578899999   9 9999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          308 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       308 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ++++  ++.|.+||+.+++..         ..+. ....+.+++|+| ++++|++++.++.|++||++
T Consensus       270 l~~~--~~~v~~~d~~~~~~~---------~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          270 IYGV--LNRLAKYDLKQRKLI---------KAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEE--ESEEEEEETTTTEEE---------EEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred             EEEE--cCeEEEEECccCeEE---------EEEc-CCCCccceEECC-CCCEEEEecCCCeEEEEecc
Confidence            9988  889999999987432         2222 234567899999 88899988889999999974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=5.6e-24  Score=179.10  Aligned_cols=261  Identities=10%  Similarity=0.116  Sum_probs=177.8

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeC--CCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEc-CCCeEEEEE
Q 017194           12 RGHKATATCCIASRDRPGFVASSG--EDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFD   86 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d~~i~iwd   86 (375)
                      ..+...+..++|+|+ +++++++.  .++.|.+|++.+++  .+..+..+...+..++|+|+|++|++++ .++.+.+|+
T Consensus        36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            345567788999998 77444443  26899999997765  3444455778889999999999888887 678999999


Q ss_pred             CCCCCcccccccccC---------CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc-Cceee--eeEecCcccceeEEEE
Q 017194           87 VHMPASWRPLESYNY---------NKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLY--KSLRAGHSSICSSVQF  154 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~--~~~~~~~~~~v~~~~~  154 (375)
                      +........+.....         +...+.+++|+|+++++++...++.|.+|++. +++..  ..+.......+..++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            964333333332211         12347889999999966666678899999998 45432  2223122336788999


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCC--CCcc--eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE-EEecC
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSK--GRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGD  229 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~d  229 (375)
                      +|+|++++++...++.|.+|++..  ++..  ..+... +.      .......+..++|+|      ++++|+ +...+
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-~~------~~~~~~~~~~i~~sp------dG~~l~v~~~~~  261 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI-PA------DYTAHNGAAAIRLSH------DGHFLYVSNRGY  261 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS-CT------TCCSCCEEEEEEECT------TSCEEEEEEETT
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec-CC------CCCCCCcceeEEECC------CCCEEEEEeCCC
Confidence            999985555667789999999874  4322  122211 00      000114578899999      798775 45568


Q ss_pred             CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194          230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI  309 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~  309 (375)
                      +.|.+|++...                                     .....+..+..+...+..++|+   |||++|+
T Consensus       262 ~~v~v~~~~~~-------------------------------------g~~~~~~~~~~~~~~~~~~~~s---pdg~~l~  301 (347)
T 3hfq_A          262 NTLAVFAVTAD-------------------------------------GHLTLIQQISTEGDFPRDFDLD---PTEAFVV  301 (347)
T ss_dssp             TEEEEEEECGG-------------------------------------GCEEEEEEEECSSSCCCEEEEC---TTSSEEE
T ss_pred             CEEEEEEECCC-------------------------------------CcEEEeEEEecCCCCcCeEEEC---CCCCEEE
Confidence            99999998731                                     1123344555556667899999   9999888


Q ss_pred             EecC-CCeEEEE--eCCCce
Q 017194          310 SGGN-DKLVKVW--DCSRFQ  326 (375)
Q Consensus       310 s~~~-dg~i~iw--d~~~~~  326 (375)
                      +++. ++.|.+|  |..+++
T Consensus       302 v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          302 VVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             EEETTTTEEEEEEECTTTCC
T ss_pred             EEEcCCCcEEEEEEeCCCCe
Confidence            7765 5899999  445553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.94  E-value=2.8e-23  Score=175.73  Aligned_cols=279  Identities=11%  Similarity=0.106  Sum_probs=186.3

Q ss_pred             CEEEEe----CCCCcEEEEecc--cCceeeEeeecCccEEEEEEeCCCCeEEEEcCC----CeEEEEECCCC-Ccccccc
Q 017194           29 GFVASS----GEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMP-ASWRPLE   97 (375)
Q Consensus        29 ~~l~s~----~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----~~i~iwd~~~~-~~~~~~~   97 (375)
                      .+++.|    +.++.|.+|.+.  +++.......+...+..++|+|++++|++++.+    +.|.+|++... .....+.
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~   93 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN   93 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence            345555    346789999774  455433222267778889999999999998875    79999998753 2334444


Q ss_pred             cccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeE----ec-C--------cccceeEEEEeeCCCcEEE
Q 017194           98 SYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSL----RA-G--------HSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~----~~-~--------~~~~v~~~~~~~~~~~~l~  163 (375)
                      ....+......+++  ++++|++++ .++.|.+|++.....+..+    .. +        +...+.+++|+|+++++++
T Consensus        94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~  171 (361)
T 3scy_A           94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA  171 (361)
T ss_dssp             EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred             EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence            44334456677777  787777766 6789999999754322211    10 1        1223578999999985555


Q ss_pred             EeecCCeEEEeeCCCCCc------c------eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCC
Q 017194          164 SGGLDSKLVMWDFSKGRP------N------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDG  230 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg  230 (375)
                      +...++.|.+|++.....      +      ......            ....+..++|+|      +++++++++ .++
T Consensus       172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~sp------dg~~l~v~~~~~~  233 (361)
T 3scy_A          172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA------------PGSGPRHLIFNS------DGKFAYLINEIGG  233 (361)
T ss_dssp             EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC------------TTCCEEEEEECT------TSSEEEEEETTTC
T ss_pred             EeCCCCEEEEEEEcCCCCcccccceeecccccceecC------------CCCCCeEEEEcC------CCCEEEEEcCCCC
Confidence            555689999999875442      2      122222            234578899999      799887777 689


Q ss_pred             cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE
Q 017194          231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS  310 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s  310 (375)
                      .|.+|++.++...                                   ....+.....+......++|+   |||++|++
T Consensus       234 ~v~v~~~~~g~~~-----------------------------------~~~~~~~~~~~~~~~~~i~~s---pdg~~l~v  275 (361)
T 3scy_A          234 TVIAFRYADGMLD-----------------------------------EIQTVAADTVNAQGSGDIHLS---PDGKYLYA  275 (361)
T ss_dssp             EEEEEEEETTEEE-----------------------------------EEEEEESCSSCCCCEEEEEEC---TTSSEEEE
T ss_pred             eEEEEEecCCceE-----------------------------------EeEEEecCCCCCCCcccEEEC---CCCCEEEE
Confidence            9999999854211                                   011122333444557899999   99998866


Q ss_pred             ecC--CCeEEEEeCC--CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194          311 GGN--DKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  374 (375)
Q Consensus       311 ~~~--dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~  374 (375)
                      +..  ++.|.+|++.  +++.       ..+..... ...+..++|+| +|++|++++ .++.|.+|++
T Consensus       276 ~~~~~~~~i~v~~~~~~~g~~-------~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          276 SNRLKADGVAIFKVDETNGTL-------TKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EECSSSCEEEEEEECTTTCCE-------EEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCCEEEEEEEcCCCCcE-------EEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEE
Confidence            655  5899999996  3321       12222222 45678899999 999888887 6799999765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=4.8e-24  Score=178.68  Aligned_cols=250  Identities=13%  Similarity=0.100  Sum_probs=182.4

Q ss_pred             CCCCCeeeecCC-C-ceeEEEEecCCCC-EEEEeCCCCcEEEEecccCceeeEeeec-----CccEEEEEEeCCCCeEEE
Q 017194            4 AEAKPRRLRGHK-A-TATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVG-----NGPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         4 ~~~~~~~l~~h~-~-~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~~   75 (375)
                      +++.+..+.... . .+.+++|+|+ ++ +++++..++.|.+||+.+++.+..+...     ...+..++|+|+++++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~   98 (337)
T 1pby_B           20 KMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             CCcEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence            344445554222 2 4788999999 65 4567777899999999999887766532     226778999999999888


Q ss_pred             Ec------------CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec
Q 017194           76 VS------------SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA  143 (375)
Q Consensus        76 ~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (375)
                      +.            .++.|.+||+.+++....+..    ...+..++|+|++++|+++  ++.|.+||+.+++.+..+. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~-  171 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP-  171 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC-
T ss_pred             EecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee-
Confidence            86            579999999987654433332    3467889999999988888  6889999999998887776 


Q ss_pred             CcccceeEEEEeeCCCcEEEEeecCC-----------------------eEEEeeCCCCCcceEEecCCCCCCCCCCccc
Q 017194          144 GHSSICSSVQFIPWKPWEVISGGLDS-----------------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCY  200 (375)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  200 (375)
                      .+. ....+.|+|++..+++++..++                       .|.+||+.+++.. .+....           
T Consensus       172 ~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-----------  238 (337)
T 1pby_B          172 IQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI-----------  238 (337)
T ss_dssp             STT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE-----------
T ss_pred             ccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC-----------
Confidence            333 1123378999885444443333                       4689999988765 333220           


Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                      +...+..++|+|      ++++++++  ++.|.+||+.+++.                                      
T Consensus       239 ~~~~~~~~~~s~------dg~~l~~~--~~~v~~~d~~~~~~--------------------------------------  272 (337)
T 1pby_B          239 MDVFYFSTAVNP------AKTRAFGA--YNVLESFDLEKNAS--------------------------------------  272 (337)
T ss_dssp             CSSCEEEEEECT------TSSEEEEE--ESEEEEEETTTTEE--------------------------------------
T ss_pred             CCCceeeEEECC------CCCEEEEe--CCeEEEEECCCCcC--------------------------------------
Confidence            235678899999      79998888  68999999987422                                      


Q ss_pred             EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                        +..+.. ...+.+++|+   |+|++|++++.++.|++||+.+++
T Consensus       273 --~~~~~~-~~~~~~~~~s---~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          273 --IKRVPL-PHSYYSVNVS---TDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             --EEEEEC-SSCCCEEEEC---TTSCEEEEESBSSEEEEEETTTCC
T ss_pred             --cceecC-CCceeeEEEC---CCCCEEEEEcCCCcEEEEECcCCc
Confidence              112222 2356789999   999999999999999999999884

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=7e-24  Score=181.34  Aligned_cols=294  Identities=13%  Similarity=0.064  Sum_probs=196.9

Q ss_pred             cCCCCCeeeecCCCceeE-----EEEecCCCCEEEEeCC-CC--cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEE
Q 017194            3 DAEAKPRRLRGHKATATC-----CIASRDRPGFVASSGE-DG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII   74 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~-----~~~~~~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~   74 (375)
                      .++..+..+..|......     .+|+|| +++|+.++. ++  .|.+||+.+++.......+...+..+.|+|+++.|+
T Consensus        18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           18 STGAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred             CCCcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEE
Confidence            466777888888766666     889999 888887776 66  488889998887777666666666788999999999


Q ss_pred             EEcCCCeEEEEECCCCCcccccccccCCCcceeEE--EEcCCCCeEEEEe----------------------CCCcEEEE
Q 017194           75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI--VCNPKSSFLACAD----------------------DGGDVKII  130 (375)
Q Consensus        75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~----------------------~dg~i~iw  130 (375)
                      .++.++.|++||+.+++......   .+...+...  .++|++++++...                      .+..|++|
T Consensus        97 ~~~~~~~l~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEENVVYQ---VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcceeeee---chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            99999999999999875433222   223334333  3589998887432                      34679999


Q ss_pred             eCcCceeeeeEecCcccceeEEEEee-CCCcEEEEeecC------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC-
Q 017194          131 DIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP-  202 (375)
Q Consensus       131 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (375)
                      |+.+++.....  .+...+..++|+| +++ .|+....+      ..|.++|+..++. ..+...            .. 
T Consensus       174 d~~~g~~~~l~--~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~------------~~~  237 (388)
T 3pe7_A          174 DLKTGESTVIL--QENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTH------------AEG  237 (388)
T ss_dssp             ETTTCCEEEEE--EESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCC------------CTT
T ss_pred             ECCCCceEEee--cCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeC------------CCC
Confidence            99988665444  3667789999999 988 56655543      3788888765443 333211            11 


Q ss_pred             CceeEEeecCCccccCCCCEEEEEec-CC----cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          203 AFVHAIAIPDADMLDKTNKICVVAKG-DG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                      ..+..++|+|      +|+.|+..+. ++    .|++||+.+++...                                 
T Consensus       238 ~~~~~~~~sp------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---------------------------------  278 (388)
T 3pe7_A          238 ESCTHEFWVP------DGSALVYVSYLKGSPDRFIYSADPETLENRQ---------------------------------  278 (388)
T ss_dssp             EEEEEEEECT------TSSCEEEEEEETTCCCEEEEEECTTTCCEEE---------------------------------
T ss_pred             cccccceECC------CCCEEEEEecCCCCCcceEEEEecCCCceEE---------------------------------
Confidence            2577889999      7887765443 22    39999998754221                                 


Q ss_pred             ceeEeeeeecCCCcc---EEEEEEeecCCCCcEEEEe---------cCCCeEEEEeCCCceeeeecchhhhhhhhccccc
Q 017194          278 KRLHLDYSVGGHTAA---ASCVAFSMFGERGKYLISG---------GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK  345 (375)
Q Consensus       278 ~~~~~~~~~~~~~~~---v~~~~~s~~~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  345 (375)
                           +..+.++...   ...++|+   |||+.|+..         ..+..|++||+.+++.          ..+..+..
T Consensus       279 -----l~~~~~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~~~  340 (388)
T 3pe7_A          279 -----LTSMPACSHLMSNYDGSLMV---GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----------HRVARHDT  340 (388)
T ss_dssp             -----EEEECCEEEEEECTTSSEEE---EEECCC------------CCCCEEEEEETTTTEE----------EEEEECCC
T ss_pred             -----EEcCCCceeeeecCCCCeEc---cCCCcceeEeeeccccccCCCCEEEEEeccCCce----------EEeccccC
Confidence                 1111111000   0112678   888877753         4567899999998742          12333333


Q ss_pred             -----------ceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194          346 -----------KVNWLCTTPTESENLVVCD-TSKVVKVYSI  374 (375)
Q Consensus       346 -----------~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~  374 (375)
                                 .+..++|+| ||+.|+..+ .+|...+|.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          341 SWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             cccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEE
Confidence                       577889999 998887665 5677777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.4e-22  Score=171.01  Aligned_cols=241  Identities=10%  Similarity=0.083  Sum_probs=181.6

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCC-EEEEeCCCCcEEEEecccCceeeEeeecCcc---------EEEEEEeCCCCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGP---------VTSLCFKSGNEDI   73 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---------v~~l~~~~~~~~l   73 (375)
                      +++.+..+.. ...+..++|+|+ ++ ++++...++.|.+||..+++.+..+..+...         +.+++|+|+++++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  155 (353)
T 3vgz_A           78 TLEVTQAIHN-DLKPFGATINNT-TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV  155 (353)
T ss_dssp             TCCEEEEEEE-SSCCCSEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred             CCeEEEEEec-CCCcceEEECCC-CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEE
Confidence            3444455543 345778999999 66 5666677899999999999988887764322         7889999999988


Q ss_pred             EEEc--CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec---Ccccc
Q 017194           74 IYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GHSSI  148 (375)
Q Consensus        74 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~  148 (375)
                      ++++  .++.|.+||..+++....+.   .+...+..++|+|+++++++++.++.|.+||+.+++.+..+..   ++...
T Consensus       156 ~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  232 (353)
T 3vgz_A          156 YISGIGKESVIWVVDGGNIKLKTAIQ---NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF  232 (353)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEEEEC---CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred             EEEecCCCceEEEEcCCCCceEEEec---CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence            7776  47899999998765443333   2345688899999999999999999999999999988877762   24556


Q ss_pred             eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-
Q 017194          149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-  227 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-  227 (375)
                      +..++|+|+++.++++...++.|.+||+.+++.+..+..+              . ...++|+|      +++.+++++ 
T Consensus       233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~-~~~~~~s~------dg~~l~v~~~  291 (353)
T 3vgz_A          233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--------------E-SLAVLFNP------ARNEAYVTHR  291 (353)
T ss_dssp             EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS--------------S-CCCEEEET------TTTEEEEEET
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--------------C-CceEEECC------CCCEEEEEEC
Confidence            7889999999854555556699999999999988888754              1 25688998      788666555 


Q ss_pred             cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194          228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY  307 (375)
Q Consensus       228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  307 (375)
                      .++.|.+||..+++.                                        +..+.. ...+..++|+   |+|++
T Consensus       292 ~~~~v~~~d~~~~~~----------------------------------------~~~~~~-~~~~~~~~~s---~dg~~  327 (353)
T 3vgz_A          292 QAGKVSVIDAKSYKV----------------------------------------VKTFDT-PTHPNSLALS---ADGKT  327 (353)
T ss_dssp             TTTEEEEEETTTTEE----------------------------------------EEEEEC-CSEEEEEEEC---TTSCE
T ss_pred             CCCeEEEEECCCCeE----------------------------------------EEEEec-CCCCCeEEEc---CCCCE
Confidence            689999999987532                                        222222 2367889999   89987


Q ss_pred             EEEecCC
Q 017194          308 LISGGND  314 (375)
Q Consensus       308 l~s~~~d  314 (375)
                      |+.+..+
T Consensus       328 l~v~~~~  334 (353)
T 3vgz_A          328 LYVSVKQ  334 (353)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            7766554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=2.9e-22  Score=169.50  Aligned_cols=273  Identities=13%  Similarity=0.128  Sum_probs=177.9

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCC----CcEEEEeccc--Cce--eeEeeecCccEEEEEEeCCCCeEEEEc-CCCeEEE
Q 017194           14 HKATATCCIASRDRPGFVASSGED----GCICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKS   84 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d----~~i~iw~~~~--~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d~~i~i   84 (375)
                      +......++|+|+ +++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.+.+
T Consensus        48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            5677788999999 8888888775    7999999876  332  3333335566777887  788777766 5789999


Q ss_pred             EECCCCCcccccccc---c--------CCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCcee------e------ee
Q 017194           85 FDVHMPASWRPLESY---N--------YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCL------Y------KS  140 (375)
Q Consensus        85 wd~~~~~~~~~~~~~---~--------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~------~~  140 (375)
                      |++........+...   .        .+...+.+++|+|+++++++++ .++.|.+|++.....      +      ..
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            999754433322211   1        1123457899999999776655 578999998875431      1      12


Q ss_pred             EecCcccceeEEEEeeCCCcEEEEee-cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC
Q 017194          141 LRAGHSSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT  219 (375)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  219 (375)
                      +...+...+..++|+|+++ ++++++ .++.|.+||+.+++..........        ..+......++|+|      +
T Consensus       205 ~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~--------~~~~~~~~~i~~sp------d  269 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDGK-FAYLINEIGGTVIAFRYADGMLDEIQTVAAD--------TVNAQGSGDIHLSP------D  269 (361)
T ss_dssp             EECCTTCCEEEEEECTTSS-EEEEEETTTCEEEEEEEETTEEEEEEEEESC--------SSCCCCEEEEEECT------T
T ss_pred             eecCCCCCCeEEEEcCCCC-EEEEEcCCCCeEEEEEecCCceEEeEEEecC--------CCCCCCcccEEECC------C
Confidence            2213455678999999998 455544 789999999987654222211100        00123457999999      8


Q ss_pred             CCEEEEEecC--CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194          220 NKICVVAKGD--GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  297 (375)
Q Consensus       220 ~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (375)
                      +++|+++..+  +.|.+|++...                                    ......+..+.. ...+..++
T Consensus       270 g~~l~v~~~~~~~~i~v~~~~~~------------------------------------~g~~~~~~~~~~-g~~~~~~~  312 (361)
T 3scy_A          270 GKYLYASNRLKADGVAIFKVDET------------------------------------NGTLTKVGYQLT-GIHPRNFI  312 (361)
T ss_dssp             SSEEEEEECSSSCEEEEEEECTT------------------------------------TCCEEEEEEEEC-SSCCCEEE
T ss_pred             CCEEEEECCCCCCEEEEEEEcCC------------------------------------CCcEEEeeEecC-CCCCceEE
Confidence            9988777654  89999998621                                    001122223333 45677899


Q ss_pred             EeecCCCCcEEEEec-CCCeEEEEeCC--Cceeeeecchhhhhhhh-cccccceeeeeec
Q 017194          298 FSMFGERGKYLISGG-NDKLVKVWDCS--RFQGVQTSINNDLLIKN-INLNKKVNWLCTT  353 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~  353 (375)
                      |+   |+|++|++++ .++.|.+|++.  +++         +.... ..+...+.|++|.
T Consensus       313 ~s---pdg~~l~~~~~~~~~v~v~~~d~~~g~---------~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          313 IT---PNGKYLLVACRDTNVIQIFERDQATGL---------LTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EC---TTSCEEEEEETTTTEEEEEEECTTTCC---------EEECSCCEECSSEEEEEEE
T ss_pred             EC---CCCCEEEEEECCCCCEEEEEEECCCCc---------EeecceeeeCCCCeEEEEc
Confidence            99   9999888776 67899996554  552         21111 2234567777774

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=2.8e-23  Score=191.92  Aligned_cols=293  Identities=13%  Similarity=0.065  Sum_probs=192.3

Q ss_pred             CCCCCeeeecCCC---ceeEEEEecCCCCEEEEeCCC---------CcEEEEecccCceeeEee---ecCccEEEEEEeC
Q 017194            4 AEAKPRRLRGHKA---TATCCIASRDRPGFVASSGED---------GCICWFDLRSKDVQLVTD---VGNGPVTSLCFKS   68 (375)
Q Consensus         4 ~~~~~~~l~~h~~---~i~~~~~~~~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~---~~~~~v~~l~~~~   68 (375)
                      +++....+.+|..   .|.+++|+|| +++|++++.+         +.|.+||+.+++. ..+.   .|...+..++|+|
T Consensus        46 ~g~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP  123 (723)
T 1xfd_A           46 TNTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP  123 (723)
T ss_dssp             GCCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS
T ss_pred             CCcEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC
Confidence            4455556666665   4999999999 8999988764         7888999998876 3333   3445588999999


Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCc------------------ceeEEEEcCCCCeEEEEeCCC-----
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE------------------EINQIVCNPKSSFLACADDGG-----  125 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg-----  125 (375)
                      ||+.|++++. +.|++||+.+++.......   +..                  .+.+++|+|||++|++++.++     
T Consensus       124 dG~~la~~~~-~~i~~~~~~~g~~~~~~~~---~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~  199 (723)
T 1xfd_A          124 KGQQLIFIFE-NNIYYCAHVGKQAIRVVST---GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPI  199 (723)
T ss_dssp             STTCEEEEET-TEEEEESSSSSCCEEEECC---CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred             CCCEEEEEEC-CeEEEEECCCCceEEEecC---CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccce
Confidence            9999999885 7999999987654332221   122                  237899999999999887543     


Q ss_pred             -----------------------------cEEEEeCcCceeeeeEecCc------ccceeEEEEeeCCCcEEEEeec---
Q 017194          126 -----------------------------DVKIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEVISGGL---  167 (375)
Q Consensus       126 -----------------------------~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~---  167 (375)
                                                   .|++||+.+++....+. .+      ...+..++|+|+|+ ++++...   
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~  277 (723)
T 1xfd_A          200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM-PPDDPRMREYYITMVKWATSTK-VAVTWLNRAQ  277 (723)
T ss_dssp             EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC-CCCCGGGSSEEEEEEEESSSSE-EEEEEEETTS
T ss_pred             EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee-CCccCCCccceeEEEEEeCCCe-EEEEEEcCCC
Confidence                                         79999998887655555 43      56889999999998 5655543   


Q ss_pred             -CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce----eEEeecCCccccCCCCEEEEE--ecCC------cEEE
Q 017194          168 -DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV----HAIAIPDADMLDKTNKICVVA--KGDG------VVDV  234 (375)
Q Consensus       168 -d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~l~~~--~~dg------~i~i  234 (375)
                       +..|++||+.+++....+...            +...+    ..++|+|      +|+.|+..  ..++      .|.+
T Consensus       278 ~~~~i~~~d~~~g~~~~~~~~~------------~~~~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~l~~  339 (723)
T 1xfd_A          278 NVSILTLCDATTGVCTKKHEDE------------SEAWLHRQNEEPVFSK------DGRKFFFIRAIPQGGRGKFYHITV  339 (723)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEE------------CSSCCCCCCCCCEECT------TSCSEEEEEEECCSSSSCEEEEEE
T ss_pred             CeEEEEEEeCCCCcceEEEEec------------cCCEEeccCCCceEcC------CCCeEEEEEecccCCCcceeEEEE
Confidence             357999999988876655422            12233    3778998      78877754  4566      5777


Q ss_pred             Ee-CCCcce--eecccccCCCCCCceeecccccceeeeeeee---------cCCcceeEeeeeecC---CCccEEEEEEe
Q 017194          235 IN-IESELN--ISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---------QSGGKRLHLDYSVGG---HTAAASCVAFS  299 (375)
Q Consensus       235 ~d-~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~---~~~~v~~~~~s  299 (375)
                      || ..++..  ..............++|+|||+.+++.+..+         ...... .....+..   |...+..++|+
T Consensus       340 ~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~s  418 (723)
T 1xfd_A          340 SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-FNRQCLSCDLVENCTYFSASFS  418 (723)
T ss_dssp             ECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-CCCBCSSTTSSSSCCCCEEEEC
T ss_pred             EeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC-CCcceecccccCCCCeEEEEEC
Confidence            77 343330  2222211111122358999999987643221         110000 01112332   56678899999


Q ss_pred             ecCCCCcEEEEecC-CC--eEEEEeCCCce
Q 017194          300 MFGERGKYLISGGN-DK--LVKVWDCSRFQ  326 (375)
Q Consensus       300 ~~~~~~~~l~s~~~-dg--~i~iwd~~~~~  326 (375)
                         |||++|+.... .+  ...+++..++.
T Consensus       419 ---pdg~~l~~~~~~~~~p~~~~~~~~~~~  445 (723)
T 1xfd_A          419 ---HSMDFFLLKCEGPGVPMVTVHNTTDKK  445 (723)
T ss_dssp             ---TTSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred             ---CCCCEEEEEccCCCCCeEEEEECCCCC
Confidence               99998876432 22  23445654444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=2.1e-23  Score=187.73  Aligned_cols=232  Identities=10%  Similarity=-0.019  Sum_probs=172.4

Q ss_pred             CccEEEEEEeCCCCeEEEEcC-CCeEEEEECCCCCcccccccccCCC-cceeEEEEcCCCCeEEEEeC---CCcEEEEeC
Q 017194           58 NGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNK-EEINQIVCNPKSSFLACADD---GGDVKIIDI  132 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~  132 (375)
                      ..+|.+++|+|||+.|++++. |++++||++.+++. ..+   ..+. ..+..++|+|| +.+++++.   +....+|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~l---t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKL---NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EEC---CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eee---ecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            568999999999999999887 99999999865432 222   2233 58999999999 77777764   454566554


Q ss_pred             cC---ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          133 RQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       133 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      ..   +... .+.  ....+...+|+|+++.++++.+.++.+.+||+.+++.......              +.  .+++
T Consensus        96 ~~~~~g~~~-~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~--------------~~--~~~~  156 (582)
T 3o4h_A           96 NTSRPGEEQ-RLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL--------------PG--FGFV  156 (582)
T ss_dssp             ETTSTTCCE-ECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE--------------SS--CEEE
T ss_pred             eccCCCccc-ccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC--------------CC--ceEE
Confidence            33   2222 333  2223456789999875555555555666999998866554432              12  7889


Q ss_pred             ecCCccccCCCCEEEEEecC----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          210 IPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                      |+|      ||++++.++.+    +.|++||+.+++                                         ...
T Consensus       157 ~sp------DG~~la~~~~~~~~~~~i~~~d~~~g~-----------------------------------------~~~  189 (582)
T 3o4h_A          157 SDI------RGDLIAGLGFFGGGRVSLFTSNLSSGG-----------------------------------------LRV  189 (582)
T ss_dssp             EEE------ETTEEEEEEEEETTEEEEEEEETTTCC-----------------------------------------CEE
T ss_pred             ECC------CCCEEEEEEEcCCCCeEEEEEcCCCCC-----------------------------------------ceE
Confidence            999      89999988876    789999998742                                         125


Q ss_pred             ecCCCccEEEEEEeecCCCCcEEEEecCCC--eEEEEeCCCceeeeecchhhhhhhhcccccceeeee--------ecCC
Q 017194          286 VGGHTAAASCVAFSMFGERGKYLISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC--------TTPT  355 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~  355 (375)
                      +..|...+..++||   |||++|+++..++  .|++||+.+++         .. .+.+|...+..++        |+| 
T Consensus       190 l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~i~~~d~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~sp-  255 (582)
T 3o4h_A          190 FDSGEGSFSSASIS---PGMKVTAGLETAREARLVTVDPRDGS---------VE-DLELPSKDFSSYRPTAITWLGYLP-  255 (582)
T ss_dssp             ECCSSCEEEEEEEC---TTSCEEEEEECSSCEEEEEECTTTCC---------EE-ECCCSCSHHHHHCCSEEEEEEECT-
T ss_pred             eecCCCccccceEC---CCCCEEEEccCCCeeEEEEEcCCCCc---------EE-EccCCCcChhhhhhccccceeEcC-
Confidence            56778889999999   9999999888888  89999999873         33 4556666666677        999 


Q ss_pred             CCCcEEEeeCCCeEEEEec
Q 017194          356 ESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       356 ~~~~l~s~~~dg~v~iw~~  374 (375)
                      ||.++++++.|+.+++|++
T Consensus       256 dg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          256 DGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TSCEEEEEEETTEEEEEET
T ss_pred             CCcEEEEEEcCCcEEEEEE
Confidence            8888899999999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=5.6e-22  Score=170.91  Aligned_cols=160  Identities=16%  Similarity=0.104  Sum_probs=128.1

Q ss_pred             CCCceeEEEEecCCCCEEE----EeCCCCcEEEEecccC--------ce---eeEeeecCccEEEEEEeCC-CCeEEEEc
Q 017194           14 HKATATCCIASRDRPGFVA----SSGEDGCICWFDLRSK--------DV---QLVTDVGNGPVTSLCFKSG-NEDIIYVS   77 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~----s~~~d~~i~iw~~~~~--------~~---~~~~~~~~~~v~~l~~~~~-~~~l~~~~   77 (375)
                      |.+.|++++|+|+ +++|+    +|+.|++|+|||+.++        +.   ...+.+|...|.+++|+|+ +.+|++++
T Consensus        91 ~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           91 MKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             CCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            5678999999999 88988    8999999999998765        22   3455679999999999998 78999999


Q ss_pred             CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc-------cccee
Q 017194           78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-------SSICS  150 (375)
Q Consensus        78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~v~  150 (375)
                      .||+|++||++++..   +....+|...|.+++|+|++++|++|+.||.|++||++ ++....+. .|       ...|.
T Consensus       170 ~Dg~v~iwD~~~~~~---~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~-~~~~~~~~~~~~v~  244 (434)
T 2oit_A          170 ADGSIAVLQVTETVK---VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP-CPPFYESDHPVRVL  244 (434)
T ss_dssp             TTSCEEEEEESSSEE---EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC-CCTTCCTTSCEEEE
T ss_pred             CCCeEEEEEcCCCcc---eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc-CCcccCCCCceeEE
Confidence            999999999987532   23334578899999999999999999999999999998 55555554 33       33899


Q ss_pred             EEEEeeCCCcEEEEeecCC------eEEEeeCCCC
Q 017194          151 SVQFIPWKPWEVISGGLDS------KLVMWDFSKG  179 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~  179 (375)
                      +++|++++.++++....+|      .+++|++++.
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999998763333344443      3899999865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=1.9e-21  Score=164.54  Aligned_cols=280  Identities=13%  Similarity=0.090  Sum_probs=179.1

Q ss_pred             EEEeCC--CCcEEEEec--ccCceeeE--ee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC-CCCcccccccccCC
Q 017194           31 VASSGE--DGCICWFDL--RSKDVQLV--TD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH-MPASWRPLESYNYN  102 (375)
Q Consensus        31 l~s~~~--d~~i~iw~~--~~~~~~~~--~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~  102 (375)
                      ++.|+.  ++.|.+|++  .+++....  .. .....+..++|+|++++|++++.+ .|.+|++. +++... +.....+
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~   82 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC
Confidence            444443  246777765  34543221  11 133468899999999999988877 99999986 554322 2121111


Q ss_pred             CcceeEEEEcCCCCe--EEEEe-------------CCCcEEEEeCc-CceeeeeEec---CcccceeEEEEeeCCCcEEE
Q 017194          103 KEEINQIVCNPKSSF--LACAD-------------DGGDVKIIDIR-QHCLYKSLRA---GHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~  163 (375)
                       +.+..++|+|++++  ++++.             .++.+.+|++. +++....+..   .+...+.+++|+|+|+ .++
T Consensus        83 -g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~  160 (365)
T 1jof_A           83 -GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLY  160 (365)
T ss_dssp             -SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEE
T ss_pred             -CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEE
Confidence             23567899999984  44543             68999999997 4555433330   1456789999999998 465


Q ss_pred             Eee-cCCeEEEeeCC-CCCcce--EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCC
Q 017194          164 SGG-LDSKLVMWDFS-KGRPNK--IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIE  238 (375)
Q Consensus       164 ~~~-~d~~i~~wd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~  238 (375)
                      ++. .++.|++||+. +++...  .+....           +...+..++|+|      +++++++++. ++.|.+|++.
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-----------~g~~p~~~~~sp------dg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPD-----------PGDHPRWVAMHP------TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSS-----------TTCCEEEEEECT------TSSEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCC-----------CCCCCCEeEECC------CCCEEEEEECCCCeEEEEEEe
Confidence            554 46899999998 665432  222110           134688999999      8998888775 6899999875


Q ss_pred             --CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee----cCCCc------cEEEEE-EeecCCCC
Q 017194          239 --SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV----GGHTA------AASCVA-FSMFGERG  305 (375)
Q Consensus       239 --~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------~v~~~~-~s~~~~~~  305 (375)
                        +++....                                  .+.+..+    .+|..      .+..++ |+   |||
T Consensus       224 ~~~g~~~~~----------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s---pdG  266 (365)
T 1jof_A          224 PATHMPVYT----------------------------------HHSFPLIPPGIPDRDPETGKGLYRADVCALT---FSG  266 (365)
T ss_dssp             TTTCCEEEE----------------------------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---TTS
T ss_pred             CCCCcEEEc----------------------------------cceEEcCCCCcCCcccccccccccccEEEEC---CCC
Confidence              2221100                                  0011111    12222      588999 99   999


Q ss_pred             cEEEEecCC-C-----eEEEEeCC-CceeeeecchhhhhhhhcccccceeeeeecCC--CCCcEEEeeC-CCeEEEEec
Q 017194          306 KYLISGGND-K-----LVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPT--ESENLVVCDT-SKVVKVYSI  374 (375)
Q Consensus       306 ~~l~s~~~d-g-----~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~-dg~v~iw~~  374 (375)
                      ++|++++.+ +     .|.+|++. +++..      ........+...+..++|+|.  +|++|++++. ++.|.+|++
T Consensus       267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          267 KYMFASSRANKFELQGYIAGFKLRDCGSIE------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             SEEEEEEEESSTTSCCEEEEEEECTTSCEE------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CEEEEECCCCCCCCCCeEEEEEECCCCCEE------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            988876543 2     89999996 44211      000012224455678899985  6889998876 489999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=3.4e-21  Score=162.99  Aligned_cols=261  Identities=8%  Similarity=0.046  Sum_probs=169.9

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecc-cCceeeEeeec-CccEEEEEEeCCCCe--EEEEc-------------
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTDVG-NGPVTSLCFKSGNED--IIYVS-------------   77 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~-~~~v~~l~~~~~~~~--l~~~~-------------   77 (375)
                      ...+..++|+|+ +++|++++.+ .|.+|++. +++........ .+.+..++|+|+|++  ++++.             
T Consensus        39 ~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            346888999999 8888888877 99999997 77654433211 123556899999995  44543             


Q ss_pred             CCCeEEEEECCC-CCccccccccc-CCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCc-Cceee--eeEec-Cccccee
Q 017194           78 SGKEVKSFDVHM-PASWRPLESYN-YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIR-QHCLY--KSLRA-GHSSICS  150 (375)
Q Consensus        78 ~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~--~~~~~-~~~~~v~  150 (375)
                      .++.+.+|++.. ++....+..+. .+...+.+++|+|+|++++++. .++.|++||+. +++..  ..+.. .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            588999999974 43322233221 1346789999999999888776 46799999998 66543  23331 1356789


Q ss_pred             EEEEeeCCCcEEEEee-cCCeEEEeeCC--CCCcce---EEecCCCCC-CCCCCcccCCCceeEEe-ecCCccccCCCCE
Q 017194          151 SVQFIPWKPWEVISGG-LDSKLVMWDFS--KGRPNK---IVNFGLPEN-NGNAGQCYNPAFVHAIA-IPDADMLDKTNKI  222 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~-~d~~i~~wd~~--~~~~~~---~~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~  222 (375)
                      .++|+|+|+ .+++++ .++.|.+|++.  +++...   .+..- +.. .......-....+..++ |+|      ++++
T Consensus       197 ~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~i~~~sp------dG~~  268 (365)
T 1jof_A          197 WVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI-PPGIPDRDPETGKGLYRADVCALTF------SGKY  268 (365)
T ss_dssp             EEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS-CTTCCCBCTTTSSBSEEEEEEEECT------TSSE
T ss_pred             EeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC-CCCcCCcccccccccccccEEEECC------CCCE
Confidence            999999998 455555 57899999875  454322   22211 000 00000000001578899 999      8998


Q ss_pred             EEEEecC-C-----cEEEEeCC-CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEE
Q 017194          223 CVVAKGD-G-----VVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC  295 (375)
Q Consensus       223 l~~~~~d-g-----~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  295 (375)
                      |++++.+ +     .|.+|++. +++..                                     ........+...+..
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~-------------------------------------~~~~~~~~~~~~~~~  311 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIE-------------------------------------KQLFLSPTPTSGGHS  311 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEE-------------------------------------EEEEEEECSSCCTTC
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEE-------------------------------------EeeeeeecCCCCccc
Confidence            8877643 2     89999986 32110                                     100012223344567


Q ss_pred             EEEeecCC---CCcEEEEecCC-CeEEEEeCCCc
Q 017194          296 VAFSMFGE---RGKYLISGGND-KLVKVWDCSRF  325 (375)
Q Consensus       296 ~~~s~~~~---~~~~l~s~~~d-g~i~iwd~~~~  325 (375)
                      ++|+   |   ||++|++++.+ +.|.+|++...
T Consensus       312 ~a~s---p~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          312 NAVS---PCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCEE---ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ceec---CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            8899   8   89999988864 89999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.89  E-value=4e-22  Score=170.87  Aligned_cols=290  Identities=12%  Similarity=0.049  Sum_probs=186.6

Q ss_pred             cCCCCCeeeecCCCc-----eeEEEEecCCCCEEEEeCC---CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEE
Q 017194            3 DAEAKPRRLRGHKAT-----ATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII   74 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~-----i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~   74 (375)
                      .+++.+..+..+...     +.+++|+|+ |++|+....   +..|.+||+.+++.......+......+.|+|+|++|+
T Consensus        18 ~~g~~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~   96 (396)
T 3c5m_A           18 DTQVKVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFF   96 (396)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEE
T ss_pred             CCCcceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEE
Confidence            455556667665444     788899999 787766543   24688889988775444333333233478999999999


Q ss_pred             EEcCCCeEEEEECCCCCcccccccccCCCcceeE-------------------EEEcCCCCeEEEE-----eCCCcEEEE
Q 017194           75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ-------------------IVCNPKSSFLACA-----DDGGDVKII  130 (375)
Q Consensus        75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~iw  130 (375)
                      .++.++.|++||+.+++..... ..  +......                   +.|+|+++.++..     ..+..|++|
T Consensus        97 ~~~~~~~l~~~d~~~~~~~~~~-~~--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEEQVIY-TV--DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEETTTEEEEEETTTCCEEEEE-EC--CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEcCCcEEEEECCCCCcEEEE-ec--ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999876532222 11  1121111                   3567888776654     356689999


Q ss_pred             eCcCceeeeeEecCcccceeEEEEee-CCCcEEEEeecC------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCC
Q 017194          131 DIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA  203 (375)
Q Consensus       131 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (375)
                      |+.+++......  +...+..+.|+| ++. .|+..+.+      ..|.+||+..++.. .+....           ...
T Consensus       174 d~~~g~~~~~~~--~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~-----------~~~  238 (396)
T 3c5m_A          174 DIETGELEVIHQ--DTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA-----------EGE  238 (396)
T ss_dssp             ETTTCCEEEEEE--ESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC-----------TTE
T ss_pred             ECCCCcEEeecc--CCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCcee-EeeccC-----------CCc
Confidence            998877655443  667789999999 676 45554433      46888888755432 221110           023


Q ss_pred             ceeEEeecCCccccCCCCEEEEEecC-----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcc
Q 017194          204 FVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK  278 (375)
Q Consensus       204 ~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~  278 (375)
                      .+..++|+|      +++.|+.++.+     +.|++||+.+++..                                   
T Consensus       239 ~~~~~~~sp------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-----------------------------------  277 (396)
T 3c5m_A          239 SCTHEFWIP------DGSAMAYVSYFKGQTDRVIYKANPETLENE-----------------------------------  277 (396)
T ss_dssp             EEEEEEECT------TSSCEEEEEEETTTCCEEEEEECTTTCCEE-----------------------------------
T ss_pred             cccceEECC------CCCEEEEEecCCCCccceEEEEECCCCCeE-----------------------------------
Confidence            577889999      79887776543     44999999864211                                   


Q ss_pred             eeEeeeeecCCCccEEEEEEeecCC-CCcEEEEec----------------CCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194          279 RLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGG----------------NDKLVKVWDCSRFQGVQTSINNDLLIKNI  341 (375)
Q Consensus       279 ~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  341 (375)
                         .+..+.+    .. +.|+   | ||+++++++                .++.|++||+.+++.          ..+.
T Consensus       278 ---~l~~~~~----~~-~~~s---~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~  336 (396)
T 3c5m_A          278 ---EVMVMPP----CS-HLMS---NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA----------QKLC  336 (396)
T ss_dssp             ---EEEECCS----EE-EEEE---CSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC----------CEEE
T ss_pred             ---EeeeCCC----CC-CCcc---CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce----------EEcc
Confidence               1112221    22 7888   7 999888754                347899999988632          1223


Q ss_pred             cccc-----------ceeeeeecCCCCCcEEEeeC-CCeEEEEec
Q 017194          342 NLNK-----------KVNWLCTTPTESENLVVCDT-SKVVKVYSI  374 (375)
Q Consensus       342 ~~~~-----------~v~~~~~~~~~~~~l~s~~~-dg~v~iw~~  374 (375)
                      .+..           .+..++|+| +|+.|+.++. ++...+|.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          337 KHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             ECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             CCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEE
Confidence            3333           256678999 8988877664 565556543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.88  E-value=1.3e-20  Score=158.56  Aligned_cols=272  Identities=11%  Similarity=0.046  Sum_probs=182.5

Q ss_pred             CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC----------CCeEEEEECCCCCcccccccccC---C
Q 017194           36 EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY---N  102 (375)
Q Consensus        36 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~---~  102 (375)
                      .|+.|.+||..+++.+..+..+..+  .++|+|++++++++..          ++.|.+||..+.+....+.....   +
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            3679999999999988888776555  8999999999988862          56899999987665544443211   1


Q ss_pred             CcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeee-EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC-
Q 017194          103 KEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-  178 (375)
Q Consensus       103 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-  178 (375)
                      ......++++|++++|+++..  ++.|.+||+.+++.+.. +.  .. ....+.+.|+++..+++.+.||.+.+|++.. 
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence            245678999999999998874  57899999999988877 54  22 2233667888755788899999999999875 


Q ss_pred             CCcceEEecCCCCCCCCCCcccC-CCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYN-PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  257 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      ++........         ..++ ......+.++|      ++..++..+.++.+.++|+..........          
T Consensus       184 g~~~~~~~~~---------~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~v~v~d~~~~~~~~~~~----------  238 (361)
T 2oiz_A          184 GKVASQSRSK---------QMFSVKDDPIFIAPAL------DKDKAHFVSYYGNVYSADFSGDEVKVDGP----------  238 (361)
T ss_dssp             SSEEEEEECC---------CCSCTTTSCBCSCCEE------CSSEEEEEBTTSEEEEEECSSSSCEEEEE----------
T ss_pred             CcEeeecccc---------ceEcCCCCceEEEecc------cCCEEEEEeCCCeEEEEEecCCCceeccc----------
Confidence            4433222100         0000 01111223344      57777777888999999987532110000          


Q ss_pred             eecccccceeeeeeeecCCcceeEeee--eecC--CCccEEEEEEeecCCCCcEEEEecC-----------CCeEEEEeC
Q 017194          258 STSKVNIRDAEMEILDQSGGKRLHLDY--SVGG--HTAAASCVAFSMFGERGKYLISGGN-----------DKLVKVWDC  322 (375)
Q Consensus       258 ~~s~~g~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~v~~~~~s~~~~~~~~l~s~~~-----------dg~i~iwd~  322 (375)
                                            .....  ....  .......++|+   |+++.++++..           .+.|.+||+
T Consensus       239 ----------------------~~~~~~~~~~~~~~p~g~~~~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          239 ----------------------WSLLNDEDKAKNWVPGGYNLVGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             ----------------------EESCCHHHHHTTCEECCSSCEEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             ----------------------ccccCccccccccccCCeeEEEEe---cCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence                                  00000  0000  00111226788   88777666532           358999999


Q ss_pred             CCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          323 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      .+.         +.+..+..+.  +..++|+| ||++|++++. +.|.+||.+
T Consensus       294 ~t~---------~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          294 KTK---------QRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             TTT---------EEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECS
T ss_pred             CCC---------cEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECC
Confidence            998         4445555555  89999999 9999998887 999999963

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=5.8e-21  Score=176.31  Aligned_cols=207  Identities=9%  Similarity=0.084  Sum_probs=142.6

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCcc-----EEEEEEeCCCCeEEEEcCC---------C
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-----VTSLCFKSGNEDIIYVSSG---------K   80 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~l~~~~~d---------~   80 (375)
                      .....++.|+|+ +++++++  |++|++||+.+++....+..|...     ...+.|||||++|+.++.+         +
T Consensus        16 ~~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           16 RLKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            344668999999 7888886  899999999999987777776532     2447899999999998875         5


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce-----------
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----------  149 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------  149 (375)
                      .+.+||+.+++.. .   +..+...+..++|||||+.||.+. ++.|++||+.+++..+.-..++...+           
T Consensus        93 ~~~~~d~~~~~~~-~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-T---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEEEEETTTTEEC-C---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             EEEEEECCCCcEE-E---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence            6779999986532 2   333467899999999999999884 68999999987765432111222222           


Q ss_pred             ------eEEEEeeCCCcEEEEeecC-C-----------------------------------eEEEeeCCC---CCcceE
Q 017194          150 ------SSVQFIPWKPWEVISGGLD-S-----------------------------------KLVMWDFSK---GRPNKI  184 (375)
Q Consensus       150 ------~~~~~~~~~~~~l~~~~~d-~-----------------------------------~i~~wd~~~---~~~~~~  184 (375)
                            ..+.|+|||+ .|+.++.| +                                   +|++||+.+   ++.+..
T Consensus       168 e~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             hhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                  3589999999 56665432 2                                   466777776   532121


Q ss_pred             EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec----CCcEEEEeCCCcc
Q 017194          185 VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESEL  241 (375)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~  241 (375)
                      .....+.     ....+...+..++|+|      |+++++....    +..|.+||+.+++
T Consensus       247 ~~l~~~~-----~~~~~~~~~~~~~wsp------dg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          247 IQITAPA-----SMLIGDHYLCDVTWAT------QERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEECCCH-----HHHTSCEEEEEEEEEE------TTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEecCCc-----cCCCCCeEEEEEEEeC------CCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            1111000     0000345688999999      7887665543    2379999998753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.88  E-value=2.1e-19  Score=149.65  Aligned_cols=257  Identities=11%  Similarity=0.039  Sum_probs=185.5

Q ss_pred             CCceeEEEEecCCCCEEEEeCCC------------------------CcEEEEecccCceeeEee-ecCccEEEEEEeCC
Q 017194           15 KATATCCIASRDRPGFVASSGED------------------------GCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSG   69 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d------------------------~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~   69 (375)
                      -+.+.+++++|+ ++++++...+                        +.|.+||..+++.+..+. .+-.....++++|+
T Consensus        23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            467999999999 8888888777                        479999999888766554 33457899999999


Q ss_pred             CCeEEEEcCCCeEEEEECCCCC-cccccccc------cCCCcceeEEEEcC-CCCeEEEEe-CCCcEEEEeCcCceeeee
Q 017194           70 NEDIIYVSSGKEVKSFDVHMPA-SWRPLESY------NYNKEEINQIVCNP-KSSFLACAD-DGGDVKIIDIRQHCLYKS  140 (375)
Q Consensus        70 ~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~  140 (375)
                      |+.+++...++.|++|+..... ....+...      ..+......++++| ++.++++.+ .++.|++|| .+++.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9988888888999999986431 12212110      22334688999999 787777775 689999999 46666666


Q ss_pred             Eec---------CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeec
Q 017194          141 LRA---------GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP  211 (375)
Q Consensus       141 ~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (375)
                      +..         ++-.....++++|++..++++...++.|++||..+++.+..+....           ....+..++++
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~-----------~~~~~~~~~~~  249 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS-----------FGRNVFAISYI  249 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-----------TTTCEEEEEEE
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-----------cCCCcceeeec
Confidence            640         1223488999999944377888889999999999888887775321           23467788888


Q ss_pred             CCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc
Q 017194          212 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA  291 (375)
Q Consensus       212 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (375)
                      |...+..+++..++...+..|++||..+++...                                     .+....++..
T Consensus       250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~-------------------------------------~~~~~~~~~~  292 (329)
T 3fvz_A          250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID-------------------------------------VFKPVRKHFD  292 (329)
T ss_dssp             TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE-------------------------------------EECCSSSCCS
T ss_pred             CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE-------------------------------------EEcCCCCccC
Confidence            733333344444444556689999988753221                                     1111235566


Q ss_pred             cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          292 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       292 ~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      .+..++++   |+|.++++...++.|++|++..
T Consensus       293 ~p~~ia~~---~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          293 MPHDIVAS---EDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEEC---TTSEEEEEESSSCCEEEEEEEE
T ss_pred             CeeEEEEC---CCCCEEEEECCCCEEEEEeCCc
Confidence            78999999   9998899999999999999865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=1.6e-20  Score=157.98  Aligned_cols=212  Identities=10%  Similarity=0.096  Sum_probs=159.1

Q ss_pred             CCCCCeeeecCC-CceeEEEEecCCCCE-EEEeCCCCcEEEEecccCceeeEeeecC------ccEEEEEEeCCCCeEEE
Q 017194            4 AEAKPRRLRGHK-ATATCCIASRDRPGF-VASSGEDGCICWFDLRSKDVQLVTDVGN------GPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         4 ~~~~~~~l~~h~-~~i~~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~~   75 (375)
                      +++.++.+..+. ..+..++|+|+ +++ ++++..++.|.+||+.+++....+..+.      ..+..++|+|+|+++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  108 (349)
T 1jmx_B           30 SDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA  108 (349)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred             CCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEE
Confidence            344455565443 25788999999 664 5566778999999999998877776432      33788999999999998


Q ss_pred             EcCC------------CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec
Q 017194           76 VSSG------------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA  143 (375)
Q Consensus        76 ~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (375)
                      ++.+            +.|.+||+.+++....+..... ...+.+++|+|+++ +++++  +.|.+||+.+++.+..+. 
T Consensus       109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~-  183 (349)
T 1jmx_B          109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALP-  183 (349)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEEC-
T ss_pred             EcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceecccc-
Confidence            8865            8999999987654444444433 34688999999999 66654  349999999887766654 


Q ss_pred             Ccc--------------------------------------------------------------------cceeEEEEe
Q 017194          144 GHS--------------------------------------------------------------------SICSSVQFI  155 (375)
Q Consensus       144 ~~~--------------------------------------------------------------------~~v~~~~~~  155 (375)
                      .+.                                                                    ..+..++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  263 (349)
T 1jmx_B          184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS  263 (349)
T ss_dssp             STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec
Confidence            221                                                                    134566778


Q ss_pred             e-CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          156 P-WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       156 ~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                      | +++ .++++  ++.|.+||+.+++.+..+..+              ..+..++|+|      ++++|++++.++.|.+
T Consensus       264 p~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~------dg~~l~~~~~~~~v~v  320 (349)
T 1jmx_B          264 PKDPN-QIYGV--LNRLAKYDLKQRKLIKAANLD--------------HTYYCVAFDK------KGDKLYLGGTFNDLAV  320 (349)
T ss_dssp             SSCTT-EEEEE--ESEEEEEETTTTEEEEEEECS--------------SCCCEEEECS------SSSCEEEESBSSEEEE
T ss_pred             CCCCC-EEEEE--cCeEEEEECccCeEEEEEcCC--------------CCccceEECC------CCCEEEEecCCCeEEE
Confidence            9 888 56666  889999999999888777643              4567899999      7888888888999999


Q ss_pred             EeCCCcceee
Q 017194          235 INIESELNIS  244 (375)
Q Consensus       235 ~d~~~~~~~~  244 (375)
                      ||+.+.+...
T Consensus       321 ~d~~~~~~~~  330 (349)
T 1jmx_B          321 FNPDTLEKVK  330 (349)
T ss_dssp             EETTTTEEEE
T ss_pred             Eeccccceee
Confidence            9999865443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.88  E-value=1.2e-20  Score=172.60  Aligned_cols=296  Identities=10%  Similarity=0.052  Sum_probs=190.6

Q ss_pred             CeeeecCCCceeEEEEecCCCCEEEEe--CCCCcEEEEecccCceeeEeeecCccEE---------EEEEe--CCCCe-E
Q 017194            8 PRRLRGHKATATCCIASRDRPGFVASS--GEDGCICWFDLRSKDVQLVTDVGNGPVT---------SLCFK--SGNED-I   73 (375)
Q Consensus         8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~v~---------~l~~~--~~~~~-l   73 (375)
                      ...+.+|...+..++++++ .-++++.  +.++...||....+.....+..+...+.         ...|+  |||+. |
T Consensus        16 ~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HHHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            3456789999999999987 6667776  6688999999655555666766666665         66666  99998 7


Q ss_pred             EEEcC-CCeEEEEECC--C-CCccccccccc--CCCcceeEEEEcCCCCeEEEEeCC----------CcEEEEeCcC---
Q 017194           74 IYVSS-GKEVKSFDVH--M-PASWRPLESYN--YNKEEINQIVCNPKSSFLACADDG----------GDVKIIDIRQ---  134 (375)
Q Consensus        74 ~~~~~-d~~i~iwd~~--~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~---  134 (375)
                      +.++. +..|.++++.  . +. ...+....  .|...+..++|+|||+.|++++.+          ..|++||+.+   
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            76654 4567777765  2 32 23332211  145678899999999999988876          5899999987   


Q ss_pred             ---ceeeeeEecCcccceeEEEEeeCCCcEEEEeecC--------CeEEEeeCC-CCC--cceEEecCCCCCCCCCCccc
Q 017194          135 ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--------SKLVMWDFS-KGR--PNKIVNFGLPENNGNAGQCY  200 (375)
Q Consensus       135 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~-~~~--~~~~~~~~~~~~~~~~~~~~  200 (375)
                         ++...... .+...+..++|+|||+ .|+.++.+        ..|++||+. +++  ....+...            
T Consensus       174 ~~~~~~~~l~~-~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~------------  239 (662)
T 3azo_A          174 ADRSAVRELSD-DAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG------------  239 (662)
T ss_dssp             TCGGGSEESSC-SCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE------------
T ss_pred             ccCCceeEEEe-cCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC------------
Confidence               55443331 2346788899999999 57666644        479999998 462  23333322            


Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCC--cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcc
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK  278 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~  278 (375)
                      +...+..+.|+|      +|+++++++.++  .|.+||+.+++........  .......+                   
T Consensus       240 ~~~~~~~~~~sp------dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~--~~~~~p~w-------------------  292 (662)
T 3azo_A          240 PEEAIAQAEWAP------DGSLIVATDRTGWWNLHRVDPATGAATQLCRRE--EEFAGPLW-------------------  292 (662)
T ss_dssp             TTBCEEEEEECT------TSCEEEEECTTSSCEEEEECTTTCCEEESSCCS--SBSSCCCC-------------------
T ss_pred             CCceEcceEECC------CCeEEEEECCCCCeEEEEEECCCCceeeccccc--ccccCccc-------------------
Confidence            246788999999      788888888888  6666666554322111000  00000000                   


Q ss_pred             eeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE--eCCCceeeeecchhhhhhhhcccccceeee-eecCC
Q 017194          279 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW--DCSRFQGVQTSINNDLLIKNINLNKKVNWL-CTTPT  355 (375)
Q Consensus       279 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~  355 (375)
                                 ...+..++|+   ++++++++++. +.++||  |...++          +..+..|...+..+ ++.+ 
T Consensus       293 -----------~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~s~~~-  346 (662)
T 3azo_A          293 -----------TPGMRWFAPL---ANGLIAVVHGK-GAAVLGILDPESGE----------LVDAAGPWTEWAATLTVSG-  346 (662)
T ss_dssp             -----------STTCCSEEEC---TTSCEEEEEBS-SSCEEEEEETTTTE----------EEECCSSCCEEEEEEEEET-
T ss_pred             -----------cccCceEeEe---CCCEEEEEEEc-CccEEEEEECCCCc----------EEEecCCCCeEEEEEecCC-
Confidence                       0114567888   89999999998 999999  555542          23445566666666 4432 


Q ss_pred             CCCcEEEeeCCCeEEEE
Q 017194          356 ESENLVVCDTSKVVKVY  372 (375)
Q Consensus       356 ~~~~l~s~~~dg~v~iw  372 (375)
                      +.-++++++.+....+|
T Consensus       347 ~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          347 TRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             TEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEcCCCCCCEEE
Confidence            22233344555444444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=2.6e-21  Score=178.62  Aligned_cols=278  Identities=10%  Similarity=0.033  Sum_probs=164.2

Q ss_pred             EEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC---------CCcEEEEeCc
Q 017194           63 SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD---------GGDVKIIDIR  133 (375)
Q Consensus        63 ~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~  133 (375)
                      .++|+|++++ +..+.|+.|++||+.+++....+.........+.+++|+|||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~-~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEY-LHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEE-EEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeE-EEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6899999964 44556999999999987643333221000114899999999999998876         6899999999


Q ss_pred             CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC---------Cc
Q 017194          134 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP---------AF  204 (375)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  204 (375)
                      +++.+....  ....+..++|+|+|+ .|+.+. ++.|++||+.+++.......+...    ....-++         ..
T Consensus        99 ~g~~~~~~~--l~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~----~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           99 NGEFVRGNE--LPRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGREN----KIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             TTEECCSSC--CCSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTT----TEEESSCCHHHHHHTTCS
T ss_pred             CCcccccee--cCcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcC----CeEcccccceeeeecccC
Confidence            887632111  224688999999999 577764 789999999888764322111000    0000001         11


Q ss_pred             eeEEeecCCccccCCCCEEEEEecC-CcEEEEeCCCcceeecccccCCCCCCceeeccccccee--eeeeeecCCcce--
Q 017194          205 VHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA--EMEILDQSGGKR--  279 (375)
Q Consensus       205 v~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~--~~~~~~~~~~~~--  279 (375)
                      ..+++|+|      ||+.|++++.| +.+.+|.+.....      ...+....+.+...|....  ....++......  
T Consensus       171 ~~~~~wSP------DG~~la~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~  238 (719)
T 1z68_A          171 KYALWWSP------NGKFLAYAEFNDTDIPVIAYSYYGD------EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG  238 (719)
T ss_dssp             SCCEEECT------TSSEEEEEEEECTTSCEEEEEECCS------SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred             cccEEECC------CCCEEEEEEECCCCCceEEeeccCC------CCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence            25899999      89999998765 3333332211000      0001111111111111110  011122221111  


Q ss_pred             -eEee--eeecCCCccEEEEEEeecCCCCcEEEEecCC----CeEEEEe----CCCceeeeecchhhhhhhh----cccc
Q 017194          280 -LHLD--YSVGGHTAAASCVAFSMFGERGKYLISGGND----KLVKVWD----CSRFQGVQTSINNDLLIKN----INLN  344 (375)
Q Consensus       280 -~~~~--~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~----~~~~  344 (375)
                       .+..  ..+.+|...+..++|+   ||++++++....    ..|.+||    +.+++         .....    .+|.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~S---pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---------~~~~~~~~~~~~~  306 (719)
T 1z68_A          239 PQEVPVPAMIASSDYYFSWLTWV---TDERVCLQWLKRVQNVSVLSICDFREDWQTWD---------CPKTQEHIEESRT  306 (719)
T ss_dssp             CEECCCCHHHHTSCEEEEEEEES---SSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---------CCGGGEEEEECSS
T ss_pred             eeEccCCccCCCCcceEEEeEEe---CCCeEEEEEeccccCeEEEEEEcccCCCCCCc---------eEEEEecccccCC
Confidence             0110  2345688889999999   898887774322    3588899    77763         33333    3566


Q ss_pred             ccee-----eeeecCCCCCcEEE--eeCCC--eEEEEec
Q 017194          345 KKVN-----WLCTTPTESENLVV--CDTSK--VVKVYSI  374 (375)
Q Consensus       345 ~~v~-----~~~~~~~~~~~l~s--~~~dg--~v~iw~~  374 (375)
                      ..+.     .++|+| ||+.|+.  ...+|  .|.+|++
T Consensus       307 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~  344 (719)
T 1z68_A          307 GWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKD  344 (719)
T ss_dssp             SCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESS
T ss_pred             ceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEEC
Confidence            6666     789999 8886654  44555  4555554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=1.4e-19  Score=152.41  Aligned_cols=280  Identities=9%  Similarity=-0.011  Sum_probs=187.7

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeC----------CCCcEEEEecccCceeeEeeec------CccEEEEEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG------NGPVTSLCF   66 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~------~~~v~~l~~   66 (375)
                      ++++.+.++..+..+  .++|+|+ +++++++.          .+++|.+||..+++.+..+...      ......+++
T Consensus        39 ~t~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~  115 (361)
T 2oiz_A           39 TNGKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQ  115 (361)
T ss_dssp             TTCCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEE
T ss_pred             CCCeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEE
Confidence            355666677766666  8999999 88888775          3678999999999988887643      345678999


Q ss_pred             eCCCCeEEEEcC--CCeEEEEECCCCCcccc-cccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcC-ceeee--
Q 017194           67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRP-LESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQ-HCLYK--  139 (375)
Q Consensus        67 ~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~--  139 (375)
                      +|+|++|+++..  ++.|.+||+.+++.... +..     .....+.+.|++ ..+++.+.||.+.+|++.. ++...  
T Consensus       116 spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-----~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~  190 (361)
T 2oiz_A          116 TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-----AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS  190 (361)
T ss_dssp             CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-----TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred             CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-----CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence            999999998864  57999999998754433 322     122335567765 6778888999999999864 44431  


Q ss_pred             ----eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc--eEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          140 ----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       140 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                          .+. ....+ ..+.+.+++. .++..+.++.|.++|+......  ..+......   .....+.+.....++++| 
T Consensus       191 ~~~~~~~-~~~~~-~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~p~g~~~~a~~~-  263 (361)
T 2oiz_A          191 RSKQMFS-VKDDP-IFIAPALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE---DKAKNWVPGGYNLVGLHR-  263 (361)
T ss_dssp             ECCCCSC-TTTSC-BCSCCEECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH---HHHTTCEECCSSCEEEET-
T ss_pred             cccceEc-CCCCc-eEEEecccCC-EEEEEeCCCeEEEEEecCCCceecccccccCcc---ccccccccCCeeEEEEec-
Confidence                122 22222 2334567776 5666678899999998755422  122211000   000000011122367888 


Q ss_pred             ccccCCCCEEEEEec-----------CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194          214 DMLDKTNKICVVAKG-----------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  282 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~  282 (375)
                           +++.++++..           .+.|.+||+.+.                                        +.
T Consensus       264 -----dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----------------------------------------~~  298 (361)
T 2oiz_A          264 -----ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----------------------------------------QR  298 (361)
T ss_dssp             -----TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----------------------------------------EE
T ss_pred             -----CCCeEEEEEccCCCcccccCCCceEEEEECCCC----------------------------------------cE
Confidence                 7777777653           348999999875                                        34


Q ss_pred             eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc--eeeeecchhhhhhhhcccccceeeeeecCCCCC
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF--QGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  358 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  358 (375)
                      +.++..+.  +.+++|+   |||++|++++. +.|.+||..++  +.         +..+..+......++++| +|.
T Consensus       299 v~~i~~~~--p~~ia~s---pdg~~l~v~n~-~~v~v~D~~t~~l~~---------~~~i~~~G~~P~~~~~~p-~G~  360 (361)
T 2oiz_A          299 VARIPGRD--ALSMTID---QQRNLMLTLDG-GNVNVYDISQPEPKL---------LRTIEGAAEASLQVQFHP-VGG  360 (361)
T ss_dssp             EEEEECTT--CCEEEEE---TTTTEEEEECS-SCEEEEECSSSSCEE---------EEEETTSCSSEEEEEECC-CSC
T ss_pred             EEEEecCC--eeEEEEC---CCCCEEEEeCC-CeEEEEECCCCccee---------eEEeccCCCCcEEEEecC-CCC
Confidence            44555555  8999999   99999998887 99999999997  43         223345666778889998 764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=1.1e-18  Score=142.52  Aligned_cols=241  Identities=10%  Similarity=0.114  Sum_probs=171.5

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc---cCCCcceeEEEE-cCCCCeEEEEeC-CCcEEEEe
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY---NYNKEEINQIVC-NPKSSFLACADD-GGDVKIID  131 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~~l~~~~~-dg~i~iwd  131 (375)
                      +-..+.+++++++++.+++...++.|.+||.. ++....+...   ..+...+..+++ .++++++++... ++.|.+||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            44678899999999988887888999999987 3333222211   123356889999 467766665533 78999999


Q ss_pred             CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeec
Q 017194          132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP  211 (375)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (375)
                       .+++.+..+...+...+.++++.|++. ++++...++.|.+||.. ++.+..+....           ....+..++++
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-----------~~~~p~~i~~~  172 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSK-----------HLEFPNGVVVN  172 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTT-----------TCSSEEEEEEC
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCC-----------ccCCcEEEEEC
Confidence             567776666523445789999999997 77777788999999964 55555554210           22457899999


Q ss_pred             CCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee--cCC
Q 017194          212 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV--GGH  289 (375)
Q Consensus       212 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~  289 (375)
                      |      +++++++...++.|++||....                                         .+..+  .++
T Consensus       173 ~------~g~l~v~~~~~~~i~~~~~~g~-----------------------------------------~~~~~~~~g~  205 (286)
T 1q7f_A          173 D------KQEIFISDNRAHCVKVFNYEGQ-----------------------------------------YLRQIGGEGI  205 (286)
T ss_dssp             S------SSEEEEEEGGGTEEEEEETTCC-----------------------------------------EEEEESCTTT
T ss_pred             C------CCCEEEEECCCCEEEEEcCCCC-----------------------------------------EEEEEccCCc
Confidence            8      7888877778899999997642                                         11122  222


Q ss_pred             CccEEEEEEeecCCCCcEEEEecCCC-eEEEEeCCCceeeeecchhhhhhhhccc--ccceeeeeecCCCCCcEEEeeCC
Q 017194          290 TAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                      ...+..++++   ++|+++++...++ .|.+||....          .+..+..+  ...+.++++.| +|+++++ +.|
T Consensus       206 ~~~p~~i~~d---~~G~l~v~~~~~~~~i~~~~~~g~----------~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~  270 (286)
T 1q7f_A          206 TNYPIGVGIN---SNGEILIADNHNNFNLTIFTQDGQ----------LISALESKVKHAQCFDVALMD-DGSVVLA-SKD  270 (286)
T ss_dssp             SCSEEEEEEC---TTCCEEEEECSSSCEEEEECTTSC----------EEEEEEESSCCSCEEEEEEET-TTEEEEE-ETT
T ss_pred             cCCCcEEEEC---CCCCEEEEeCCCCEEEEEECCCCC----------EEEEEcccCCCCcceeEEECC-CCcEEEE-CCC
Confidence            3567899999   8999988888886 9999996542          22222222  23467899999 8886666 679


Q ss_pred             CeEEEEec
Q 017194          367 KVVKVYSI  374 (375)
Q Consensus       367 g~v~iw~~  374 (375)
                      ++|++|++
T Consensus       271 ~~v~v~~~  278 (286)
T 1q7f_A          271 YRLYIYRY  278 (286)
T ss_dssp             TEEEEEEC
T ss_pred             CeEEEEEc
Confidence            99999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.86  E-value=2.8e-19  Score=163.54  Aligned_cols=217  Identities=12%  Similarity=0.044  Sum_probs=145.3

Q ss_pred             CCCeeeecCCCcee---------EEEEe--cCCCCE-EEEeC-CCCcEEEEecc--cCceeeEeee-----cCccEEEEE
Q 017194            6 AKPRRLRGHKATAT---------CCIAS--RDRPGF-VASSG-EDGCICWFDLR--SKDVQLVTDV-----GNGPVTSLC   65 (375)
Q Consensus         6 ~~~~~l~~h~~~i~---------~~~~~--~~~~~~-l~s~~-~d~~i~iw~~~--~~~~~~~~~~-----~~~~v~~l~   65 (375)
                      ...+.+..|...+.         ...|+  || ++. |+.++ .+..|.++++.  .......+..     |...+..++
T Consensus        58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~  136 (662)
T 3azo_A           58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV  136 (662)
T ss_dssp             SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE
T ss_pred             CCcceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE
Confidence            34566677766666         66676  88 666 55444 45667777765  2033445554     667889999


Q ss_pred             EeCCCCeEEEEcCC----------CeEEEEECCCC-----CcccccccccCCCcceeEEEEcCCCCeEEEEeCC------
Q 017194           66 FKSGNEDIIYVSSG----------KEVKSFDVHMP-----ASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------  124 (375)
Q Consensus        66 ~~~~~~~l~~~~~d----------~~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------  124 (375)
                      |+|||+.|++++.+          ..|++||+.+.     .....+.  ..+...+..++|+|||++|+.++.+      
T Consensus       137 ~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~  214 (662)
T 3azo_A          137 LLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS--DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW  214 (662)
T ss_dssp             EETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS--CSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred             ECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE--ecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence            99999999998876          58999999862     1222222  0335678889999999999987754      


Q ss_pred             --CcEEEEeCc-Cc---eeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194          125 --GDVKIIDIR-QH---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNA  196 (375)
Q Consensus       125 --g~i~iwd~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~  196 (375)
                        ..|++||+. ++   +...... .+...+..+.|+|+|+ +++++..++  .|.+||+.+++...... ....   ..
T Consensus       215 ~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~---~~  288 (662)
T 3azo_A          215 EGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR-REEE---FA  288 (662)
T ss_dssp             TCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC-CSSB---SS
T ss_pred             CCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc-cccc---cc
Confidence              379999998 56   4444444 5578899999999999 788888888  67777766665332221 1000   00


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE--eCCC
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI--NIES  239 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~--d~~~  239 (375)
                      ...+ ...+..++|+|      +++++++++. +.+++|  |+.+
T Consensus       289 ~p~w-~~~~~~~~~~~------~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          289 GPLW-TPGMRWFAPLA------NGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             CCCC-STTCCSEEECT------TSCEEEEEBS-SSCEEEEEETTT
T ss_pred             Cccc-cccCceEeEeC------CCEEEEEEEc-CccEEEEEECCC
Confidence            0000 01145678887      7899999988 999999  5443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.86  E-value=9.6e-18  Score=148.10  Aligned_cols=319  Identities=11%  Similarity=0.079  Sum_probs=212.6

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC--CCCcccccccccCCCcc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH--MPASWRPLESYNYNKEE  105 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~  105 (375)
                      +.++++...+++|.++|..+++.+..+.. ...+..+.|+|+|+++++++.++.|.+||+.  +.+....+..    ...
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G~~  241 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----GSE  241 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----CSE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----CCC
Confidence            46777888899999999999999888874 4456799999999999999999999999995  5444333332    234


Q ss_pred             eeEEEEc----CCCCeEEEEe-CCCcEEEEeCcCceeeeeEecC---------c-ccceeEEEEeeCCCcEEEEeecCCe
Q 017194          106 INQIVCN----PKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAG---------H-SSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus       106 v~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      ...++|+    |||+++++++ .++.|.++|..+.+.+..+...         | ...+..+..+++++.+++....+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6789999    6999988776 4589999999999888877521         1 1257788889988756667777899


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeecccc-
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKS-  248 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-  248 (375)
                      |.++|....+.+......            .......+.|+|      ++++++++. .++.|.++|+.+++....... 
T Consensus       322 v~~vd~~~~~~~~v~~i~------------~~~~~~d~~~~p------dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg  383 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEIS------------AERFLHDGGLDG------SHRYFITAANARNKLVVIDTKEGKLVAIEDTG  383 (567)
T ss_dssp             EEEEETTCSSEEEEEEEE------------CCSSEEEEEECT------TSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEecCCCccceeeeee------------ccccccCceECC------CCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence            999999876544333322            235677889998      799887766 678999999999876554432 


Q ss_pred             cCCCCC-Ccee-ecccccceeeee--------eeecCCc----ceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC-
Q 017194          249 TTKPLK-GSQS-TSKVNIRDAEME--------ILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-  313 (375)
Q Consensus       249 ~~~~~~-~~~~-~s~~g~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-  313 (375)
                      ...+.. .... +.|++..+....        .++....    ..++.+.++......-..+..+   |++++|.+... 
T Consensus       384 g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~---p~~~~l~v~~~~  460 (567)
T 1qks_A          384 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH---PNSQYLYVDATL  460 (567)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC---TTCSEEEEECTT
T ss_pred             CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeC---CCCCeEEEecCC
Confidence            111111 2222 567644443211        1111110    1134445554433333445677   99998887653 


Q ss_pred             ------CCeEEEEeCCCc-----eee-eecchhhhhhhhcccccceeeeeecCCCCCcEEEee-----CCCeEEEEec
Q 017194          314 ------DKLVKVWDCSRF-----QGV-QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-----TSKVVKVYSI  374 (375)
Q Consensus       314 ------dg~i~iwd~~~~-----~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~v~iw~~  374 (375)
                            .+.|.++|+.+.     ... ......+ ...+..-...+..+.|++ +|+.+..+.     .++.|.|+|.
T Consensus       461 ~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          461 NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE-WAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH-HHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CCCcccCceEEEEECCcccccccCCCcEEecccc-ccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEEEEEC
Confidence                  458999999876     110 0000000 001112245788999999 888766652     3789999885

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=3.2e-18  Score=139.82  Aligned_cols=245  Identities=10%  Similarity=0.109  Sum_probs=173.5

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee------cCccEEEEEEe-CCCCeEEEEcC-CCeEEE
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV------GNGPVTSLCFK-SGNEDIIYVSS-GKEVKS   84 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~------~~~~v~~l~~~-~~~~~l~~~~~-d~~i~i   84 (375)
                      +|-..+.+++++++ ++++++...++.|.+||.. ++.+..+..      +...+..+++. ++++.+++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCC-CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            45567899999998 7888888888999999987 555555532      33578899995 67766655533 789999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~  163 (375)
                      ||. +++....+..  .+...+..++++++++++++...++.|.+||.. ++.+..+.. .+...+..++++|++. +++
T Consensus       105 ~d~-~g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v  179 (286)
T 1q7f_A          105 YNQ-YGQFVRKFGA--TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFI  179 (286)
T ss_dssp             ECT-TSCEEEEECT--TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEE
T ss_pred             ECC-CCcEEEEecC--ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EEE
Confidence            994 3443332221  223568899999999888777778999999964 555555541 2345689999999987 777


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-cEEEEeCCCcce
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELN  242 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~  242 (375)
                      +...++.|++||.. ++.+..+...     .      ....+..+++++      +++++++...++ .|.+||.... .
T Consensus       180 ~~~~~~~i~~~~~~-g~~~~~~~~~-----g------~~~~p~~i~~d~------~G~l~v~~~~~~~~i~~~~~~g~-~  240 (286)
T 1q7f_A          180 SDNRAHCVKVFNYE-GQYLRQIGGE-----G------ITNYPIGVGINS------NGEILIADNHNNFNLTIFTQDGQ-L  240 (286)
T ss_dssp             EEGGGTEEEEEETT-CCEEEEESCT-----T------TSCSEEEEEECT------TCCEEEEECSSSCEEEEECTTSC-E
T ss_pred             EECCCCEEEEEcCC-CCEEEEEccC-----C------ccCCCcEEEECC------CCCEEEEeCCCCEEEEEECCCCC-E
Confidence            77789999999974 5555544311     0      124678999988      788888887776 9999996531 1


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                      .                                     ..+ ........+.+++++   |+|+++++ +.|+.|++|++
T Consensus       241 ~-------------------------------------~~~-~~~~~~~~~~~i~~~---~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          241 I-------------------------------------SAL-ESKVKHAQCFDVALM---DDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             E-------------------------------------EEE-EESSCCSCEEEEEEE---TTTEEEEE-ETTTEEEEEEC
T ss_pred             E-------------------------------------EEE-cccCCCCcceeEEEC---CCCcEEEE-CCCCeEEEEEc
Confidence            0                                     111 111222347889999   89987777 56899999998


Q ss_pred             CCc
Q 017194          323 SRF  325 (375)
Q Consensus       323 ~~~  325 (375)
                      ...
T Consensus       279 ~~~  281 (286)
T 1q7f_A          279 VQL  281 (286)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=7.5e-19  Score=146.86  Aligned_cols=276  Identities=10%  Similarity=0.067  Sum_probs=186.5

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      ..|.++.|+++ ...++..+.++.++.|   .++....+..+...+.+++|+++++.++++..++.|.+||..+++....
T Consensus         6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             CCCCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             cccceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            45778889998 6677777788899999   3555666777777889999999999777888889999999986543222


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCC----CcEEEEeCcCceeeeeEe-cCcccceeEEEEeeCCCcEEEEeec---
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGL---  167 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~---  167 (375)
                      .   ..+...+.+++++|+++++++...+    +.|.+||.++++....+. ..+...+.+++++|++. ++++...   
T Consensus        82 ~---~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~  157 (333)
T 2dg1_A           82 F---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS  157 (333)
T ss_dssp             E---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBT
T ss_pred             e---eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccc
Confidence            1   1235679999999999887777666    689999988776543332 02345789999999997 5665543   


Q ss_pred             ---CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE-EecCCcEEEEeCCCc-ce
Q 017194          168 ---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESE-LN  242 (375)
Q Consensus       168 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~-~~  242 (375)
                         .+.|..+|...++...... .             ...+..++++|      +++.+++ .+.++.|.+||+.+. ..
T Consensus       158 ~~~~~~l~~~~~~~~~~~~~~~-~-------------~~~~~~i~~~~------dg~~l~v~~~~~~~i~~~d~~~~g~~  217 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTPIIQ-N-------------ISVANGIALST------DEKVLWVTETTANRLHRIALEDDGVT  217 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEEEEE-E-------------ESSEEEEEECT------TSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             cCCCceEEEEeCCCCEEEEeec-C-------------CCcccceEECC------CCCEEEEEeCCCCeEEEEEecCCCcC
Confidence               3567777765544332222 1             23578899998      7876554 456789999998641 11


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                      ....                                .......+.++ ..+..++++   ++|+++++...++.|.+||.
T Consensus       218 ~~~~--------------------------------~~~~~~~~~~~-~~~~~i~~d---~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          218 IQPF--------------------------------GATIPYYFTGH-EGPDSCCID---SDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEE--------------------------------EEEEEEECCSS-SEEEEEEEB---TTCCEEEEEETTTEEEEECT
T ss_pred             cccc--------------------------------cceEEEecCCC-CCCCceEEC---CCCCEEEEEcCCCEEEEECC
Confidence            0000                                00111122232 467789999   89998888877899999998


Q ss_pred             CCceeeeecchhhhhhhhc------ccccceeeeeecCCCCCcEEEeeCC
Q 017194          323 SRFQGVQTSINNDLLIKNI------NLNKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                      . ++..         ..+.      +|...+.+++|+| +++.|+.++.+
T Consensus       262 ~-g~~~---------~~~~~~~~~~g~~~~~~~~~~~~-dg~~L~v~~~~  300 (333)
T 2dg1_A          262 R-GYPI---------GQILIPGRDEGHMLRSTHPQFIP-GTNQLIICSND  300 (333)
T ss_dssp             T-SCEE---------EEEECTTGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred             C-CCEE---------EEEEcCCCccccccCcceEEECC-CCCEEEEEeCc
Confidence            5 3221         1121      2223688999987 87677665544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=6.2e-19  Score=146.84  Aligned_cols=253  Identities=11%  Similarity=0.096  Sum_probs=175.3

Q ss_pred             CccEEEEEEeCCCCeEEEEcCC------------------------CeEEEEECCCCCcccccccccCCCcceeEEEEcC
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSG------------------------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP  113 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  113 (375)
                      -..+.+++++|+|+.+++...+                        +.|.+||..+++......  ..+-.....++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--KNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--TTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--CCccCCceEEEECC
Confidence            3578999999999988887766                        479999998776533222  12335688999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCcCce-eeeeEe--------cCcccceeEEEEee-CCCcEEEEee-cCCeEEEeeCCCCCcc
Q 017194          114 KSSFLACADDGGDVKIIDIRQHC-LYKSLR--------AGHSSICSSVQFIP-WKPWEVISGG-LDSKLVMWDFSKGRPN  182 (375)
Q Consensus       114 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~-~~~~~l~~~~-~d~~i~~wd~~~~~~~  182 (375)
                      +++++++...++.|++||..... .+..+.        ..+......++++| ++. ++++.+ .++.|++|| .+++.+
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCCCEE
Confidence            99988888888999999986442 455552        13444689999999 665 677775 689999999 557666


Q ss_pred             eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC-CCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194          183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~  261 (375)
                      ..+.....   ..............++++|      + +.++++...++.|++||..+++....                
T Consensus       179 ~~~~~~g~---~~~~~~~~~~~p~gia~d~------~~g~l~v~d~~~~~I~~~~~~~G~~~~~----------------  233 (329)
T 3fvz_A          179 TQWGEESS---GSSPRPGQFSVPHSLALVP------HLDQLCVADRENGRIQCFKTDTKEFVRE----------------  233 (329)
T ss_dssp             EEECEECC---SSSCCTTEESCEEEEEEET------TTTEEEEEETTTTEEEEEETTTCCEEEE----------------
T ss_pred             EEeccCCC---CCCCCCcccCCCcEEEEEC------CCCEEEEEECCCCEEEEEECCCCcEEEE----------------
Confidence            65532100   0000000113478999998      6 77777777889999999985432211                


Q ss_pred             cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC------CCcEEEEecCCCeEEEEeCCCceeeeecchhh
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE------RGKYLISGGNDKLVKVWDCSRFQGVQTSINND  335 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  335 (375)
                                            .....+...+..++++   |      +|+..++...+..|++|+..+++.        
T Consensus       234 ----------------------~~~~~~~~~~~~~~~~---pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--------  280 (329)
T 3fvz_A          234 ----------------------IKHASFGRNVFAISYI---PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--------  280 (329)
T ss_dssp             ----------------------ECCTTTTTCEEEEEEE---TTEEEEEECCCCTTCSCCCCEEEEETTTCCE--------
T ss_pred             ----------------------EeccccCCCcceeeec---CCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--------
Confidence                                  1123445667888888   7      333333344556899999998843        


Q ss_pred             hhhhh---cccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          336 LLIKN---INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       336 ~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                       +..+   .++...+..++++| +|.++++...+++|++|++
T Consensus       281 -~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          281 -IDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             -EEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEE
T ss_pred             -EEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeC
Confidence             3332   35667789999999 8888888888999999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=2.9e-19  Score=152.65  Aligned_cols=259  Identities=9%  Similarity=0.063  Sum_probs=173.2

Q ss_pred             EEEecccCceeeEeeecCccEEE-----EEEeCCCCeEEEEcC-CC--eEEEEECCCCCcccccccccCCCcceeEEEEc
Q 017194           41 CWFDLRSKDVQLVTDVGNGPVTS-----LCFKSGNEDIIYVSS-GK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCN  112 (375)
Q Consensus        41 ~iw~~~~~~~~~~~~~~~~~v~~-----l~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  112 (375)
                      ..++..++..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.....   ..+...+..+.|+
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt---~~~~~~~~~~~~s   89 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT---EGRGDNTFGGFLS   89 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC---CSSCBCSSSCEEC
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee---eCCCCCccceEEc
Confidence            34577778888888777766665     889999999999887 56  5888898876543322   2334455577899


Q ss_pred             CCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEE--EeeCCCcEEEEe----------------------ecC
Q 017194          113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ--FIPWKPWEVISG----------------------GLD  168 (375)
Q Consensus       113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~----------------------~~d  168 (375)
                      ||++.|+.++.++.|++||+.+++....+. .+...+....  ++|++. +++..                      ..+
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
T 3pe7_A           90 PDDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPC  167 (388)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCc
Confidence            999999999999999999999988776666 5555554444  478887 45532                      244


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC------CcEEEEeCCCcce
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELN  242 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~  242 (375)
                      ..|.+||+.+++......              +...+..++|+|.     +++.|+....+      ..|.++|..+...
T Consensus       168 ~~l~~~d~~~g~~~~l~~--------------~~~~~~~~~~sp~-----dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQ--------------ENQWLGHPIYRPY-----DDSTVAFCHEGPHDLVDARMWLINEDGTNM  228 (388)
T ss_dssp             EEEEEEETTTCCEEEEEE--------------ESSCEEEEEEETT-----EEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred             ceEEEEECCCCceEEeec--------------CCccccccEECCC-----CCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence            789999999886544443              2356889999882     47777766653      3777888765311


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC--ccEEEEEEeecCCCCcEEEEecC-----CC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGN-----DK  315 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~~l~s~~~-----dg  315 (375)
                                                               ..+..+.  ..+..++|+   |||+.|+..+.     +.
T Consensus       229 -----------------------------------------~~l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~  264 (388)
T 3pe7_A          229 -----------------------------------------RKVKTHAEGESCTHEFWV---PDGSALVYVSYLKGSPDR  264 (388)
T ss_dssp             -----------------------------------------EESCCCCTTEEEEEEEEC---TTSSCEEEEEEETTCCCE
T ss_pred             -----------------------------------------EEeeeCCCCcccccceEC---CCCCEEEEEecCCCCCcc
Confidence                                                     1222222  357788999   99997765443     22


Q ss_pred             eEEEEeCCCceeeeecchhhhhhhhccccc---ceeeeeecCCCCCcEEEe---------eCCCeEEEEecC
Q 017194          316 LVKVWDCSRFQGVQTSINNDLLIKNINLNK---KVNWLCTTPTESENLVVC---------DTSKVVKVYSIS  375 (375)
Q Consensus       316 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~---------~~dg~v~iw~~~  375 (375)
                      .|++||+.+++..       .+....++..   .....+|+| ||+.|+..         ..+..|++|+++
T Consensus       265 ~l~~~d~~~g~~~-------~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          265 FIYSADPETLENR-------QLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             EEEEECTTTCCEE-------EEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETT
T ss_pred             eEEEEecCCCceE-------EEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEecc
Confidence            4999999987532       1111122111   122347888 88888754         456789999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=2.4e-19  Score=165.61  Aligned_cols=288  Identities=12%  Similarity=0.039  Sum_probs=175.5

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc--CCCcceeEEEEcCCCCeEEEEeCC---------CcEE
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN--YNKEEINQIVCNPKSSFLACADDG---------GDVK  128 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~  128 (375)
                      ...++.|+|++++++++  |+.|++||+.+++....+....  ........+.|+|||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45689999999888876  8999999999886543333221  111123458999999999998875         5677


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC------
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP------  202 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~------  202 (375)
                      +||+.+++... +. .+...+...+|+|||+ .|+.+ .++.|++||+.+++.......+.+.    .....++      
T Consensus        96 ~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~----~~~~g~~~~v~~e  167 (740)
T 4a5s_A           96 IYDLNKRQLIT-EE-RIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKED----IIYNGITDWVYEE  167 (740)
T ss_dssp             EEETTTTEECC-SS-CCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTT----TEEESBCCHHHHH
T ss_pred             EEECCCCcEEE-cc-cCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCcc----ceecCcccccccc
Confidence            99999987654 55 5778899999999999 57666 4789999999887644321111000    0000001      


Q ss_pred             ---CceeEEeecCCccccCCCCEEEEEecCC-cEEEEeCCCcceeecccccCCCCCCceeecccccceee--eeeeecCC
Q 017194          203 ---AFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSG  276 (375)
Q Consensus       203 ---~~v~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~--~~~~~~~~  276 (375)
                         .....+.|+|      ||+.|+.++.|. .+.+|++.......    ...+....+.+.+.|.....  ...++...
T Consensus       168 e~~~~~~~~~wSp------Dg~~la~~~~d~~~v~~~~~~~~~~~~----~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~  237 (740)
T 4a5s_A          168 EVFSAYSALWWSP------NGTFLAYAQFNDTEVPLIEYSFYSDES----LQYPKTVRVPYPKAGAVNPTVKFFVVNTDS  237 (740)
T ss_dssp             HTSSSSBCEEECT------TSSEEEEEEEECTTCCEEEEEECCSTT----CSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred             hhcCCCcceEECC------CCCEEEEEEEcccCCceEEEEeecCCC----CCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence               1224588999      899999887554 48888764211100    11122233444455543222  23344333


Q ss_pred             ---c---ceeEeee--eecCCCccEEEEEEeecCCCCcEEEEe----cCCCeEEEEeCCCceeeeecchhhhhhhh--cc
Q 017194          277 ---G---KRLHLDY--SVGGHTAAASCVAFSMFGERGKYLISG----GNDKLVKVWDCSRFQGVQTSINNDLLIKN--IN  342 (375)
Q Consensus       277 ---~---~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~  342 (375)
                         .   ...++..  .+.+|...+..++|+   |||++++..    +.+..|++||+.+++.....   ..+..+  ..
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws---pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~---~~~~~l~~~~  311 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWA---TQERISLQWLRRIQNYSVMDICDYDESSGRWNC---LVARQHIEMS  311 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEE---ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE---CGGGCEEEEC
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEe---CCCeEEEEEeCCCCCEEEEEEEECCCCccccce---eEEEEeeecc
Confidence               2   1111111  112477889999999   899966654    33457999999987300000   111222  34


Q ss_pred             ccccee-----eeeecCCCCCcEE-Eee-CCC--eEEEEec
Q 017194          343 LNKKVN-----WLCTTPTESENLV-VCD-TSK--VVKVYSI  374 (375)
Q Consensus       343 ~~~~v~-----~~~~~~~~~~~l~-s~~-~dg--~v~iw~~  374 (375)
                      |...+.     ..+|+| ||+.|+ ..+ .+|  .|++|++
T Consensus       312 ~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             SSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEET
T ss_pred             CCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEEC
Confidence            555444     678999 998877 555 344  5777765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.84  E-value=4.1e-18  Score=139.85  Aligned_cols=249  Identities=12%  Similarity=0.013  Sum_probs=176.3

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCC-EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      .+..+..+..+.....+++|+|+ ++ +++++..++.|..|+..++  ...+..+...+.+++++++|+.+++...++.|
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             CCCcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence            44566777777788899999999 66 7888888999999999877  56666677889999999999987777767899


Q ss_pred             EEEECCCCCcccccccccC-CCcceeEEEEcCCCCeEEEE----e-------------CCCcEEEEeCcCceeeeeEecC
Q 017194           83 KSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACA----D-------------DGGDVKIIDIRQHCLYKSLRAG  144 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~----~-------------~dg~i~iwd~~~~~~~~~~~~~  144 (375)
                      .+||..+++.......... ....+..++++|+|+++++.    .             ..+.|..++.. ++. ..+. .
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~  169 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-R  169 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-C
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-c
Confidence            9999977654322222111 12356789999999888863    2             13456666654 443 3444 4


Q ss_pred             cccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCCc---ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       145 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      +......++|+|+++ .+++.+.++.|.+||+. +++.   ...+ ..            ....+..+++++      +|
T Consensus       170 ~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~------------~~~~p~~i~~d~------~G  229 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHF-TV------------EPGKTDGLRVDA------GG  229 (296)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEE-CC------------SSSCCCSEEEBT------TS
T ss_pred             CCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC------------CCCCCCeEEECC------CC
Confidence            666789999999998 56777788999999997 4443   1222 11            234556788888      78


Q ss_pred             CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee
Q 017194          221 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM  300 (375)
Q Consensus       221 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  300 (375)
                      +++++.  ++.|.+||...                                         +.+..+..+.. +.+++|..
T Consensus       230 ~l~v~~--~~~v~~~~~~g-----------------------------------------~~~~~~~~~~~-~~~~~f~~  265 (296)
T 3e5z_A          230 LIWASA--GDGVHVLTPDG-----------------------------------------DELGRVLTPQT-TSNLCFGG  265 (296)
T ss_dssp             CEEEEE--TTEEEEECTTS-----------------------------------------CEEEEEECSSC-CCEEEEES
T ss_pred             CEEEEc--CCeEEEECCCC-----------------------------------------CEEEEEECCCC-ceeEEEEC
Confidence            766655  78999999873                                         22234444555 88888941


Q ss_pred             cCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          301 FGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       301 ~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                        |+++.|++++.+ .+.-++.++.
T Consensus       266 --~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          266 --PEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             --TTSCEEEEEETT-EEEEEECSCC
T ss_pred             --CCCCEEEEEcCC-eEEEEEcccc
Confidence              788888888775 4556666664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=3.6e-18  Score=143.54  Aligned_cols=257  Identities=10%  Similarity=-0.000  Sum_probs=171.0

Q ss_pred             CceeEEEEecCCCCEEEEeC---------CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---C--e
Q 017194           16 ATATCCIASRDRPGFVASSG---------EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---K--E   81 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~---------~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~--~   81 (375)
                      ..+..+++  | |+.++...         .++.|.+||+.+++.. .+    ..+..++|+|+|++|+.++.+   +  .
T Consensus        15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            45777788  6 77776542         2567999999887753 33    567889999999999887753   3  4


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC---------------------------CcEEEEeCcC
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG---------------------------GDVKIIDIRQ  134 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~~~  134 (375)
                      |.+|++.+++.. .+...   .. +..++|+|+++.|+.++.+                           ..|++||+.+
T Consensus        87 l~~~~~~~g~~~-~l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           87 IWVADLETLSSK-KILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EEEEETTTTEEE-EEEEE---SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             EEEEECCCCceE-EEEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            888888765432 22222   33 8999999999998887632                           5699999988


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC-------eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA  207 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (375)
                      ++.+..+. . . .+..+.|+|+|  +++++..+.       ...+|.+.+++ ...+. .            + ..+..
T Consensus       162 ~~~~~~l~-~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~-~------------~-~~~~~  221 (347)
T 2gop_A          162 EEVIEEFE-K-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMF-E------------K-VSFYA  221 (347)
T ss_dssp             TEEEEEEE-E-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEE-E------------E-ESEEE
T ss_pred             CeEEeeec-C-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc-eEEec-c------------C-cceee
Confidence            88756676 4 4 78899999998  566665442       33444443443 23332 1            1 22333


Q ss_pred             EeecCCccccCCCCEEEEEecC--------CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcce
Q 017194          208 IAIPDADMLDKTNKICVVAKGD--------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR  279 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~  279 (375)
                      +  +|      +|+.|+.++.+        ..|.+||  +++                                      
T Consensus       222 ~--sp------dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--------------------------------------  253 (347)
T 2gop_A          222 V--DS------DGERILLYGKPEKKYMSEHNKLYIYD--GKE--------------------------------------  253 (347)
T ss_dssp             E--EE------CSSCEEEEECCSSSCCCSSCEEEEEC--SSC--------------------------------------
T ss_pred             E--CC------CCCEEEEEEccccCCccccceEEEEC--CCc--------------------------------------
Confidence            3  66      79888877644        3677777  321                                      


Q ss_pred             eEeeeeecCCCccEEE-EEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC
Q 017194          280 LHLDYSVGGHTAAASC-VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE  358 (375)
Q Consensus       280 ~~~~~~~~~~~~~v~~-~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  358 (375)
                        .......+...+.. +.|+    ++ ++++++.++.++|| +.++         +. ..+..+...|.+++|+|   .
T Consensus       254 --~~~l~~~~~~~~~~~~~~s----dg-~~~~~~~~~~~~l~-~~~g---------~~-~~~~~~~~~v~~~~~s~---~  312 (347)
T 2gop_A          254 --VMGILDEVDRGVGQAKIKD----GK-VYFTLFEEGSVNLY-IWDG---------EI-KPIAKGRHWIMGFDVDE---I  312 (347)
T ss_dssp             --EEESSTTCCSEEEEEEEET----TE-EEEEEEETTEEEEE-EESS---------SE-EEEECSSSEEEEEEESS---S
T ss_pred             --eEeccccCCcccCCccEEc----Cc-EEEEEecCCcEEEE-EcCC---------ce-EEEecCCCeEEeeeeeC---c
Confidence              11122344566775 7775    66 88899999999999 8754         22 22334567888999987   5


Q ss_pred             cEEEeeCCCeE-EEEec
Q 017194          359 NLVVCDTSKVV-KVYSI  374 (375)
Q Consensus       359 ~l~s~~~dg~v-~iw~~  374 (375)
                      ++++++.++.. .+|.+
T Consensus       313 ~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          313 VVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEEEECSSSCCEEEEE
T ss_pred             EEEEEcCCCChHHheEe
Confidence            77777766654 77754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.83  E-value=1.1e-17  Score=153.86  Aligned_cols=248  Identities=7%  Similarity=-0.026  Sum_probs=171.1

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCC-----cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe-------
Q 017194           14 HKATATCCIASRDRPGFVASSGEDG-----CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE-------   81 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~-------   81 (375)
                      |...+..++|||| +++||.+..++     .|++||+.+++....... ...+..++|+|||+.|+.++.++.       
T Consensus       123 ~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          123 GTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             SCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4446889999999 88888665433     899999999987654322 223678999999999999887765       


Q ss_pred             ---------EEEEECCCCCcc-cccccccCCCcceeEEEEcCCCCeEEEEeC-----CCcEEEEeCcC------ce-eee
Q 017194           82 ---------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQ------HC-LYK  139 (375)
Q Consensus        82 ---------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~  139 (375)
                               |++|++.++... ..+.....|...+..+.|+||+++|+..+.     +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999876532 122222233455789999999999887764     56899999986      43 355


Q ss_pred             eEecCcccceeEEEEeeCCCcEEEEeec---CCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCC-CceeEEeecCC
Q 017194          140 SLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNP-AFVHAIAIPDA  213 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~  213 (375)
                      .+. .+...+.. .|+|+|+.+++.+..   .+.|.+||+.++..  ...+..+            .. ..+..+++++ 
T Consensus       281 ~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~-  345 (710)
T 2xdw_A          281 KLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE------------HEKDVLEWVACVR-  345 (710)
T ss_dssp             EEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC------------CSSCEEEEEEEET-
T ss_pred             Eee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC------------CCCCeEEEEEEEc-
Confidence            666 56655554 588998844444433   34799999987652  2344322            12 2577888886 


Q ss_pred             ccccCCCCEEEEEecCCc--EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc
Q 017194          214 DMLDKTNKICVVAKGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA  291 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (375)
                           ++.++++...++.  |.+||+.++.                                        ....+..+..
T Consensus       346 -----~~~lv~~~~~~g~~~l~~~~~~~g~----------------------------------------~~~~l~~~~~  380 (710)
T 2xdw_A          346 -----SNFLVLCYLHDVKNTLQLHDLATGA----------------------------------------LLKIFPLEVG  380 (710)
T ss_dssp             -----TTEEEEEEEETTEEEEEEEETTTCC----------------------------------------EEEEECCCSS
T ss_pred             -----CCEEEEEEEECCEEEEEEEECCCCC----------------------------------------EEEecCCCCc
Confidence                 5788888888884  5666764431                                        2224445567


Q ss_pred             cEEEEEEeecCCCCcEEEE----ecCCCeEEEEeCCCce
Q 017194          292 AASCVAFSMFGERGKYLIS----GGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       292 ~v~~~~~s~~~~~~~~l~s----~~~dg~i~iwd~~~~~  326 (375)
                      .+..+.++   |+++.++.    ....+.|++||+.+++
T Consensus       381 ~v~~~~~s---~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          381 SVVGYSGQ---KKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEECC---TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eEEEEecC---CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            78888888   78865552    2346889999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.83  E-value=1.4e-17  Score=138.43  Aligned_cols=257  Identities=11%  Similarity=0.014  Sum_probs=179.9

Q ss_pred             CCCcEEEEecccCceeeEee------ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEE
Q 017194           36 EDGCICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI  109 (375)
Q Consensus        36 ~d~~i~iw~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  109 (375)
                      .+++|.++|.++++....+.      ........+.+. +++..++...++.|.+||..+++....+..    ......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEE
Confidence            47899999999988755441      112346777775 355566666679999999998776555532    3567889


Q ss_pred             EEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecCcc-----cceeEEEEeeCCCcEEEEee-cCCeEEEeeCCCCCcc
Q 017194          110 VCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHS-----SICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPN  182 (375)
Q Consensus       110 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~  182 (375)
                      ++++++ .++++. .++.|.+||..+++....+. ...     .....+++ .++. ++++.. .++.|.++|+.+++..
T Consensus        90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~-~~~~-lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           90 HFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ-YGKY-VYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE-ETTE-EEEEECTTCCEEEEEETTTTEEE
T ss_pred             EEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE-ECCE-EEEEcCCCCCEEEEEECCCCeEE
Confidence            998888 455554 78999999999998887776 222     15667777 4443 455544 4889999999999888


Q ss_pred             eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC----------CcEEEEeCCCcceeecccccCCC
Q 017194          183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----------GVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      ..+..+              .....++++|      ++++++++..+          +.|.++|..+.+..         
T Consensus       166 ~~i~~g--------------~~p~~i~~~~------dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~---------  216 (328)
T 3dsm_A          166 DELTIG--------------IQPTSLVMDK------YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE---------  216 (328)
T ss_dssp             EEEECS--------------SCBCCCEECT------TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE---------
T ss_pred             EEEEcC--------------CCccceEEcC------CCCEEEEECCCccCCccccCCceEEEEECCCCeEE---------
Confidence            887754              3456788888      78877776654          78999999875211         


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCC-CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  331 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  331 (375)
                                                     ..+... ......++++   |++++|.++..  .|.+||..+++     
T Consensus       217 -------------------------------~~~~~~~g~~p~~la~~---~d~~~lyv~~~--~v~~~d~~t~~-----  255 (328)
T 3dsm_A          217 -------------------------------KQFKFKLGDWPSEVQLN---GTRDTLYWINN--DIWRMPVEADR-----  255 (328)
T ss_dssp             -------------------------------EEEECCTTCCCEEEEEC---TTSCEEEEESS--SEEEEETTCSS-----
T ss_pred             -------------------------------EEEecCCCCCceeEEEe---cCCCEEEEEcc--EEEEEECCCCc-----
Confidence                                           122111 2357899999   89988887765  89999998873     


Q ss_pred             chhhhhh-h-hcccccceeeeeecCCCCCcEEEe----eCCCeEEEEecC
Q 017194          332 INNDLLI-K-NINLNKKVNWLCTTPTESENLVVC----DTSKVVKVYSIS  375 (375)
Q Consensus       332 ~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~v~iw~~~  375 (375)
                          +.. . ..........++++|.+++.+++.    ..++.|.+|+.+
T Consensus       256 ----~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          256 ----VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             ----CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ----eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence                211 1 111245688899998556655665    578899999863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=1.1e-16  Score=133.67  Aligned_cols=214  Identities=10%  Similarity=0.028  Sum_probs=148.5

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC----CeEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKS   84 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----~~i~i   84 (375)
                      ..+.++...+.+++|+|+ +++++++..++.|.+||..+++.......+...+.+++++|+++.+++...+    +.|.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             EEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            445666677899999998 7888888889999999998887655444567789999999999877776665    68999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCC
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (375)
                      ||.+++.....+.. ..+...+..++++|+++++++...      .+.|..+|..+++... +. .....+..++|+|++
T Consensus       117 ~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          117 ATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-II-QNISVANGIALSTDE  193 (333)
T ss_dssp             ECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EE-EEESSEEEEEECTTS
T ss_pred             EeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-ee-cCCCcccceEECCCC
Confidence            99886543212221 123457899999999987776653      3567777765554433 32 234457899999999


Q ss_pred             CcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          159 PWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      +.++++.+.++.|.+||+.+ +.....+.....  .    .......+..+++++      +++++++...++.|.+||.
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~--~----~~~~~~~~~~i~~d~------~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIP--Y----YFTGHEGPDSCCIDS------DDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE--E----ECCSSSEEEEEEEBT------TCCEEEEEETTTEEEEECT
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEE--E----ecCCCCCCCceEECC------CCCEEEEEcCCCEEEEECC
Confidence            74455666788999999974 443332210000  0    000013567899988      7888877777889999998


Q ss_pred             C
Q 017194          238 E  238 (375)
Q Consensus       238 ~  238 (375)
                      .
T Consensus       262 ~  262 (333)
T 2dg1_A          262 R  262 (333)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.82  E-value=8.4e-16  Score=126.19  Aligned_cols=283  Identities=7%  Similarity=-0.019  Sum_probs=193.6

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE-eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      +..+...+.++++.++ ++++++...++.|.+||.. ++.... +..+...+.++++.+++...++...++.|..|+.. 
T Consensus        10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            4455678999999998 7877777767899999988 553322 12345678999999999877777768899999976 


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      ++ ...+. .......+..+++.++++++++...++.|.+||. +++............+..+++.+++. ++++...++
T Consensus        87 g~-~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~  162 (299)
T 2z2n_A           87 GI-IKEYT-LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNN  162 (299)
T ss_dssp             SC-EEEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTT
T ss_pred             Cc-EEEEe-CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCC
Confidence            22 22221 1123457889999999988777777889999998 55443322213445789999999987 677666778


Q ss_pred             eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc
Q 017194          170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST  249 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  249 (375)
                      .|..||. +++... +....           ....+..+++.+      ++++.++...++.|.+||. ++...      
T Consensus       163 ~i~~~~~-~g~~~~-~~~~~-----------~~~~~~~i~~~~------~g~l~v~~~~~~~i~~~~~-~g~~~------  216 (299)
T 2z2n_A          163 AIGRITE-SGDITE-FKIPT-----------PASGPVGITKGN------DDALWFVEIIGNKIGRITT-SGEIT------  216 (299)
T ss_dssp             EEEEECT-TCCEEE-EECSS-----------TTCCEEEEEECT------TSSEEEEETTTTEEEEECT-TCCEE------
T ss_pred             EEEEEcC-CCcEEE-eeCCC-----------CCCcceeEEECC------CCCEEEEccCCceEEEECC-CCcEE------
Confidence            9999998 555433 32110           124578899988      6887777667889999998 43211      


Q ss_pred             CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee
Q 017194          250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  329 (375)
Q Consensus       250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  329 (375)
                                                      . .....+...+.+++++   ++|+++++...++.|..||.. ++.. 
T Consensus       217 --------------------------------~-~~~~~~~~~~~~i~~~---~~g~l~v~~~~~~~i~~~d~~-g~~~-  258 (299)
T 2z2n_A          217 --------------------------------E-FKIPTPNARPHAITAG---AGIDLWFTEWGANKIGRLTSN-NIIE-  258 (299)
T ss_dssp             --------------------------------E-EECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEEETT-TEEE-
T ss_pred             --------------------------------E-EECCCCCCCceeEEEC---CCCCEEEeccCCceEEEECCC-CceE-
Confidence                                            0 1222345678899999   899877777678899999984 3211 


Q ss_pred             ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          330 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                            .. ....+...+.++++ + +++++++.. .+.|..++.
T Consensus       259 ------~~-~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          259 ------EY-PIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             ------EE-ECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEE
T ss_pred             ------EE-eCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEc
Confidence                  00 11234467888888 6 887666655 455665553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.80  E-value=9e-18  Score=154.01  Aligned_cols=249  Identities=12%  Similarity=-0.026  Sum_probs=168.8

Q ss_pred             cCCCceeEEEEecCCCCEEE-----EeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe------
Q 017194           13 GHKATATCCIASRDRPGFVA-----SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE------   81 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~-----s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~------   81 (375)
                      +|+..+..++|||| |++||     .|+.+..|++||+.+++.+..-.........++|+|||+.|+.++.+..      
T Consensus       118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            45557899999999 88888     4555678999999998865111111111267999999999999988765      


Q ss_pred             -------EEEEECCCCCcc-cccccccCCCcceeEEEEcCCCCeEEEEeCCC----cEEEEeCcCceeeeeEecCcccce
Q 017194           82 -------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCLYKSLRAGHSSIC  149 (375)
Q Consensus        82 -------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v  149 (375)
                             |++|++.++... ..+.....+...+..+.|+|||++|+..+.++    .|++|+..+++. ..+. .+...+
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~-~~~~~~  274 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV-KGVGAK  274 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE-ECSSCC
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee-cCCCce
Confidence                   999999876532 23333334456788999999999998887665    677787655543 4444 455556


Q ss_pred             eEEEEeeCCCcEEEEee---cCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194          150 SSVQFIPWKPWEVISGG---LDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      ....+ +++. +++...   .++.|.+||+.+++.  ...+....           ....+..++++       ++.+++
T Consensus       275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-----------~~~~l~~~~~~-------~~~lv~  334 (695)
T 2bkl_A          275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-----------SSASLLSVSIV-------GGHLSL  334 (695)
T ss_dssp             EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-----------SSCEEEEEEEE-------TTEEEE
T ss_pred             EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-----------CCCeEEEEEEE-------CCEEEE
Confidence            66666 6777 666655   358999999987653  23333220           12456777776       478889


Q ss_pred             EEecCCcEEEEeCCC-cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-CccEEEEEEeecC
Q 017194          225 VAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFG  302 (375)
Q Consensus       225 ~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~  302 (375)
                      +...|+..++|.+.. +.                                        ....+..+ ...+..++++   
T Consensus       335 ~~~~dg~~~l~~~~~~g~----------------------------------------~~~~l~~~~~~~v~~~~~s---  371 (695)
T 2bkl_A          335 EYLKDATSEVRVATLKGK----------------------------------------PVRTVQLPGVGAASNLMGL---  371 (695)
T ss_dssp             EEEETTEEEEEEEETTCC----------------------------------------EEEECCCSSSSEECCCBSC---
T ss_pred             EEEECCEEEEEEEeCCCC----------------------------------------eeEEecCCCCeEEEEeecC---
Confidence            999999888876542 11                                        11223333 4567777788   


Q ss_pred             CCCcEEE----EecCCCeEEEEeCCCcee
Q 017194          303 ERGKYLI----SGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       303 ~~~~~l~----s~~~dg~i~iwd~~~~~~  327 (375)
                      |+++.++    +....+.|++||+.+++.
T Consensus       372 ~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          372 EDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7887666    344568899999988653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=2.2e-18  Score=147.54  Aligned_cols=255  Identities=7%  Similarity=0.033  Sum_probs=165.0

Q ss_pred             EEEecccCceeeEeeecCcc-----EEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEc
Q 017194           41 CWFDLRSKDVQLVTDVGNGP-----VTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN  112 (375)
Q Consensus        41 ~iw~~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  112 (375)
                      ...|..+++.+..+..+...     +..++|+|+|++|+.+...   ..|.+||+.+++... +.  ..+......+.|+
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~--~~~~~~~~~~~~s   89 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LT--EGKGDNTFGGFIS   89 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CC--CSSCBCTTTCEEC
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-ee--cCCCCccccceEC
Confidence            34577777776666554333     6788999999998877543   478899988764322 21  1112223347899


Q ss_pred             CCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeE-------------------EEEeeCCCcEEEEe-----ecC
Q 017194          113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS-------------------VQFIPWKPWEVISG-----GLD  168 (375)
Q Consensus       113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~d  168 (375)
                      |++++|+.++.++.|++||+.+++...... .+......                   +.|+|+++. ++..     ..+
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~~~~~~  167 (396)
T 3c5m_A           90 TDERAFFYVKNELNLMKVDLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW-EKFAEFYHTNPT  167 (396)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-HHHHHHHHTCCC
T ss_pred             CCCCEEEEEEcCCcEEEEECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcc-eeeeeeccCCCc
Confidence            999999999999999999998887655554 34332222                   345677763 3332     456


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC------CcEEEEeCCCcce
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELN  242 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~  242 (375)
                      ..|++||+.+++......              +...+..+.|+|.     +++.|+..+.+      ..|.+||+.+...
T Consensus       168 ~~l~~~d~~~g~~~~~~~--------------~~~~~~~~~~sp~-----dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQ--------------DTAWLGHPIYRPF-----DDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             EEEEEEETTTCCEEEEEE--------------ESSCEEEEEEETT-----EEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             ceEEEEECCCCcEEeecc--------------CCcccccceECCC-----CCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence            789999999877654443              2456888999882     36666655543      3578888764311


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC--CccEEEEEEeecCCCCcEEEEecCC-----C
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGND-----K  315 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~l~s~~~d-----g  315 (375)
                                                            .   .+..+  ...+..++|+   |+|++|+.++.+     +
T Consensus       229 --------------------------------------~---~l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          229 --------------------------------------R---KIKEHAEGESCTHEFWI---PDGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             --------------------------------------E---ESSCCCTTEEEEEEEEC---TTSSCEEEEEEETTTCCE
T ss_pred             --------------------------------------e---EeeccCCCccccceEEC---CCCCEEEEEecCCCCccc
Confidence                                                  1   11112  2357888999   999988776543     5


Q ss_pred             eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee----------------CCCeEEEEecC
Q 017194          316 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD----------------TSKVVKVYSIS  375 (375)
Q Consensus       316 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------------~dg~v~iw~~~  375 (375)
                      .|++||+.+++..       .+....+    .. +.|+|.+|+++++++                .++.|++|++.
T Consensus       265 ~l~~~d~~~g~~~-------~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          265 VIYKANPETLENE-------EVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEEECTTTCCEE-------EEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             eEEEEECCCCCeE-------EeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            5999999887432       1111111    22 778875888887754                34789999863

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.80  E-value=1.4e-16  Score=128.53  Aligned_cols=190  Identities=11%  Similarity=0.012  Sum_probs=149.4

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecC-ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI  106 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  106 (375)
                      +++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|+.++  +.++.|..||. +++....+...  ....+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--~~~~~   79 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--AGCEM   79 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--TTCEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--CCccc
Confidence            5799999999999999999999999998765 5789999999999877  45788999998 56554444331  13468


Q ss_pred             eEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEec-----CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194          107 NQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRA-----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR  180 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  180 (375)
                      .++.+.++++++++.+. ++.|..+|. +++.+..+..     .+......+++.++|+ ++++...++.|..||.. ++
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-CC
Confidence            88999999999999887 778888886 6777666541     1223455677889998 78899999999999988 99


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      .+..+...              ..+.++...+      ++++++++..++.|..+|..+++....
T Consensus       157 ~~w~~~~~--------------~~~~~~~~~~------~g~~~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          157 LLNSVKLS--------------GTPFSSAFLD------NGDCLVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             EEEEEECS--------------SCCCEEEECT------TSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred             EEEEEECC--------------CCccceeEcC------CCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence            98888743              3455667777      799999888888999999997755433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=1.3e-16  Score=130.86  Aligned_cols=240  Identities=11%  Similarity=-0.018  Sum_probs=164.5

Q ss_pred             ceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcE
Q 017194           49 DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV  127 (375)
Q Consensus        49 ~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (375)
                      ..+..+..+.....+++|+|+++ .++++..++.|..|+..++  .   ..+..+...+.+++++++++++++...++.|
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E---EEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e---EEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence            33455555667788999999998 6777888899999999864  2   2333346678999999999988777777899


Q ss_pred             EEEeCcCceeeeeEec--C-cccceeEEEEeeCCCcEEEE----ee-------------cCCeEEEeeCCCCCcceEEec
Q 017194          128 KIIDIRQHCLYKSLRA--G-HSSICSSVQFIPWKPWEVIS----GG-------------LDSKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       128 ~iwd~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~----~~-------------~d~~i~~wd~~~~~~~~~~~~  187 (375)
                      .+||..+++.......  . ....+..++++|+|. ++++    ++             ..+.|..++.. ++ ...+. 
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~-  168 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI-  168 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE-
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee-
Confidence            9999977765433220  1 123567899999997 6776    33             13466666655 43 33332 


Q ss_pred             CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC-CcceeecccccCCCCCCceeecccccce
Q 017194          188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                      .            .......++|+|      +++.+++.+.++.|.+|++. ++...                       
T Consensus       169 ~------------~~~~~~gi~~s~------dg~~lv~~~~~~~i~~~~~~~~g~~~-----------------------  207 (296)
T 3e5z_A          169 R------------DRVKPNGLAFLP------SGNLLVSDTGDNATHRYCLNARGETE-----------------------  207 (296)
T ss_dssp             C------------CCSSEEEEEECT------TSCEEEEETTTTEEEEEEECSSSCEE-----------------------
T ss_pred             c------------CCCCCccEEECC------CCCEEEEeCCCCeEEEEEECCCCcCc-----------------------
Confidence            1            235678999999      79888777778999999987 22110                       


Q ss_pred             eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccc
Q 017194          267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK  346 (375)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  346 (375)
                                 ......   ..+...+..++++   ++|+++++.  ++.|.+||.. +         +.+..+..+.. 
T Consensus       208 -----------~~~~~~---~~~~~~p~~i~~d---~~G~l~v~~--~~~v~~~~~~-g---------~~~~~~~~~~~-  257 (296)
T 3e5z_A          208 -----------YQGVHF---TVEPGKTDGLRVD---AGGLIWASA--GDGVHVLTPD-G---------DELGRVLTPQT-  257 (296)
T ss_dssp             -----------EEEEEE---CCSSSCCCSEEEB---TTSCEEEEE--TTEEEEECTT-S---------CEEEEEECSSC-
T ss_pred             -----------CCCeEe---eCCCCCCCeEEEC---CCCCEEEEc--CCeEEEECCC-C---------CEEEEEECCCC-
Confidence                       000111   2234456778999   899877766  7889999987 4         33344445555 


Q ss_pred             eeeeeecCCCCCcEEEeeCCCe
Q 017194          347 VNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       347 v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                      +.+++|..++++.|++++.++.
T Consensus       258 ~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             CCEEEEESTTSCEEEEEETTEE
T ss_pred             ceeEEEECCCCCEEEEEcCCeE
Confidence            8899995338888888887753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=7.2e-17  Score=148.47  Aligned_cols=273  Identities=8%  Similarity=-0.053  Sum_probs=174.4

Q ss_pred             cCCCCEEEEeCC-CC----cEEEEecccCceeeEee------ecCccEEEEEEeCCCCeEEEEcCCC-----eEEEEECC
Q 017194           25 RDRPGFVASSGE-DG----CICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVH   88 (375)
Q Consensus        25 ~~~~~~l~s~~~-d~----~i~iw~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~~~~~d~-----~i~iwd~~   88 (375)
                      |+ |++++.... .+    .+.+.+...++....+.      +|...+..++|+|||++|+.+..++     .|++||+.
T Consensus        81 ~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           81 KK-GKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EE-TTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             EE-CCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            77 666554332 22    34444444444332222      2334688999999999998876543     89999999


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCc----------------EEEEeCcCceee--eeEec-Ccccce
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD----------------VKIIDIRQHCLY--KSLRA-GHSSIC  149 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~--~~~~~-~~~~~v  149 (375)
                      +++.....  ..  ...+..++|+||++.|+.++.++.                |++|++.+++..  ..+.. .|...+
T Consensus       160 tg~~~~~~--~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~  235 (710)
T 2xdw_A          160 GAKELPDV--LE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (710)
T ss_dssp             TTEEEEEE--EE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             CCCCCccc--cc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence            87643321  11  223678999999999999887765                999999876532  22220 245567


Q ss_pred             eEEEEeeCCCcEEEEeec-----CCeEEEeeCCC------CC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          150 SSVQFIPWKPWEVISGGL-----DSKLVMWDFSK------GR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      ..+.|+|+|++ |+..+.     +..|++||+.+      +. ....+...             ...+.. .++|     
T Consensus       236 ~~~~~SpDg~~-l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~-------------~~~~~~-~~s~-----  295 (710)
T 2xdw_A          236 GGAELSDDGRY-VLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN-------------FEGEYD-YVTN-----  295 (710)
T ss_dssp             EEEEECTTSCE-EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS-------------SSSCEE-EEEE-----
T ss_pred             EEEEEcCCCCE-EEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC-------------CCcEEE-EEec-----
Confidence            89999999994 555443     57899999986      43 34444422             223333 4666     


Q ss_pred             CCCCEEEEEecC----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC--c
Q 017194          218 KTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT--A  291 (375)
Q Consensus       218 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  291 (375)
                       +++.|+..+..    +.|.+||+.++...                                   .   ...+..|.  .
T Consensus       296 -dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-----------------------------------~---~~~l~~~~~~~  336 (710)
T 2xdw_A          296 -EGTVFTFKTNRHSPNYRLINIDFTDPEES-----------------------------------K---WKVLVPEHEKD  336 (710)
T ss_dssp             -ETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------------------------G---CEEEECCCSSC
T ss_pred             -cCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------------------------c---ceeccCCCCCC
Confidence             67777666543    36999998763100                                   0   11222332  3


Q ss_pred             cEEEEEEeecCCCCcEEEEecCCCe--EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe-e---C
Q 017194          292 AASCVAFSMFGERGKYLISGGNDKL--VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-D---T  365 (375)
Q Consensus       292 ~v~~~~~s~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~---~  365 (375)
                      .+..++|+   +++.++++...|+.  |++|++.+++         .+..+..+.+.+..+.++| +++.++.. +   .
T Consensus       337 ~~~~~~~~---~~~~lv~~~~~~g~~~l~~~~~~~g~---------~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~  403 (710)
T 2xdw_A          337 VLEWVACV---RSNFLVLCYLHDVKNTLQLHDLATGA---------LLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLS  403 (710)
T ss_dssp             EEEEEEEE---TTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECCCSSEEEEEECCT-TCSEEEEEEECSSC
T ss_pred             eEEEEEEE---cCCEEEEEEEECCEEEEEEEECCCCC---------EEEecCCCCceEEEEecCC-CCCEEEEEEeCCCC
Confidence            67888998   78888999988885  5667775653         2233444567788899998 77655532 2   4


Q ss_pred             CCeEEEEec
Q 017194          366 SKVVKVYSI  374 (375)
Q Consensus       366 dg~v~iw~~  374 (375)
                      .+.|+.||+
T Consensus       404 P~~i~~~d~  412 (710)
T 2xdw_A          404 PGIIYHCDL  412 (710)
T ss_dssp             CCEEEEEET
T ss_pred             CCEEEEEEC
Confidence            578999986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=6e-17  Score=148.55  Aligned_cols=274  Identities=9%  Similarity=-0.004  Sum_probs=169.9

Q ss_pred             ecCCCCEEEEeCCCC---cEEEE--ecccCceeeEee------ecCccEEEEEEeCCCCeEEEE-----cCCCeEEEEEC
Q 017194           24 SRDRPGFVASSGEDG---CICWF--DLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYV-----SSGKEVKSFDV   87 (375)
Q Consensus        24 ~~~~~~~l~s~~~d~---~i~iw--~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~~~-----~~d~~i~iwd~   87 (375)
                      +|+ |++++....++   .-.||  +...++....+.      +|...+..++|||||++|+.+     +.+..|++||+
T Consensus        76 ~~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRR-NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEE-TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             EEE-CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            477 66666554432   34444  444444333332      345578999999999999844     33468999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCc-------------EEEEeCcCcee----eeeEecCccccee
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD-------------VKIIDIRQHCL----YKSLRAGHSSICS  150 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~----~~~~~~~~~~~v~  150 (375)
                      .+++.... ..+.  ......++|+||++.|+.++.+..             |++|++.+++.    +.... .+...+.
T Consensus       155 ~tg~~~~~-~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-~~~~~~~  230 (695)
T 2bkl_A          155 DSGEWSKV-DVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-GDPTTFL  230 (695)
T ss_dssp             TTCCBCSS-CCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-CCTTCEE
T ss_pred             CCCCCcCC-cccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC-CCCEEEE
Confidence            98764311 1111  112268999999999999988766             99999987752    22223 3456788


Q ss_pred             EEEEeeCCCcEEEEeecCC----eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194          151 SVQFIPWKPWEVISGGLDS----KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA  226 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  226 (375)
                      .+.|+|+|++ |+..+.++    .|++||..+++. ..+...             ...+....+ +      ++.+++.+
T Consensus       231 ~~~~SpDG~~-l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~-------------~~~~~~~~~-~------~g~l~~~s  288 (695)
T 2bkl_A          231 QSDLSRDGKY-LFVYILRGWSENDVYWKRPGEKDF-RLLVKG-------------VGAKYEVHA-W------KDRFYVLT  288 (695)
T ss_dssp             EEEECTTSCC-EEEEEEETTTEEEEEEECTTCSSC-EEEEEC-------------SSCCEEEEE-E------TTEEEEEE
T ss_pred             EEEECCCCCE-EEEEEeCCCCceEEEEEcCCCCce-EEeecC-------------CCceEEEEe-c------CCcEEEEE
Confidence            9999999995 55555444    677777655543 333322             233444445 3      45544444


Q ss_pred             e---cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-CccEEEEEEeecC
Q 017194          227 K---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFG  302 (375)
Q Consensus       227 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~  302 (375)
                      .   .++.|.+||+.++...                                   .++.  .+..+ ...+..++++   
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~-----------------------------------~~~~--l~~~~~~~~l~~~~~~---  328 (695)
T 2bkl_A          289 DEGAPRQRVFEVDPAKPARA-----------------------------------SWKE--IVPEDSSASLLSVSIV---  328 (695)
T ss_dssp             CTTCTTCEEEEEBTTBCSGG-----------------------------------GCEE--EECCCSSCEEEEEEEE---
T ss_pred             CCCCCCCEEEEEeCCCCCcc-----------------------------------CCeE--EecCCCCCeEEEEEEE---
Confidence            4   2578999998763210                                   0011  11122 4457778886   


Q ss_pred             CCCcEEEEecCCCeEEEEeCC-Cceeeeecchhhhhhhhccc-ccceeeeeecCCCCCcEEE----eeCCCeEEEEecC
Q 017194          303 ERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVV----CDTSKVVKVYSIS  375 (375)
Q Consensus       303 ~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s----~~~dg~v~iw~~~  375 (375)
                       ++.++++...|+..+||.+. .+         .....+..+ .+.+..+.++| +++.|+.    ....+.|++||+.
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g---------~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKG---------KPVRTVQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTC---------CEEEECCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEETT
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCC---------CeeEEecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECC
Confidence             67788999999988888665 23         111222333 56778888888 7776663    3345789999863

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.78  E-value=2.6e-16  Score=127.24  Aligned_cols=240  Identities=8%  Similarity=-0.028  Sum_probs=166.5

Q ss_pred             ceeEEEEecCCCCEEE-EeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           17 TATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      ...+++++++ +++++ +...++.|.+|+..+.........+...+.++++.++++.+++.. ++.|.+||...... ..
T Consensus        25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~  101 (270)
T 1rwi_B           25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TV  101 (270)
T ss_dssp             CEEEEEECTT-CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred             CccceEECCC-CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence            6788999998 77777 557788999999766543322223345678899999998666655 88999999875432 11


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD  175 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd  175 (375)
                      +..  .....+..+++.++++++++...++.|.+|+..+........ .....+.++++++++. ++++...++.|.+||
T Consensus       102 ~~~--~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          102 LPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLE  177 (270)
T ss_dssp             CCC--CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCC-EEEEEGGGTEEEEEC
T ss_pred             eec--CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCC-EEEEECCCCEEEEEe
Confidence            111  113568899999999877777778899999865544332222 2334678999999997 777777788999999


Q ss_pred             CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCC
Q 017194          176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG  255 (375)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  255 (375)
                      ........... .            ....+..+++.+      ++.++++...++.|.+||..+....            
T Consensus       178 ~~~~~~~~~~~-~------------~~~~p~~i~~d~------~g~l~v~~~~~~~v~~~~~~~~~~~------------  226 (270)
T 1rwi_B          178 AESNNQVVLPF-T------------DITAPWGIAVDE------AGTVYVTEHNTNQVVKLLAGSTTST------------  226 (270)
T ss_dssp             TTTCCEEECCC-S------------SCCSEEEEEECT------TCCEEEEETTTSCEEEECTTCSCCE------------
T ss_pred             cCCCceEeecc-c------------CCCCceEEEECC------CCCEEEEECCCCcEEEEcCCCCcce------------
Confidence            87654322111 1            124678899988      6877777777889999998753111            


Q ss_pred             ceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          256 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       256 ~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                                  .....+...+.+++++   ++|+++++...++.|+++++...
T Consensus       227 ----------------------------~~~~~~~~~p~~i~~~---~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          227 ----------------------------VLPFTGLNTPLAVAVD---SDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             ----------------------------ECCCCSCSCEEEEEEC---TTCCEEEEEGGGTEEEEECCCGG
T ss_pred             ----------------------------eeccCCCCCceeEEEC---CCCCEEEEECCCCEEEEEcCCCc
Confidence                                        0111223568899999   89998899999999999998875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=4.7e-16  Score=129.20  Aligned_cols=240  Identities=9%  Similarity=-0.029  Sum_probs=171.4

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      ....+.+..  ++++++...++.|.+||..+++.+.++. .......++++++++..++...++.|.+||..+++....+
T Consensus        45 ~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           45 VAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             CEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            356677753  4666677778999999999999988885 3567889999999854444447899999999986544433


Q ss_pred             cccc--CCCcceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC----
Q 017194           97 ESYN--YNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD----  168 (375)
Q Consensus        97 ~~~~--~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----  168 (375)
                      ..-.  +.......+++  ++..++++.  .++.|.++|+.+++.+..+. . ......++++|+|+ +++++..+    
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-~-g~~p~~i~~~~dG~-l~v~~~~~~~~~  196 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT-I-GIQPTSLVMDKYNK-MWTITDGGYEGS  196 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE-C-SSCBCCCEECTTSE-EEEEBCCBCTTC
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE-c-CCCccceEEcCCCC-EEEEECCCccCC
Confidence            3211  01114556777  344555554  48899999999999888887 3 34567899999997 66666554    


Q ss_pred             ------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          169 ------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       169 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                            +.|.++|..+++....+...            .......++++|      +++.|+++..  .|.+||..+++.
T Consensus       197 ~~~~~~~~v~~id~~t~~v~~~~~~~------------~g~~p~~la~~~------d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTVEKQFKFK------------LGDWPSEVQLNG------TRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEEEEEEECC------------TTCCCEEEEECT------TSCEEEEESS--SEEEEETTCSSC
T ss_pred             ccccCCceEEEEECCCCeEEEEEecC------------CCCCceeEEEec------CCCEEEEEcc--EEEEEECCCCce
Confidence                  78999999988877777643            123678999998      7888888765  899999987532


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC-CCcEEEEe----cCCCeE
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISG----GNDKLV  317 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~l~s~----~~dg~i  317 (375)
                      ...                                      ..+.........++++   | ++.++++.    ..++.|
T Consensus       257 ~~~--------------------------------------~~~~~~~~~p~gi~vd---p~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          257 PVR--------------------------------------PFLEFRDTKYYGLTVN---PNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CSS--------------------------------------CSBCCCSSCEEEEEEC---TTTCCEEEEECTTSSSEEEE
T ss_pred             eee--------------------------------------eeecCCCCceEEEEEc---CCCCeEEEEcccccccCCEE
Confidence            100                                      0111113567889999   7 56666666    678999


Q ss_pred             EEEeCCCce
Q 017194          318 KVWDCSRFQ  326 (375)
Q Consensus       318 ~iwd~~~~~  326 (375)
                      .+||.. ++
T Consensus       296 ~v~d~~-g~  303 (328)
T 3dsm_A          296 YRYSPQ-GK  303 (328)
T ss_dssp             EEECTT-CC
T ss_pred             EEECCC-CC
Confidence            999998 63

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.78  E-value=2.6e-15  Score=126.43  Aligned_cols=284  Identities=12%  Similarity=-0.011  Sum_probs=182.5

Q ss_pred             EEecCCCCEEEEeCC--CC---cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc----------CCCeEEEEE
Q 017194           22 IASRDRPGFVASSGE--DG---CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFD   86 (375)
Q Consensus        22 ~~~~~~~~~l~s~~~--d~---~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~----------~d~~i~iwd   86 (375)
                      ...|+ ++++++...  ..   +|.++|..+++.+..+.....+  .++++||+++++++.          .++.|.+||
T Consensus        27 ~~~~~-~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           27 APGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             cCCCC-CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            34466 666666653  33   8899999999988887754444  999999999998886          357899999


Q ss_pred             CCCCCcccccccc-cC---CCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeee-EecCcccceeEEEEeeCCC
Q 017194           87 VHMPASWRPLESY-NY---NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        87 ~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~  159 (375)
                      ..+.+....+... ..   +......+.|+||+++|+++..  ++.|.++| .+++.+.. +.  ...   ++.+.|+++
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~  177 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAP  177 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCC
Confidence            9876544433321 00   0123457899999999998874  47899999 99988877 65  222   255677776


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCc-eeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF-VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      ..+++.+.||.+.++|. +++......... .      . ....+ .....+.+      ++..++..+.++.+.+.|+.
T Consensus       178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~-~------~-~~~~p~~~~~~~~~------~~~~~~~~~~~~~v~vid~~  242 (373)
T 2mad_H          178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGA-M------L-TAAQNLLTQPAQAN------KSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             ceEEEEcCCCCEEEEEC-CCcEEEEEeccc-c------c-cCCcceeecceeEe------cCCEEEEEcCCceEEEEecc
Confidence            57788889999999999 777664332100 0      0 00111 12234454      34444444477899999997


Q ss_pred             CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee----eecCCCccEEEEEEeecCCCCcEEEEecC-
Q 017194          239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY----SVGGHTAAASCVAFSMFGERGKYLISGGN-  313 (375)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-  313 (375)
                      +........                                +....    ...........++++   |+++.+..+.. 
T Consensus       243 ~~~~~v~~~--------------------------------~~~~~~~~~~~~~~p~g~~~~~~s---~d~~~lyV~~~~  287 (373)
T 2mad_H          243 AAGATNKAP--------------------------------IDALSGGRKADTWRPGGWQQVAYL---KSSDGIYLLTSE  287 (373)
T ss_pred             CCcceEeee--------------------------------eeecCCcccccceecCceEeEEEC---CCCCEEEEEecc
Confidence            532111000                                00000    000012234456788   88887776542 


Q ss_pred             ---------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC-cEEEee-CCCeEEEEecC
Q 017194          314 ---------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS  375 (375)
Q Consensus       314 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~v~iw~~~  375 (375)
                               ++.|.++|..+.+         .+..+ ........++|+| ||+ .++++. .++.|.+||+.
T Consensus       288 ~~~~~~~~~~~~V~VID~~t~~---------vv~~i-~~g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          288 QSAWKLHAAAKEVTSVTGLVGQ---------TSSQI-SLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCcccccCCCCeEEEEECCCCE---------EEEEE-ECCCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence                     3589999999984         33333 2233678999999 888 777777 58999999963

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=9.2e-15  Score=129.19  Aligned_cols=299  Identities=12%  Similarity=0.046  Sum_probs=197.0

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc--cCceeeEeeecCccEEEEEEe----CCCCeEEEEc
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFK----SGNEDIIYVS   77 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~l~~~----~~~~~l~~~~   77 (375)
                      +++.+.++... ..+..+.|+|| ++++++++.|+.|.+||+.  +++.+..+... .....++|+    |+|++++++.
T Consensus       186 t~~v~~~i~~g-~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          186 TYEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGA  262 (567)
T ss_dssp             TCCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCeEEEEEeCC-CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEE
Confidence            45555666543 35678999999 8999999999999999995  77878777753 346789999    6999888776


Q ss_pred             C-CCeEEEEECCCCCccccccccc-------CCCc-ceeEEEEcCCCCeE-EEEeCCCcEEEEeCcCcee--eeeEecCc
Q 017194           78 S-GKEVKSFDVHMPASWRPLESYN-------YNKE-EINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCL--YKSLRAGH  145 (375)
Q Consensus        78 ~-d~~i~iwd~~~~~~~~~~~~~~-------~~~~-~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~--~~~~~~~~  145 (375)
                      . ++++.++|..+.+..+.+....       .|.. .+..+..++++..+ +....+|.|.++|....+.  +..+.  .
T Consensus       263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~  340 (567)
T 1qks_A          263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--A  340 (567)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--C
T ss_pred             ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee--c
Confidence            6 4899999988766555443321       1122 57788888876654 4445679999999876543  22333  3


Q ss_pred             ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec-CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE-
Q 017194          146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-  223 (375)
Q Consensus       146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-  223 (375)
                      ......+.|+|+++++++++..+++|.++|+.+++.+..+.. +.         ..|+..-..+ ++|      ++..+ 
T Consensus       341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~---------~Phpg~g~~~-~~p------~~g~v~  404 (567)
T 1qks_A          341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ---------TPHPGRGANF-VHP------TFGPVW  404 (567)
T ss_dssp             CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS---------SBCCTTCEEE-EET------TTEEEE
T ss_pred             cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc---------CCCCccceee-ECC------CCCcEE
Confidence            445678899999996666666789999999999988887775 31         1122212122 456      54444 


Q ss_pred             EEEe-cCCcEEEEeCCCc-------ceeecccccCCCCCCceeecccccceeeeee-------------eecCCc-----
Q 017194          224 VVAK-GDGVVDVINIESE-------LNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-------------LDQSGG-----  277 (375)
Q Consensus       224 ~~~~-~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~-------------~~~~~~-----  277 (375)
                      +++. .++.|.++|..+.       +........ ......+..+|+++++.....             ++....     
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~  483 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS  483 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence            4443 4689999999872       233332222 122344677899988776331             111111     


Q ss_pred             c-eeEeee-----eecCCCccEEEEEEeecCCCCcEEEEec-----CCCeEEEEeCCCcee
Q 017194          278 K-RLHLDY-----SVGGHTAAASCVAFSMFGERGKYLISGG-----NDKLVKVWDCSRFQG  327 (375)
Q Consensus       278 ~-~~~~~~-----~~~~~~~~v~~~~~s~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~  327 (375)
                      . ..+.+.     .+..-...+..+.|+   ++|+++..+.     .++.|.|+|.++.+.
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          484 DPEFKTLPIAEWAGITEGQPRVVQGEFN---KDGTEVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             CCCEEEECHHHHHTCCSSCCEEEEEEEC---TTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCCcEEeccccccccCCCCcceEeeeEC---CCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence            0 001111     111124578899999   9998877652     379999999999854

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.77  E-value=3.7e-16  Score=126.36  Aligned_cols=238  Identities=8%  Similarity=-0.025  Sum_probs=162.5

Q ss_pred             cEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee
Q 017194           60 PVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY  138 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (375)
                      ...+++++++++.++ +...++.|.+|+..+.... .+.  ..+...+.+++++++++++++.. ++.|.+||...... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLP--FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECC--CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEe--eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-
Confidence            678899999998666 4467789999997653321 111  11235678899999998665555 88999999876543 


Q ss_pred             eeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccC
Q 017194          139 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK  218 (375)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  218 (375)
                      ..+.......+.++++.+++. ++++...++.|.+|+..+........ .            ....+..+++++      
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~-~------------~~~~p~~i~~~~------  159 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPF-T------------GLNDPDGVAVDN------  159 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCC-C------------SCCSCCCEEECT------
T ss_pred             eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeecc-c------------cCCCceeEEEeC------
Confidence            223212335789999999987 77777778899999765443322111 1            123567889988      


Q ss_pred             CCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEE
Q 017194          219 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF  298 (375)
Q Consensus       219 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  298 (375)
                      +++++++...++.|.+||..+....                                        .....+...+..+++
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~~~~----------------------------------------~~~~~~~~~p~~i~~  199 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESNNQV----------------------------------------VLPFTDITAPWGIAV  199 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEE----------------------------------------ECCCSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEecCCCceE----------------------------------------eecccCCCCceEEEE
Confidence            7887777777889999998753211                                        011122256788999


Q ss_pred             eecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          299 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       299 s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +   ++|.++++...++.|.+|+......         ......+...+.++++.+ +|+++++...++.|+++++.
T Consensus       200 d---~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          200 D---EAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             C---TTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCC
T ss_pred             C---CCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCC
Confidence            9   8998888888889999999877521         111222335688999998 88888888899999999863

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.77  E-value=2.6e-14  Score=117.29  Aligned_cols=279  Identities=8%  Similarity=-0.012  Sum_probs=190.4

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceee-EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      ....+.++++.++ +++.++...++.|.+||.. ++... .+..+...+..+++.++++..++...++.|..+|.. ++.
T Consensus        18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            4567899999998 7888877778899999987 55432 122234678999999999877776667899999987 432


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeee-EecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                       ..+. .......+..+++.++++++++...++.|..+|.. ++.... +. .....+..+++.+++. ++++...++.|
T Consensus        95 -~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~i~~d~~g~-l~v~~~~~~~i  169 (300)
T 2qc5_A           95 -TEYP-LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP-NKGSYPAFITLGSDNA-LWFTENQNNSI  169 (300)
T ss_dssp             -EEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS-STTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred             -EEec-CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC-CCCCCceeEEECCCCC-EEEEecCCCeE
Confidence             2221 11123568899999999887777668899999987 554422 22 3446789999999987 66766667899


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      ..||. +++... +....           ....+..+++.+      ++.+.++....+.|.+||.. +...        
T Consensus       170 ~~~~~-~g~~~~-~~~~~-----------~~~~~~~i~~d~------~g~l~v~~~~~~~i~~~~~~-g~~~--------  221 (300)
T 2qc5_A          170 GRITN-TGKLEE-YPLPT-----------NAAAPVGITSGN------DGALWFVEIMGNKIGRITTT-GEIS--------  221 (300)
T ss_dssp             EEECT-TCCEEE-EECSS-----------TTCCEEEEEECT------TSSEEEEETTTTEEEEECTT-CCEE--------
T ss_pred             EEECC-CCcEEE-eeCCC-----------CCCCcceEEECC------CCCEEEEccCCCEEEEEcCC-CcEE--------
Confidence            99998 554433 33210           124578899987      68777766667789999983 2110        


Q ss_pred             CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec
Q 017194          252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  331 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  331 (375)
                                                   .  ..+..+...+.+++++   ++|++.++...++.|..|+.. ++..   
T Consensus       222 -----------------------------~--~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~~-g~~~---  263 (300)
T 2qc5_A          222 -----------------------------E--YDIPTPNARPHAITAG---KNSEIWFTEWGANQIGRITND-NTIQ---  263 (300)
T ss_dssp             -----------------------------E--EECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEECTT-SCEE---
T ss_pred             -----------------------------E--EECCCCCCCceEEEEC---CCCCEEEeccCCCeEEEECCC-CcEE---
Confidence                                         0  1122334567899999   899887777778999999984 3211   


Q ss_pred             chhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          332 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       332 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                           ..........+.++++.+ +|+++++.. . .|..++.
T Consensus       264 -----~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          264 -----EYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             -----EEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEEEE
T ss_pred             -----EEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEeCC
Confidence                 001122345678888988 787655554 4 6766654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.75  E-value=7.8e-15  Score=121.36  Aligned_cols=251  Identities=10%  Similarity=0.070  Sum_probs=167.4

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEE-------eCCCCcEEEEecccCceeeEee----ecCccEEEEEEeCC-CCeEEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVAS-------SGEDGCICWFDLRSKDVQLVTD----VGNGPVTSLCFKSG-NEDIIYV   76 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s-------~~~d~~i~iw~~~~~~~~~~~~----~~~~~v~~l~~~~~-~~~l~~~   76 (375)
                      ..+...-....+++|+++ +.++++       +..++.|.+||..+++......    ++...+..++++++ ++.+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~   89 (314)
T 1pjx_A           11 TKVTEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD   89 (314)
T ss_dssp             EEEECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred             hhhhccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE
Confidence            344545556789999988 777777       5677899999988777533221    14467899999999 7645444


Q ss_pred             cCCCeEEEEECCCCCcccc-ccccc-CCCcceeEEEEcCCCCeEEEEeCC---------------CcEEEEeCcCceeee
Q 017194           77 SSGKEVKSFDVHMPASWRP-LESYN-YNKEEINQIVCNPKSSFLACADDG---------------GDVKIIDIRQHCLYK  139 (375)
Q Consensus        77 ~~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~  139 (375)
                       ..+.|.+||.+ ++.... ..... .....+.+++++++++++++...+               +.|..+|.. ++...
T Consensus        90 -~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A           90 -MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             -TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             -CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence             45589999987 543222 21111 112458899999999877776554               567778765 54433


Q ss_pred             eEecCcccceeEEEEe----eCCCcEEEEeecCCeEEEeeCC-CCCcce--EEe-cCCCCCCCCCCcccCC-CceeEEee
Q 017194          140 SLRAGHSSICSSVQFI----PWKPWEVISGGLDSKLVMWDFS-KGRPNK--IVN-FGLPENNGNAGQCYNP-AFVHAIAI  210 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~----~~~~~~l~~~~~d~~i~~wd~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~-~~v~~~~~  210 (375)
                      ...  +......++++    |+++.++++...++.|.+||+. .++...  .+. ..           .+. ..+..+++
T Consensus       167 ~~~--~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~p~~i~~  233 (314)
T 1pjx_A          167 VDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-----------GTHEGGADGMDF  233 (314)
T ss_dssp             EEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-----------CCSSCEEEEEEE
T ss_pred             ecc--CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-----------CCCCCCCCceEE
Confidence            332  34456889999    9986445555678999999986 343211  111 11           011 45678899


Q ss_pred             cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194          211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT  290 (375)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
                      ++      +++++++...++.|.+||..+++.                                        ...+..+.
T Consensus       234 d~------~G~l~v~~~~~~~i~~~d~~~g~~----------------------------------------~~~~~~~~  267 (314)
T 1pjx_A          234 DE------DNNLLVANWGSSHIEVFGPDGGQP----------------------------------------KMRIRCPF  267 (314)
T ss_dssp             BT------TCCEEEEEETTTEEEEECTTCBSC----------------------------------------SEEEECSS
T ss_pred             CC------CCCEEEEEcCCCEEEEEcCCCCcE----------------------------------------eEEEeCCC
Confidence            88      788888877888999999875321                                        11223344


Q ss_pred             ccEEEEEEeecCCCCc-EEEEecCCCeEEEEeCCCc
Q 017194          291 AAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       291 ~~v~~~~~s~~~~~~~-~l~s~~~dg~i~iwd~~~~  325 (375)
                      ..+.+++++   ++++ ++++...++.|..|++...
T Consensus       268 ~~~~~i~~~---~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          268 EKPSNLHFK---PQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SCEEEEEEC---TTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCceeEEEC---CCCCEEEEEeCCCCeEEEEeCCCC
Confidence            678999998   8998 4555666789999998753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=2e-15  Score=121.82  Aligned_cols=223  Identities=13%  Similarity=0.032  Sum_probs=155.7

Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcccccccccCCC-cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc-c
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-S  146 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~  146 (375)
                      .++.|++++.++.|.+||.++++....+..   +. ..+.++.++|+|++++  +.++.|..||. +++.+..+. .+ .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~---~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~-~~~~   76 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL---EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIA-APAG   76 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC---CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEE-CCTT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC---CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEc-CCCC
Confidence            457899999999999999988765544433   23 4688999999999888  35678999998 899999998 44 3


Q ss_pred             cceeEEEEeeCCCcEEEEeec-CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194          147 SICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV  225 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  225 (375)
                      ..+.++.+.++|+ ++++.+. ++.|..+|. +++.+..+..... .   ..   .......+++.+      +++++++
T Consensus        77 ~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~-~---~~---~~~~~~~v~~~~------~G~~lv~  141 (276)
T 3no2_A           77 CEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETG-I---ER---PHAQFRQINKNK------KGNYLVP  141 (276)
T ss_dssp             CEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCEEEEEEECCS-C---SS---GGGSCSCCEECT------TSCEEEE
T ss_pred             ccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCC-C---Cc---ccccccCceECC------CCCEEEE
Confidence            5788999999998 6777776 788888885 6888887765310 0   00   011234455666      7999999


Q ss_pred             EecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194          226 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG  305 (375)
Q Consensus       226 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  305 (375)
                      ...++.|..||.. ++..                                        .++... ....++.+.   ++|
T Consensus       142 ~~~~~~v~~~d~~-G~~~----------------------------------------w~~~~~-~~~~~~~~~---~~g  176 (276)
T 3no2_A          142 LFATSEVREIAPN-GQLL----------------------------------------NSVKLS-GTPFSSAFL---DNG  176 (276)
T ss_dssp             ETTTTEEEEECTT-SCEE----------------------------------------EEEECS-SCCCEEEEC---TTS
T ss_pred             ecCCCEEEEECCC-CCEE----------------------------------------EEEECC-CCccceeEc---CCC
Confidence            9999999999988 5322                                        223222 233455666   899


Q ss_pred             cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc-cccceeeeeecCCCCCcEEEe
Q 017194          306 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       306 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~  363 (375)
                      +++++++.++.|..+|..+++..........    .+ ....+..++..+ +|..+++.
T Consensus       177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~----~~~~l~~~~~~~~~~-~G~i~v~~  230 (276)
T 3no2_A          177 DCLVACGDAHCFVQLNLESNRIVRRVNANDI----EGVQLFFVAQLFPLQ-NGGLYICN  230 (276)
T ss_dssp             CEEEECBTTSEEEEECTTTCCEEEEEEGGGS----BSCCCSEEEEEEECT-TSCEEEEE
T ss_pred             CEEEEeCCCCeEEEEeCcCCcEEEEecCCCC----CCccccccccceEcC-CCCEEEEe
Confidence            9999999889999999998865432211110    00 112356666666 77766665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=1.5e-15  Score=127.49  Aligned_cols=223  Identities=11%  Similarity=0.012  Sum_probs=146.3

Q ss_pred             CceeEEEEecCCCCEEEEeCCC---C--cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC-----------
Q 017194           16 ATATCCIASRDRPGFVASSGED---G--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-----------   79 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d---~--~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----------   79 (375)
                      ..+.+++|+|| |+.||.++.+   +  .|.+|++.+++....... .. +..++|+|+|+.|+.++.+           
T Consensus        59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            45788999999 8888877643   3  488888888776555444 34 9999999999999887632           


Q ss_pred             ----------------CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC-------cEEEEeCcCce
Q 017194           80 ----------------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-------DVKIIDIRQHC  136 (375)
Q Consensus        80 ----------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~  136 (375)
                                      ..|++||+.+++....+..    . .+..+.|+|++ +++++..++       ...+|.+.+++
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~  209 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK  209 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC----C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence                            5799999987653233322    2 68889999999 777775542       34455444554


Q ss_pred             eeeeEecCcccceeEEEEeeCCCcEEEEeecC--------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE-
Q 017194          137 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA-  207 (375)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-  207 (375)
                      . ..+. .+ ..+..+  +|+|+. |+.++.+        ..|.+||  +++. ..+...            +...+.. 
T Consensus       210 ~-~~l~-~~-~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~------------~~~~~~~~  268 (347)
T 2gop_A          210 E-EKMF-EK-VSFYAV--DSDGER-ILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDE------------VDRGVGQA  268 (347)
T ss_dssp             E-EEEE-EE-ESEEEE--EECSSC-EEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTT------------CCSEEEEE
T ss_pred             e-EEec-cC-cceeeE--CCCCCE-EEEEEccccCCccccceEEEEC--CCce-Eecccc------------CCcccCCc
Confidence            4 3444 34 445544  999984 6555533        4688888  4432 222211            2345665 


Q ss_pred             EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec
Q 017194          208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG  287 (375)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~  287 (375)
                      +.|+       ++ ++++++.++.+++| +.++.                                        . ..+.
T Consensus       269 ~~~s-------dg-~~~~~~~~~~~~l~-~~~g~----------------------------------------~-~~~~  298 (347)
T 2gop_A          269 KIKD-------GK-VYFTLFEEGSVNLY-IWDGE----------------------------------------I-KPIA  298 (347)
T ss_dssp             EEET-------TE-EEEEEEETTEEEEE-EESSS----------------------------------------E-EEEE
T ss_pred             cEEc-------Cc-EEEEEecCCcEEEE-EcCCc----------------------------------------e-EEEe
Confidence            7775       36 88999999999999 76321                                        0 1222


Q ss_pred             CCCccEEEEEEeecCCCCcEEEEecCCCeE-EEEeCC
Q 017194          288 GHTAAASCVAFSMFGERGKYLISGGNDKLV-KVWDCS  323 (375)
Q Consensus       288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i-~iwd~~  323 (375)
                      .+...|.+++|+   |  .++++++.++.. .+|.+.
T Consensus       299 ~~~~~v~~~~~s---~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          299 KGRHWIMGFDVD---E--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             CSSSEEEEEEES---S--SEEEEEECSSSCCEEEEES
T ss_pred             cCCCeEEeeeee---C--cEEEEEcCCCChHHheEeC
Confidence            346778999999   7  577776666554 666655

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.73  E-value=3e-15  Score=126.57  Aligned_cols=267  Identities=13%  Similarity=0.058  Sum_probs=179.2

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc----------CCCeEEEEECCCCCcccccccc-cC---CC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPASWRPLESY-NY---NK  103 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-~~---~~  103 (375)
                      +.|.++|..+++.+..+.....+  .+.++||+++++++.          .++.|.++|..+.+....+..- ..   ..
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            69999999999999999876666  899999999988876          3678999999987665544321 00   01


Q ss_pred             cceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194          104 EEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  181 (375)
                      .....+.++||+++++++..  ++.|.+.|+.+++.+..+. .-.    +....|+++..+++.+.||++.+.+..+++.
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPD----CYHIFPASPTVFYMNCRDGSLARVDFADGET  251 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence            23567899999999999874  5789999999999998887 321    1345566655778888899999999866655


Q ss_pred             ceEE----ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce
Q 017194          182 NKIV----NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ  257 (375)
Q Consensus       182 ~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      ....    ...            .......+.+.+      ++..++..+..+.+.+.|...........          
T Consensus       252 ~~~~~~~~~v~------------~~p~~~~~~~~~------dg~~~~~~s~~g~V~ViD~~~~~~~v~~~----------  303 (426)
T 3c75_H          252 KVTNTEVFHTE------------DELLINHPAFSL------RSGRLVWPTYTGKIFQADLTAEGATFRAP----------  303 (426)
T ss_dssp             EEEECCCCSCT------------TSCBCSCCEECT------TTCEEEEEBTTSEEEEEEECSSCEEECCC----------
T ss_pred             EEEeeeeeccC------------CCceeeEeeecC------CCCEEEEEeCCCcEEEEeccCCceEEeee----------
Confidence            4321    111            001112345566      67777777788999999987542211000          


Q ss_pred             eecccccceeeeeeeecCCcceeEeee----eecCCCccEEEEEEeecCCCCcEEEEecC----------CCeEEEEeCC
Q 017194          258 STSKVNIRDAEMEILDQSGGKRLHLDY----SVGGHTAAASCVAFSMFGERGKYLISGGN----------DKLVKVWDCS  323 (375)
Q Consensus       258 ~~s~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~l~s~~~----------dg~i~iwd~~  323 (375)
                                            .....    ...........++++   |+++.++....          ++.|.+.|..
T Consensus       304 ----------------------~~~~~~~~i~~g~~p~g~~~va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          304 ----------------------IEALTEAERADDWRPGGWQQTAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             ----------------------EESSCTTTGGGTEEECSSSCEEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             ----------------------eeeccccccccccccCCceeeEEc---CCCCEEEEEecccccccccCCCCEEEEEECC
Confidence                                  00000    000001111235788   88876665532          4579999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCC-cEEEee-CCCeEEEEecC
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS  375 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~v~iw~~~  375 (375)
                      +.+         .+..+. -......++|+| |++ +++++. .++.|.++|+.
T Consensus       359 T~k---------vv~~I~-vg~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          359 TGE---------RINKIE-LGHEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             TCC---------EEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETT
T ss_pred             CCe---------EEEEEE-CCCCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECC
Confidence            984         333332 223588999999 888 788877 58999999963

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.72  E-value=7.4e-15  Score=121.92  Aligned_cols=286  Identities=15%  Similarity=0.073  Sum_probs=182.9

Q ss_pred             EEEecCCCCEEEEeCC-----CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc----------CCCeEEEE
Q 017194           21 CIASRDRPGFVASSGE-----DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSF   85 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~----------~d~~i~iw   85 (375)
                      ....|+ ++.++....     ++.|.+.|..+++.+..+.....+ . ++++|+|++++++.          .++.|.+|
T Consensus        38 ~~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCC-CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            455687 666666544     679999999999999999876666 4 99999999988775          35789999


Q ss_pred             ECCCCCcccccccccC----CCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           86 DVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      |..+.+....+..-.+    .......+.|+|||++++++..  ++.|.++|+.+++.+.++. ...  .  ....|.+.
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g--~--~~~~P~g~  189 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPD--C--YHIFPTAP  189 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS--E--EEEEEEET
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCC--c--ceeecCCC
Confidence            9998765555433210    0124567999999999998864  6899999999999999887 322  1  22335554


Q ss_pred             cEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCce-eEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          160 WEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFV-HAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      ..+++.+.||++.+.++.. ++...... .  ....      ....+ ....|.+     ++|++++ .+.+|.+++.|+
T Consensus       190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~--~~~~------~~~~~~~~~~~~~-----~dG~~~~-vs~~g~V~v~d~  254 (386)
T 3sjl_D          190 DTFFMHCRDGSLAKVAFGTEGTPEITHT-E--VFHP------EDEFLINHPAYSQ-----KAGRLVW-PTYTGKIHQIDL  254 (386)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEEC-C--CCSC------TTSCBCSCCEEET-----TTTEEEE-EBTTSEEEEEEC
T ss_pred             ceeEEECCCCCEEEEECCCCCeEEEeec-c--eecc------ccccccccceeEc-----CCCcEEE-EeCCCEEEEEEC
Confidence            4678888999999999976 55432111 0  0000      00111 1124432     1676555 555899999999


Q ss_pred             CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee----ecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS----VGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      .+........                                +.....    ..-.......++++   ++++.+.....
T Consensus       255 ~~~~~~v~~~--------------------------------~~~~~~~~~~~g~~p~g~q~~a~~---~~~~~lyV~~~  299 (386)
T 3sjl_D          255 SSGDAKFLPA--------------------------------VEALTEAERADGWRPGGWQQVAYH---RALDRIYLLVD  299 (386)
T ss_dssp             TTSSCEECCC--------------------------------EESSCHHHHHTTEEECSSSCEEEE---TTTTEEEEEEE
T ss_pred             CCCcceeecc--------------------------------eeccccccccccccCCCcceeeEC---CCCCeEEEEec
Confidence            7643211000                                000000    00001222346667   78777766532


Q ss_pred             ----------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC-cEEEe-eCCCeEEEEecC
Q 017194          314 ----------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVC-DTSKVVKVYSIS  375 (375)
Q Consensus       314 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~-~~dg~v~iw~~~  375 (375)
                                .+.|.+.|+.+.+         .+..+. -...+..+++++ |++ +|+++ ..++.|.++|..
T Consensus       300 ~~~~~~hk~~~~~V~viD~~t~k---------v~~~i~-vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          300 QRDEWRHKTASRFVVVLDAKTGE---------RLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCC---------EEEEEE-EEEEECEEEECS-SSSCEEEEEETTTTEEEEEETT
T ss_pred             cccccccCCCCCEEEEEECCCCe---------EEEEEE-CCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence                      3579999999984         332222 234788999999 876 56664 568999999863

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.72  E-value=3e-15  Score=138.25  Aligned_cols=245  Identities=12%  Similarity=0.033  Sum_probs=160.9

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCC-----CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe-------
Q 017194           14 HKATATCCIASRDRPGFVASSGED-----GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE-------   81 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~-------   81 (375)
                      |...+..++|||| |++||.+..+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.       
T Consensus       161 ~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          161 GATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             --EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            4446889999999 8888876543     4699999999987543 222223457899999 99988876543       


Q ss_pred             -------EEEEECCCCCcc-cccccccCCCcceeEEEEcCCCCeEEEEeCCC-----cEEEEeCcCc--eeeeeEecCcc
Q 017194           82 -------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQH--CLYKSLRAGHS  146 (375)
Q Consensus        82 -------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~~~~~~  146 (375)
                             |++|++.++... ..+.....+...+..+.|+|||++|+..+.++     .|++||+.++  +....+. .+.
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~  316 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDL  316 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCC
Confidence                   899999876432 12222222333588999999999988877543     8999999876  3145555 455


Q ss_pred             cceeEEEEeeCCCcEEEEeec----CCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC
Q 017194          147 SICSSVQFIPWKPWEVISGGL----DSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK  221 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  221 (375)
                      ..+... +.|+++ .|+..+.    ++.|.+||+.++. ....+...            +...+..+.+.       ++.
T Consensus       317 ~~~~~~-~~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~------------~~~~l~~~~~~-------~~~  375 (741)
T 1yr2_A          317 KAQWDF-VDGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE------------SKDNLESVGIA-------GNR  375 (741)
T ss_dssp             SSCEEE-EEEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECC------------CSSEEEEEEEE-------BTE
T ss_pred             CceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecC------------CCCeEEEEEEE-------CCE
Confidence            455554 348888 4555554    4569999988752 33333322            23345666665       377


Q ss_pred             EEEEEecCCcEEEEeCCC-cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEe
Q 017194          222 ICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFS  299 (375)
Q Consensus       222 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s  299 (375)
                      ++++...++..++|.+.. +.                                        ....+.. +...+..+.++
T Consensus       376 lv~~~~~dg~~~l~~~~~~g~----------------------------------------~~~~l~~~~~~~v~~~~~s  415 (741)
T 1yr2_A          376 LFASYIHDAKSQVLAFDLDGK----------------------------------------PAGAVSLPGIGSASGLSGR  415 (741)
T ss_dssp             EEEEEEETTEEEEEEEETTSC----------------------------------------EEEECBCSSSCEEEEEECC
T ss_pred             EEEEEEECCEEEEEEEeCCCC----------------------------------------ceeeccCCCCeEEEEeecC
Confidence            888888898877775541 11                                        1112322 25668888888


Q ss_pred             ecCCCCcEEE----EecCCCeEEEEeCCCce
Q 017194          300 MFGERGKYLI----SGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       300 ~~~~~~~~l~----s~~~dg~i~iwd~~~~~  326 (375)
                         |+++.|+    +....+.|++||+.+++
T Consensus       416 ---~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          416 ---PGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ---BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ---CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence               7877665    33456889999998875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.71  E-value=6.5e-15  Score=136.05  Aligned_cols=272  Identities=10%  Similarity=0.005  Sum_probs=166.3

Q ss_pred             ecCCCCEEEEeCCCC---cEEEEecc-----cCceeeEe------eecCccEEEEEEeCCCCeEEEEcCC-----CeEEE
Q 017194           24 SRDRPGFVASSGEDG---CICWFDLR-----SKDVQLVT------DVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKS   84 (375)
Q Consensus        24 ~~~~~~~l~s~~~d~---~i~iw~~~-----~~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~d-----~~i~i   84 (375)
                      +|+ |++++....++   .-.||...     .++....+      .+|...+..++|+|||++|+.++.+     ..|++
T Consensus       115 ~pd-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRR-GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEE-TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             EEE-CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            477 67766554332   25555543     33332222      2233478899999999999887654     36999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCc--------------EEEEeCcCcee--eeeEec-Cccc
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD--------------VKIIDIRQHCL--YKSLRA-GHSS  147 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~--~~~~~~-~~~~  147 (375)
                      ||+.+++....  ..  +...+..++|+|| +.|+.+..++.              |++|++.++..  ...+.. .+..
T Consensus       194 ~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~  268 (741)
T 1yr2_A          194 VGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK  268 (741)
T ss_dssp             EETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             EECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence            99998765322  11  1223467899999 99888876554              89999876652  222220 2333


Q ss_pred             ceeEEEEeeCCCcEEEEeecC-----CeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          148 ICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      .+..+.|+|+|++ |+..+.+     ..|++||+.++  +....+...             ....... ++|      ++
T Consensus       269 ~~~~~~~SpDG~~-l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~~~-~~~------dg  327 (741)
T 1yr2_A          269 RGHGASVSSDGRW-VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-------------LKAQWDF-VDG------VG  327 (741)
T ss_dssp             CEEEEEECTTSCE-EEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-------------SSSCEEE-EEE------ET
T ss_pred             EEEEEEECCCCCE-EEEEEEccCCCcceEEEEECCCCCCcccEEecCC-------------CCceEEE-Eec------cC
Confidence            5889999999994 5555433     48999999876  314444422             2223333 235      68


Q ss_pred             CEEEEEecC----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194          221 KICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV  296 (375)
Q Consensus       221 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  296 (375)
                      +.|+..+.+    +.|.+||+.++.                                    .  .....+..+...+..+
T Consensus       328 ~~l~~~s~~~~~~~~l~~~d~~~~~------------------------------------~--~~~~l~~~~~~~l~~~  369 (741)
T 1yr2_A          328 DQLWFVSGDGAPLKKIVRVDLSGST------------------------------------P--RFDTVVPESKDNLESV  369 (741)
T ss_dssp             TEEEEEECTTCTTCEEEEEECSSSS------------------------------------C--EEEEEECCCSSEEEEE
T ss_pred             CEEEEEECCCCCCCEEEEEeCCCCc------------------------------------c--ccEEEecCCCCeEEEE
Confidence            877777653    459999987531                                    0  1111223344456677


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeCC-Cceeeeecchhhhhhhhcc-cccceeeeeecCCCCCcEEE----eeCCCeEE
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVV----CDTSKVVK  370 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s----~~~dg~v~  370 (375)
                      +++    ++.++++...|+..+||.+. ++.         ....+.. ..+.+..+.++| +++.|+.    ....++|+
T Consensus       370 ~~~----~~~lv~~~~~dg~~~l~~~~~~g~---------~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~  435 (741)
T 1yr2_A          370 GIA----GNRLFASYIHDAKSQVLAFDLDGK---------PAGAVSLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVL  435 (741)
T ss_dssp             EEE----BTEEEEEEEETTEEEEEEEETTSC---------EEEECBCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEE
T ss_pred             EEE----CCEEEEEEEECCEEEEEEEeCCCC---------ceeeccCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEE
Confidence            776    56788888889987777654 231         1122222 356788899998 7776663    23457899


Q ss_pred             EEec
Q 017194          371 VYSI  374 (375)
Q Consensus       371 iw~~  374 (375)
                      +||+
T Consensus       436 ~~d~  439 (741)
T 1yr2_A          436 ALDP  439 (741)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.70  E-value=9.5e-14  Score=118.55  Aligned_cols=265  Identities=8%  Similarity=-0.002  Sum_probs=167.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC--eEEEEECCCCCcc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASW   93 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~   93 (375)
                      .....|+|+++ ++++++...++.|++||..++........ ..... ++|+++++.|+++..++  .|.+++...+...
T Consensus       131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            35778999998 78888888889999999987776554443 33334 99999999988888765  7888887754332


Q ss_pred             cccccccC-CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeee----EecCcccce-e-EEEEeeCCCcEEEEee
Q 017194           94 RPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS----LRAGHSSIC-S-SVQFIPWKPWEVISGG  166 (375)
Q Consensus        94 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v-~-~~~~~~~~~~~l~~~~  166 (375)
                      ..+..... ....+.+++++|++..|+++..++.|+.||..++.....    .. ++...- . .++|+|++..++++-.
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~-g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS-GSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC-SCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc-CCCCCCccccEEEeCCCCEEEEEeC
Confidence            22211111 345678899999655666677788999999987653222    11 222222 3 9999996554677777


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCC---CCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcce
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGN---AGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELN  242 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  242 (375)
                      .++.|+.|+....  ...+. +.......   ......-.....++++|      +++++++-. .++.|+.|++.++..
T Consensus       287 ~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~------dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDE------DGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECT------TCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeC------CCCEEEEeCCCCCEEEEEECCCCEE
Confidence            8899999997643  22222 21100000   00000113478899988      788777777 789999999766432


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                      ...........      ..+|                    ......-.....++++   ++|.++++-..++.|+.+++
T Consensus       358 ~~~~g~~~~~g------~~~g--------------------~~~~~~~~~P~giavd---~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 STVAGQVDVAS------QIDG--------------------TPLEATFNYPYDICYD---GEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEECTTCBS------CCCB--------------------STTTCCBSSEEEEEEC---SSSEEEEEESTTCEEEEEEE
T ss_pred             EEEeCCCCCCC------cCCC--------------------ChhceEeCCceEEEEc---CCCCEEEEECCCCeEEEEEe
Confidence            21111000000      0000                    0011113457899999   88988888888899988875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.70  E-value=5.2e-14  Score=116.38  Aligned_cols=246  Identities=11%  Similarity=0.057  Sum_probs=161.1

Q ss_pred             cCccEEEEEEeCCCCeEEE-------EcCCCeEEEEECCCCCccccccc--ccCCCcceeEEEEcCC-CCeEEEEeCCCc
Q 017194           57 GNGPVTSLCFKSGNEDIIY-------VSSGKEVKSFDVHMPASWRPLES--YNYNKEEINQIVCNPK-SSFLACADDGGD  126 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  126 (375)
                      .-....+++|.++++.+++       ...++.|.+||..+++.. .+..  ..++...+..++++++ ++++++. ....
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~   93 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLG   93 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEE-TTTE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEE-CCCC
Confidence            3445678999999987776       466789999998766532 2111  0113456889999999 6544444 4457


Q ss_pred             EEEEeCcCceeeee-Eec---CcccceeEEEEeeCCCcEEEEeecC---------------CeEEEeeCCCCCcceEEec
Q 017194          127 VKIIDIRQHCLYKS-LRA---GHSSICSSVQFIPWKPWEVISGGLD---------------SKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       127 i~iwd~~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~~l~~~~~d---------------~~i~~wd~~~~~~~~~~~~  187 (375)
                      |.+||.+ ++.... ...   .....+.++++.+++. ++++...+               +.|..||.. ++...... 
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-  169 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-  169 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence            9999987 655332 220   1124588999999997 56665544               567777765 44332222 


Q ss_pred             CCCCCCCCCCcccCCCceeEEeec----CCccccCCCCEEEEE-ecCCcEEEEeCC-CcceeecccccCCCCCCceeecc
Q 017194          188 GLPENNGNAGQCYNPAFVHAIAIP----DADMLDKTNKICVVA-KGDGVVDVINIE-SELNISRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~l~~~-~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~s~  261 (375)
                      .             ......++++    |      +++.++++ ..++.|.+||.. ++...                  
T Consensus       170 ~-------------~~~~~~i~~~~~~d~------dg~~l~v~~~~~~~i~~~~~~~~g~~~------------------  212 (314)
T 1pjx_A          170 A-------------FQFPNGIAVRHMNDG------RPYQLIVAETPTKKLWSYDIKGPAKIE------------------  212 (314)
T ss_dssp             E-------------ESSEEEEEEEECTTS------CEEEEEEEETTTTEEEEEEEEETTEEE------------------
T ss_pred             C-------------CCCcceEEEecccCC------CCCEEEEEECCCCeEEEEECCCCCccc------------------
Confidence            1             2345788888    7      68666555 567899999976 22100                  


Q ss_pred             cccceeeeeeeecCCcceeEeeeeecCCC-ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhh
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN  340 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  340 (375)
                                       .......+..+. ..+..++++   ++|+++++...++.|.+||..++         +.+..+
T Consensus       213 -----------------~~~~~~~~~~~~~~~p~~i~~d---~~G~l~v~~~~~~~i~~~d~~~g---------~~~~~~  263 (314)
T 1pjx_A          213 -----------------NKKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIEVFGPDGG---------QPKMRI  263 (314)
T ss_dssp             -----------------EEEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEEEECTTCB---------SCSEEE
T ss_pred             -----------------cceEEEECCCCCCCCCCceEEC---CCCCEEEEEcCCCEEEEEcCCCC---------cEeEEE
Confidence                             011222344443 567889999   89998888877889999999866         333333


Q ss_pred             cccccceeeeeecCCCCCcEE-EeeCCCeEEEEecC
Q 017194          341 INLNKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS  375 (375)
Q Consensus       341 ~~~~~~v~~~~~~~~~~~~l~-s~~~dg~v~iw~~~  375 (375)
                      ..+...+.+++++| +++.|+ +...++.|..|+++
T Consensus       264 ~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          264 RCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred             eCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence            44557789999988 888454 45567889988863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=3e-13  Score=110.90  Aligned_cols=240  Identities=5%  Similarity=-0.035  Sum_probs=165.9

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC  136 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (375)
                      +...+.++++.++|+..++...++.|.+||.. ++. ..+. ...+...+..+++.+++.++++...++.|..||.. ++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            45678999999999877776667899999987 432 2221 11234678899999999887777668889999986 33


Q ss_pred             eeeeEec-CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          137 LYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       137 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      . ..+.. .....+.++++.+++. ++++...++.|..||. +++.. .+....           ....+..+++.+   
T Consensus        89 ~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~-~~~~~~-----------~~~~~~~i~~~~---  150 (299)
T 2z2n_A           89 I-KEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIR-EYELPN-----------KGSYPSFITLGS---  150 (299)
T ss_dssp             E-EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEE-EEECSS-----------TTCCEEEEEECT---
T ss_pred             E-EEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEE-EecCCC-----------CCCCCceEEEcC---
Confidence            2 22320 2445789999999887 6777667889999998 55433 222110           134678999988   


Q ss_pred             ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEE
Q 017194          216 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC  295 (375)
Q Consensus       216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  295 (375)
                         +++++++...++.|..||. +++..                                     .  ..+......+..
T Consensus       151 ---~g~l~v~~~~~~~i~~~~~-~g~~~-------------------------------------~--~~~~~~~~~~~~  187 (299)
T 2z2n_A          151 ---DNALWFTENQNNAIGRITE-SGDIT-------------------------------------E--FKIPTPASGPVG  187 (299)
T ss_dssp             ---TSCEEEEETTTTEEEEECT-TCCEE-------------------------------------E--EECSSTTCCEEE
T ss_pred             ---CCCEEEEeCCCCEEEEEcC-CCcEE-------------------------------------E--eeCCCCCCccee
Confidence               6887777777789999998 43211                                     0  012233456788


Q ss_pred             EEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       296 ~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ++++   ++|++.++...++.|.+||. +++..      .  .....+...+.++++.+ +|+.+++...++.|..|+.
T Consensus       188 i~~~---~~g~l~v~~~~~~~i~~~~~-~g~~~------~--~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          188 ITKG---NDDALWFVEIIGNKIGRITT-SGEIT------E--FKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEC---TTSSEEEEETTTTEEEEECT-TCCEE------E--EECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET
T ss_pred             EEEC---CCCCEEEEccCCceEEEECC-CCcEE------E--EECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC
Confidence            9999   89988888777889999999 55321      0  01223446788999998 7876666657788988874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.67  E-value=4.1e-13  Score=109.94  Aligned_cols=206  Identities=12%  Similarity=0.141  Sum_probs=137.1

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      +..+..--.+..|+|+++.++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||.+++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            3344455668899997577788888889999999987764 3333 4578999999999995544 4 578999999875


Q ss_pred             Cccccccccc--CCCcceeEEEEcCCCCeEEEEeCC---------CcEEEEeCcC-ceeeeeEecCcccceeEEEEeeCC
Q 017194           91 ASWRPLESYN--YNKEEINQIVCNPKSSFLACADDG---------GDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        91 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~  158 (375)
                      +. ..+....  .....+..++++|+|+++++....         ..-.+|.+.. ++... +. ......+.++|+|++
T Consensus        84 ~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~~~~pngi~~spdg  160 (297)
T 3g4e_A           84 SA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQVDISNGLDWSLDH  160 (297)
T ss_dssp             EE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EEESBEEEEEECTTS
T ss_pred             cE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee-eccccccceEEcCCC
Confidence            43 2222211  113457899999999866654321         2234444432 33332 33 244567899999999


Q ss_pred             CcEEEEeecCCeEEEeeC--CCCCcce--EE-ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          159 PWEVISGGLDSKLVMWDF--SKGRPNK--IV-NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~--~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      +.++++.+.++.|..||+  .++....  .+ ....           ....+..+++.+      +|++.++....+.|.
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-----------~~~~p~g~~~d~------~G~lwva~~~~~~v~  223 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-----------EEQIPDGMCIDA------EGKLWVACYNGGRVI  223 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-----------GGCEEEEEEEBT------TSCEEEEEETTTEEE
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-----------CCCCCCeeEECC------CCCEEEEEcCCCEEE
Confidence            855567777899999997  4554321  11 1110           124567889988      788777777788899


Q ss_pred             EEeCCCc
Q 017194          234 VINIESE  240 (375)
Q Consensus       234 i~d~~~~  240 (375)
                      .||..++
T Consensus       224 ~~d~~tG  230 (297)
T 3g4e_A          224 RLDPVTG  230 (297)
T ss_dssp             EECTTTC
T ss_pred             EEcCCCc
Confidence            9999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=1.2e-12  Score=110.14  Aligned_cols=257  Identities=10%  Similarity=0.009  Sum_probs=164.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeC----------CCCcEEEEecccCceeeEeeec-------CccEEEEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG-------NGPVTSLCF   66 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~-------~~~v~~l~~   66 (375)
                      +++.+.++..-..+  .++++|| +++++.+.          .++.|.+||..+.+.+..+...       ......+.|
T Consensus        56 t~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~  132 (373)
T 2mad_H           56 SGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence            44455555543444  8999999 78877775          3678999999998887776532       123458999


Q ss_pred             eCCCCeEEEEcC--CCeEEEEECCCCCcccc-cccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEe
Q 017194           67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRP-LESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR  142 (375)
Q Consensus        67 ~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  142 (375)
                      +|+|++|+++..  ++.|.++| .+++.... +..    ..   ++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~----~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~  203 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS----PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL  203 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC----Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence            999999998874  47899999 87755433 322    11   23445554 45666778999999999 776653321


Q ss_pred             -----cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          143 -----AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       143 -----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                           .+.........+.+++.. ++..+..+.+.+.|+.....  +..+.....   ......+.+.....++++|   
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~---~~~~~~~~p~g~~~~~~s~---  276 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSG---GRKADTWRPGGWQQVAYLK---  276 (373)
T ss_pred             ccccccCCcceeecceeEecCCE-EEEEcCCceEEEEeccCCcceEeeeeeecCC---cccccceecCceEeEEECC---
Confidence                 011111233566777663 34334678999999975532  222221100   0000111233345577887   


Q ss_pred             ccCCCCEEEEEec----------CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          216 LDKTNKICVVAKG----------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       216 ~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                         +++.++++..          .+.|.++|+.+.+                                        .+.+
T Consensus       277 ---d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----------------------------------------vv~~  313 (373)
T 2mad_H          277 ---SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----------------------------------------TSSQ  313 (373)
T ss_pred             ---CCCEEEEEeccCCcccccCCCCeEEEEECCCCE----------------------------------------EEEE
Confidence               7887777653          3579999998753                                        2223


Q ss_pred             ecCCCccEEEEEEeecCCCCc-EEEEec-CCCeEEEEeCCCce
Q 017194          286 VGGHTAAASCVAFSMFGERGK-YLISGG-NDKLVKVWDCSRFQ  326 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~-~l~s~~-~dg~i~iwd~~~~~  326 (375)
                      +.. ......++|+   |||+ +++++. .++.|.++|..+.+
T Consensus       314 i~~-g~~p~~i~~s---~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          314 ISL-GHDVDAISVA---QDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEC-CCCcCeEEEC---CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            322 2357899999   9999 777777 58999999999984

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=3.9e-13  Score=114.78  Aligned_cols=267  Identities=9%  Similarity=-0.005  Sum_probs=163.7

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC--cEEEEeCcCce
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVKIIDIRQHC  136 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~  136 (375)
                      .....|+|+++++.+++...++.|++||..++........    ..... ++|+++++.|+++..++  .|.+++...+.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            3578999999999777777779999999986543322222    22233 89999999999888766  79999887655


Q ss_pred             eeeeE---ecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe-cCCCCCCCCCCcccCCCceeEEeecC
Q 017194          137 LYKSL---RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       137 ~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      ....+   .......+.+++++|++. .|+.+..++.|+.||..++.. ..+. ....   ...    ...+...++|+|
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~---g~~----~~~P~~~ia~~p  276 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEV-TLIKQLELS---GSL----GTNPGPYLIYYF  276 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCE-EEEEECCCC---SCC----CCSSCCEEEEET
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCE-EEEeccccc---CCC----CCCccccEEEeC
Confidence            43333   102445678999999555 355577788999999987653 2221 0000   000    001113899998


Q ss_pred             CccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCcc
Q 017194          213 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA  292 (375)
Q Consensus       213 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
                      .     ++.++++-..++.|+.|+.........-.... ..      ..+|                    ......-..
T Consensus       277 ~-----~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~-~g------~~dg--------------------~~~~~~~~~  324 (409)
T 3hrp_A          277 V-----DSNFYMSDQNLSSVYKITPDGECEWFCGSATQ-KT------VQDG--------------------LREEALFAQ  324 (409)
T ss_dssp             T-----TTEEEEEETTTTEEEEECTTCCEEEEEECTTC-CS------CBCE--------------------EGGGCBCSS
T ss_pred             C-----CCEEEEEeCCCCEEEEEecCCCEEEEEeCCCC-CC------cCCC--------------------cccccEeCC
Confidence            3     35556666677899999876431110000000 00      0000                    001111234


Q ss_pred             EEEEEEeecCCCCcEEEEec-CCCeEEEEeCCCceeeeecchhhhhh-----hhcccccceeeeeecCCCCCcEEEeeCC
Q 017194          293 ASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLI-----KNINLNKKVNWLCTTPTESENLVVCDTS  366 (375)
Q Consensus       293 v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d  366 (375)
                      ...++++   ++|+++++-. .++.|+.|++.++.............     .....-.....+++.+ ++.++++-..+
T Consensus       325 P~gia~d---~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n  400 (409)
T 3hrp_A          325 PNGMTVD---EDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWG  400 (409)
T ss_dssp             EEEEEEC---TTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTT
T ss_pred             CeEEEEe---CCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCC
Confidence            7889999   9999888888 89999999987764321100000000     0001124578899999 78888887888


Q ss_pred             CeEEEEecC
Q 017194          367 KVVKVYSIS  375 (375)
Q Consensus       367 g~v~iw~~~  375 (375)
                      ++|+.++++
T Consensus       401 ~~Ir~i~~e  409 (409)
T 3hrp_A          401 KAIRKYAVE  409 (409)
T ss_dssp             CEEEEEEEC
T ss_pred             CeEEEEEeC
Confidence            999998875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.63  E-value=1.6e-13  Score=125.58  Aligned_cols=201  Identities=16%  Similarity=0.089  Sum_probs=132.6

Q ss_pred             cCCCceeEEEEecCCCCEEEE-----eCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC-------
Q 017194           13 GHKATATCCIASRDRPGFVAS-----SGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-------   80 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s-----~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-------   80 (375)
                      +|...+..++|||| +++||.     |+.+..|++||+.+++.+.. ..+......++|+ |++.|+.++.+.       
T Consensus       126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            35567889999999 888873     33346899999999986443 1111223578999 999999888773       


Q ss_pred             ------eEEEEECCCCCcc-cccccccC-CCcceeEEEEcCCCCeEEEEeC----CCcEEEEeCcCce-eeeeEecCccc
Q 017194           81 ------EVKSFDVHMPASW-RPLESYNY-NKEEINQIVCNPKSSFLACADD----GGDVKIIDIRQHC-LYKSLRAGHSS  147 (375)
Q Consensus        81 ------~i~iwd~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~  147 (375)
                            .|++|++.++... ..+..... |...+..+.|+||+++|+....    ...|+++|+.++. ....+. .+..
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~~  281 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDLD  281 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCCC
Confidence                  4999999875432 22222222 3445778999999998865442    3589999998763 345555 5555


Q ss_pred             ceeEEEEeeCCCcEEEEeecC---CeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCE
Q 017194          148 ICSSVQFIPWKPWEVISGGLD---SKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI  222 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  222 (375)
                      ..... ++++++.+++....+   +.|..+|+.++..  ...+...             ...+.  .|++      +++.
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~--~~s~------~g~~  339 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-------------RQQVL--TVHS------GSGY  339 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-------------CSSCE--EEEE------ETTE
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-------------CCCEE--EEEE------ECCE
Confidence            55554 667777555555443   6899999987654  2344322             22333  6777      5777


Q ss_pred             EEEEec-CC--cEEEEeCCC
Q 017194          223 CVVAKG-DG--VVDVINIES  239 (375)
Q Consensus       223 l~~~~~-dg--~i~i~d~~~  239 (375)
                      |+.... ++  .|++||+.+
T Consensus       340 lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          340 LFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEEEEEETTEEEEEEECTTS
T ss_pred             EEEEEEECCeeEEEEEECCC
Confidence            766654 44  688888875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.62  E-value=2.6e-12  Score=105.18  Aligned_cols=233  Identities=9%  Similarity=0.003  Sum_probs=149.8

Q ss_pred             cCccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc
Q 017194           57 GNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH  135 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  135 (375)
                      +..-..+..|++++. .+++...++.|..||..+++. ..+.    ....+.+++++++++++++ . +..|.+||.+++
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~----~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT----MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE----CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe----CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            344556889999654 555566678999999986543 2221    2467899999999985554 3 567999999877


Q ss_pred             eeeeeEec---CcccceeEEEEeeCCCcEEEEeecC---------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCC
Q 017194          136 CLYKSLRA---GHSSICSSVQFIPWKPWEVISGGLD---------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA  203 (375)
Q Consensus       136 ~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (375)
                      +.......   .....++.++++|+|. ++++....         ..-.+|.+........+...             ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-------------~~  149 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-------------VD  149 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-------------ES
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-------------cc
Confidence            65433320   0124578999999998 55544221         22344444322222222211             24


Q ss_pred             ceeEEeecCCccccCCCCEEEE-EecCCcEEEEeCC--CcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          204 FVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIE--SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       204 ~v~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                      ..+.++|+|      +++.|++ .+.++.|.+|++.  ++...                                   ..
T Consensus       150 ~pngi~~sp------dg~~lyv~~~~~~~i~~~~~d~~~G~~~-----------------------------------~~  188 (297)
T 3g4e_A          150 ISNGLDWSL------DHKIFYYIDSLSYSVDAFDYDLQTGQIS-----------------------------------NR  188 (297)
T ss_dssp             BEEEEEECT------TSCEEEEEEGGGTEEEEEEECTTTCCEE-----------------------------------EE
T ss_pred             cccceEEcC------CCCEEEEecCCCCcEEEEeccCCCCccc-----------------------------------Cc
Confidence            568899999      7876654 4567899999874  32110                                   01


Q ss_pred             EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec-CCCCCc
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT-PTESEN  359 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~  359 (375)
                      +.+..+..+......++++   ++|++.++...++.|.+||..++         +++..+..+...+++++|. | +++.
T Consensus       189 ~~~~~~~~~~~~p~g~~~d---~~G~lwva~~~~~~v~~~d~~tG---------~~~~~i~~p~~~~t~~~f~g~-d~~~  255 (297)
T 3g4e_A          189 RSVYKLEKEEQIPDGMCID---AEGKLWVACYNGGRVIRLDPVTG---------KRLQTVKLPVDKTTSCCFGGK-NYSE  255 (297)
T ss_dssp             EEEEECCGGGCEEEEEEEB---TTSCEEEEEETTTEEEEECTTTC---------CEEEEEECSSSBEEEEEEESG-GGCE
T ss_pred             EEEEECCCCCCCCCeeEEC---CCCCEEEEEcCCCEEEEEcCCCc---------eEEEEEECCCCCceEEEEeCC-CCCE
Confidence            2223333344567889999   89988888877889999999877         4444445555779999998 5 7666


Q ss_pred             EEEee
Q 017194          360 LVVCD  364 (375)
Q Consensus       360 l~s~~  364 (375)
                      |+.++
T Consensus       256 L~vt~  260 (297)
T 3g4e_A          256 MYVTC  260 (297)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            65544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.61  E-value=1.3e-12  Score=107.32  Aligned_cols=207  Identities=8%  Similarity=-0.023  Sum_probs=135.1

Q ss_pred             CCCeeeecCCCceeEEEEecCCCC-EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      ..+..+..+........|+|+ ++ ++++...++.|..|+. +++ ...+..+...+..++++++|+.+++...++.|.+
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CceEEEecCCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence            455667666777889999999 56 7788888899999997 454 4555556778999999999986666556688999


Q ss_pred             EECCCCCcccccccccC-CCcceeEEEEcCCCCeEEE----EeC-------------CCcEEEEeCcCceeeeeEecCcc
Q 017194           85 FDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLAC----ADD-------------GGDVKIIDIRQHCLYKSLRAGHS  146 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~  146 (375)
                      |+.. ++.........+ ....+..+++.++|+++++    |..             .+.|..+|..+++......   .
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~---~  187 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD---L  187 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE---E
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec---C
Confidence            9976 432221111111 1234678999999987775    332             2568888876665433222   2


Q ss_pred             cceeEEEEeeCCCcEEEEeecC------CeEEEeeCCCCCcceEEe-cCCCCCCCCCCcccCCCceeEEeecCCccccCC
Q 017194          147 SICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVN-FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT  219 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  219 (375)
                      .....++|+|+++ .|+.+...      +.|..||+..+. +.... +..          ........+++.+      +
T Consensus       188 ~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~----------~~~~~pdgi~~d~------~  249 (305)
T 3dr2_A          188 DHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS----------VPDGLPDGFCVDR------G  249 (305)
T ss_dssp             SSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC----------CSSSCCCSEEECT------T
T ss_pred             CCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE----------CCCCCCCeEEECC------C
Confidence            3567899999998 45555444      789999987654 22111 000          0123345677777      6


Q ss_pred             CCEEEEEecCCcEEEEeCCC
Q 017194          220 NKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       220 ~~~l~~~~~dg~i~i~d~~~  239 (375)
                      |+ |.+++.+ .|.+|+...
T Consensus       250 G~-lwv~~~~-gv~~~~~~g  267 (305)
T 3dr2_A          250 GW-LWSSSGT-GVCVFDSDG  267 (305)
T ss_dssp             SC-EEECCSS-EEEEECTTS
T ss_pred             CC-EEEecCC-cEEEECCCC
Confidence            87 4444444 488998853

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=7.6e-12  Score=102.53  Aligned_cols=240  Identities=6%  Similarity=-0.038  Sum_probs=164.0

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC  136 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (375)
                      ....+.++++.++|+..++...++.|.+||.. ++. ..+. ...+...+..+++.++++++++...++.|..+|.. ++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-KEFE-VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-EEEE-CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            35678899999999877777778999999987 432 2221 12223578899999999877777667889999987 55


Q ss_pred             eeeeEe-cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          137 LYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       137 ~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      .. .+. ......+.++++.+++. ++++...++.|..||.. ++.. .+....           ....+..+++.+   
T Consensus        94 ~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~-~~~~~~-----------~~~~~~~i~~d~---  155 (300)
T 2qc5_A           94 FT-EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIY-EYDLPN-----------KGSYPAFITLGS---  155 (300)
T ss_dssp             EE-EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEE-EEECSS-----------TTCCEEEEEECT---
T ss_pred             eE-EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEE-EccCCC-----------CCCCceeEEECC---
Confidence            43 332 02346789999999887 66766668899999987 5443 332210           124678899988   


Q ss_pred             ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEE
Q 017194          216 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC  295 (375)
Q Consensus       216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  295 (375)
                         ++++.++...++.|..||.. +...                                     .  .....+...+..
T Consensus       156 ---~g~l~v~~~~~~~i~~~~~~-g~~~-------------------------------------~--~~~~~~~~~~~~  192 (300)
T 2qc5_A          156 ---DNALWFTENQNNSIGRITNT-GKLE-------------------------------------E--YPLPTNAAAPVG  192 (300)
T ss_dssp             ---TSSEEEEETTTTEEEEECTT-CCEE-------------------------------------E--EECSSTTCCEEE
T ss_pred             ---CCCEEEEecCCCeEEEECCC-CcEE-------------------------------------E--eeCCCCCCCcce
Confidence               68866666667889999883 2111                                     0  112233456788


Q ss_pred             EEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       296 ~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ++++   ++|.+.++....+.|.+|+. +++...        .........+.++++.+ +|++.++...++.|..|+.
T Consensus       193 i~~d---~~g~l~v~~~~~~~i~~~~~-~g~~~~--------~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          193 ITSG---NDGALWFVEIMGNKIGRITT-TGEISE--------YDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEC---TTSSEEEEETTTTEEEEECT-TCCEEE--------EECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred             EEEC---CCCCEEEEccCCCEEEEEcC-CCcEEE--------EECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC
Confidence            9998   89988887777888999998 332110        01123345678899988 7876666656788888864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.60  E-value=3.9e-12  Score=105.51  Aligned_cols=196  Identities=12%  Similarity=-0.027  Sum_probs=130.6

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      -..+..|+|+++.++++...++.|..||..+++. ..+. ....+.+++|+++++++++.  +..|.+||..+++.. .+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~-~~  124 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLT-LH  124 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEE-EE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE-CCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEE-EE
Confidence            3567899998566777777788999999987754 3333 35679999999999877654  345999998876532 22


Q ss_pred             cccc--CCCcceeEEEEcCCCCeEEEEeC------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           97 ESYN--YNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        97 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      ....  .....+..++++|+|+++++...      .+.|..++  +++.. .+. ........++|+|+++.++++.+.+
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~-~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLF-ADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEE-EEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-Eee-CCCcccCCeEEcCCCCEEEEEECCC
Confidence            2211  11246889999999987665432      24566666  45443 333 2334578999999998445555667


Q ss_pred             CeEEEeeCC--CC-Ccc--eEEe-cCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          169 SKLVMWDFS--KG-RPN--KIVN-FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       169 ~~i~~wd~~--~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      +.|.+||+.  ++ +..  ..+. ...           ....+..+++.+      ++.+.++...++.|..||..
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~-----------~~~~p~gi~~d~------~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTG-----------IKGGMDGSVCDA------EGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTT-----------SSSEEEEEEECT------TSCEEEEEETTTEEEEECTT
T ss_pred             CEEEEEEcccccCCcccCceEEEECCC-----------CCCCCCeeEECC------CCCEEEEEeCCCEEEEECCC
Confidence            899999986  55 321  1221 110           123467788877      68877776667889999884

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=4.3e-13  Score=111.40  Aligned_cols=258  Identities=11%  Similarity=0.050  Sum_probs=162.7

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeC----------CCCcEEEEecccCceeeEeeecC-------ccEEEEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGN-------GPVTSLCF   66 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~-------~~v~~l~~   66 (375)
                      +.+.+.++..-..+ . ++++|| +++++++.          .++.|.+||..+++.+..+....       .....++|
T Consensus        68 t~~v~~~I~vG~~P-~-va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~  144 (386)
T 3sjl_D           68 AGRVIGMIDGGFLP-N-PVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  144 (386)
T ss_dssp             TTEEEEEEEECSSC-E-EEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCeEEEEEECCCCC-c-EEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence            45556666654555 4 999999 77766654          35789999999999988876432       24567999


Q ss_pred             eCCCCeEEEEcC--CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-ceeeeeEec
Q 017194           67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRA  143 (375)
Q Consensus        67 ~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~  143 (375)
                      +|||++++++..  ++.|.++|+.+.+....+..    .+ . ...+....+.+++.+.||.+.+.++.+ ++...... 
T Consensus       145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-  217 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-  217 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-
T ss_pred             cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CC-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-
Confidence            999999888864  68999999998765555532    11 1 122333445677778888888888875 55432111 


Q ss_pred             Cc----ccce-eEEEEe-eCCCcEEEEeecCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          144 GH----SSIC-SSVQFI-PWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       144 ~~----~~~v-~~~~~~-~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      .+    ..++ ....|. ++|+  ++..+.+|+|++.|+....  ....+.....   .....-+.+.....++++|   
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~---~~~~~g~~p~g~q~~a~~~---  289 (386)
T 3sjl_D          218 EVFHPEDEFLINHPAYSQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTE---AERADGWRPGGWQQVAYHR---  289 (386)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCH---HHHHTTEEECSSSCEEEET---
T ss_pred             ceeccccccccccceeEcCCCc--EEEEeCCCEEEEEECCCCcceeecceecccc---ccccccccCCCcceeeECC---
Confidence            11    1122 124665 5664  4445668999999997654  2333321000   0000001123344577777   


Q ss_pred             ccCCCCEEEEEec----------CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          216 LDKTNKICVVAKG----------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       216 ~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                         +++.+++...          .+.|.++|+.+.+..                                        ..
T Consensus       290 ---~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~----------------------------------------~~  326 (386)
T 3sjl_D          290 ---ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL----------------------------------------AK  326 (386)
T ss_dssp             ---TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----------------------------------------EE
T ss_pred             ---CCCeEEEEeccccccccCCCCCEEEEEECCCCeEE----------------------------------------EE
Confidence               6777777653          257999999985432                                        12


Q ss_pred             ecCCCccEEEEEEeecCCCCc-EEEE-ecCCCeEEEEeCCCce
Q 017194          286 VGGHTAAASCVAFSMFGERGK-YLIS-GGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~-~l~s-~~~dg~i~iwd~~~~~  326 (375)
                      +.. ...+..++++   +|++ +|++ ...++.|.++|..+++
T Consensus       327 i~v-g~~~~~lavs---~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          327 FEM-GHEIDSINVS---QDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEE-EEEECEEEEC---SSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEC-CCCcceEEEC---CCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            211 2367899999   8986 5555 4568999999999984

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=1.2e-13  Score=115.61  Aligned_cols=280  Identities=9%  Similarity=0.006  Sum_probs=169.2

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeC--CCCcEEEEecccCceeeEe-------eecCccEEEEEEeCCCCeEEEEc
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSG--EDGCICWFDLRSKDVQLVT-------DVGNGPVTSLCFKSGNEDIIYVS   77 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~~~   77 (375)
                      .++.+.........++++|+ ++++++..  .++.++||.+.+++. ..+       ..+-..+..+++.++++++++-.
T Consensus         8 ~~~~v~~~~~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A            8 RLEVVAELSLAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN   85 (343)
T ss_dssp             CCEEEEEESSCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred             eeEEEEEcCCCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence            44555444478899999998 88888863  234356666654543 222       12446799999999987665543


Q ss_pred             C-----CCeEEEEECCCCCccccccc---ccCCCcceeEEEEcCCCCeEE-EEe---CCCcEEEEeCcCceeeeeEecCc
Q 017194           78 S-----GKEVKSFDVHMPASWRPLES---YNYNKEEINQIVCNPKSSFLA-CAD---DGGDVKIIDIRQHCLYKSLRAGH  145 (375)
Q Consensus        78 ~-----d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~-~~~---~dg~i~iwd~~~~~~~~~~~~~~  145 (375)
                      .     ++.|.+||+.+++....+..   ...+...+..+++++++..++ +..   .++.|.+||+.+++..+.+. +|
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~  164 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GY  164 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TC
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CC
Confidence            3     57999999987764333321   112234568999998655554 444   57899999998888766655 44


Q ss_pred             cccee-EEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194          146 SSICS-SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV  224 (375)
Q Consensus       146 ~~~v~-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  224 (375)
                      ..... ...+.+++. .+.+...++.++.|.                           ..+..|+++|      +++.|+
T Consensus       165 ~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~---------------------------~~~~gia~s~------dg~~ly  210 (343)
T 2qe8_A          165 PGIAPEDIDLVIDGV-PVQIGQPDGTVIRPH---------------------------LGVNGIVLDA------ENEWLY  210 (343)
T ss_dssp             TTTSCCSCCCEETTE-ECBEECTTSCEECCC---------------------------CCEEEEEECT------TSCEEE
T ss_pred             CcccccccceeECCE-EEEeccCCCceecee---------------------------cccceeEecc------CCCEEE
Confidence            22111 134555665 466666677665442                           2357799999      798888


Q ss_pred             EEecCC-cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC
Q 017194          225 VAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  303 (375)
Q Consensus       225 ~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  303 (375)
                      ++...+ .+..++....... ..              .+++.              ...+ ...++......++++   +
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~-~~--------------~~~~~--------------~~~~-~~~g~~g~pdgia~d---~  257 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNL-QL--------------TDAEL--------------GSKI-ERYSEKPICDGISID---K  257 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCT-TC--------------CHHHH--------------HTTC-EEEEECCSCSCEEEC---T
T ss_pred             EEeCCCCeEEEEEHHHhcCC-CC--------------Chhhh--------------hcce-EecccCCCCceEEEC---C
Confidence            887665 4444443210000 00              00000              0000 111222345668898   8


Q ss_pred             CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194          304 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT  365 (375)
Q Consensus       304 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  365 (375)
                      +|.++++...++.|.+||..+++..       .+.. ..+...+.++++.+ +++++++.+.
T Consensus       258 ~G~l~va~~~~~~V~~~d~~~G~~~-------~~~~-~~~~~~p~~va~~~-~g~l~v~~~~  310 (343)
T 2qe8_A          258 DHNIYVGDLAHSAIGVITSADRAYK-------LLVT-DEKLSWTDSFNFGS-DGYLYFDCNQ  310 (343)
T ss_dssp             TCCEEEEEGGGTEEEEEETTTTEEE-------EEEE-CGGGSCEEEEEECT-TSCEEEEECC
T ss_pred             CCCEEEEccCCCeEEEEECCCCCEE-------EEEE-CCceecCCeeEECC-CCcEEEEeCc
Confidence            9999999999999999998555321       1111 11245688999998 7877777653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.58  E-value=2.8e-13  Score=112.74  Aligned_cols=271  Identities=10%  Similarity=-0.085  Sum_probs=168.2

Q ss_pred             CEEEEeCCCC----cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc----------CCCeEEEEECCCCCccc
Q 017194           29 GFVASSGEDG----CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPASWR   94 (375)
Q Consensus        29 ~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~   94 (375)
                      +.+++...++    +|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||+.+.+...
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            3444444444    7889999999999999876666  799999999998886          36789999999877665


Q ss_pred             ccccccCC----CcceeEEEEcCCCCeEEEEeC--CCcEEE--EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           95 PLESYNYN----KEEINQIVCNPKSSFLACADD--GGDVKI--IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        95 ~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      .+..-...    ......++++||+++++++..  +..+.+  +|+.+   +..+. . ...   ..+.|+++..+++.+
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~-v-~~~---~~~~p~g~~~~~~~~  182 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK-S-ASC---FHIHPGAAATHYLGS  182 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE-C-SSC---CCCEEEETTEEECCC
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE-C-CCc---eEEccCCCeEEEEEc
Confidence            55421000    124568999999999998874  457888  99877   45554 1 111   234566665677778


Q ss_pred             cCCeEEEeeCCC-----CCcceE----EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          167 LDSKLVMWDFSK-----GRPNKI----VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       167 ~d~~i~~wd~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      .|+.+.+.|+.+     ++....    +..+             ..+.   + .+      ++..++..+. +.+.+.|.
T Consensus       183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg-------------~~P~---~-~~------~~~~~~~vs~-~~V~viD~  238 (368)
T 1mda_H          183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCS-------------SQAA---Q-AN------YPGMLVWAVA-SSILQGDI  238 (368)
T ss_dssp             CTTSCEEEECCSSCCCCEECCCCSCTTSCBC-------------SCCE---E-ET------TTTEEEECBS-SCCEEEEC
T ss_pred             CCCCEEEEECccccccCCeEEEEeeeeeeCC-------------CCcc---c-cc------cCCEEEEEcC-CEEEEEEC
Confidence            899998899876     332211    1111             1122   2 44      4555555555 89999998


Q ss_pred             CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC----
Q 017194          238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----  313 (375)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~----  313 (375)
                      .+..........         +..               ..  .......  ......++++   |+++.++.+..    
T Consensus       239 ~~~~~~v~~~~~---------~~~---------------~~--~~~~~~~--p~g~~~v~~s---~dg~~lyV~~~~~~~  287 (368)
T 1mda_H          239 PAAGATMKAAID---------GNE---------------SG--RKADNFR--SAGFQMVAKL---KNTDGIMILTVEHSR  287 (368)
T ss_dssp             CSSCCEEECCCC---------SSC---------------TH--HHHTTEE--ECSSSCEEEE---TTTTEEEEEEEECSS
T ss_pred             CCCcceEEEEEE---------ecc---------------cc--ccccccc--cCcceeeEEc---CCCCEEEEEeccccC
Confidence            753211000000         000               00  0000000  0111125788   89887775432    


Q ss_pred             -----CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCc-EEEee-CCCeEEEEecC
Q 017194          314 -----DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN-LVVCD-TSKVVKVYSIS  375 (375)
Q Consensus       314 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~-~dg~v~iw~~~  375 (375)
                           ++.+.++|+.+.+         .+..+... .....++++| |+++ +++.. .++.|.++|+.
T Consensus       288 ~~~~~~~~~~ViD~~t~~---------vv~~i~vg-~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          288 SCLAAAENTSSVTASVGQ---------TSGPISNG-HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CTTSCEEEEEEEESSSCC---------EEECCEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred             cccccCCCEEEEECCCCe---------EEEEEECC-CCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence                 2356699999984         33333322 3688999999 8874 55566 59999999973

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.57  E-value=2.2e-13  Score=113.63  Aligned_cols=182  Identities=10%  Similarity=0.078  Sum_probs=131.1

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---------e-eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKD---------V-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---------~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      +++.+++++. ..++++|+.++ +++|+++...         . ......+.. |+.++|  +++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            6899999999 78899998875 6779976443         1 112223566 999999  88899888 789999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      +.+.......   ..|...+.++.+.+..  ++++..||.|.+||+.++....     +...|++++|+|+|   ++.|.
T Consensus       113 v~sl~~~~~~---~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG---~~vg~  179 (388)
T 1xip_A          113 LEELSEFRTV---TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ---LAVLL  179 (388)
T ss_dssp             SSSTTCEEEE---EECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE---EEEEE
T ss_pred             chhhhccCcc---ceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc---eEEEE
Confidence            9865433323   3345678888777653  8888999999999998776542     34589999999998   57788


Q ss_pred             cCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          167 LDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      .||++++|+...++.  ..++..+ |....   ..-+...|.+|.|.+      ++.++++-.
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~P-p~~~~---~~~~~~~V~sI~wl~------~~~flv~y~  232 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLP-SELEE---LPVEEYSPLSVTILS------PQDFLAVFG  232 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCC-HHHHT---SCTTTSEEEEEEESS------SSEEEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCC-ccccc---ccCCCeeEEEEEEec------CCeEEEEEc
Confidence            999999999877664  4445211 11000   001357899999998      677777643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=3.2e-13  Score=112.67  Aligned_cols=180  Identities=9%  Similarity=-0.006  Sum_probs=129.2

Q ss_pred             cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-----------eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194          104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-----------LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      .+++.+++++...++++|+.++ +.+|+++..+           .....  .+.. |+.++|  ++. .|+++ .++.|+
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d~~-~L~v~-~~~~l~  109 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--HGD-QVLVS-TRNALY  109 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--ETT-EEEEE-ESSEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--CCC-EEEEE-cCCcEE
Confidence            4689999999999999998874 6679876433           11222  3566 999999  666 67777 889999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP  252 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  252 (375)
                      +||+++.........             +...+.++.+.+       . .+++++.||.|.+||+.++..          
T Consensus       110 v~dv~sl~~~~~~~~-------------~~~~v~~i~~~~-------p-~~av~~~dG~L~v~dl~~~~~----------  158 (388)
T 1xip_A          110 SLDLEELSEFRTVTS-------------FEKPVFQLKNVN-------N-TLVILNSVNDLSALDLRTKST----------  158 (388)
T ss_dssp             EEESSSTTCEEEEEE-------------CSSCEEEEEECS-------S-EEEEEETTSEEEEEETTTCCE----------
T ss_pred             EEEchhhhccCccce-------------eecceeeEEecC-------C-CEEEEECCCCEEEEEccCCcc----------
Confidence            999987765444432             235577776654       2 288889999999999996421          


Q ss_pred             CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee--eee
Q 017194          253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG--VQT  330 (375)
Q Consensus       253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~  330 (375)
                                                    . .   +...|++++||   |+|  ++.|..||.+++|+......  ...
T Consensus       159 ------------------------------~-~---~~~~Vs~v~WS---pkG--~~vg~~dg~i~~~~~~~~~~~~k~~  199 (388)
T 1xip_A          159 ------------------------------K-Q---LAQNVTSFDVT---NSQ--LAVLLKDRSFQSFAWRNGEMEKQFE  199 (388)
T ss_dssp             ------------------------------E-E---EEESEEEEEEC---SSE--EEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             ------------------------------c-c---ccCCceEEEEc---CCc--eEEEEcCCcEEEEcCCCccccccce
Confidence                                          1 1   34579999999   888  67788899999998887652  211


Q ss_pred             cchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194          331 SINNDLLIKNINLNKKVNWLCTTPTESENLVV  362 (375)
Q Consensus       331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  362 (375)
                      ...+..+....+|...|.++.|.+ ++.++++
T Consensus       200 I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          200 FSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             ECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             ecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            211122222235788999999999 8888877

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.55  E-value=1.4e-12  Score=119.37  Aligned_cols=240  Identities=11%  Similarity=0.041  Sum_probs=147.7

Q ss_pred             cCccEEEEEEeCCCCeEEEEcC-----CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCc-----
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSS-----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD-----  126 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----  126 (375)
                      |...+..++|||||++|+.+..     ...|++||+.+++....  .+.  ......++|+ |++.|+.++.+..     
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence            4557888999999999886432     24799999998764322  111  1124678999 9999998887743     


Q ss_pred             --------EEEEeCcCcee--eeeEec-C-cccceeEEEEeeCCCcEEEEeec---CCeEEEeeCCCCC-cceEEecCCC
Q 017194          127 --------VKIIDIRQHCL--YKSLRA-G-HSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGR-PNKIVNFGLP  190 (375)
Q Consensus       127 --------i~iwd~~~~~~--~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~-~~~~~~~~~~  190 (375)
                              |++|++.++..  ...+.. . |......+.|+|+|++++++...   +..|+++|+.++. ....+...  
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~--  279 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD--  279 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS--
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC--
Confidence                    99999876542  222220 2 34457889999999965555543   3589999998764 34444422  


Q ss_pred             CCCCCCCcccCCCceeEEeecCCccccCCCCEE-EEEecC---CcEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                                 ....... +++      ++..| +....+   +.|..+|+.++...                       
T Consensus       280 -----------~~~~~~~-~~~------~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-----------------------  318 (693)
T 3iuj_A          280 -----------LDADVSL-VDN------KGSTLYLLTNRDAPNRRLVTVDAANPGPA-----------------------  318 (693)
T ss_dssp             -----------SSSCEEE-EEE------ETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------------
T ss_pred             -----------CCceEEE-Eec------cCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------------
Confidence                       2233333 444      34444 444433   57888888764210                       


Q ss_pred             eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC-CC--eEEEEeCCCceeeeecchhhhhhhhccc
Q 017194          267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQGVQTSINNDLLIKNINL  343 (375)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  343 (375)
                                  .++   .+..|...+.  .|+   +++++|+.... ++  .|++|++.....         .......
T Consensus       319 ------------~~~---~l~~~~~~~~--~~s---~~g~~lv~~~~~~g~~~l~~~d~~g~~~---------~~l~~p~  369 (693)
T 3iuj_A          319 ------------HWR---DLIPERQQVL--TVH---SGSGYLFAEYMVDATARVEQFDYEGKRV---------REVALPG  369 (693)
T ss_dssp             ------------GCE---EEECCCSSCE--EEE---EETTEEEEEEEETTEEEEEEECTTSCEE---------EEECCSS
T ss_pred             ------------ccE---EEecCCCCEE--EEE---EECCEEEEEEEECCeeEEEEEECCCCee---------EEeecCC
Confidence                        011   2334444444  778   77777776654 43  689999886521         1111223


Q ss_pred             ccceeeeeecCCCCCcEEEeeCC----CeEEEEec
Q 017194          344 NKKVNWLCTTPTESENLVVCDTS----KVVKVYSI  374 (375)
Q Consensus       344 ~~~v~~~~~~~~~~~~l~s~~~d----g~v~iw~~  374 (375)
                      .+.+..+.+++ +++.|+....+    +.|+.||+
T Consensus       370 ~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          370 LGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             SSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECT
T ss_pred             CceEEeeecCC-CCCEEEEEecCCCCCCEEEEEEC
Confidence            45577777777 66666554443    78888876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=7.6e-12  Score=102.82  Aligned_cols=242  Identities=9%  Similarity=-0.028  Sum_probs=153.5

Q ss_pred             eeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           50 VQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        50 ~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      .+..+...........|+|+++ .+++...++.|..|+.. ++ ..   .+..+...+..++++++++++++...++.|.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence            3455555566778899999998 55666678899999974 33 22   2222356788999999998776666668899


Q ss_pred             EEeCcCceeeeeEe--cC-cccceeEEEEeeCCCcEEEE----eec-------------CCeEEEeeCCCCCcceEEecC
Q 017194          129 IIDIRQHCLYKSLR--AG-HSSICSSVQFIPWKPWEVIS----GGL-------------DSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       129 iwd~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +|+.. ++......  .+ ....+..+++.|+|. ++++    |..             .+.|..||..+++.....  .
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~  186 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D  186 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence            99986 54322111  01 113467899999998 6665    332             256888887666644332  2


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC------CcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELNISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~  262 (375)
                                   ....+.++|+|      +++.|+++...      +.|.+|++.... ..                  
T Consensus       187 -------------~~~p~gl~~sp------dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~------------------  228 (305)
T 3dr2_A          187 -------------LDHPNGLAFSP------DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LH------------------  228 (305)
T ss_dssp             -------------ESSEEEEEECT------TSSEEEEEECCC---CCCEEEEEEEETTE-EE------------------
T ss_pred             -------------CCCCcceEEcC------CCCEEEEEecCCcCCCCCEEEEEEecCCC-cc------------------
Confidence                         13567899999      79888877665      689999887531 00                  


Q ss_pred             ccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc
Q 017194          263 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN  342 (375)
Q Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  342 (375)
                                      ..+.....  .......++++   ++|++.++. .+ .|.+|+....          .+..+..
T Consensus       229 ----------------~~~~~~~~--~~~~pdgi~~d---~~G~lwv~~-~~-gv~~~~~~g~----------~~~~~~~  275 (305)
T 3dr2_A          229 ----------------DRRHFASV--PDGLPDGFCVD---RGGWLWSSS-GT-GVCVFDSDGQ----------LLGHIPT  275 (305)
T ss_dssp             ----------------EEEEEECC--SSSCCCSEEEC---TTSCEEECC-SS-EEEEECTTSC----------EEEEEEC
T ss_pred             ----------------CCeEEEEC--CCCCCCeEEEC---CCCCEEEec-CC-cEEEECCCCC----------EEEEEEC
Confidence                            00111111  12334567888   899855544 44 4999998542          2222222


Q ss_pred             cccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          343 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       343 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +. .+..++|.+ +++.|..++.++ +..+++
T Consensus       276 ~~-~~~~~~f~~-d~~~L~it~~~~-l~~~~~  304 (305)
T 3dr2_A          276 PG-TASNCTFDQ-AQQRLFITGGPC-LWMLPL  304 (305)
T ss_dssp             SS-CCCEEEECT-TSCEEEEEETTE-EEEEEC
T ss_pred             CC-ceeEEEEeC-CCCEEEEEcCCe-EEEEEC
Confidence            22 578899996 888888877764 444443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.52  E-value=5.6e-11  Score=98.51  Aligned_cols=226  Identities=9%  Similarity=0.012  Sum_probs=142.9

Q ss_pred             cEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee
Q 017194           60 PVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY  138 (375)
Q Consensus        60 ~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (375)
                      -.....|+|++. .+++...++.|..||..+++. ..+. .   ...+.+++++++++++++. .+ .|.+||..+++..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA-L---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT  122 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-C---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE-C---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE
Confidence            345778999754 555666678999999986542 2221 1   4578999999999876654 44 4999999877653


Q ss_pred             eeEecC---cccceeEEEEeeCCCcEEEEeec------CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          139 KSLRAG---HSSICSSVQFIPWKPWEVISGGL------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       139 ~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      ......   ....+.+++++|+|. ++++...      .+.|..++  +++.. .+...             ......++
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~-------------~~~~~~i~  185 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD-------------ISIPNSIC  185 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE-------------ESSEEEEE
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC-------------CcccCCeE
Confidence            322200   124688999999997 5554432      24566666  44432 22211             23467899


Q ss_pred             ecCCccccCCCCEEEEE-ecCCcEEEEeCC--Cc-ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          210 IPDADMLDKTNKICVVA-KGDGVVDVINIE--SE-LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                      |+|      +++.++++ +.++.|.+||+.  ++ ...                                   ..+.+..
T Consensus       186 ~s~------dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-----------------------------------~~~~~~~  224 (326)
T 2ghs_A          186 FSP------DGTTGYFVDTKVNRLMRVPLDARTGLPTG-----------------------------------KAEVFID  224 (326)
T ss_dssp             ECT------TSCEEEEEETTTCEEEEEEBCTTTCCBSS-----------------------------------CCEEEEE
T ss_pred             EcC------CCCEEEEEECCCCEEEEEEcccccCCccc-----------------------------------CceEEEE
Confidence            998      78776555 457899999986  32 100                                   0011122


Q ss_pred             ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec-CCCCCcEEEee
Q 017194          286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT-PTESENLVVCD  364 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~  364 (375)
                      +.........++++   ++|.+.++...++.|.+||.. +         +.+..+..+...+.+++|. + +++.|+.++
T Consensus       225 ~~~~~~~p~gi~~d---~~G~lwva~~~~~~v~~~d~~-g---------~~~~~i~~~~~~~~~~af~g~-d~~~L~vt~  290 (326)
T 2ghs_A          225 STGIKGGMDGSVCD---AEGHIWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCPAFIGP-DASRLLVTS  290 (326)
T ss_dssp             CTTSSSEEEEEEEC---TTSCEEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEEEEEEEST-TSCEEEEEE
T ss_pred             CCCCCCCCCeeEEC---CCCCEEEEEeCCCEEEEECCC-C---------CEEEEEECCCCCcEEEEEecC-CCCEEEEEe
Confidence            33334456788888   899887777667889999984 4         2233334445578999998 6 766665543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=2.4e-12  Score=108.92  Aligned_cols=259  Identities=11%  Similarity=0.062  Sum_probs=163.5

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeC----------CCCcEEEEecccCceeeEeeec-------CccEEEEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG-------NGPVTSLC   65 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~-------~~~v~~l~   65 (375)
                      ++.+.+.++..-..+  .++++|| +++|+.+.          .++.|.++|..+++.+..+...       ......+.
T Consensus       107 ~t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~  183 (426)
T 3c75_H          107 STGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA  183 (426)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred             CCCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence            345556666644555  7999999 67666664          3678999999999998887642       23456789


Q ss_pred             EeCCCCeEEEEcC--CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeee---
Q 017194           66 FKSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYK---  139 (375)
Q Consensus        66 ~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~---  139 (375)
                      |+|||++++++..  ++.|.+.|+.+.+....+..-    +.   ....|++ +.+++.+.||.+.+.+..+++...   
T Consensus       184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~----g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP----DC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----SE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC----Cc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            9999999998864  578999999987655444431    11   2233332 455666677777777775554442   


Q ss_pred             -eEecCcccc-eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc--eEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          140 -SLRAGHSSI-CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       140 -~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                       .+. ....+ ...+.+.+++. .++.....+.|.+.|+......  ..+.....   ........+.....++++|   
T Consensus       257 ~~~~-v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~---~~i~~g~~p~g~~~va~s~---  328 (426)
T 3c75_H          257 EVFH-TEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTE---AERADDWRPGGWQQTAYHR---  328 (426)
T ss_dssp             CCCS-CTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCT---TTGGGTEEECSSSCEEEEG---
T ss_pred             eeec-cCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccc---cccccccccCCceeeEEcC---
Confidence             122 11112 12456788887 4555567889999998754321  11111000   0000000112223467888   


Q ss_pred             ccCCCCEEEEEec----------CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          216 LDKTNKICVVAKG----------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       216 ~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                         +++.+++...          ++.|.++|+.+.+..                                        .+
T Consensus       329 ---dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv----------------------------------------~~  365 (426)
T 3c75_H          329 ---QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI----------------------------------------NK  365 (426)
T ss_dssp             ---GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----------------------------------------EE
T ss_pred             ---CCCEEEEEecccccccccCCCCEEEEEECCCCeEE----------------------------------------EE
Confidence               6777777643          357999999985332                                        22


Q ss_pred             ecCCCccEEEEEEeecCCCCc-EEEEec-CCCeEEEEeCCCce
Q 017194          286 VGGHTAAASCVAFSMFGERGK-YLISGG-NDKLVKVWDCSRFQ  326 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~-~l~s~~-~dg~i~iwd~~~~~  326 (375)
                      +.. ......++|+   |||+ ++++.. .++.|.++|+.+.+
T Consensus       366 I~v-g~~P~gia~s---pDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          366 IEL-GHEIDSINVS---QDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEE-EEEECEEEEC---CSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEC-CCCcCeEEEc---cCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            221 1247889999   9998 777777 59999999999984

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.50  E-value=1.1e-11  Score=103.73  Aligned_cols=208  Identities=17%  Similarity=0.173  Sum_probs=134.3

Q ss_pred             cCCCCEEEEeCCCCcEEEEecccC----ceeeEee-------ecCccEEEEEEeCCCCeEEEEcCC------CeEEEEEC
Q 017194           25 RDRPGFVASSGEDGCICWFDLRSK----DVQLVTD-------VGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDV   87 (375)
Q Consensus        25 ~~~~~~l~s~~~d~~i~iw~~~~~----~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~d------~~i~iwd~   87 (375)
                      ++...+++++..++.|.++|+.+.    +..++++       ........+...|+| .++++..+      +.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            664445667778899999998755    4455553       111245567788999 66665554      78999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-------------------CCCcEEEEeCcCceeeeeEecC-ccc
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-------------------DGGDVKIIDIRQHCLYKSLRAG-HSS  147 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~-~~~  147 (375)
                      ++.+....+..-.....--..+.|+|+++.+++..                   ....|.+||+.+++.+.++..+ ...
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            98766555543222122344688899999888874                   3688999999999888888732 223


Q ss_pred             ceeEEEE--eeCCCcEEEEee-----cCCeEEEeeCCCCCcc--eEEecCCCCCCCCCCccc-----CCCceeEEeecCC
Q 017194          148 ICSSVQF--IPWKPWEVISGG-----LDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCY-----NPAFVHAIAIPDA  213 (375)
Q Consensus       148 ~v~~~~~--~~~~~~~l~~~~-----~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~  213 (375)
                      ....+.|  +|++++.++++.     .+++|.+|....++..  +.+..........-....     .......|.++| 
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-  330 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-  330 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-
Confidence            4556666  999996556666     7789988777654321  122111100000000000     023567888988 


Q ss_pred             ccccCCCCEEEEEec-CCcEEEEeCCC
Q 017194          214 DMLDKTNKICVVAKG-DGVVDVINIES  239 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~-dg~i~i~d~~~  239 (375)
                           |+++|.++.. .+.|.+||+..
T Consensus       331 -----DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          331 -----DDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             -----TSCEEEEEETTTTEEEEEECSS
T ss_pred             -----CCCEEEEEeCCCCEEEEEEecC
Confidence                 8999988874 68999999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.50  E-value=5.9e-11  Score=100.65  Aligned_cols=261  Identities=10%  Similarity=0.047  Sum_probs=160.1

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCC--cc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK--EE  105 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~  105 (375)
                      +..++.++.++.|..+|.++++.+................  +..++.++.++.|..+|.++++............  ..
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            3567778888999999999999877666443222222222  3467888889999999998876543332210000  00


Q ss_pred             eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc----------eeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194          106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI----------CSSVQFIPWKPWEVISGGLDSKLVMWD  175 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~d~~i~~wd  175 (375)
                      .......  +..++++..++.+..+|..+++.+.... .....          +...-...+ . .++.++.++.+..+|
T Consensus       181 ~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~p~~~~-~-~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          181 ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQR-ISQATGSTEIDRLSDVDTTPVVVN-G-VVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEE-CCC-----------CCCCCCEEET-T-EEEEECTTSCEEEEE
T ss_pred             CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEe-cccCCCCcccccccccCCCcEEEC-C-EEEEEecCcEEEEEE
Confidence            0111222  3477888889999999999998877665 21100          111111113 3 577888899999999


Q ss_pred             CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCC
Q 017194          176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG  255 (375)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  255 (375)
                      .++++.+......               ....+..        ++..+++++.++.|..+|..+++.......       
T Consensus       256 ~~tG~~~w~~~~~---------------~~~~~~~--------~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~-------  305 (376)
T 3q7m_A          256 LRSGQIMWKRELG---------------SVNDFIV--------DGNRIYLVDQNDRVMALTIDGGVTLWTQSD-------  305 (376)
T ss_dssp             TTTCCEEEEECCC---------------CEEEEEE--------ETTEEEEEETTCCEEEEETTTCCEEEEECT-------
T ss_pred             CCCCcEEeeccCC---------------CCCCceE--------ECCEEEEEcCCCeEEEEECCCCcEEEeecc-------
Confidence            9999887766532               2334444        366788888899999999998643321110       


Q ss_pred             ceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhh
Q 017194          256 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND  335 (375)
Q Consensus       256 ~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  335 (375)
                                                      .....+......     +..|+.++.+|.|.++|..+++..       
T Consensus       306 --------------------------------~~~~~~~~~~~~-----~~~l~v~~~~g~l~~~d~~tG~~~-------  341 (376)
T 3q7m_A          306 --------------------------------LLHRLLTSPVLY-----NGNLVVGDSEGYLHWINVEDGRFV-------  341 (376)
T ss_dssp             --------------------------------TTTSCCCCCEEE-----TTEEEEECTTSEEEEEETTTCCEE-------
T ss_pred             --------------------------------cCCCcccCCEEE-----CCEEEEEeCCCeEEEEECCCCcEE-------
Confidence                                            011112222222     357788888999999999998533       


Q ss_pred             hhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          336 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       336 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                        .........+......  .+..|+.++.+|.|+.|+
T Consensus       342 --~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          342 --AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             --EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             --EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence              2222112222221111  234688889999999987

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=3.2e-11  Score=109.61  Aligned_cols=160  Identities=9%  Similarity=-0.021  Sum_probs=107.6

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeec-C----ccEEEEEEeCCCCeEEEEcC------CCeEEEEECCCCCccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVG-N----GPVTSLCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~----~~v~~l~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~   96 (375)
                      +..|+.++.|+.|..+|..+|+.+..+..+ .    ..+.+--...+ ..+++++.      ++.|+.+|.++++..-..
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            457888888999999999999998877654 1    12221111113 34555543      689999999988765333


Q ss_pred             ccccC-----------------------------CCcceeEEEEcCCCCeEEEEeCCC-------------------cEE
Q 017194           97 ESYNY-----------------------------NKEEINQIVCNPKSSFLACADDGG-------------------DVK  128 (375)
Q Consensus        97 ~~~~~-----------------------------~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~  128 (375)
                      .....                             .......++++|++..++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            22111                             111224578889888998887664                   499


Q ss_pred             EEeCcCceeeeeEecC-cc-------cceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          129 IIDIRQHCLYKSLRAG-HS-------SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      .+|.++++.+..++.. |.       ....-+....+|+  ..++.++.+|.++++|.++++.+..+...
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~  356 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFV  356 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccc
Confidence            9999999998877622 21       1222233344662  27899999999999999999998887754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=116.68  Aligned_cols=186  Identities=14%  Similarity=0.078  Sum_probs=105.5

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN  107 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  107 (375)
                      +..+++++.||.|..||..+|+.+..+..  ..+.+..+..++..+++++.|+.|+.||.++++.........  ...+.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~--~~~~~   84 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI--PELVQ   84 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH--HHHHT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC--ccccc
Confidence            57889999999999999999999888875  455555566677778888899999999998776533222100  01111


Q ss_pred             -EEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194          108 -QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       108 -~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  186 (375)
                       ...+. ++..+++++.++.++.||.++++.+..+. .+.    ...++|++. .+++++.|+.|+.||.++++.+..+.
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-SAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-CCC----cccccccCC-EEEEEecCCEEEEEECCCCCEEEeEe
Confidence             11111 34467788889999999999999988776 433    234566666 68889999999999999999887765


Q ss_pred             cCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ..               ......+.+..  . ....+++++.+|.|+.||..+++.
T Consensus       158 ~~---------------~~~~~~~~~~~--~-~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          158 YF---------------DYAASLPEDDV--D-YKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EE---------------EECCBCCCCCT--T-CCCCEEEEETSCEEEEECTTTCCE
T ss_pred             cc---------------cccCccccCCc--c-ccceEEEECCCCEEEEEECCCCcE
Confidence            32               11112222200  0 015677889999999999998643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.44  E-value=5.8e-11  Score=108.12  Aligned_cols=160  Identities=8%  Similarity=0.003  Sum_probs=104.4

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeec--CccEEEEEEeC---CCCeEEEEc------CCCeEEEEECCCCCccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKS---GNEDIIYVS------SGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~l~~~~---~~~~l~~~~------~d~~i~iwd~~~~~~~~~~   96 (375)
                      +..|+.++.|+.|..+|..+|+.+......  ......+..+|   ++ .+++++      .++.|+.||.++++..-..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            457888888999999999999988776542  11111111112   44 344443      2689999999998764333


Q ss_pred             cccc----------------------------CCCcceeEEEEcCCCCeEEEEeCCCc-------------------EEE
Q 017194           97 ESYN----------------------------YNKEEINQIVCNPKSSFLACADDGGD-------------------VKI  129 (375)
Q Consensus        97 ~~~~----------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~i  129 (375)
                      ....                            .+......++++|+...++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            2211                            00111235788898889999887763                   999


Q ss_pred             EeCcCceeeeeEecC-cc-------cceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          130 IDIRQHCLYKSLRAG-HS-------SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       130 wd~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +|.++++.+-.++.. |.       .++.-.....+|+  ..++.++.+|.++++|.++|+.+....+.
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~  348 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIV  348 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccc
Confidence            999999998887621 21       1112222223442  25888999999999999999998766543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.43  E-value=2.9e-11  Score=109.82  Aligned_cols=203  Identities=11%  Similarity=0.001  Sum_probs=128.5

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCcc-----------EEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-----------VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE   97 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   97 (375)
                      ..|+.++.++.|.-+|..+|+.+..+......           ...+++  .+..+++++.|+.|..+|.++++..-...
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            45666777889999999999988776543210           112333  35678888889999999999987654443


Q ss_pred             cc-cC-CCcceeE-EEEcCCCCeEEEEeC------CCcEEEEeCcCceeeeeEecCcccc--------------------
Q 017194           98 SY-NY-NKEEINQ-IVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSI--------------------  148 (375)
Q Consensus        98 ~~-~~-~~~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~--------------------  148 (375)
                      .. .. ....+.. ...  .+..+++++.      ++.|+.+|.++++.+..+. .....                    
T Consensus       156 ~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~-~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF-SVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             TTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE-SSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             CCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec-cCCCCcccccccccccccccccccc
Confidence            22 10 0011211 111  2345555543      6899999999999987776 22111                    


Q ss_pred             ------------eeEEEEeeCCCcEEEEeecCC-------------------eEEEeeCCCCCcceEEecCCCCCCCCCC
Q 017194          149 ------------CSSVQFIPWKPWEVISGGLDS-------------------KLVMWDFSKGRPNKIVNFGLPENNGNAG  197 (375)
Q Consensus       149 ------------v~~~~~~~~~~~~l~~~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~  197 (375)
                                  ...++++|++. +++.+..++                   .|..+|.++++.+..++....+.-. . 
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd-~-  309 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD-Y-  309 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC-C-
T ss_pred             CceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc-c-
Confidence                        13578888887 677766553                   5999999999999888754111000 0 


Q ss_pred             cccCCCceeEEeecCCccccCCC---CEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      .  .......+....      +|   ..++.++.+|.++++|..+++.+....
T Consensus       310 ~--~~~~p~l~~~~~------dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          310 T--STQPMILADIKI------AGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             C--CCSCCEEEEEEE------TTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             c--cCCCcEEEeccc------CCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            0  001111222222      46   689999999999999999988766543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.42  E-value=1.3e-11  Score=102.76  Aligned_cols=298  Identities=9%  Similarity=-0.043  Sum_probs=175.7

Q ss_pred             eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194           19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      .+.....+ + .|..++.++.|..|| .+++.......+...+.++...+++. +..++.+  |..+|. +++...... 
T Consensus        23 ~~~~~d~~-g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~-   94 (330)
T 3hxj_A           23 SSPILAKN-G-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD-   94 (330)
T ss_dssp             CCCEECTT-S-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC-
T ss_pred             cCceEccC-C-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE-
Confidence            34444444 3 566777788899999 88887666555555567777777765 5555544  888885 443322222 


Q ss_pred             ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194           99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                        ..........+.  +..+.+++.++.+..+|.. ++....+. .....+.++...+++.  +..++.++.|..+|.. 
T Consensus        95 --~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-  165 (330)
T 3hxj_A           95 --TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-  165 (330)
T ss_dssp             --C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-
T ss_pred             --CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-
Confidence              112223333333  4578888888999999988 77766666 4555567777777774  7778888999999988 


Q ss_pred             CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS  258 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  258 (375)
                      ++....+...             ...+.++.+.+      ++. +.+++  +.|..+| .++........ ......++.
T Consensus       166 g~~~~~~~~~-------------~~~~~~~~~d~------~g~-l~v~t--~~l~~~d-~~g~~~~~~~~-~~~~~~~~~  221 (330)
T 3hxj_A          166 GTEKWRFKTN-------------DAITSAASIGK------DGT-IYFGS--DKVYAIN-PDGTEKWNFYA-GYWTVTRPA  221 (330)
T ss_dssp             SCEEEEEECS-------------SCCCSCCEECT------TCC-EEEES--SSEEEEC-TTSCEEEEECC-SSCCCSCCE
T ss_pred             CCEeEEEecC-------------CCceeeeEEcC------CCE-EEEEe--CEEEEEC-CCCcEEEEEcc-CCcceeceE
Confidence            7777666543             23455555654      455 44555  7899999 55554443332 224456667


Q ss_pred             ecccccceeee--eeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhh
Q 017194          259 TSKVNIRDAEM--EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL  336 (375)
Q Consensus       259 ~s~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  336 (375)
                      ..++|...+..  +.....+. ....+..+......+..+.+.   +++ .|..++.+|.|..+|. +++..        
T Consensus       222 ~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~---~~g-~l~v~t~~ggl~~~d~-~g~~~--------  287 (330)
T 3hxj_A          222 ISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIG---NTD-TIYFGSYDGHLYAINP-DGTEK--------  287 (330)
T ss_dssp             ECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEEC---TTS-CEEEECTTCEEEEECT-TSCEE--------
T ss_pred             ECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEc---CCC-eEEEecCCCCEEEECC-CCcEE--------
Confidence            77776654431  11111111 111122222222223334444   455 5666777888999996 44321        


Q ss_pred             hhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          337 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       337 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                       .........+.++...+ ++ .|..++.+|.+++...
T Consensus       288 -~~~~~~~~~~~~~~~d~-~g-~l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          288 -WNFETGSWIIATPVIDE-NG-TIYFGTRNGKFYALFN  322 (330)
T ss_dssp             -EEEECSSCCCSCCEECT-TC-CEEEECTTSCEEEEEC
T ss_pred             -EEEEcCCccccceEEcC-CC-EEEEEcCCCeEEEEec
Confidence             11222234455666655 55 4777889999988653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.41  E-value=1.1e-09  Score=92.80  Aligned_cols=269  Identities=9%  Similarity=0.046  Sum_probs=159.7

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeec---------CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVG---------NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---------~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      +..++.++.++.|..+|.++++.+......         ...+.+.- ..++..++.++.++.|..+|.++++..-....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            356777888899999999999987666542         12232222 22355788888899999999998865433322


Q ss_pred             ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce-----eEEEEeeCCCcEEEEeecCCeEEE
Q 017194           99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----SSVQFIPWKPWEVISGGLDSKLVM  173 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i~~  173 (375)
                      .   .........  .+..+++++.++.|..+|.++++.+..+. ......     ...... + . .++.++.++.+..
T Consensus       132 ~---~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~-~-~-~v~~g~~~g~l~~  202 (376)
T 3q7m_A          132 A---GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVN-LDMPSLSLRGESAPTTA-F-G-AAVVGGDNGRVSA  202 (376)
T ss_dssp             S---SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC-----CCCCCCEEE-T-T-EEEECCTTTEEEE
T ss_pred             C---CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEe-CCCCceeecCCCCcEEE-C-C-EEEEEcCCCEEEE
Confidence            1   111111122  24478888899999999999999887776 322111     122222 3 3 6888888999999


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL  253 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  253 (375)
                      +|..+++.+.......+......      ..+..+...|.    -.+..+++++.++.+..+|..+++....        
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~------~~~~~~~~~p~----~~~~~v~~~~~~g~l~~~d~~tG~~~w~--------  264 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEI------DRLSDVDTTPV----VVNGVVFALAYNGNLTALDLRSGQIMWK--------  264 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------------CCCCCCE----EETTEEEEECTTSCEEEEETTTCCEEEE--------
T ss_pred             EECCCCcEEEEEecccCCCCccc------ccccccCCCcE----EECCEEEEEecCcEEEEEECCCCcEEee--------
Confidence            99999998887764421100000      00000111110    0256778888899999999987643211        


Q ss_pred             CCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecch
Q 017194          254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN  333 (375)
Q Consensus       254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  333 (375)
                                                      ..  ......+..     ++..+..++.++.|..+|..+++...... 
T Consensus       265 --------------------------------~~--~~~~~~~~~-----~~~~l~~~~~~g~l~~~d~~tG~~~w~~~-  304 (376)
T 3q7m_A          265 --------------------------------RE--LGSVNDFIV-----DGNRIYLVDQNDRVMALTIDGGVTLWTQS-  304 (376)
T ss_dssp             --------------------------------EC--CCCEEEEEE-----ETTEEEEEETTCCEEEEETTTCCEEEEEC-
T ss_pred             --------------------------------cc--CCCCCCceE-----ECCEEEEEcCCCeEEEEECCCCcEEEeec-
Confidence                                            11  112233333     34567777788999999999985432111 


Q ss_pred             hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          334 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                             ......+.....   .+..|+.++.+|.|.++|.
T Consensus       305 -------~~~~~~~~~~~~---~~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          305 -------DLLHRLLTSPVL---YNGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             -------TTTTSCCCCCEE---ETTEEEEECTTSEEEEEET
T ss_pred             -------ccCCCcccCCEE---ECCEEEEEeCCCeEEEEEC
Confidence                   001111222222   2346888888888888875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=4e-11  Score=100.21  Aligned_cols=238  Identities=9%  Similarity=0.051  Sum_probs=144.7

Q ss_pred             ccEEEEEEeCCCCeEEEEcC--CCeEEEEECCCCCcccccc----cccCCCcceeEEEEcCCCCeEEEEeC-----CCcE
Q 017194           59 GPVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASWRPLE----SYNYNKEEINQIVCNPKSSFLACADD-----GGDV  127 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i  127 (375)
                      ..+..++++++|+.+++...  ++.++||.+.+++ ...+.    ....+-..+..++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            67899999999998887642  3435566554332 22221    11224467899999999876665433     5789


Q ss_pred             EEEeCcCceeeeeEec-----CcccceeEEEEeeCCCcEEEEee---cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcc
Q 017194          128 KIIDIRQHCLYKSLRA-----GHSSICSSVQFIPWKPWEVISGG---LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQC  199 (375)
Q Consensus       128 ~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  199 (375)
                      .+||+.+++.+..+..     .+...+..+++++++...+++-.   .++.|.+||+.+++....+..+ +.        
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~-~~--------  166 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY-PG--------  166 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC-TT--------
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC-Cc--------
Confidence            9999999987776651     11235689999987653556655   6789999999887754443210 00        


Q ss_pred             cCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcce
Q 017194          200 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR  279 (375)
Q Consensus       200 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~  279 (375)
                      ..+..   ..+.+      ++..+.+.+.+|.++.|.                                           
T Consensus       167 ~~~~~---~~~~~------~g~~~~~~~~~g~~~~~~-------------------------------------------  194 (343)
T 2qe8_A          167 IAPED---IDLVI------DGVPVQIGQPDGTVIRPH-------------------------------------------  194 (343)
T ss_dssp             TSCCS---CCCEE------TTEECBEECTTSCEECCC-------------------------------------------
T ss_pred             ccccc---cceeE------CCEEEEeccCCCceecee-------------------------------------------
Confidence            00001   22333      455555555555543321                                           


Q ss_pred             eEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC-eEEEEeCCCceeeeecchhhhhhh--hcccccceeeeeecCCC
Q 017194          280 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIK--NINLNKKVNWLCTTPTE  356 (375)
Q Consensus       280 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~  356 (375)
                                 ..+..++++   |+|+.|+.+..++ .|..++....... .....+....  ..++.+....+++.+ +
T Consensus       195 -----------~~~~gia~s---~dg~~ly~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~pdgia~d~-~  258 (343)
T 2qe8_A          195 -----------LGVNGIVLD---AENEWLYLSPMHSTSMYRIKSADLSNL-QLTDAELGSKIERYSEKPICDGISIDK-D  258 (343)
T ss_dssp             -----------CCEEEEEEC---TTSCEEEEEESSCSEEEEEEHHHHTCT-TCCHHHHHTTCEEEEECCSCSCEEECT-T
T ss_pred             -----------cccceeEec---cCCCEEEEEeCCCCeEEEEEHHHhcCC-CCChhhhhcceEecccCCCCceEEECC-C
Confidence                       235779999   9998888776655 4544443210000 0000011111  123445667899998 8


Q ss_pred             CCcEEEeeCCCeEEEEec
Q 017194          357 SENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       357 ~~~l~s~~~dg~v~iw~~  374 (375)
                      |.++++...++.|.+|+.
T Consensus       259 G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          259 HNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CCEEEEEGGGTEEEEEET
T ss_pred             CCEEEEccCCCeEEEEEC
Confidence            988888888999999985

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.38  E-value=7.3e-10  Score=92.84  Aligned_cols=246  Identities=9%  Similarity=0.066  Sum_probs=146.9

Q ss_pred             CCCCeEEEE-cCCCeEEEEECCCC-Cccccccccc-------CCCcceeEEEEcCCCCeEEEEeCC------CcEEEEeC
Q 017194           68 SGNEDIIYV-SSGKEVKSFDVHMP-ASWRPLESYN-------YNKEEINQIVCNPKSSFLACADDG------GDVKIIDI  132 (375)
Q Consensus        68 ~~~~~l~~~-~~d~~i~iwd~~~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~  132 (375)
                      +++++|+.. ..++.|.++|+.+. +..+..+..+       .....-..+.++|++ .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            777777664 45689999999754 2222323221       011244567889999 66665554      78999999


Q ss_pred             cCceeeeeEecC-c-ccceeEEEEeeCCCcEEEEee-------------------cCCeEEEeeCCCCCcceEEecCCCC
Q 017194          133 RQHCLYKSLRAG-H-SSICSSVQFIPWKPWEVISGG-------------------LDSKLVMWDFSKGRPNKIVNFGLPE  191 (375)
Q Consensus       133 ~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~l~~~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~  191 (375)
                      ++++.+.++..+ . ...-..+.|+|+++ .+++..                   .+.+|.+||+.+++.+.++..+.  
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~--  248 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE--  248 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT--
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC--
Confidence            999999888621 1 12234688899998 677764                   36899999999988888887641  


Q ss_pred             CCCCCCcccCCCceeEEee--cCCccccCCCCEEEEEec------CCcEEEEeCCCcceeecccccCCCCCCceeecccc
Q 017194          192 NNGNAGQCYNPAFVHAIAI--PDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN  263 (375)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g  263 (375)
                               .......+.|  +|      +++++++++.      +++|.+|....+.......                
T Consensus       249 ---------~g~~P~~i~f~~~P------dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v----------------  297 (462)
T 2ece_A          249 ---------ENRMALELRPLHDP------TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV----------------  297 (462)
T ss_dssp             ---------TEEEEEEEEECSST------TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE----------------
T ss_pred             ---------CCCccceeEeeECC------CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE----------------
Confidence                     0123345544  77      7998888875      5688777664321100000                


Q ss_pred             cceeeeeeeecCCcceeEeeeee-------cCCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCce---eeeecc
Q 017194          264 IRDAEMEILDQSGGKRLHLDYSV-------GGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQ---GVQTSI  332 (375)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~---~~~~~~  332 (375)
                              .+.   ...+....+       .+-......+.+|   +||++|.++.. .+.|.+||+....   ......
T Consensus       298 --------Idi---~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~  363 (462)
T 2ece_A          298 --------IEI---PAEPLEGNLPEILKPFKAVPPLVTDIDIS---LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK  363 (462)
T ss_dssp             --------EEE---CCEECCSSCCGGGGGGTEECCCCCCEEEC---TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             --------EeC---CCccccccccccccccccCCCceeEEEEC---CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence                    000   000000000       0002346778899   99998887755 7899999986431   111100


Q ss_pred             hhhhhhhhccc------ccceeeeeecCCCCCcEEEee
Q 017194          333 NNDLLIKNINL------NKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       333 ~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      .+-.+ ....|      .+....++++| ||++|+++.
T Consensus       364 tGG~~-~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN  399 (462)
T 2ece_A          364 LGGIF-HRADHPAGHKLTGAPQMLEISR-DGRRVYVTN  399 (462)
T ss_dssp             CBTTT-TCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred             eCCee-ccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence            00000 00001      12357889999 999988887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=1.5e-11  Score=102.34  Aligned_cols=251  Identities=7%  Similarity=-0.008  Sum_probs=154.5

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeC----------CCCcEEEEecccCceeeEeeecC-------ccEEEEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGN-------GPVTSLC   65 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~-------~~v~~l~   65 (375)
                      ++++.+.++..-..+  .+.++|| +++++++.          .+++|.+||+.+++.+.++..+.       .....++
T Consensus        54 ~t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia  130 (368)
T 1mda_H           54 GCGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             CCCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence            456667777655566  7999999 66666664          36889999999999999987541       3456899


Q ss_pred             EeCCCCeEEEEcC--CCeEEE--EECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcC-----c
Q 017194           66 FKSGNEDIIYVSS--GKEVKS--FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQ-----H  135 (375)
Q Consensus        66 ~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-----~  135 (375)
                      ++|||++++++..  +..+.+  +|..+   ...+..    .+.   ..+.|++ ..+++.+.|+.+.+.|+++     +
T Consensus       131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v----~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~  200 (368)
T 1mda_H          131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS----ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC----SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC----CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence            9999999998865  467888  88875   222221    111   1123444 3445556788888888876     4


Q ss_pred             eeee----eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194          136 CLYK----SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       136 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      +...    .+. -...+.   . .+++. .++..+. +.+.+.|+.....  +..+.+....   .......+.....++
T Consensus       201 ~v~~~~t~~i~-vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~---~~~~~~~p~g~~~v~  270 (368)
T 1mda_H          201 IVGAQCTGAQN-CSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESG---RKADNFRSAGFQMVA  270 (368)
T ss_dssp             ECCCCSCTTSC-BCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTH---HHHTTEEECSSSCEE
T ss_pred             eEEEEeeeeee-CCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEecccc---ccccccccCcceeeE
Confidence            4331    122 112232   3 66666 4555555 8999999865332  2222111000   000000111222367


Q ss_pred             ecCCccccCCCCEEEEEec---------CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          210 IPDADMLDKTNKICVVAKG---------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                      ++|      +++.++++..         ++.+.++|+.+.+..                                     
T Consensus       271 ~s~------dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv-------------------------------------  307 (368)
T 1mda_H          271 KLK------NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-------------------------------------  307 (368)
T ss_dssp             EET------TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-------------------------------------
T ss_pred             EcC------CCCEEEEEeccccCcccccCCCEEEEECCCCeEE-------------------------------------
Confidence            888      7888877643         235679999985332                                     


Q ss_pred             EeeeeecCCCccEEEEEEeecCCCCc-EEEEec-CCCeEEEEeCCCce
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGERGK-YLISGG-NDKLVKVWDCSRFQ  326 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~~~~-~l~s~~-~dg~i~iwd~~~~~  326 (375)
                         ..+... .....++|+   |||+ ++++.. .++.|.++|+.+.+
T Consensus       308 ---~~i~vg-~~p~gi~~s---~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          308 ---GPISNG-HDSDAIIAA---QDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ---ECCEEE-EEECEEEEC---CSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             ---EEEECC-CCcceEEEC---CCCCEEEEEccCCCCeEEEEECCCCc
Confidence               222211 257889999   8997 456666 58999999999984

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.35  E-value=6.4e-09  Score=83.53  Aligned_cols=223  Identities=8%  Similarity=0.010  Sum_probs=138.2

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~   94 (375)
                      ..+..++++++++.++++-..++.|..++.........+.........+++.+++..|+.+ ...+.|.++++.... ..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence            3467899999745666666677899999987655433333223567899999976555544 456799999987432 12


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeC---CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                      .+..  ........++++|++..|+.+..   .+.|..+++... ....+..........++++|+++.++++-...+.|
T Consensus       115 ~~~~--~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          115 VLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (267)
T ss_dssp             EEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEE--CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence            2211  11245688999997666666554   368888887543 33333212234678999999877566666677899


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      ..+|+........+. .             ......+++.       ++.++++....+.|..+|..+++..........
T Consensus       192 ~~~~~~g~~~~~~~~-~-------------~~~P~gi~~d-------~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~  250 (267)
T 1npe_A          192 ECLNPAQPGRRKVLE-G-------------LQYPFAVTSY-------GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (267)
T ss_dssp             EEEETTEEEEEEEEE-C-------------CCSEEEEEEE-------TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEecCCCceEEEec-C-------------CCCceEEEEe-------CCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence            999987543322222 1             1233556653       244444444668999999988765554433222


Q ss_pred             CCCCceeecccc
Q 017194          252 PLKGSQSTSKVN  263 (375)
Q Consensus       252 ~~~~~~~~s~~g  263 (375)
                      .....+++.|++
T Consensus       251 ~~p~gi~~~~~~  262 (267)
T 1npe_A          251 TRLYGITIALSQ  262 (267)
T ss_dssp             CCCCCEEEECSC
T ss_pred             cccceeeecCcc
Confidence            234445555544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.34  E-value=3.3e-10  Score=103.18  Aligned_cols=211  Identities=10%  Similarity=0.040  Sum_probs=143.3

Q ss_pred             CCcEEEEecccCceeeEeeecC-------------------------------ccEEEEEEeCCCCeEEEEcCCC-----
Q 017194           37 DGCICWFDLRSKDVQLVTDVGN-------------------------------GPVTSLCFKSGNEDIIYVSSGK-----   80 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~~~~~~-------------------------------~~v~~l~~~~~~~~l~~~~~d~-----   80 (375)
                      +|.|..||..+|+.+..+....                               ..-..+++.|++..++.+..++     
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            6899999999999877664210                               0112578888888888888775     


Q ss_pred             --------------eEEEEECCCCCcccccccccC------CCcceeEEEEcCCCC---eEEEEeCCCcEEEEeCcCcee
Q 017194           81 --------------EVKSFDVHMPASWRPLESYNY------NKEEINQIVCNPKSS---FLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        81 --------------~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~  137 (375)
                                    .|..+|.++++..-..+....      ...+........+++   .++.++.+|.++++|.++++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                          399999999876544432110      011222222223554   788899999999999999988


Q ss_pred             eeeEecCccc--------------------------------------ceeEEEEeeCCCcEEEEeec------------
Q 017194          138 YKSLRAGHSS--------------------------------------ICSSVQFIPWKPWEVISGGL------------  167 (375)
Q Consensus       138 ~~~~~~~~~~--------------------------------------~v~~~~~~~~~~~~l~~~~~------------  167 (375)
                      +.........                                      .-..++|+|+.. ++++...            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEEEeccccceeeeecccc
Confidence            7543311100                                      011368888877 5555421            


Q ss_pred             ---------------------------------CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc
Q 017194          168 ---------------------------------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD  214 (375)
Q Consensus       168 ---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (375)
                                                       +|.|+.||+.+++.+..+..+              .....-.+..  
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--------------~~~~~g~~~t--  484 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--------------TIFNGGTLST--  484 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--------------SSCCCCEEEE--
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--------------CCccCccceE--
Confidence                                             378999999999998888754              2222223333  


Q ss_pred             cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee
Q 017194          215 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  268 (375)
Q Consensus       215 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  268 (375)
                          .+.+++.++.||.|+.||.++++.+.............+.++.+|++.+.
T Consensus       485 ----agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          485 ----AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             ----TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ----CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence                57899999999999999999999988777665555566778889886654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.32  E-value=4.1e-10  Score=97.70  Aligned_cols=277  Identities=14%  Similarity=0.049  Sum_probs=172.3

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeee---------------------------------c------CccEEEEEEeC---
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDV---------------------------------G------NGPVTSLCFKS---   68 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~---------------------------------~------~~~v~~l~~~~---   68 (375)
                      +.||+..|.++|+-+.+++.++.+..                                 +      .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            77889999999999888776554421                                 0      01122244443   


Q ss_pred             --CCCeEEEEcC-CCeEEEEECCCCCcccccccccCCCcceeEEEE-c-CCCCeEEEEe------------------CCC
Q 017194           69 --GNEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-N-PKSSFLACAD------------------DGG  125 (375)
Q Consensus        69 --~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg  125 (375)
                        ||++++.... ++.|.+.|+.+.+..+.+. +.. ......+++ + |+++++++++                  .++
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~-ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILE-IPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEE-CSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEe-CCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence              7887776655 4689999999876655442 221 245778887 5 8999998885                  245


Q ss_pred             cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC-------------------------------------
Q 017194          126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-------------------------------------  168 (375)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------------------------------  168 (375)
                      .+.+.|.++.+...++..  .+....++++|+|++.++++...                                     
T Consensus       176 ~vtvID~~t~~v~~qI~V--gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEECCCCeEEEEEEe--CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            799999999998888872  22567788999999544444332                                     


Q ss_pred             CeEEEeeCCC--CCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceee
Q 017194          169 SKLVMWDFSK--GRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNIS  244 (375)
Q Consensus       169 ~~i~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  244 (375)
                      +.|.+.|.++  ++. +..+..+              ....++.++|      ||+++++++ .+..|.++|+.+.+...
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg--------------~~PhGv~~sP------DGk~v~V~~~~s~~VsVid~~~~~~~~  313 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA--------------NNPHGCNMAP------DKKHLCVAGKLSPTVTVLDVTRFDAVF  313 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE--------------SSCCCEEECT------TSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred             CcEEEEeCcccCCceeEEEEecC--------------CCceEEEEcC------CCCEEEEeCCCCCeEEEEECccccccc
Confidence            1356666665  333 3444433              4567889998      899887776 67899999999643211


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      .-.           +.+.                 .....++.. ......++|+   ++|...++..-|+.|.+||+..
T Consensus       314 ~~~-----------l~~~-----------------~~v~~~v~v-G~gP~h~aF~---~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          314 YEN-----------ADPR-----------------SAVVAEPEL-GLGPLHTAFD---GRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             HSC-----------CCGG-----------------GGEEECCBC-CSCEEEEEEC---TTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccc-----------cCcc-----------------cceEEEcCC-CCCcceEEEC---CCCeEEEEEecCCcEEEEEhhH
Confidence            000           0000                 011112221 3457889999   9995556677899999999887


Q ss_pred             ceeee-ecchhhhhhhhcc-----cccceeeeeecCCCCCcEEEee
Q 017194          325 FQGVQ-TSINNDLLIKNIN-----LNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       325 ~~~~~-~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      ..... -....+.+..+.-     |...-.++..+| ||++|+++.
T Consensus       362 a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N  406 (595)
T 1fwx_A          362 AIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS  406 (595)
T ss_dssp             HHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred             hhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence            31000 0000022223322     322233445677 999999875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=110.26  Aligned_cols=180  Identities=12%  Similarity=0.111  Sum_probs=100.9

Q ss_pred             CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCC
Q 017194          114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN  193 (375)
Q Consensus       114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  193 (375)
                      ++..+++++.||.|+.||..+++.+..+. .  ..+.+..+..++. ++++++.|+.|+.||..+++.+..+....    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~----   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTI----   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCH----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccC----
Confidence            56789999999999999999999998888 4  4555555666776 67888899999999999998877664320    


Q ss_pred             CCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeee
Q 017194          194 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD  273 (375)
Q Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~  273 (375)
                              +..+   ..+|..   ..+..+++++.++.|+.||..+++...                             
T Consensus        80 --------~~~~---~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w-----------------------------  116 (369)
T 2hz6_A           80 --------PELV---QASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQ-----------------------------  116 (369)
T ss_dssp             --------HHHH---TTCSCC--------CCCCEEEEEEEEECCC-----------------------------------
T ss_pred             --------cccc---ccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEE-----------------------------
Confidence                    0111   111100   024567788889999999999864332                             


Q ss_pred             cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec
Q 017194          274 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT  353 (375)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  353 (375)
                                 .+..+.    ...++   |++..+++++.|+.|+.||..+++..         -....+  .....++.
T Consensus       117 -----------~~~~~~----~~~~~---p~~~~v~~~~~dg~v~a~d~~tG~~~---------W~~~~~--~~~~~~~~  167 (369)
T 2hz6_A          117 -----------TLSSAF----ADSLS---PSTSLLYLGRTEYTITMYDTKTRELR---------WNATYF--DYAASLPE  167 (369)
T ss_dssp             ----------------------------------EEEEEEEEEEECCCSSSSSCC---------CEEEEE--EECCBCCC
T ss_pred             -----------EecCCC----ccccc---ccCCEEEEEecCCEEEEEECCCCCEE---------EeEecc--cccCcccc
Confidence                       222221    12345   67788999999999999999998432         111111  11222232


Q ss_pred             CCCC---CcEEEeeCCCeEEEEec
Q 017194          354 PTES---ENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       354 ~~~~---~~l~s~~~dg~v~iw~~  374 (375)
                      . +.   ..+++++.||.|+.||.
T Consensus       168 ~-~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          168 D-DVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             C-CTTCCCCEEEEETSCEEEEECT
T ss_pred             C-CccccceEEEECCCCEEEEEEC
Confidence            2 21   46778888999999885

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.28  E-value=9.5e-11  Score=101.60  Aligned_cols=187  Identities=12%  Similarity=0.069  Sum_probs=133.5

Q ss_pred             CCCCEEE-EeCCCCcEEEEecccCceeeEeeec-CccEEEEEE-e-CCCCeEEEEc------------------CCCeEE
Q 017194           26 DRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCF-K-SGNEDIIYVS------------------SGKEVK   83 (375)
Q Consensus        26 ~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~-~-~~~~~l~~~~------------------~d~~i~   83 (375)
                      | |+++. +...+..|.+.|+.+.+..+.+... ...+..+++ + |+++++++++                  .++.+.
T Consensus       100 D-G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 D-GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             E-EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             C-CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            6 55554 4455678999999999988855432 356788888 5 9999998884                  235899


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC--------------------------------------
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--------------------------------------  125 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------  125 (375)
                      +.|.++.+....+..    .+....++++|+++++++.+.+.                                      
T Consensus       179 vID~~t~~v~~qI~V----gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          179 AVDADKWEVAWQVLV----SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEETTTTEEEEEEEE----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEECCCCeEEEEEEe----CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            999987654444433    12446678999999988887543                                      


Q ss_pred             cEEEEeCcC--cee-eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC------------cceEEecCCC
Q 017194          126 DVKIIDIRQ--HCL-YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR------------PNKIVNFGLP  190 (375)
Q Consensus       126 ~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------------~~~~~~~~~~  190 (375)
                      .|.+.|.++  ++. +..+.  -.....++.++|||+++++++..+.+|.++|+.+.+            ....+..+  
T Consensus       255 ~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG--  330 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG--  330 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC--
T ss_pred             cEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC--
Confidence            467777776  444 44554  234567899999999777778889999999998653            22233322  


Q ss_pred             CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                                  .....++|+|      +|...++...|++|.+||+.+
T Consensus       331 ------------~gP~h~aF~~------dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          331 ------------LGPLHTAFDG------RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ------------SCEEEEEECT------TSEEEEEETTTTEEEEEEHHH
T ss_pred             ------------CCcceEEECC------CCeEEEEEecCCcEEEEEhhH
Confidence                        5678999999      785555666899999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.27  E-value=3.5e-09  Score=83.41  Aligned_cols=216  Identities=12%  Similarity=0.013  Sum_probs=141.6

Q ss_pred             CCeeeecCCC--ceeEEEEecCCCCEEEEeCC--CCcEEEEecccCceeeEeeecCc-cEEEEEEeCCCCeEEEE-cCCC
Q 017194            7 KPRRLRGHKA--TATCCIASRDRPGFVASSGE--DGCICWFDLRSKDVQLVTDVGNG-PVTSLCFKSGNEDIIYV-SSGK   80 (375)
Q Consensus         7 ~~~~l~~h~~--~i~~~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~-~~d~   80 (375)
                      .+.++. |..  ....++|+|+ +.++++.+.  ++.|.++|+.+++.+..+..... ....+++.  ++.|..+ -.++
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             EEEEEE-CCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            344553 543  3578999998 666666553  57999999999999888764222 22345554  4455444 4578


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc----cceeEEEEee
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS----SICSSVQFIP  156 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~  156 (375)
                      .+.++|..+.+....+..-   ..  ....+++|++.++++..++.|.++|..+.+.+..+..+..    ..++.+.|. 
T Consensus        87 ~v~viD~~t~~v~~~i~~g---~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQ---MK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             EEEEEETTTTEEEEEEECC---SS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             EEEEEECCCCcEEEEEECC---CC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            9999999976554444321   01  1233556888888877889999999999888887762211    136788888 


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEecCCcEEEE
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVI  235 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~  235 (375)
                      ++. +++....++.|.+.|..+++.+..+....................+.|+++|      +++ +++++...+.+.+.
T Consensus       161 dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~------~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          161 NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ------ENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET------TTTEEEEEETTCSEEEEE
T ss_pred             CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC------CCCEEEEECCCCCeEEEE
Confidence            664 5666667889999999999999998753000000000000113568999999      555 55555577889888


Q ss_pred             eCCC
Q 017194          236 NIES  239 (375)
Q Consensus       236 d~~~  239 (375)
                      ++..
T Consensus       234 ~l~~  237 (266)
T 2iwa_A          234 KLHL  237 (266)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.26  E-value=5e-08  Score=78.26  Aligned_cols=186  Identities=8%  Similarity=0.040  Sum_probs=114.0

Q ss_pred             EEEEeCCCCcEEEEecccCcee-----eEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcccccccccCCC
Q 017194           30 FVASSGEDGCICWFDLRSKDVQ-----LVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNK  103 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  103 (375)
                      +|+.+.. +.|+.+++......     ..+......+..++|++++..|+.+ ...+.|..+++..... ..+  .....
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~--~~~~~   78 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI--IRQDL   78 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE--ECTTC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEE--EECCC
Confidence            4444443 47888887754421     1222223467899999976655554 4568999999875432 111  11112


Q ss_pred             cceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec--CCeEEEeeCCCCC
Q 017194          104 EEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGR  180 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~  180 (375)
                      .....+++++++..|+.+. ..+.|.++++.......... ........++++|++..++++...  .+.|..+++.. +
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~  156 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T  156 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C
Confidence            4678899999766655554 56789999986433222222 222467899999976634444433  46888888763 3


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                      ....+...            .......++++|      ++..|+++. ..+.|.++|+..
T Consensus       157 ~~~~~~~~------------~~~~P~gia~d~------~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          157 NRRILAQD------------NLGLPNGLTFDA------FSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             CCEEEECT------------TCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTE
T ss_pred             CcEEEEEC------------CCCCCcEEEEcC------CCCEEEEEECCCCEEEEEecCC
Confidence            33333211            124578899988      566655554 567899999874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.25  E-value=1.6e-09  Score=90.05  Aligned_cols=218  Identities=9%  Similarity=0.011  Sum_probs=141.6

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeE
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ  108 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  108 (375)
                      ..|..++.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|.. ++......   .....+.+
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~  181 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSA  181 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSC
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe---cCCCceee
Confidence            356677778899999988 777666665555666777777775 6667778999999987 54332222   22445677


Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +...+++.. ..++  +.|..+| .+++.+..+. .....+.++...+++.  +..++.++.+..+|. +++.+..+...
T Consensus       182 ~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~~~~~  253 (330)
T 3hxj_A          182 ASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTEKWRFKTG  253 (330)
T ss_dssp             CEECTTCCE-EEES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCEEEEEECS
T ss_pred             eEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCCe--EEEEcCCCeEEEECC-CCCEeEEeeCC
Confidence            777777764 4444  7899999 6777766666 4556788888888874  677777888888874 56666555532


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE  268 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  268 (375)
                                   ...+..+.+.+       +..|.+++.+|.|..+|. +++..                         
T Consensus       254 -------------~~~~~~~~~~~-------~g~l~v~t~~ggl~~~d~-~g~~~-------------------------  287 (330)
T 3hxj_A          254 -------------KRIESSPVIGN-------TDTIYFGSYDGHLYAINP-DGTEK-------------------------  287 (330)
T ss_dssp             -------------SCCCSCCEECT-------TSCEEEECTTCEEEEECT-TSCEE-------------------------
T ss_pred             -------------CCccccceEcC-------CCeEEEecCCCCEEEECC-CCcEE-------------------------
Confidence                         12223344433       456777888888999986 33211                         


Q ss_pred             eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          269 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                     ..+......+.++...   ++|+ |..++.+|.+++...+..
T Consensus       288 ---------------~~~~~~~~~~~~~~~d---~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          288 ---------------WNFETGSWIIATPVID---ENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             ---------------EEEECSSCCCSCCEEC---TTCC-EEEECTTSCEEEEEC---
T ss_pred             ---------------EEEEcCCccccceEEc---CCCE-EEEEcCCCeEEEEecccc
Confidence                           1111123345556665   5665 566888999998877664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.22  E-value=1.9e-08  Score=79.27  Aligned_cols=206  Identities=8%  Similarity=0.003  Sum_probs=131.7

Q ss_pred             eeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194          106 INQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK  183 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  183 (375)
                      ...+.|++++.++++.+.  ++.|+++|+.+++.+..+..+.......+++.  ++.++++.-.++.+.++|..+.+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            578999998644444433  57999999999999888762222233345554  44356666678999999999999988


Q ss_pred             EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccc
Q 017194          184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN  263 (375)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g  263 (375)
                      ++..+.            +.   ...+++      +++.++++..++.|.++|..+.+.......               
T Consensus       101 ~i~~g~------------~~---g~glt~------Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V---------------  144 (266)
T 2iwa_A          101 NFTHQM------------KD---GWGLAT------DGKILYGSDGTSILYEIDPHTFKLIKKHNV---------------  144 (266)
T ss_dssp             EEECCS------------SS---CCEEEE------CSSSEEEECSSSEEEEECTTTCCEEEEEEC---------------
T ss_pred             EEECCC------------CC---eEEEEE------CCCEEEEECCCCeEEEEECCCCcEEEEEEE---------------
Confidence            887430            11   123444      677777778889999999987543321110               


Q ss_pred             cceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhh--h
Q 017194          264 IRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK--N  340 (375)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~  340 (375)
                                           ...+ .-..++.+.|.    +|+..+....++.|.+.|..+++.........+...  .
T Consensus       145 ---------------------g~~~~p~~~~nele~~----dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~  199 (266)
T 2iwa_A          145 ---------------------KYNGHRVIRLNELEYI----NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLID  199 (266)
T ss_dssp             ---------------------EETTEECCCEEEEEEE----TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHH
T ss_pred             ---------------------CCCCcccccceeEEEE----CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccc
Confidence                                 0000 11236677776    677667776789999999999976543322111100  0


Q ss_pred             c--ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          341 I--NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       341 ~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      .  .-....+.++++|...+.++++...+.|.+-++
T Consensus       200 ~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          200 EGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             TTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             ccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            1  112456899999933455666667788877664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.21  E-value=6.8e-08  Score=79.84  Aligned_cols=242  Identities=8%  Similarity=-0.038  Sum_probs=143.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee--------------------cCccEEEEEEeC-CCCeEE
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--------------------GNGPVTSLCFKS-GNEDII   74 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--------------------~~~~v~~l~~~~-~~~~l~   74 (375)
                      ....++++.++ ++++.++..++.|..|+..+++. ..+..                    ....+..+++.+ +++ |+
T Consensus        19 ~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           19 YAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             SCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             CCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence            34567889998 78777888889999999876543 22221                    013578899997 665 55


Q ss_pred             EEcCCCeEEEEECCCCCccccccc-ccC-CCcceeEEEEcC-CCCeEEEEeC-----------------CCcEEEEeCcC
Q 017194           75 YVSSGKEVKSFDVHMPASWRPLES-YNY-NKEEINQIVCNP-KSSFLACADD-----------------GGDVKIIDIRQ  134 (375)
Q Consensus        75 ~~~~d~~i~iwd~~~~~~~~~~~~-~~~-~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~  134 (375)
                      .+...+.|..+|..++.. ..+.. ..+ .......+++.+ ++++.++-..                 ++.|..+|..+
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            554455688888764321 22211 111 113467899999 8876665432                 36788899876


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      ++......  .......++++|+++.++++-...+.|..|++.....  ...+. .            .+. ...+++.+
T Consensus       175 ~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~------------~~g-P~gi~~d~  238 (322)
T 2fp8_A          175 KETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K------------IPN-PGNIKRNA  238 (322)
T ss_dssp             TEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E------------CSS-EEEEEECT
T ss_pred             CEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e------------CCC-CCCeEECC
Confidence            65433222  2234578999999884445556678999999875321  11111 1            123 66788877


Q ss_pred             CccccCCCCEEEEEec----------CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194          213 ADMLDKTNKICVVAKG----------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  282 (375)
Q Consensus       213 ~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~  282 (375)
                            +|++.++...          .+.|..+|...                        +.+              ..
T Consensus       239 ------~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G------------------------~~~--------------~~  274 (322)
T 2fp8_A          239 ------DGHFWVSSSEELDGNMHGRVDPKGIKFDEFG------------------------NIL--------------EV  274 (322)
T ss_dssp             ------TSCEEEEEEEETTSSTTSCEEEEEEEECTTS------------------------CEE--------------EE
T ss_pred             ------CCCEEEEecCcccccccCCCccEEEEECCCC------------------------CEE--------------EE
Confidence                  6876655544          34566665532                        111              11


Q ss_pred             eeeecCC-CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          283 DYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       283 ~~~~~~~-~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      +..-.+. ...+..+++.    +++++++...++.|..+++...
T Consensus       275 ~~~~~g~~~~~~~~~~~~----~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          275 IPLPPPFAGEHFEQIQEH----DGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EECCTTTTTSCCCEEEEE----TTEEEEECSSCSEEEEEEC---
T ss_pred             EECCCCCccccceEEEEe----CCEEEEeecCCCceEEEecccc
Confidence            1111111 2335556553    6777777777889999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.20  E-value=2.3e-08  Score=77.77  Aligned_cols=193  Identities=12%  Similarity=0.106  Sum_probs=125.0

Q ss_pred             eeEEEEcCCCCeEEEEeCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194          106 INQIVCNPKSSFLACADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK  183 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  183 (375)
                      ...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+. . ..........++++.+++..-.++.+.+||..+.+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-L-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-C-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-c-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4678888 666666666665  89999999999998887 3 33444333334455355566678999999999999999


Q ss_pred             EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccc
Q 017194          184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN  263 (375)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g  263 (375)
                      ++..+              ..-..++  +      +++.|+.+..++.|.++|..+.+.......               
T Consensus       122 ti~~~--------------~eG~glt--~------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V---------------  164 (262)
T 3nol_A          122 SFNYD--------------GEGWGLT--H------NDQYLIMSDGTPVLRFLDPESLTPVRTITV---------------  164 (262)
T ss_dssp             EEECS--------------SCCCCEE--E------CSSCEEECCSSSEEEEECTTTCSEEEEEEC---------------
T ss_pred             EEECC--------------CCceEEe--c------CCCEEEEECCCCeEEEEcCCCCeEEEEEEe---------------
Confidence            99865              1112333  3      677788777788999999998543321110               


Q ss_pred             cceeeeeeeecCCcceeEeeeeecCC-CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhh--
Q 017194          264 IRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--  340 (375)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--  340 (375)
                                           ...+. -..++.+.|.    +|+..+..-.++.|.+.|.++++.........+....  
T Consensus       165 ---------------------~~~g~~~~~lNELe~~----~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~  219 (262)
T 3nol_A          165 ---------------------TAHGEELPELNELEWV----DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP  219 (262)
T ss_dssp             ---------------------EETTEECCCEEEEEEE----TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred             ---------------------ccCCccccccceeEEE----CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence                                 01111 1335567775    6777777767889999999999765433222221111  


Q ss_pred             -cccccceeeeeecCCCCCcEEEee
Q 017194          341 -INLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       341 -~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                       ..-....+.||+.| +++.|+..+
T Consensus       220 ~~~~~~vlNGIA~dp-~~~~lfVTG  243 (262)
T 3nol_A          220 LPSPIDVLNGIAWDK-EHHRLFVTG  243 (262)
T ss_dssp             CCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred             ccCcCCceEEEEEcC-CCCEEEEEC
Confidence             11234678999999 555555444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.20  E-value=7e-09  Score=80.62  Aligned_cols=198  Identities=11%  Similarity=0.072  Sum_probs=130.9

Q ss_pred             CCCc--eeEEEEecCCCCEEEEeCCCC--cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc-CCCeEEEEECC
Q 017194           14 HKAT--ATCCIASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVH   88 (375)
Q Consensus        14 h~~~--i~~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d~~i~iwd~~   88 (375)
                      |...  ...+.|+ + +.++.+.+.+|  .|+.+|+++++.+..+.... ........++++.|.... .++.+.++|.+
T Consensus        39 hd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           39 HDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             CCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            5443  4778888 5 67777777766  89999999999988887533 333333333455555544 47899999999


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc-c---cceeEEEEeeCCCcEEEE
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-S---SICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~~l~~  164 (375)
                      +.+....+..-    .  ....++++++.|+.+..++.|.++|..+.+.+..+.... .   ..++.+.|. +|. +++.
T Consensus       116 t~~~~~ti~~~----~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan  187 (262)
T 3nol_A          116 NLRQVRSFNYD----G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFAN  187 (262)
T ss_dssp             TCCEEEEEECS----S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred             cCcEEEEEECC----C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEE
Confidence            86655544431    1  222333577777777777889999999998888876211 1   234567776 665 6666


Q ss_pred             eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      ...+..|.+.|.++++.+..+....-..... .........+.||++|      +++.|++.+..
T Consensus       188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~-~~~~~~~vlNGIA~dp------~~~~lfVTGK~  245 (262)
T 3nol_A          188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAG-PLPSPIDVLNGIAWDK------EHHRLFVTGKL  245 (262)
T ss_dssp             ETTSSEEEEECTTTCBEEEEEECTTGGGGSC-SCCSSCCCEEEEEEET------TTTEEEEEETT
T ss_pred             EccCCeEEEEECCCCcEEEEEECCcCccccc-cccCcCCceEEEEEcC------CCCEEEEECCC
Confidence            6678899999999999999998641000000 0001124578999999      56666666543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.18  E-value=3.9e-08  Score=75.80  Aligned_cols=194  Identities=10%  Similarity=0.096  Sum_probs=124.8

Q ss_pred             ceeEEEEcCCCCeEEEEeCC--CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc
Q 017194          105 EINQIVCNPKSSFLACADDG--GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN  182 (375)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  182 (375)
                      -...+.|++ +.++.+.+.+  ..|+.+|+++++.+..+. . ..........+.++.+++..-.++.+.+||..+.+.+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l-~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-V-PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-C-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-C-CCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            456788886 5555555554  489999999999998887 3 2233333333344436666667899999999999999


Q ss_pred             eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194          183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~  262 (375)
                      .++..+              ..-..++  +      +++.|+++..++.|.++|..+.+.......              
T Consensus        99 ~ti~~~--------------~~Gwglt--~------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V--------------  142 (243)
T 3mbr_X           99 ARFRYP--------------GEGWALT--S------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKV--------------  142 (243)
T ss_dssp             EEEECS--------------SCCCEEE--E------CSSCEEEECSSSEEEEECTTTCCEEEEEEC--------------
T ss_pred             EEEeCC--------------CCceEEe--e------CCCEEEEECCCCeEEEEeCCCCeEEEEEEE--------------
Confidence            999865              2223444  3      577787778899999999998543321110              


Q ss_pred             ccceeeeeeeecCCcceeEeeeeecCC-CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhh-
Q 017194          263 NIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-  340 (375)
Q Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-  340 (375)
                                            ...+. -..++.+.+.    +|+..+..-.+..|.+.|..+++.........+.... 
T Consensus       143 ----------------------~~~g~~~~~lNeLe~~----~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~  196 (243)
T 3mbr_X          143 ----------------------TAGGRPLDNLNELEWV----NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD  196 (243)
T ss_dssp             ----------------------EETTEECCCEEEEEEE----TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT
T ss_pred             ----------------------ccCCcccccceeeEEe----CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc
Confidence                                  00110 1345667764    7777777667789999999999766433322222111 


Q ss_pred             ---cccccceeeeeecCCCCCcEEEe
Q 017194          341 ---INLNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       341 ---~~~~~~v~~~~~~~~~~~~l~s~  363 (375)
                         ..-....+.|++.|...+++++|
T Consensus       197 ~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          197 ALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             SCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cccCCcCCceEEEEEcCCCCEEEEEC
Confidence               11234678999999444455554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.15  E-value=3.3e-08  Score=76.84  Aligned_cols=193  Identities=9%  Similarity=0.011  Sum_probs=126.8

Q ss_pred             eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194          106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  185 (375)
                      ...+.|+ ++.++.+.+.+|.|+++|+++++.+..+. ........+++  +++.+++..-.++.+.+||..+.+.+.++
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l-~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER-LGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE-CTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC-CCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            4678887 35666777788899999999998887763 33222233554  44446666678899999999999999999


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccc
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR  265 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  265 (375)
                      ...              ..-..++  +      +++.|+.+..++.|.++|..+.+.......                 
T Consensus       133 ~~~--------------~eGwGLt--~------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-----------------  173 (268)
T 3nok_A          133 RYS--------------GEGWGLC--Y------WNGKLVRSDGGTMLTFHEPDGFALVGAVQV-----------------  173 (268)
T ss_dssp             ECS--------------SCCCCEE--E------ETTEEEEECSSSEEEEECTTTCCEEEEEEC-----------------
T ss_pred             eCC--------------CceeEEe--c------CCCEEEEECCCCEEEEEcCCCCeEEEEEEe-----------------
Confidence            854              2223344  3      578888888899999999998543322110                 


Q ss_pred             eeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhh----
Q 017194          266 DAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN----  340 (375)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----  340 (375)
                                         ...+ .-..++.+.|.    +|++.+..-.++.|.+.|.++++......-..+....    
T Consensus       174 -------------------~~~g~~v~~lNeLe~~----dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~  230 (268)
T 3nok_A          174 -------------------KLRGQPVELINELECA----NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQV  230 (268)
T ss_dssp             -------------------EETTEECCCEEEEEEE----TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTC
T ss_pred             -------------------CCCCcccccccccEEe----CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccc
Confidence                               0011 11245677775    7777776667889999999999766443333222111    


Q ss_pred             cccccceeeeeecCCCCCcEEEee
Q 017194          341 INLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       341 ~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      ..-....+.|++.|...++++||-
T Consensus       231 ~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          231 TNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cCcCCceEEEEEcCCCCEEEEeCC
Confidence            112346799999994455555553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.14  E-value=3.1e-08  Score=77.02  Aligned_cols=190  Identities=11%  Similarity=0.041  Sum_probs=126.7

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCccccc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      ...+.|+.  +.++.+.+.+|.|+++|+++++.+..+ ... ........++++.|.. .-.++.+.+||.++.+....+
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            46788873  578888889999999999999998877 433 3333222334444444 445789999999986655544


Q ss_pred             ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC-cc---cceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-HS---SICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      ..    ...-..++  ++++.|+.+..++.|.++|.++.+.+..+... +.   ..++.+.|. +|. +++....+..|.
T Consensus       133 ~~----~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~  204 (268)
T 3nok_A          133 RY----SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVL  204 (268)
T ss_dssp             EC----SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred             eC----CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEE
Confidence            43    12223344  56788888878899999999999988887621 11   245677877 665 666666788999


Q ss_pred             EeeCCCCCcceEEecCC--CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194          173 MWDFSKGRPNKIVNFGL--PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK  227 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  227 (375)
                      +.|.++++.+..+.+..  +...  ....-.....+.||++|      +++.|++.+
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~--~~~~~~~~vlNGIA~dp------~~~rlfVTG  253 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVA--GQVTNPEAVLNGIAVEP------GSGRIFMTG  253 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHT--TTCCCTTCCEEEEEECT------TTCCEEEEE
T ss_pred             EEeCCCCcEEEEEECCCCccccc--ccccCcCCceEEEEEcC------CCCEEEEeC
Confidence            99999999999988641  0000  00000124678999998      455555444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=2e-08  Score=91.27  Aligned_cols=202  Identities=11%  Similarity=0.037  Sum_probs=124.9

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCcc----------E-EEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGP----------V-TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE   97 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~----------v-~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   97 (375)
                      ..|+.++.++.|.-+|..+|+.+..+......          + ..+.+  .+..++.++.|+.|..+|.++++..-...
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            45666777889999999999988776543211          0 11222  24568888889999999999987654433


Q ss_pred             cccCC-CcceeEEEEcC--CCCeEEEEeC------CCcEEEEeCcCceeeeeEecCc--c--------------------
Q 017194           98 SYNYN-KEEINQIVCNP--KSSFLACADD------GGDVKIIDIRQHCLYKSLRAGH--S--------------------  146 (375)
Q Consensus        98 ~~~~~-~~~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~--~--------------------  146 (375)
                      ..... ...+.   .+|  .+..++++..      +|.|..+|.++++.+..+....  .                    
T Consensus       145 ~~~~~~~~~~~---~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          145 TTDPAKPYSIT---GAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             CSCTTSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             cCCCCCcceec---CCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            21100 01111   111  1335555543      5899999999999987775110  0                    


Q ss_pred             --------cceeEEEEeeCCCcEEEEeecCC-------------------eEEEeeCCCCCcceEEecCCCCCCCCCCcc
Q 017194          147 --------SICSSVQFIPWKPWEVISGGLDS-------------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQC  199 (375)
Q Consensus       147 --------~~v~~~~~~~~~~~~l~~~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  199 (375)
                              .....+++.|+.. +++.++.++                   .|..+|.++++.+..++....+.-   ...
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w---d~~  297 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW---DFT  297 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS---CCC
T ss_pred             eeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc---ccc
Confidence                    0112467888777 677777665                   499999999999988875310000   000


Q ss_pred             cCCCceeEEeecCCccccCCCC---EEEEEecCCcEEEEeCCCcceeecc
Q 017194          200 YNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       200 ~~~~~v~~~~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                       ...+.....+..      +++   .+++++.+|.++++|..+++.+...
T Consensus       298 -~~~~~~~~d~~~------~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          298 -ATQQITLAELNI------DGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             -CCSCEEEEEEEE------TTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             -CCCCcEEEEecc------CCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence             011111112211      454   6889999999999999998876543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.10  E-value=6.3e-08  Score=80.02  Aligned_cols=238  Identities=10%  Similarity=-0.025  Sum_probs=142.1

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc-----------------CCCcceeEEEEcC-CCCeEEE
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN-----------------YNKEEINQIVCNP-KSSFLAC  120 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~~  120 (375)
                      ....+++|.++++.++++..++.|..|+..++.. ..+....                 .....+..+++.+ ++ .|++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE
Confidence            3456788999998788888889999998875432 1111000                 0013467899998 55 5555


Q ss_pred             EeCCCcEEEEeCcCceeeeeEec---C-cccceeEEEEee-CCCcEEEEeec-----------------CCeEEEeeCCC
Q 017194          121 ADDGGDVKIIDIRQHCLYKSLRA---G-HSSICSSVQFIP-WKPWEVISGGL-----------------DSKLVMWDFSK  178 (375)
Q Consensus       121 ~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------d~~i~~wd~~~  178 (375)
                      +...+.|..+|..+++. ..+..   + .......+++.+ +|. ++++-..                 ++.|..||..+
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            55555688898765532 22220   1 113468899999 886 5555322                 36788898876


Q ss_pred             CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCce
Q 017194          179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQ  257 (375)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      ++...... .             ......++++|      +++.|+++ +..+.|..|++.....               
T Consensus       175 ~~~~~~~~-~-------------~~~p~gia~~~------dg~~lyv~d~~~~~I~~~~~~~~~~---------------  219 (322)
T 2fp8_A          175 KETTLLLK-E-------------LHVPGGAEVSA------DSSFVLVAEFLSHQIVKYWLEGPKK---------------  219 (322)
T ss_dssp             TEEEEEEE-E-------------ESCCCEEEECT------TSSEEEEEEGGGTEEEEEESSSTTT---------------
T ss_pred             CEEEEecc-C-------------CccCcceEECC------CCCEEEEEeCCCCeEEEEECCCCcC---------------
Confidence            65332222 1             13456789988      78866666 5568999999875210               


Q ss_pred             eecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC----------CCeEEEEeCCCcee
Q 017194          258 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----------DKLVKVWDCSRFQG  327 (375)
Q Consensus       258 ~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~  327 (375)
                                          ...+....+.   . ...+++.   ++|++.++...          .+.|..+|.. ++.
T Consensus       220 --------------------~~~~~~~~~~---g-P~gi~~d---~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~  271 (322)
T 2fp8_A          220 --------------------GTAEVLVKIP---N-PGNIKRN---ADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI  271 (322)
T ss_dssp             --------------------TCEEEEEECS---S-EEEEEEC---TTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE
T ss_pred             --------------------CccceEEeCC---C-CCCeEEC---CCCCEEEEecCcccccccCCCccEEEEECCC-CCE
Confidence                                0011111221   2 5678888   88887666544          4678888865 322


Q ss_pred             eeecchhhhhhhhccc----ccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          328 VQTSINNDLLIKNINL----NKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                               +..+...    ...+..+++ . +++++++....+.|..+++
T Consensus       272 ---------~~~~~~~~g~~~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          272 ---------LEVIPLPPPFAGEHFEQIQE-H-DGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             ---------EEEEECCTTTTTSCCCEEEE-E-TTEEEEECSSCSEEEEEEC
T ss_pred             ---------EEEEECCCCCccccceEEEE-e-CCEEEEeecCCCceEEEec
Confidence                     1111111    234555555 3 6666666667788988876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.08  E-value=5.3e-07  Score=70.61  Aligned_cols=215  Identities=8%  Similarity=0.026  Sum_probs=141.8

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      .+.+-.+.+..++|+|+++.++++...++.|...|.. ++.+..+... ......|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4555567899999999855666667788999999988 8877776532 3567888999888776766667899999886


Q ss_pred             CCCcccccccc------cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC---ceeeeeEe------cCcccceeEEE
Q 017194           89 MPASWRPLESY------NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSLR------AGHSSICSSVQ  153 (375)
Q Consensus        89 ~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~------~~~~~~v~~~~  153 (375)
                      .......+...      .........++|+|.++.|+++.+.....+|.++.   ...+..+.      ..+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            54421111111      12345678999999988877777665556665541   11222221      01234578999


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      ++|....+++.......+..+|.. ++.+..+.+....    ......-.....|+|.+      +|++.++ ++.+.++
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~----~~l~~~~~qpEGia~d~------~G~lyIv-sE~n~~y  247 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS----RGLSHNIKQAEGVAMDA------SGNIYIV-SEPNRFY  247 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG----GGCSSCCCSEEEEEECT------TCCEEEE-ETTTEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc----CCcccccCCCCeeEECC------CCCEEEE-cCCceEE
Confidence            999887677777888899999966 6677776654100    00000123568899988      7875555 6667777


Q ss_pred             EEeC
Q 017194          234 VINI  237 (375)
Q Consensus       234 i~d~  237 (375)
                      .|.-
T Consensus       248 ~f~~  251 (255)
T 3qqz_A          248 RFTP  251 (255)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=1.1e-07  Score=86.41  Aligned_cols=159  Identities=11%  Similarity=0.048  Sum_probs=104.1

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecC----ccEEE-EEEeCCCCeEEEEcC------CCeEEEEECCCCCccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGN----GPVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----~~v~~-l~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~   96 (375)
                      +..++.++.|+.|..+|..+|+.+.......    ..+.+ ... .++ .++++..      ++.|..+|.++++..-..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            3467788889999999999999887765421    11111 111 134 4555443      589999999988765433


Q ss_pred             ccccC----------------------------CCcceeEEEEcCCCCeEEEEeCCC-------------------cEEE
Q 017194           97 ESYNY----------------------------NKEEINQIVCNPKSSFLACADDGG-------------------DVKI  129 (375)
Q Consensus        97 ~~~~~----------------------------~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i  129 (375)
                      .....                            +......+++.|+...++.+..++                   .|..
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            32110                            011123478888888888887766                   3999


Q ss_pred             EeCcCceeeeeEecC-cc-------cceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          130 IDIRQHCLYKSLRAG-HS-------SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       130 wd~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      +|.++++.+-.++.. |.       .+.....+..+++  ..++.++.+|.++++|..+|+.+......
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~  343 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG  343 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccc
Confidence            999999998887722 22       2222223334553  25888999999999999999988666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.08  E-value=1.8e-06  Score=80.60  Aligned_cols=292  Identities=9%  Similarity=0.059  Sum_probs=171.6

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-------cCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-------GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV   87 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~   87 (375)
                      ...|.++...++ +.+.+ |..++-|.+||..+++.......       ....|.++...++|.. ..|+.+ -|.+|+.
T Consensus       214 ~~~i~~i~~d~~-g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~  289 (795)
T 4a2l_A          214 TKQIQAILQQSP-TRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHE  289 (795)
T ss_dssp             CCCEEEEEEEET-TEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEET
T ss_pred             CCeeEEEEEcCC-CCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcC
Confidence            456888888776 55444 44333488899877654332211       1357999999888874 445545 5889998


Q ss_pred             CCCCccccccc-----ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec------CcccceeEEEEee
Q 017194           88 HMPASWRPLES-----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA------GHSSICSSVQFIP  156 (375)
Q Consensus        88 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~  156 (375)
                      .++.. ..+..     .......|.++...++|. |..|+.++-|..++..++.. ..+..      .....|.++...+
T Consensus       290 ~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          290 GTDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             TTTEE-EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECT
T ss_pred             CCCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECC
Confidence            75432 11111     111245799999988885 55677777799998765532 22220      1234688998888


Q ss_pred             CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194          157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN  236 (375)
Q Consensus       157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  236 (375)
                      +|.  |..|+.++-|..||..+++.. .+......    .........|.++...+      ++++|.+|+.++-|..||
T Consensus       367 ~g~--lWiGt~~~Gl~~~~~~~~~~~-~~~~~~~~----~~~~l~~~~v~~i~~d~------~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          367 DKN--LWIGTNDGGLNLYNPITQRFT-SYTLQEDE----SARGIGSNNIKAVYVDE------KKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             TSC--EEEEESSSCEEEECTTTCCEE-EECCC----------CCSCSCEEEEEEET------TTTEEEEEETTTEEEEEE
T ss_pred             CCC--EEEEECCCCeEEEcCCCCcEE-EEecCCCC----cccCCCCccEEEEEEcC------CCCEEEEEeCcCceeEEe
Confidence            875  777888878999998765432 22211000    00001235688888876      576577788877899999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL  316 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~  316 (375)
                      ..+++.......                                    .-......|.++...   ++|.+.+... + -
T Consensus       434 ~~~~~~~~~~~~------------------------------------~~~l~~~~v~~i~~d---~~g~lwigt~-~-G  472 (795)
T 4a2l_A          434 RNSGQVENFNQR------------------------------------NSQLVNENVYAILPD---GEGNLWLGTL-S-A  472 (795)
T ss_dssp             TTTCCEEEECTT------------------------------------TSCCSCSCEEEEEEC---SSSCEEEEES-S-C
T ss_pred             CCCCcEEEeecC------------------------------------CCCcCCCeeEEEEEC---CCCCEEEEec-C-c
Confidence            886432111000                                    000124568888887   7787655544 4 4


Q ss_pred             EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |.+||..+++.......   .....-....|.++...+ +|++.+.. .+ .|..|+
T Consensus       473 l~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~-~g~lWigt-~~-Gl~~~~  523 (795)
T 4a2l_A          473 LVRFNPEQRSFTTIEKE---KDGTPVVSKQITTLFRDS-HKRLWIGG-EE-GLSVFK  523 (795)
T ss_dssp             EEEEETTTTEEEECCBC---TTCCBCCCCCEEEEEECT-TCCEEEEE-SS-CEEEEE
T ss_pred             eeEEeCCCCeEEEcccc---ccccccCCceEEEEEECC-CCCEEEEe-CC-ceEEEe
Confidence            88999887643210000   000011235688888877 77655544 33 466665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.06  E-value=2.4e-06  Score=79.71  Aligned_cols=292  Identities=10%  Similarity=0.038  Sum_probs=170.6

Q ss_pred             eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe-eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      |.++...++ +.+.+ +..++-|..|+..+++..... ..+...|.++...+++... .++.++-+..||..+++. ..+
T Consensus       175 i~~i~~d~~-g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~-~~~  250 (795)
T 4a2l_A          175 IASTLYRQG-DQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEI-KNY  250 (795)
T ss_dssp             CEEEEEEET-TEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEE-EEE
T ss_pred             eEEEEECCC-CCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeE-EEe
Confidence            888888877 55444 555445888998776643321 1235678888888877644 455454588999876432 111


Q ss_pred             ccc-----cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec------CcccceeEEEEeeCCCcEEEEe
Q 017194           97 ESY-----NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA------GHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        97 ~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      ...     ......|.++...+++.+. .|+.+ -|.+||..+++.......      .....|.++...++|.  +..|
T Consensus       251 ~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWig  326 (795)
T 4a2l_A          251 LHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLG  326 (795)
T ss_dssp             CCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEE
T ss_pred             ecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEE
Confidence            110     1124569999988888654 45455 588999876654322110      1235789999888885  7788


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      +.++-|..|+..++.. ..+... +.     ........|.++...+      ++. |.+|+.++-|..||..+......
T Consensus       327 t~~~Gl~~~~~~~~~~-~~~~~~-~~-----~~~l~~~~V~~i~~d~------~g~-lWiGt~~~Gl~~~~~~~~~~~~~  392 (795)
T 4a2l_A          327 TYFGGLNYYHPIRNRF-KNIRNI-PY-----KNSLSDNVVSCIVEDK------DKN-LWIGTNDGGLNLYNPITQRFTSY  392 (795)
T ss_dssp             ESSSCEEEECGGGGSS-EEECCC-TT-----SSSCSCSSEEEEEECT------TSC-EEEEESSSCEEEECTTTCCEEEE
T ss_pred             ECCCCeEEeCCCcccc-eEEcCC-CC-----CCCCCCCeeEEEEECC------CCC-EEEEECCCCeEEEcCCCCcEEEE
Confidence            8888899998765432 233211 00     0111235688888876      454 66678777899999876421110


Q ss_pred             ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      ....                               .. ....-....|.++...   ++|++|..|+.++-|..||..++
T Consensus       393 ~~~~-------------------------------~~-~~~~l~~~~v~~i~~d---~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          393 TLQE-------------------------------DE-SARGIGSNNIKAVYVD---EKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             CCC--------------------------------------CCSCSCEEEEEEE---TTTTEEEEEETTTEEEEEETTTC
T ss_pred             ecCC-------------------------------CC-cccCCCCccEEEEEEc---CCCCEEEEEeCcCceeEEeCCCC
Confidence            0000                               00 0000123568999888   78874666677677999998876


Q ss_pred             eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +...-...     ........|.++...+ ++++.+.. .+ .|.+|+.
T Consensus       438 ~~~~~~~~-----~~~l~~~~v~~i~~d~-~g~lwigt-~~-Gl~~~~~  478 (795)
T 4a2l_A          438 QVENFNQR-----NSQLVNENVYAILPDG-EGNLWLGT-LS-ALVRFNP  478 (795)
T ss_dssp             CEEEECTT-----TSCCSCSCEEEEEECS-SSCEEEEE-SS-CEEEEET
T ss_pred             cEEEeecC-----CCCcCCCeeEEEEECC-CCCEEEEe-cC-ceeEEeC
Confidence            43211000     0012345688888776 66644443 34 4666653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.05  E-value=4.9e-07  Score=69.71  Aligned_cols=199  Identities=13%  Similarity=0.078  Sum_probs=128.0

Q ss_pred             cCCCc--eeEEEEecCCCCEEEEeCCC--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEEC
Q 017194           13 GHKAT--ATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDV   87 (375)
Q Consensus        13 ~h~~~--i~~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~   87 (375)
                      .|...  ...+.|++  +.++.+.+.+  ..|+.+|+++++.+..+..... .......+.++.|.. .-.++.+.++|.
T Consensus        16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            45543  56889985  4667777765  4899999999999888765332 222222223444444 445789999999


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC-cc---cceeEEEEeeCCCcEEE
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-HS---SICSSVQFIPWKPWEVI  163 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~l~  163 (375)
                      ++.+....+..-   . .=..+  .+++..|+.+..++.|.++|..+.+.+.++... +.   ..++.+.+. +|. +++
T Consensus        93 ~tl~~~~ti~~~---~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lya  164 (243)
T 3mbr_X           93 ATLTPRARFRYP---G-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLA  164 (243)
T ss_dssp             TTTEEEEEEECS---S-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred             CcCcEEEEEeCC---C-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEE
Confidence            876554444321   1 22334  356777777777899999999999888887621 11   245667766 554 566


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  228 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  228 (375)
                      ....+..|.+.|.++++.+..+.+..-...............+.|+++|      +++.|++.+.
T Consensus       165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~------~~~~lfVTGK  223 (243)
T 3mbr_X          165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA------EHDRLFVTGK  223 (243)
T ss_dssp             EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET------TTTEEEEEET
T ss_pred             EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC------CCCEEEEECC
Confidence            6657889999999999999999865110000000001234678999999      5565555543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.04  E-value=9.8e-08  Score=84.96  Aligned_cols=159  Identities=9%  Similarity=0.023  Sum_probs=99.7

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCc----cEEE-EEEeCCCCeEEEEcC------CCeEEEEECCCCCccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----PVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~v~~-l~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~   96 (375)
                      +..++.++.|+.|..+|..+|+.+........    .+.+ .... ++ .+++++.      ++.|..+|.++++..-..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            35677788899999999999998776653210    1211 1111 34 4555554      789999999988754332


Q ss_pred             ccccCC----------------------------------Cc-ceeEEEEcCCCCeEEEEeCC----------------C
Q 017194           97 ESYNYN----------------------------------KE-EINQIVCNPKSSFLACADDG----------------G  125 (375)
Q Consensus        97 ~~~~~~----------------------------------~~-~v~~~~~~~~~~~l~~~~~d----------------g  125 (375)
                      ......                                  .. ....+++.++...++.+..+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            221100                                  00 01235666766677776532                3


Q ss_pred             cEEEEeCcCceeeeeEecC-ccc----ceeE---EEEeeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          126 DVKIIDIRQHCLYKSLRAG-HSS----ICSS---VQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~-~~~----~v~~---~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      .|..+|.++++.+-.++.. |..    .+..   +...++|+  .+++.++.+|.+.++|..+++.+......
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~  345 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD  345 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence            5999999999998877622 110    1111   22224663  25778889999999999999998887754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.03  E-value=3e-08  Score=90.27  Aligned_cols=115  Identities=8%  Similarity=0.044  Sum_probs=74.8

Q ss_pred             EEEEecCCCCEEEEeCCCC-----------cEEEEecccCcee--eEeee-cCccEEEEEEeCCCCeEEEEcC-CCeEEE
Q 017194           20 CCIASRDRPGFVASSGEDG-----------CICWFDLRSKDVQ--LVTDV-GNGPVTSLCFKSGNEDIIYVSS-GKEVKS   84 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~-----------~i~iw~~~~~~~~--~~~~~-~~~~v~~l~~~~~~~~l~~~~~-d~~i~i   84 (375)
                      ++++.|.++++++.|+.+.           .+.+||..+++-.  ..+.. +.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            5577773378888886542           5889999887642  22222 2233345777889999998885 458999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-CC-----CcEEEEeCcCce
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DG-----GDVKIIDIRQHC  136 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~  136 (375)
                      ||..+.+ +..+..... ...-.+++..++++.++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~-W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDS-WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTE-EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCc-eeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            9988653 343333321 11223456667899999888 34     569999998764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.02  E-value=4.4e-07  Score=74.32  Aligned_cols=225  Identities=12%  Similarity=0.010  Sum_probs=134.0

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC--CeEEEEECCCCCcc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPASW   93 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~   93 (375)
                      .....++|+++ ++++++-..++.|..||... +....+. ....+..+++.++++.+++....  ..|..++..+++. 
T Consensus        32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-  107 (306)
T 2p4o_A           32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-  107 (306)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred             CCcceEEECCC-CCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-
Confidence            45678999998 78777777889999999765 3333333 24568899999999866554332  2477777766543 


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEe--------cCcccceeEEEEeeCCCcEEEE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLR--------AGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~--------~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      ..+..... ......++..+++..+++-..++.|+++|...++. +....        ...-...+.+  +|++++++++
T Consensus       108 ~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~  184 (306)
T 2p4o_A          108 ETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS  184 (306)
T ss_dssp             EEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred             EEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence            22222211 12234455555554444444688999999865421 11100        0111234555  7888756667


Q ss_pred             eecCCeEEEeeCCC-CCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          165 GGLDSKLVMWDFSK-GRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       165 ~~~d~~i~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      -...+.|..||+.. ++.  ...+. .             ......+++.+      +|+++++....+.|.++|.. ++
T Consensus       185 d~~~~~I~~~~~~~~g~~~~~~~~~-~-------------~~~P~gi~vd~------dG~l~va~~~~~~V~~~~~~-G~  243 (306)
T 2p4o_A          185 NTEKMLLLRIPVDSTDKPGEPEIFV-E-------------QTNIDDFAFDV------EGNLYGATHIYNSVVRIAPD-RS  243 (306)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEE-E-------------SCCCSSEEEBT------TCCEEEECBTTCCEEEECTT-CC
T ss_pred             eCCCCEEEEEEeCCCCCCCccEEEe-c-------------cCCCCCeEECC------CCCEEEEeCCCCeEEEECCC-CC
Confidence            67788999999875 322  11111 0             12345677877      78876666677899999976 33


Q ss_pred             eeec-ccccCCCCCCceeec---ccccceee
Q 017194          242 NISR-SKSTTKPLKGSQSTS---KVNIRDAE  268 (375)
Q Consensus       242 ~~~~-~~~~~~~~~~~~~~s---~~g~~~~~  268 (375)
                      .... ..........+++|.   ||+..|..
T Consensus       244 ~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV  274 (306)
T 2p4o_A          244 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV  274 (306)
T ss_dssp             EEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             EEEEeecccccCCceEEEEecccCCCCEEEE
Confidence            2211 111122445677777   78776654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.00  E-value=2.2e-07  Score=82.76  Aligned_cols=202  Identities=11%  Similarity=0.042  Sum_probs=120.0

Q ss_pred             CEEEEeCC-CCcEEEEec-ccCceeeEeeecCc-c---------E-EEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           29 GFVASSGE-DGCICWFDL-RSKDVQLVTDVGNG-P---------V-TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        29 ~~l~s~~~-d~~i~iw~~-~~~~~~~~~~~~~~-~---------v-~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      ..++.++. ++.|.-+|. .+|+.+........ .         + ..++.  .+..++.++.|+.|..+|.++++..-.
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            35555666 789999999 89998776653221 0         0 11222  245788888899999999998876543


Q ss_pred             cccccC-CCcceeE-EEEcCCCCeEEEEeC------CCcEEEEeCcCceeeeeEecCcccc-------------------
Q 017194           96 LESYNY-NKEEINQ-IVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSI-------------------  148 (375)
Q Consensus        96 ~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~-------------------  148 (375)
                      ...-.. ....+.+ ...  .+..+++++.      ++.|..+|.++++.+.++. .....                   
T Consensus       141 ~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~-~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF-ATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE-SSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             ecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc-cCCCccccccCccccccccccccc
Confidence            322110 0001211 111  1335666654      7899999999999887776 21110                   


Q ss_pred             -------------------eeEEEEeeCCCcEEEEeecC----------------CeEEEeeCCCCCcceEEecCCCCCC
Q 017194          149 -------------------CSSVQFIPWKPWEVISGGLD----------------SKLVMWDFSKGRPNKIVNFGLPENN  193 (375)
Q Consensus       149 -------------------v~~~~~~~~~~~~l~~~~~d----------------~~i~~wd~~~~~~~~~~~~~~~~~~  193 (375)
                                         ...+++.++.. .+..+..+                +.|..+|.++++.+..++....+.-
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~  296 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence                               02356677655 45555432                3699999999999888875310000


Q ss_pred             CCCCcccCCCceeEEeecCCccccCCC---CEEEEEecCCcEEEEeCCCcceeecc
Q 017194          194 GNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                      .   .-....++. +...+      ++   +.++.++.+|.++++|..+++.....
T Consensus       297 d---~~~~~~p~l-~~~~~------~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          297 D---FAGVNQMVL-TDQPV------NGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             C---CCCCCCCEE-EEEEE------TTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             c---cccCCCCEE-Eeccc------CCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence            0   000011111 12112      46   36778899999999999998776554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.99  E-value=1.8e-06  Score=73.00  Aligned_cols=208  Identities=11%  Similarity=-0.042  Sum_probs=131.0

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeEEEEECCCCCcc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASW   93 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~   93 (375)
                      ......++|.+.++.++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.++..... 
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence            34567899998746666666677889999988665434333333455778898755544 4445567888888874321 


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEe-CC-CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACAD-DG-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                      ..+.  .........+++.|.+..|+... .. +.|..+++.......... ..-...+.|+++|++..++++-+..+.|
T Consensus       194 ~~l~--~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I  270 (386)
T 3v65_B          194 KVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVI  270 (386)
T ss_dssp             EEEE--CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEee--cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence            2211  11134578899999776666554 33 678888876433322222 2334578999998777566666677899


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                      ..+|+.... ...+...            .......|++.       .+.++++-...+.|..++..++......
T Consensus       271 ~~~d~dG~~-~~~~~~~------------~~~~P~giav~-------~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          271 ERANLDGSH-RKAVISQ------------GLPHPFAITVF-------EDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EEECTTSCS-CEEEECS------------SCSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEeCCCCe-eEEEEEC------------CCCCceEEEEE-------CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            999987433 3333211            12345677774       3666666667888999986665544433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.98  E-value=7.8e-07  Score=79.22  Aligned_cols=205  Identities=10%  Similarity=0.031  Sum_probs=124.5

Q ss_pred             CEEEEeCC-CCcEEEEec-ccCceeeEeeecCcc-----------EEEEEEeCCCCe----EEEEcCCCeEEEEECCCCC
Q 017194           29 GFVASSGE-DGCICWFDL-RSKDVQLVTDVGNGP-----------VTSLCFKSGNED----IIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        29 ~~l~s~~~-d~~i~iw~~-~~~~~~~~~~~~~~~-----------v~~l~~~~~~~~----l~~~~~d~~i~iwd~~~~~   91 (375)
                      ..|+.++. ++.|.-+|. .+|+.+-........           ...+++.|.+..    ++.++.|+.|..+|.++++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            35666666 789999999 899987776542210           123455444445    8888889999999999887


Q ss_pred             cccccccccC-CCcceeE-EEEcCCCCeEEEEe------CCCcEEEEeCcCceeeeeEecCcccc---------------
Q 017194           92 SWRPLESYNY-NKEEINQ-IVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLRAGHSSI---------------  148 (375)
Q Consensus        92 ~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~---------------  148 (375)
                      ..-....... ....+.+ ..+. ++ .+++++      .++.|+.+|.++++.+-.+. .....               
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~-~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY-ATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE-SSSCHHHHTBCTTTTTTCGG
T ss_pred             EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccccccc
Confidence            6433322110 0001111 1111 34 555554      37999999999999887776 22111               


Q ss_pred             ----------------------e-eEEEEeeCCCcEEEEeecC----------------CeEEEeeCCCCCcceEEecCC
Q 017194          149 ----------------------C-SSVQFIPWKPWEVISGGLD----------------SKLVMWDFSKGRPNKIVNFGL  189 (375)
Q Consensus       149 ----------------------v-~~~~~~~~~~~~l~~~~~d----------------~~i~~wd~~~~~~~~~~~~~~  189 (375)
                                            + ..+++.+... +++.+..+                +.|..+|.++++.+..++...
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                                  0 1345666666 56666554                489999999999988887541


Q ss_pred             CCCCCCCCcccCCCceeEEeec-CCccccCCC---CEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          190 PENNGNAGQCYNPAFVHAIAIP-DADMLDKTN---KICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      .+.-   .......++. +... .      ++   ..++.++.+|.+.++|..+++.+....
T Consensus       299 ~d~w---d~d~~~~p~l-~d~~~~------~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          299 HDEW---DYAGVNVMML-SEQKDK------DGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             TCSS---CCCCCCCCEE-EEEECT------TSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             Cccc---cccCCCccEE-Eecccc------CCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            1000   0000001111 1221 2      46   567888999999999999988776543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.98  E-value=6.6e-06  Score=68.52  Aligned_cols=198  Identities=8%  Similarity=0.028  Sum_probs=121.3

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcc
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASW   93 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~   93 (375)
                      .+..+|.+..++ + +|+.+.. ..|+..++........+. ....+..++|.+.+..|+.+ ...+.|..+++......
T Consensus        33 ~d~~~C~~~~~~-~-~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~  108 (349)
T 3v64_C           33 PDRRSCKALGPE-P-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE  108 (349)
T ss_dssp             TTSSCEEESSSC-C-EEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCCCcccccccC-c-eeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence            345566666654 4 3433332 458888887655443333 34557899999766655544 45688999998754322


Q ss_pred             cccccccCCCcceeEEEEcCCCCeE-EEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC-CeE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-SKL  171 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i  171 (375)
                      ..+.   ........+++.+.+..| ++-...+.|.+.+++.......+. ..-.....+++.|.+..++++-... +.|
T Consensus       109 ~~~~---~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          109 EVVS---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             EEEC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             EEEe---CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            2111   112345788998755555 444566789999986543333333 3345678999999776556665555 789


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                      ..+++... ....+...            .-...+.|+++|      ++..|+.+. ..+.|..+|+..
T Consensus       185 ~r~~~dG~-~~~~~~~~------------~~~~PnGla~d~------~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          185 EASSMDGS-GRRIIADT------------HLFWPNGLTIDY------AGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEETTSC-SCEESCCS------------SCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeCCCC-CcEEEEEC------------CCCCcceEEEeC------CCCEEEEEECCCCEEEEEeCCC
Confidence            98887643 33332111            124578999997      455555554 567899998874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.98  E-value=3.6e-06  Score=70.10  Aligned_cols=206  Identities=11%  Similarity=-0.022  Sum_probs=129.5

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeEEEEECCCCCccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      ..+..++|.+.++.++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.++..... .
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~  151 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  151 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-E
Confidence            3467889998745566666677889999988665444333333456789998755444 5555568999999874322 2


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEe-CC-CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACAD-DG-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      .+.  .........+++.|.+..|+... .. +.|..+++.... ...+....-...+.|+++|++..++++-...+.|.
T Consensus       152 ~l~--~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          152 VLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             EEE--CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEE--eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            221  11134568899999766665554 34 678888876432 22222023345789999987775666666778999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      .+|+... ....+...            .......+++.       ++.++++-...+.|..++..++.....
T Consensus       229 ~~~~dG~-~~~~~~~~------------~~~~P~giav~-------~~~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          229 RANLDGS-HRKAVISQ------------GLPHPFAITVF-------EDSLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             EEETTSC-SCEEEECS------------SCSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEeCCCC-ceEEEEeC------------CCCCceEEEEE-------CCEEEEecCCCCeEEEEEccCCCccEE
Confidence            9998743 33333211            12345677773       366666666778898888665544433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=5.4e-06  Score=77.25  Aligned_cols=320  Identities=9%  Similarity=0.004  Sum_probs=177.3

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-------ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      ..|.++...++ +.+.+ |..+ -+.+||..+++......       .....|.++...++|. |..|+..+-|.++|..
T Consensus       211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred             CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence            46888888777 55544 3444 48889987665432211       1245789998888876 5556665678889987


Q ss_pred             CCCcccccc-----------cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe---------cCcccc
Q 017194           89 MPASWRPLE-----------SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR---------AGHSSI  148 (375)
Q Consensus        89 ~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~  148 (375)
                      +........           ........|.++...+++. |..|+.++-|..++..+.... .+.         ......
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~  364 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKV  364 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSC
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcc
Confidence            643211111           0112245788998888775 666776777999987654332 221         012356


Q ss_pred             eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec
Q 017194          149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  228 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  228 (375)
                      |.++...+++.  |..|+.++-|..||..+++... +...         .......|.++...+      ++. |.+|+.
T Consensus       365 v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~~---------~~~~~~~v~~i~~d~------~g~-lWigt~  425 (781)
T 3v9f_A          365 VSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIY-NKEN---------RELLSNSVLCSLKDS------EGN-LWFGTY  425 (781)
T ss_dssp             EEEEEECTTSC--EEEEEBSSCEEEEETTEEEEEC-C--------------CCCSBEEEEEECT------TSC-EEEEET
T ss_pred             eEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEE-ccCC---------CCCCCcceEEEEECC------CCC-EEEEec
Confidence            88888888775  7777777779999976543211 1100         001235688888865      454 555777


Q ss_pred             CCcEEEEeCCCcceeeccc-ccCCCCCCceeecccccceeee--e--eeecCCcceeEeeeeec---CCCccEEEEEEee
Q 017194          229 DGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNIRDAEM--E--ILDQSGGKRLHLDYSVG---GHTAAASCVAFSM  300 (375)
Q Consensus       229 dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~--~--~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~  300 (375)
                      ++-|..+|..+++...... ......+.++...++|...+..  |  .++.... .........   .....|.++... 
T Consensus       426 ~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d-  503 (781)
T 3v9f_A          426 LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQD-  503 (781)
T ss_dssp             TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEEC-
T ss_pred             cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCC-eEEecccCcccccccceeEEEEEc-
Confidence            6779999987654332221 1122344455556666644321  1  1111111 111111111   113578899887 


Q ss_pred             cCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          301 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       301 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                        ++|.+.+....+| |..||..+.+...-.      ....-....|.++...+ +|.+.++. .+|.|..|+
T Consensus       504 --~~g~lWigt~~~G-l~~~~~~~~~~~~~~------~~~~l~~~~i~~i~~d~-~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          504 --SEGRFWIGTFGGG-VGIYTPDMQLVRKFN------QYEGFCSNTINQIYRSS-KGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             --TTCCEEEEESSSC-EEEECTTCCEEEEEC------TTTTCSCSCEEEEEECT-TSCEEEEE-TTEEEEESC
T ss_pred             --CCCCEEEEEcCCC-EEEEeCCCCeEEEcc------CCCCCCCCeeEEEEECC-CCCEEEEE-CCCceEEEC
Confidence              7887655444344 778888765322100      00011245678887776 66654443 355436655

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.96  E-value=5.3e-06  Score=70.15  Aligned_cols=196  Identities=8%  Similarity=0.030  Sum_probs=119.4

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~   95 (375)
                      .-.|.+..+. + +|+.+.. ..|+..++........+. ....+..++|.+.+..|+.+ ...+.|..+++........
T Consensus        78 ~~~C~~~~~~-~-~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  153 (386)
T 3v65_B           78 RRSCKALGPE-P-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  153 (386)
T ss_dssp             SSCEEECSSC-C-EEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred             CCeECCcccc-c-eeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence            3445554443 3 4443333 468888887665444443 34567899999765555544 4568899999875432121


Q ss_pred             cccccCCCcceeEEEEcCCCCeEE-EEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC-CeEEE
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-SKLVM  173 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~  173 (375)
                      +.   ........+++.+.+..|+ +-...+.|.+.+++.......+. ........+++.|.+..++++-... +.|..
T Consensus       154 ~~---~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          154 VS---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             EC---SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             Ee---CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence            11   1123456788887655554 44456789888886543333333 3345679999999877555555555 78999


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIES  239 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  239 (375)
                      +++... ....+...            .-...+.|+++|      ++..|+.+ ...+.|..+|+..
T Consensus       230 ~~~dG~-~~~~~~~~------------~~~~PnGlavd~------~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          230 SSMDGS-GRRIIADT------------HLFWPNGLTIDY------AGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EETTSC-SCEEEECS------------SCSCEEEEEEEG------GGTEEEEEETTTTEEEEECTTS
T ss_pred             EeCCCC-CcEEEEEC------------CCCCeeeEEEeC------CCCEEEEEECCCCEEEEEeCCC
Confidence            887643 33333211            124578999987      45555555 4567888888764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.94  E-value=1.8e-06  Score=70.68  Aligned_cols=239  Identities=6%  Similarity=-0.050  Sum_probs=133.7

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC--cEEEEeCcCce
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVKIIDIRQHC  136 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~  136 (375)
                      .....++|+++++.+++-..++.|..||.... ... ....   ......+++.++++++++.....  .|..+|..+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-HATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-EEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-EEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            45778999999987666667889999998742 211 1111   35688999999998665554332  47777777776


Q ss_pred             eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194          137 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML  216 (375)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (375)
                      ...............++..+.+. .+++-..++.|+.+|...++........  ..... .........+.+  +|    
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~--~~~~~-~~~~~~~~pngi--s~----  176 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHP--MLARS-NSESVFPAANGL--KR----  176 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECG--GGSCS-STTCCSCSEEEE--EE----
T ss_pred             EEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECC--ccccc-cccCCCCcCCCc--Cc----
Confidence            54333211122334555555443 4555446889999997654211111000  00000 000001233445  55    


Q ss_pred             cCCCCEEEEE-ecCCcEEEEeCCC-cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEE
Q 017194          217 DKTNKICVVA-KGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS  294 (375)
Q Consensus       217 ~~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  294 (375)
                        +++.|+++ ...+.|..|++.. +...                                   ..+....+    ....
T Consensus       177 --dg~~lyv~d~~~~~I~~~~~~~~g~~~-----------------------------------~~~~~~~~----~~P~  215 (306)
T 2p4o_A          177 --FGNFLYVSNTEKMLLLRIPVDSTDKPG-----------------------------------EPEIFVEQ----TNID  215 (306)
T ss_dssp             --ETTEEEEEETTTTEEEEEEBCTTSCBC-----------------------------------CCEEEEES----CCCS
T ss_pred             --CCCEEEEEeCCCCEEEEEEeCCCCCCC-----------------------------------ccEEEecc----CCCC
Confidence              56655555 4567899999874 1100                                   00111111    2345


Q ss_pred             EEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec---CCCCCcEEEeeC
Q 017194          295 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT---PTESENLVVCDT  365 (375)
Q Consensus       295 ~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~s~~~  365 (375)
                      .++++   ++|+++++....+.|.+++.. ++..       .+...........+++|.   | +++.|+.++.
T Consensus       216 gi~vd---~dG~l~va~~~~~~V~~~~~~-G~~~-------~~~~~~~~~~~p~~~a~~g~~~-d~~~LyVt~~  277 (306)
T 2p4o_A          216 DFAFD---VEGNLYGATHIYNSVVRIAPD-RSTT-------IIAQAEQGVIGSTAVAFGQTEG-DCTAIYVVTN  277 (306)
T ss_dssp             SEEEB---TTCCEEEECBTTCCEEEECTT-CCEE-------EEECGGGTCTTEEEEEECCSTT-TTTEEEEEEC
T ss_pred             CeEEC---CCCCEEEEeCCCCeEEEECCC-CCEE-------EEeecccccCCceEEEEecccC-CCCEEEEECC
Confidence            67888   899888777778899999976 3211       011111123457889998   6 7666666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.90  E-value=1.7e-06  Score=77.21  Aligned_cols=161  Identities=9%  Similarity=-0.059  Sum_probs=99.9

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCc----cEE-EEEEeC---CCC-eEEEEc------CCCeEEEEECCCCCc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----PVT-SLCFKS---GNE-DIIYVS------SGKEVKSFDVHMPAS   92 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~v~-~l~~~~---~~~-~l~~~~------~d~~i~iwd~~~~~~   92 (375)
                      +..++.++.|+.|.-+|..+|+.+........    .+. ......   +++ .+++++      .++.|+.+|.++++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            34677778899999999999998776654321    111 111111   233 455554      278999999998765


Q ss_pred             ccccccccC--------------------------------------CCcceeEEEEcCCCCeEEEEeC-----------
Q 017194           93 WRPLESYNY--------------------------------------NKEEINQIVCNPKSSFLACADD-----------  123 (375)
Q Consensus        93 ~~~~~~~~~--------------------------------------~~~~v~~~~~~~~~~~l~~~~~-----------  123 (375)
                      .-.......                                      ....-..+++.|+..+++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            432211000                                      0001123566777777777663           


Q ss_pred             ---------C----CcEEEEeCcCceeeeeEecC-ccc----ceeE-EEEe---eCCC--cEEEEeecCCeEEEeeCCCC
Q 017194          124 ---------G----GDVKIIDIRQHCLYKSLRAG-HSS----ICSS-VQFI---PWKP--WEVISGGLDSKLVMWDFSKG  179 (375)
Q Consensus       124 ---------d----g~i~iwd~~~~~~~~~~~~~-~~~----~v~~-~~~~---~~~~--~~l~~~~~d~~i~~wd~~~~  179 (375)
                               |    +.|..+|.++++.+-.++.. |..    .+.. +.+.   .+|+  ..++.++.+|.++++|.+++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    57999999999998887622 211    1111 1122   3553  26888999999999999999


Q ss_pred             CcceEEecC
Q 017194          180 RPNKIVNFG  188 (375)
Q Consensus       180 ~~~~~~~~~  188 (375)
                      +.+..+...
T Consensus       357 ~~lw~~~~~  365 (582)
T 1flg_A          357 KLQNAFPFV  365 (582)
T ss_dssp             CEEEEEESS
T ss_pred             CEecccccc
Confidence            998887754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.89  E-value=1.5e-05  Score=65.36  Aligned_cols=179  Identities=11%  Similarity=0.026  Sum_probs=111.7

Q ss_pred             CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCC---CcccccccccCCCcceeEEEEcC
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMP---ASWRPLESYNYNKEEINQIVCNP  113 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~  113 (375)
                      ..|+..|+.+.+....+. ....+..++|.+.+..|+.+ ...+.|..+++...   .....+  ..........+++.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~   86 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDW   86 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSSCSCCCEEEEET
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEee
Confidence            458999998776555444 34567899999876555544 45689999998751   111111  111123457889987


Q ss_pred             CCCeEE-EEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC-CeEEEeeCCCCCcceEEecCCCC
Q 017194          114 KSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-SKLVMWDFSKGRPNKIVNFGLPE  191 (375)
Q Consensus       114 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~  191 (375)
                      .+..|+ +-...+.|.++++........+. ........+++.|.+..++++.... +.|...++. +.....+...   
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~---  161 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE---  161 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS---
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC---
Confidence            555554 44567889999987543333333 3345678999999776455554443 788888875 4444433211   


Q ss_pred             CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                               .-...+.|+++|      ++..|+.+. ..+.|..+|+..
T Consensus       162 ---------~~~~P~gla~d~------~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          162 ---------NIQWPNGITLDL------LSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             ---------SCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred             ---------CCCCceEEEEec------cCCEEEEEECCCCeEEEEecCC
Confidence                     124678999987      455555554 567899999874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.87  E-value=1.9e-05  Score=64.78  Aligned_cols=207  Identities=13%  Similarity=-0.006  Sum_probs=127.5

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEeccc----CceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeEEEEECCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHM   89 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~   89 (375)
                      -.....++|.+.++.++++-..++.|..+++..    ......+...-.....+++.+.+..| ++-...+.|.+.++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            345678999987456666666778999999876    22222232222456789998755544 4446678999999874


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCC--CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDG--GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .. ...+..  ........+++.|.+..|+.+...  +.|...++.. +....+....-...+.+++++++..++++-..
T Consensus       109 ~~-~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          109 VK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             SS-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             Cc-eEEEEE--CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECC
Confidence            32 222211  113457889999977666655542  6788888753 33333321233467899999987755566667


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      .+.|..+|+.. .....+....       .   .......+++.       .+.++++-...+.|..++..+++..
T Consensus       185 ~~~I~~~d~dg-~~~~~~~~~~-------~---~~~~P~giav~-------~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          185 LHSISSIDVNG-GNRKTILEDE-------K---RLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             TTEEEEEETTS-CSCEEEEECT-------T---TTSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCeEEEEecCC-CceEEEeecC-------C---ccCCcEEEEEE-------CCEEEEEECCCCeEEEEeCCCCcce
Confidence            78999999874 3333332110       0   11345677774       3666666667789999998765443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.85  E-value=2.3e-05  Score=64.62  Aligned_cols=280  Identities=9%  Similarity=-0.034  Sum_probs=147.1

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee----ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD----VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      ...+.++.|.+. +..+++ +.+|.| +...+.++.=..+.    .....+.++.|.+ +. +++++..+.|.. ....+
T Consensus        35 ~~~~~~v~~~~~-~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDR-HHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSS-SCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred             CCcEEEEEECCC-CcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence            457889998766 566664 456654 33334343211111    1245788999986 44 444455665443 33435


Q ss_pred             CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      +.+..+.....+...+..+.+.+++..++++ .+|.|.. ..+.++.-..........+..+.+.|++. +++.+ .+|.
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~  184 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGS  184 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSS
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCc
Confidence            5555544322223456778777777666555 4565433 22234333333224556788999999876 45554 4555


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT  250 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  250 (375)
                      +..-+-..++.-..+...            ....+..+.+.+      ++.++ .++.+|.+++.+...++         
T Consensus       185 ~~~S~d~gG~tW~~~~~~------------~~~~~~~~~~~~------~g~~~-~~~~~G~~~~s~~D~G~---------  236 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHNRT------------TSRRLHNMGFTP------DGRLW-MIVNGGKIAFSDPDNSE---------  236 (327)
T ss_dssp             EEEEECTTCSSCEEEECC------------SSSCEEEEEECT------TSCEE-EEETTTEEEEEETTEEE---------
T ss_pred             EEEEeCCCCCceeECCCC------------CCCccceeEECC------CCCEE-EEeCCceEEEecCCCCC---------
Confidence            443321113333333322            245678888877      56655 44567777665422111         


Q ss_pred             CCCCCceeecccccceeeeeeeecCCcceeEeeeee-cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee
Q 017194          251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  329 (375)
Q Consensus       251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  329 (375)
                                                  .+..+..- ..+...+..+++.   +++.+++++. +|.| ++..+.++.- 
T Consensus       237 ----------------------------tW~~~~~~~~~~~~~~~~v~~~---~~~~~~~~g~-~g~i-~~S~DgG~tW-  282 (327)
T 2xbg_A          237 ----------------------------NWGELLSPLRRNSVGFLDLAYR---TPNEVWLAGG-AGAL-LCSQDGGQTW-  282 (327)
T ss_dssp             ----------------------------EECCCBCTTSSCCSCEEEEEES---SSSCEEEEES-TTCE-EEESSTTSSC-
T ss_pred             ----------------------------eeEeccCCcccCCcceEEEEec---CCCEEEEEeC-CCeE-EEeCCCCccc-
Confidence                                        11111000 0122357888888   7777777665 5666 3444444211 


Q ss_pred             ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          330 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                           ..+.........+..+.+.+ ++ .+++++.+|.|.-++
T Consensus       283 -----~~~~~~~~~~~~~~~v~~~~-~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          283 -----QQDVDVKKVPSNFYKILFFS-PD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             -----EECGGGTTSSSCCCEEEEEE-TT-EEEEECSTTEEEEEC
T ss_pred             -----EEcCccCCCCCCeEEEEEEC-CC-ceEEEcCCceEEEEc
Confidence                 11111112335667787765 44 466777888877654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.85  E-value=2.6e-05  Score=66.24  Aligned_cols=209  Identities=11%  Similarity=-0.008  Sum_probs=129.5

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC----ceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~   88 (375)
                      ....+..++|++.++.++.+-...+.|..+++...    .....+...-.....+++.+. ++..++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            44567889999874556666666788999988752    223333333456788999874 4444455556899999987


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      .......+.   ........+++.|.+.+|+....  .+.|...++........+. ..-...+.|++++++..++++-.
T Consensus       190 g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          190 GVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             TCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCEEEEEEC
Confidence            533222221   11345788999997767666652  3679888886443333333 33356789999988775555556


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ..+.|..+|+............        .   .......+++.       .+.++++-...+.|..+|..++....
T Consensus       266 ~~~~I~~~d~dG~~~~~~~~~~--------~---~l~~P~gl~v~-------~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          266 KLHSISSIDVNGGNRKTILEDE--------K---RLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             TTTEEEEEETTSCCCEEEEECS--------S---TTSSEEEEEEE-------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             CCCEEEEEeCCCCccEEEEeCC--------C---CCCCCEEEEEe-------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            6789999998754333222211        0   11234567764       35666666677889999976664443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.84  E-value=1.3e-06  Score=77.96  Aligned_cols=214  Identities=11%  Similarity=0.014  Sum_probs=134.6

Q ss_pred             EEEEeC------CCCcEEEEecccCceeeEeeecCccE-----------------------------------------E
Q 017194           30 FVASSG------EDGCICWFDLRSKDVQLVTDVGNGPV-----------------------------------------T   62 (375)
Q Consensus        30 ~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~~v-----------------------------------------~   62 (375)
                      .++.++      .++.|.-+|..+|+.+.........+                                         .
T Consensus       170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~  249 (582)
T 1flg_A          170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ  249 (582)
T ss_dssp             EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred             EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence            555554      37899999999999876543211000                                         1


Q ss_pred             EEEEeCCCCeEEEEcC--------------------C----CeEEEEECCCCCcccccccccCCC--------cceeEEE
Q 017194           63 SLCFKSGNEDIIYVSS--------------------G----KEVKSFDVHMPASWRPLESYNYNK--------EEINQIV  110 (375)
Q Consensus        63 ~l~~~~~~~~l~~~~~--------------------d----~~i~iwd~~~~~~~~~~~~~~~~~--------~~v~~~~  110 (375)
                      .+++.|+...++.+..                    |    +.|..+|.++++..-..+.. .|.        .++. +.
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~-~~d~wd~~~~~~p~l-~~  327 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT-PNDAWDFSGNNELVL-FD  327 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS-TTCCSCCCCCCCCEE-EE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC-CCCcccccCCCCcEE-Ee
Confidence            2456666666666552                    2    58999999988765443321 111        1221 12


Q ss_pred             Ec-CCCC---eEEEEeCCCcEEEEeCcCceeeeeEecCcc-------------cc-------------------------
Q 017194          111 CN-PKSS---FLACADDGGDVKIIDIRQHCLYKSLRAGHS-------------SI-------------------------  148 (375)
Q Consensus       111 ~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~-------------------------  148 (375)
                      .. .+++   .++.++.+|.++++|.++++.+..+. ...             .+                         
T Consensus       328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~-~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P  406 (582)
T 1flg_A          328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP-FVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP  406 (582)
T ss_dssp             EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE-SSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred             eecCCCCEEEEEEEECCCceEEEEECCCCCEecccc-cccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence            21 4564   68889999999999999998877665 221             00                         


Q ss_pred             -------eeEEEEeeCCCcEEEEee---------------------------------cCCeEEEeeCCCCCcceEEecC
Q 017194          149 -------CSSVQFIPWKPWEVISGG---------------------------------LDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       149 -------v~~~~~~~~~~~~l~~~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                             -..++++|+.. ++++..                                 .+|.|..||+.+++.+.+....
T Consensus       407 ~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~  485 (582)
T 1flg_A          407 PFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             CTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES
T ss_pred             CCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC
Confidence                   01345666655 333322                                 2578999999999988887644


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                                    .....-.+..      .+.++++++.||.++.||.++++...+...........+.+..+|++..
T Consensus       486 --------------~~~~~g~~~t------agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          486 --------------LPLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             --------------SCCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             --------------CCCcccceEe------CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence                          1111111111      3678888999999999999999988877665444444456667776543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.84  E-value=3.3e-05  Score=65.56  Aligned_cols=188  Identities=9%  Similarity=-0.023  Sum_probs=115.3

Q ss_pred             EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcc-cccccccCCCccee
Q 017194           30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASW-RPLESYNYNKEEIN  107 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~  107 (375)
                      +|+.+. ...|+..++........+. ....+..++|.+.+..|+.+ ...+.|+.+++...... ..............
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 3578988988665444443 45678899999866655554 45678999988742110 11111111234567


Q ss_pred             EEEEcCCCCeE-EEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec-CCeEEEeeCCCCCcceEE
Q 017194          108 QIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       108 ~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~  185 (375)
                      .+++.+.+..| ++-...+.|.+.+++.......+. ........|++.|.+.+++++-.. .+.|...++.. .....+
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-~~~~~~  240 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL  240 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-CSCEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-CccEEE
Confidence            88998854444 454567889999987554444444 344567899999977644555423 47888888864 333333


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                      ...            .-...+.|++++      ++..|+.+. ..+.|..+|+..
T Consensus       241 ~~~------------~l~~P~glavd~------~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          241 VTE------------NIQWPNGITLDL------LSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             ECS------------SCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred             EEC------------CCCceEEEEEEe------CCCEEEEEECCCCEEEEEeCCC
Confidence            211            124678999997      466666654 567899999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.82  E-value=4.6e-07  Score=83.72  Aligned_cols=156  Identities=13%  Similarity=0.062  Sum_probs=95.6

Q ss_pred             ceeEEEEe-cCCCCEEEEeC-CC----CcEEEEecccC-ceee-EeeecCccEEEEEEeCCCCeEEEEcCC-----CeEE
Q 017194           17 TATCCIAS-RDRPGFVASSG-ED----GCICWFDLRSK-DVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVK   83 (375)
Q Consensus        17 ~i~~~~~~-~~~~~~l~s~~-~d----~~i~iw~~~~~-~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~d-----~~i~   83 (375)
                      .+...+|| || |++||-+. .+    .+|+++|+.++ +.+. .+..   ....+.|+||++.|+....+     ..|+
T Consensus       175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            57788999 99 78777432 22    35999999988 6322 1221   23468899999988887765     3688


Q ss_pred             EEECCCCCccc-ccccccCCCcceeEEEEcCCCCeEEEEeC---CCcEEEEeCcCce-ee--eeEecCcccceeEEEEee
Q 017194           84 SFDVHMPASWR-PLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHC-LY--KSLRAGHSSICSSVQFIP  156 (375)
Q Consensus        84 iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~v~~~~~~~  156 (375)
                      ++++.++.... .+... ........+.|+||+++|+..+.   ...|+++|+.++. ..  ..+.........++.|+.
T Consensus       251 ~~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EEETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EEECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            88887654221 11111 11234567899999999887653   3468889987652 12  333213344445555543


Q ss_pred             CCCcEEEEeecC----CeEEEeeCCC
Q 017194          157 WKPWEVISGGLD----SKLVMWDFSK  178 (375)
Q Consensus       157 ~~~~~l~~~~~d----~~i~~wd~~~  178 (375)
                       ++.+++....+    ..|..+|+.+
T Consensus       330 -g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          330 -TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             -TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             -CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence             55345554443    3677777764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=9.2e-05  Score=69.00  Aligned_cols=328  Identities=10%  Similarity=0.028  Sum_probs=175.8

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-------ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      ..|.++...++ +.+. .|..++-|..||..+++......       .....|.++...+++...+ ++.+ -+.+||..
T Consensus       163 ~~i~~i~~d~~-g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~  238 (781)
T 3v9f_A          163 EQTWTATEAED-GKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNAN  238 (781)
T ss_dssp             CCEEEEEEEET-TEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETT
T ss_pred             cceEEEEECCC-CCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCC
Confidence            45788777776 5444 45555458889987765422111       1135688998888886554 4444 68999987


Q ss_pred             CCCcccccccc-----cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe-------------cCccccee
Q 017194           89 MPASWRPLESY-----NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR-------------AGHSSICS  150 (375)
Q Consensus        89 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~~v~  150 (375)
                      +++. ..+...     ......|.++...+++. |..|+..+-|.++|..+++......             ......|.
T Consensus       239 ~~~~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~  316 (781)
T 3v9f_A          239 TETF-TNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR  316 (781)
T ss_dssp             TTEE-EC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred             CCcE-EEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence            5432 222111     11245688998888774 5566665668899987654321100             01245788


Q ss_pred             EEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          151 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      ++...++|.  |..|+.++-|..++...... ..+... +..  ..........|.++...+      ++ .|.+|+.++
T Consensus       317 ~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~-~~~~~~-~~~--~~~~~l~~~~v~~i~~d~------~g-~lWigt~~~  383 (781)
T 3v9f_A          317 YIFQDSFNN--IWIGTWGGGINFISNAPPTF-HTWSYS-PTQ--MNESSLSNKVVSSVCDDG------QG-KLWIGTDGG  383 (781)
T ss_dssp             EEEECSSCC--EEEEEBSSCEEEECSSCCSC-EEEC-----C--CCSSCCSSSCEEEEEECT------TS-CEEEEEBSS
T ss_pred             EEEEeCCCC--EEEEecCCeEEEeCCCCCcc-eeeccC-ccc--cccCCCCCcceEEEEEcC------CC-CEEEEeCCC
Confidence            998888875  77888778899999775543 233211 000  000111235688888865      44 466677667


Q ss_pred             cEEEEeCCCcceeeccc--ccCCCCCCceeecccccceeee--eeeecCCc--ceeEeeeeecCCCccEEEEEEeecCCC
Q 017194          231 VVDVINIESELNISRSK--STTKPLKGSQSTSKVNIRDAEM--EILDQSGG--KRLHLDYSVGGHTAAASCVAFSMFGER  304 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~  304 (375)
                      -|..||..+........  ......+.++...++|...+..  +.....+.  ...+...........|.++...   ++
T Consensus       384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d---~~  460 (781)
T 3v9f_A          384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED---KN  460 (781)
T ss_dssp             CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC---TT
T ss_pred             cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC---CC
Confidence            79999987653322111  1112334445555566554431  22222111  1122111101234678888887   77


Q ss_pred             CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          305 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       305 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |.+.+.. . +-|..||..+.+......    ..........|.+++..+ +|.+.+....+| |..|+
T Consensus       461 g~lwigt-~-~Gl~~~~~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~-~g~lWigt~~~G-l~~~~  521 (781)
T 3v9f_A          461 KKIWIGT-H-AGVFVIDLASKKVIHHYD----TSNSQLLENFVRSIAQDS-EGRFWIGTFGGG-VGIYT  521 (781)
T ss_dssp             SEEEEEE-T-TEEEEEESSSSSCCEEEC----TTTSSCSCSCEEEEEECT-TCCEEEEESSSC-EEEEC
T ss_pred             CCEEEEE-C-CceEEEeCCCCeEEeccc----CcccccccceeEEEEEcC-CCCEEEEEcCCC-EEEEe
Confidence            7655544 4 458899987753211000    000001135688888777 666544433344 55554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.81  E-value=8.4e-06  Score=69.94  Aligned_cols=156  Identities=11%  Similarity=0.078  Sum_probs=94.2

Q ss_pred             ceeEEEEecC-CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC-----eEEEEECCCC
Q 017194           17 TATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMP   90 (375)
Q Consensus        17 ~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-----~i~iwd~~~~   90 (375)
                      ....++|.|+ +...|..+...+.|+.++..++...... ........++++++|+ |+.+...+     .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            3567899984 1334444443388999998877654433 3455688999999999 44444321     2333332211


Q ss_pred             CcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeE-ecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           91 ASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        91 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                        ......+. .......++++| ++.++++-..++.|+.+|..++.....+ ..+.......++|+|++++++++-...
T Consensus       218 --~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          218 --FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             --TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             --eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence              11000111 123456788999 5655555556788999998877652222 212222335799999998556666677


Q ss_pred             CeEEEeeCC
Q 017194          169 SKLVMWDFS  177 (375)
Q Consensus       169 ~~i~~wd~~  177 (375)
                      +.|+.+++.
T Consensus       295 ~~I~~~~~d  303 (433)
T 4hw6_A          295 HCIYRVDYN  303 (433)
T ss_dssp             TEEEEEEBC
T ss_pred             CEEEEEeCC
Confidence            899998865

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.80  E-value=5e-06  Score=71.34  Aligned_cols=261  Identities=8%  Similarity=0.022  Sum_probs=142.1

Q ss_pred             cEEEEEEeCC--CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC-----cEEEEeC
Q 017194           60 PVTSLCFKSG--NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDI  132 (375)
Q Consensus        60 ~v~~l~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~  132 (375)
                      ....++|.|+  ...|+.+...+.|+.+|..++.......    .......++++++++ |+++...+     .+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence            4568899984  3445555444899999987654322222    245688999999999 55544321     2333333


Q ss_pred             cCcee-eeeEecCcccceeEEEEee-CCCcEEEEeecCCeEEEeeCCCCCcceEE-ecCCCCCCCCCCcccCCCceeEEe
Q 017194          133 RQHCL-YKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKIV-NFGLPENNGNAGQCYNPAFVHAIA  209 (375)
Q Consensus       133 ~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~  209 (375)
                      ..+.. ...+.  .......++++| ++. ++++-..++.|+.+|..++.....+ ...            .......++
T Consensus       215 ~~~~~~~~~~~--~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~------------~~~~~~~ia  279 (433)
T 4hw6_A          215 ASGFTERLSLC--NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMD------------TKGSNFHIV  279 (433)
T ss_dssp             GGTTCCEEEEE--ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECS------------CCSSCEEEE
T ss_pred             CCCeecccccc--ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccC------------CCCCcccEE
Confidence            22211 11222  233457789999 554 5666667789999998877652332 222            112234699


Q ss_pred             ecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceee----cccccCCCCCCceeecccccceeeeeeeecCCcceeEeee
Q 017194          210 IPDADMLDKTNKICVVA-KGDGVVDVINIESELNIS----RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY  284 (375)
Q Consensus       210 ~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~  284 (375)
                      ++|      +++.|+++ ...+.|+.++........    .........    . ..+|.                    
T Consensus       280 ~dp------dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~----g-~~dg~--------------------  328 (433)
T 4hw6_A          280 WHP------TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP----G-WVDGM--------------------  328 (433)
T ss_dssp             ECT------TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC----C-CBCEE--------------------
T ss_pred             EeC------CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC----c-cCCCc--------------------
Confidence            998      78855555 456789998865311000    000000000    0 00000                    


Q ss_pred             eecCCCccEEEEEE---------eecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhh--hh------hhhcccccce
Q 017194          285 SVGGHTAAASCVAF---------SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND--LL------IKNINLNKKV  347 (375)
Q Consensus       285 ~~~~~~~~v~~~~~---------s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~------~~~~~~~~~v  347 (375)
                      .....-.....+++         .   ++|.++++-...+.|+.++. ++..........  ..      ......-...
T Consensus       329 ~~~a~~~~P~giav~~n~~y~~dd---~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P  404 (433)
T 4hw6_A          329 GTGARLWGPNQGIFVKNEAYAGEE---DEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHP  404 (433)
T ss_dssp             GGGSBCSSEEEEEEEECGGGTTSS---CCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSE
T ss_pred             ccceEEcCCccEEEEccccccccC---CCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCC
Confidence            00111234567888         6   67777777777888999985 332211100000  00      0000112346


Q ss_pred             eeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          348 NWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       348 ~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ..+++.|.++.++++=...++|+..+++
T Consensus       405 ~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          405 TSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            7899995477766666677899988764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=3.9e-06  Score=72.03  Aligned_cols=155  Identities=8%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             cEEEEEEeC-CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-C----cEEEEeCc
Q 017194           60 PVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-G----DVKIIDIR  133 (375)
Q Consensus        60 ~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~iwd~~  133 (375)
                      ....|+++| ++..|+.+...+.|+.+|+..+.......    .......++|++++++|+++... +    .+.+++. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            456889998 45556666555889999988643222221    24567899999999966666542 2    2444443 


Q ss_pred             Cceee--eeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeec
Q 017194          134 QHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP  211 (375)
Q Consensus       134 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (375)
                      .+...  ..+.  .......++++|++.+++++-..++.|..++...+.........            .......++++
T Consensus       213 ~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~------------~~~~P~gia~~  278 (430)
T 3tc9_A          213 ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ------------DSGWEFHIQFH  278 (430)
T ss_dssp             GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS------------SSSCCEEEEEC
T ss_pred             CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC------------CCCcceeEEEc
Confidence            33222  2332  22346788999943336667667889999998865542333322            12356789999


Q ss_pred             CCccccCCCCEEEEE-ecCCcEEEEeCCC
Q 017194          212 DADMLDKTNKICVVA-KGDGVVDVINIES  239 (375)
Q Consensus       212 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  239 (375)
                      |      ++++|+++ ...+.|..++...
T Consensus       279 p------dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          279 P------SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             T------TSSEEEEEETTTTEEEEEEEET
T ss_pred             C------CCCEEEEEECCCCEEEEEeCCc
Confidence            9      78855554 4677899987653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=1.1e-05  Score=69.25  Aligned_cols=155  Identities=14%  Similarity=0.104  Sum_probs=99.0

Q ss_pred             ceeEEEEec-CCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC-C----eEEEEECCCC
Q 017194           17 TATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-K----EVKSFDVHMP   90 (375)
Q Consensus        17 ~i~~~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-~----~i~iwd~~~~   90 (375)
                      ....|+++| +++ .|..+...+.|+.+|+..+.... +.........++|++++++|+.+... +    .+...+.. +
T Consensus       138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S  214 (430)
T ss_dssp             CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred             CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence            356789998 434 44444444789999988765433 33345668899999999966666542 1    34444433 2


Q ss_pred             Ccc--cccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           91 ASW--RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        91 ~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      ...  ..+..    ......++++| ++.++++-..++.|..++...+........+.......++|+|++++++++-..
T Consensus       215 ~~~~~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          215 GFKVITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             TSCSEEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             ceeeeeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            211  11221    23467788999 666555655778999999886654333331222457899999999855666667


Q ss_pred             CCeEEEeeCCC
Q 017194          168 DSKLVMWDFSK  178 (375)
Q Consensus       168 d~~i~~wd~~~  178 (375)
                      .+.|..++...
T Consensus       291 ~~~I~~~~~d~  301 (430)
T 3tc9_A          291 QHYILRSDYDW  301 (430)
T ss_dssp             TTEEEEEEEET
T ss_pred             CCEEEEEeCCc
Confidence            88999988753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.80  E-value=2.4e-06  Score=76.14  Aligned_cols=210  Identities=9%  Similarity=0.046  Sum_probs=131.7

Q ss_pred             CCCcEEEEecccCceeeEeeecCcc-------------------------------------E-EEEEEeCCCCeEEEEc
Q 017194           36 EDGCICWFDLRSKDVQLVTDVGNGP-------------------------------------V-TSLCFKSGNEDIIYVS   77 (375)
Q Consensus        36 ~d~~i~iw~~~~~~~~~~~~~~~~~-------------------------------------v-~~l~~~~~~~~l~~~~   77 (375)
                      .+|.|+.+|.++|+.+..+......                                     + ..+++.++...++.+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3789999999999987766532111                                     0 1345566677777776


Q ss_pred             CC----------------CeEEEEECCCCCccccccccc-------CCCcceeEEEEc-CCC---CeEEEEeCCCcEEEE
Q 017194           78 SG----------------KEVKSFDVHMPASWRPLESYN-------YNKEEINQIVCN-PKS---SFLACADDGGDVKII  130 (375)
Q Consensus        78 ~d----------------~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~-~~~---~~l~~~~~dg~i~iw  130 (375)
                      .+                +.|..+|.++++..-..+...       ....++. +... .++   +.++.++.+|.++++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence            54                389999999887654433221       0111221 2222 466   467778899999999


Q ss_pred             eCcCceeeeeEecCc-----------c-cce--------------------------eEEEEeeCCCcEEEEe-------
Q 017194          131 DIRQHCLYKSLRAGH-----------S-SIC--------------------------SSVQFIPWKPWEVISG-------  165 (375)
Q Consensus       131 d~~~~~~~~~~~~~~-----------~-~~v--------------------------~~~~~~~~~~~~l~~~-------  165 (375)
                      |.++++.+.......           . .++                          ..++++|+.. ++++.       
T Consensus       339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~  417 (599)
T 1w6s_A          339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE-LFFMGINHICMD  417 (599)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEE
T ss_pred             ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCC-EEEEecccccee
Confidence            999998876654111           0 011                          2356666655 33332       


Q ss_pred             --------------------------e------cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          166 --------------------------G------LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       166 --------------------------~------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                                                +      ..|.|..||+.+++.+.+.....            +..-..+..   
T Consensus       418 ~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~------------~~~~g~~~t---  482 (599)
T 1w6s_A          418 WEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF------------AVWGGTMAT---  482 (599)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS------------CCCSBCEEE---
T ss_pred             eecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC------------CccCcceEe---
Confidence                                      1      34789999999999888776431            110011221   


Q ss_pred             ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                           .+.+++.++.||.|+.||.++++.+.+...........+.+..+|++.+
T Consensus       483 -----agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          483 -----AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             -----TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             -----cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence                 4778888999999999999999988877655444444455667776443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.75  E-value=2.4e-05  Score=61.27  Aligned_cols=171  Identities=6%  Similarity=0.101  Sum_probs=105.8

Q ss_pred             eeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194           54 TDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI  132 (375)
Q Consensus        54 ~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  132 (375)
                      +.+-...+..++|.|++..|++ ...++.|...|.. ++..+.+.. .+ ......+++.+++.++++.-.++.+.++++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DF-VKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            3344567999999998776665 5557788888987 554444322 21 256778889888877666656788999887


Q ss_pred             cCcee---eeeEec-----CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC---CCCcceEEecCCCCCCCCCCcccC
Q 017194          133 RQHCL---YKSLRA-----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS---KGRPNKIVNFGLPENNGNAGQCYN  201 (375)
Q Consensus       133 ~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~  201 (375)
                      .....   +.....     ..+.....++|.|.++ .|.++.+.....+|.++   ....+..+...  ..    .....
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~--~~----~~~~~  171 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDK--AL----QRQFT  171 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECH--HH----HHTCC
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecch--hh----ccccc
Confidence            64432   222210     2344568999999987 45555554444454443   11122222110  00    00001


Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ...+.++++.|.     .+.+++.....+.|..+|...
T Consensus       172 ~~d~S~l~~dp~-----tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          172 LDDVSGAEFNQQ-----KNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             SSCCCEEEEETT-----TTEEEEEETTTTEEEEECTTC
T ss_pred             cCCceeEEEcCC-----CCeEEEEECCCCeEEEEcCCC
Confidence            235689999996     677888888888999999875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.73  E-value=7.9e-05  Score=68.61  Aligned_cols=188  Identities=9%  Similarity=-0.031  Sum_probs=113.7

Q ss_pred             EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCcc-cccccccCCCccee
Q 017194           30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASW-RPLESYNYNKEEIN  107 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~  107 (375)
                      +|+.+.. ..|+..++...+....+. ....+..|+|.+....|+ +-...+.|+.+++...... .....+........
T Consensus       397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEECB-SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccccc-cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            4443333 468888887665444333 456678999998555554 4455678999998742110 11111111234567


Q ss_pred             EEEEcCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC-CeEEEeeCCCCCcceEE
Q 017194          108 QIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-SKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       108 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~  185 (375)
                      .|++.+.++.|+.+ ...+.|.+.++........+. ........|++.|.+.+++++-... +.|...++.. .....+
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~l  552 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL  552 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEE
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEE
Confidence            89998877555544 467889999987554433333 3445689999999866455554333 7899998864 444443


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                      ...            .-.....|++.+      .+..|+.+. ..+.|..+++..
T Consensus       553 v~~------------~l~~P~GLavD~------~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          553 VTE------------NIQWPNGITLDL------LSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             ECS------------SCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred             EeC------------CCCCceEEEEec------CCCeEEEEeCCCCcEEEEecCC
Confidence            322            124678999987      455555554 556788888864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.70  E-value=7e-05  Score=61.36  Aligned_cols=181  Identities=8%  Similarity=0.005  Sum_probs=109.7

Q ss_pred             CCcEEEEecccCce-eeEeeecCccEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194           37 DGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        37 d~~i~iw~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      ...|+..++..... ...+-..-....+++|.+.+..|+ +-...+.|..+++........+..  ..-.....+++.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcC
Confidence            35799999886642 222222234567899998655554 445568899999875432111111  11235667889875


Q ss_pred             CCeE-EEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee-cCCeEEEeeCCCCCcceEEecCCCCC
Q 017194          115 SSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPEN  192 (375)
Q Consensus       115 ~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~  192 (375)
                      +..| ++-...+.|.+++++.......+. ........+++.|.+..++++-. ..+.|...++. +.....+...    
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~----  163 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINS----  163 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECS----
T ss_pred             CCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEEC----
Confidence            5444 444567789999986543322232 33456789999997664444432 35788888876 3333333211    


Q ss_pred             CCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                              .-...+.|+++|      ++..|+.+. ..+.|..+|+..
T Consensus       164 --------~l~~Pnglavd~------~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          164 --------EIYWPNGLTLDY------EEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             --------SCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred             --------CCCCccEEEEec------cCCEEEEEECCCCEEEEEcCCC
Confidence                    124568999998      456555554 567899998874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.70  E-value=7.4e-05  Score=61.21  Aligned_cols=204  Identities=9%  Similarity=-0.066  Sum_probs=129.4

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-eEeeecCccEEEEEEeCCCCe-EEEEcCCCeEEEEECCCCCccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVTDVGNGPVTSLCFKSGNED-IIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      ....++|.+.++.++.+-...+.|..+++..+... ..+...-.....+++.+.+.. .++-...+.|.++++.... ..
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~  114 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RK  114 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EE
Confidence            46678999874666666667788999998766432 223333345678899875444 4455556899999987432 22


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      .+.  .........+++.|.+..|+.+..  .+.|...+++.. ....+....-...+.|+++|++..++++=+..+.|.
T Consensus       115 ~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          115 VLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             EEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            221  112345688999987667666653  578888887533 333332022345689999997775566666778999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      .+|+.. .....+...            .......+++..       +.++.+-...+.|..++..+++...
T Consensus       192 ~~d~dG-~~~~~~~~~------------~~~~P~glav~~-------~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          192 KSNLDG-TNRQAVVKG------------SLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             EEETTS-CSCEEEECS------------CCSCEEEEEEET-------TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEcCCC-CceEEEecC------------CCCCceEEEEeC-------CEEEEEecCCCeEEEEECCCCCceE
Confidence            999874 333333311            123456777753       5566666677899999987765443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.69  E-value=2.3e-06  Score=77.91  Aligned_cols=201  Identities=10%  Similarity=0.009  Sum_probs=110.8

Q ss_pred             eeEEEEecCCCCEEEEeCC-CCcEEEEecccCceeeEeeecC-ccEEEEEEeCCCCeEEEEc-CC-----CeEEEEECCC
Q 017194           18 ATCCIASRDRPGFVASSGE-DGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVS-SG-----KEVKSFDVHM   89 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~-~d-----~~i~iwd~~~   89 (375)
                      ..++++.++ +++++.|+. +..+.+||..+++-...-..+. ..-.+++..++++.++.|+ .+     ..+.+||..+
T Consensus       245 ~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          245 CPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccccCCCC-CCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            344677777 789999884 4589999988765432222121 1223455667899888888 34     5799999986


Q ss_pred             CCcccccccc---cCCCcceeEEEEcCCCCeEEEEeCCC---------cEEEEeCcCceeeeeEecCccc---------c
Q 017194           90 PASWRPLESY---NYNKEEINQIVCNPKSSFLACADDGG---------DVKIIDIRQHCLYKSLRAGHSS---------I  148 (375)
Q Consensus        90 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~---------~  148 (375)
                      ++ +..+...   ...... ....+..++..++.|+.+|         .+..||..+..-..... .+..         .
T Consensus       324 ~~-W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~-~~~~~~~~~~~~~~  400 (656)
T 1k3i_A          324 KT-WTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG-KRQSNRGVAPDAMC  400 (656)
T ss_dssp             TE-EEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE-ECEETTEECCCCBT
T ss_pred             Cc-ceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC-ccccccccCCCCCC
Confidence            53 3332110   000000 0112234555555555443         56788887665333222 1111         2


Q ss_pred             eeEEEEeeCCCcEEEEeecCC-----------eEEEeeCCCCCcceEE--ecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          149 CSSVQFIPWKPWEVISGGLDS-----------KLVMWDFSKGRPNKIV--NFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      -.++.|...+..+++.|+.++           .+.+||..+.+.....  ...            .+..-.+..+.|   
T Consensus       401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp------------~~R~~~~~~~l~---  465 (656)
T 1k3i_A          401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY------------FARTFHTSVVLP---  465 (656)
T ss_dssp             CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS------------SCCBSCEEEECT---
T ss_pred             CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC------------CCcccCCeEECC---
Confidence            244444443333788887543           6778887765543322  111            112223445555   


Q ss_pred             ccCCCCEEEEEecC-----------CcEEEEeCCCc
Q 017194          216 LDKTNKICVVAKGD-----------GVVDVINIESE  240 (375)
Q Consensus       216 ~~~~~~~l~~~~~d-----------g~i~i~d~~~~  240 (375)
                         ++++++.|+.+           ..+.+||..+.
T Consensus       466 ---~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          466 ---DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             ---TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             ---CCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence               78999998754           45788887653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=0.00013  Score=62.94  Aligned_cols=156  Identities=12%  Similarity=0.102  Sum_probs=98.2

Q ss_pred             eeEEEEec-CCCCEEEEeCCCCcEEEEecccCceeeEeeec---CccEEEEEE-------eCCCCeEEEEcCCC------
Q 017194           18 ATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCF-------KSGNEDIIYVSSGK------   80 (375)
Q Consensus        18 i~~~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~l~~-------~~~~~~l~~~~~d~------   80 (375)
                      -..|+|.| +.++++++....+.|++.|++++.....+...   ......++|       ++++++|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56789998 33455555554567999998877654444321   235889999       99999777666543      


Q ss_pred             -eEEEEECCC-CCcc-----cccccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCc-------Ccee--------
Q 017194           81 -EVKSFDVHM-PASW-----RPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIR-------QHCL--------  137 (375)
Q Consensus        81 -~i~iwd~~~-~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~-------~~~~--------  137 (375)
                       .|.+.+... +...     ..+..+    .....++++|++.. +++-..++.|..+|+.       ++..        
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence             366666443 1111     122222    24567889995545 5555577889999997       4543        


Q ss_pred             ---eee-EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194          138 ---YKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS  177 (375)
Q Consensus       138 ---~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~  177 (375)
                         ... +..+.......|+|+|+++.++++-+....|+.++..
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence               112 2212234568999999998445555677889986654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=0.00024  Score=65.53  Aligned_cols=210  Identities=12%  Similarity=0.028  Sum_probs=128.2

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC----ceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVH   88 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~   88 (375)
                      ....+..++|.+.++.++++-...+.|+.+++...    .....+...-.....|++.+.++.|+. -...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            34557789999864566666667788998888753    223333323456678999887755554 4556899999987


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ... ...+..  ........|++.|.+.+|+....  .+.|...++........+. ..-...+.|++.+.+..++++=.
T Consensus       502 G~~-~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~~~LYwaD~  577 (791)
T 3m0c_C          502 GVK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDS  577 (791)
T ss_dssp             SSS-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCe-EEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCCCeEEEEeC
Confidence            433 222211  11345789999998667666653  2678888886444333333 33457899999987774555555


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      ....|..+++........+...        .   .-....+|++..       +.++++-...+.|...|..++.....
T Consensus       578 ~~~~I~~~d~dG~~~~~v~~~~--------~---~l~~P~glav~~-------~~lYwtD~~~~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          578 KLHSISSIDVNGGNRKTILEDE--------K---RLAHPFSLAVFE-------DKVFWTDIINEAIFSANRLTGSDVNL  638 (791)
T ss_dssp             TTTEEEEEETTSCSCEEEEECT--------T---TTSSEEEEEEET-------TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             CCCcEEEEecCCCceEEEecCC--------C---ccCCCCEEEEeC-------CEEEEEECCCCEEEEEeCCCCcceEE
Confidence            6778999998744433333211        0   012345666642       44555555667888888776654433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.57  E-value=5.7e-05  Score=61.48  Aligned_cols=188  Identities=6%  Similarity=0.095  Sum_probs=119.4

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC----CCe--EE-EEcC---CCeEEEEECC--CCCccccc
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG----NED--II-YVSS---GKEVKSFDVH--MPASWRPL   96 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~--l~-~~~~---d~~i~iwd~~--~~~~~~~~   96 (375)
                      .+++.....+-+.+||+ +|+.++.+..  +.++.+..-|+    |+.  ++ +...   +++|.+|++.  ++ .+..+
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i  116 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSM  116 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEEC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeec
Confidence            45555556678999999 7888888763  56777777662    222  33 3333   4789999774  32 23333


Q ss_pred             ccc--c--CCCcceeEEEE--cCC-CC-eEEEEeCCCcEEEEeCc-------CceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           97 ESY--N--YNKEEINQIVC--NPK-SS-FLACADDGGDVKIIDIR-------QHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        97 ~~~--~--~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ...  .  .....+..+++  +|. ++ ++++...+|.+..|++.       +.+.+++|.  ..+.+..+...+... .
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g-~  193 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYG-R  193 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTT-E
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCC-e
Confidence            211  1  11155677787  774 44 57888889999999983       346678887  456788999998777 7


Q ss_pred             EEEeecCCeEEEeeCCC-----CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEe-cCCcEEE
Q 017194          162 VISGGLDSKLVMWDFSK-----GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAK-GDGVVDV  234 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~i  234 (375)
                      |+.+-++.-|..+|.+-     ++.+..+..+         .  -...+..|++.+    .++++ +|++++ .++...+
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g---------~--l~aDvEGLai~~----~~~g~gyLivSsQG~~s~~V  258 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR---------H--LTRDIEGLTIYY----AADGKGYLMASSQGNSSYAI  258 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSS---------S--BCSCEEEEEEEE----CGGGCEEEEEEEGGGTEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCC---------c--cccCcceEEEEe----cCCCCEEEEEEcCCCCEEEE
Confidence            89999887777777542     2222222111         0  113577787743    11344 566666 6779999


Q ss_pred             EeCC
Q 017194          235 INIE  238 (375)
Q Consensus       235 ~d~~  238 (375)
                      ||..
T Consensus       259 ydr~  262 (355)
T 3amr_A          259 YDRQ  262 (355)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9997

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.53  E-value=2.7e-06  Score=77.62  Aligned_cols=183  Identities=10%  Similarity=-0.006  Sum_probs=105.2

Q ss_pred             CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc-CCCeEEEEECCCCCc-ccccccccCCCcceeEEEEcCC
Q 017194           37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPK  114 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~  114 (375)
                      .+.|+..++.+.+....+.. ...+..++|.+.+..|+.+. ..+.|+.+++..... ......+.........+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35688888877665444433 34567899998776666554 457899999874100 0111111111234567888865


Q ss_pred             CCeE-EEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC-CeEEEeeCCCCCcceEEecCCCCC
Q 017194          115 SSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-SKLVMWDFSKGRPNKIVNFGLPEN  192 (375)
Q Consensus       115 ~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~~  192 (375)
                      +..| ++-...+.|.++++........+. ........|++.|.+.+++++-... +.|..+++... ....+...    
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~----  537 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE----  537 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCS----
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeC----
Confidence            4444 444466889999987554333333 2234568899999766455554333 67888877532 22222111    


Q ss_pred             CCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                              .-...+.|+++|.     .++++++-...+.|..+++..
T Consensus       538 --------~l~~PnGlavd~~-----~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          538 --------NIQWPNGITLDLL-----SGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             --------SCSSCCCEEECTT-----TCCEEEEETTTTEEEEECSSS
T ss_pred             --------CCCCccEEEEecc-----CCEEEEEecCCCeEEEEccCC
Confidence                    1234578999873     344444445667899998864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.51  E-value=2.7e-06  Score=77.61  Aligned_cols=208  Identities=12%  Similarity=-0.023  Sum_probs=120.5

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEeccc----CceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeEEEEECCCCC
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~~~   91 (375)
                      .+..++|.+.++.++++-...+.|..+++..    ......+...-.....|++.+.+..| ++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            4567899987444444445567899999875    22222222222335568887544444 444456789999987432


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS  169 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  169 (375)
                      ....+..   .......+++.|.+.+|+.+..  .+.|.++++... ....+....-...+.|+++|++..++++-+..+
T Consensus       487 ~~~l~~~---~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~  562 (699)
T 1n7d_A          487 RKTLFRE---QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  562 (699)
T ss_dssp             EEEECCC---SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred             eEEEEeC---CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCC
Confidence            2211111   1234678899997666555543  267888877533 222232022345678999998775667767788


Q ss_pred             eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194          170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                      .|..+|+.. .....+...       ..   .......|++..       +.++++....+.|..++..+++....+
T Consensus       563 ~I~~~d~dG-~~~~~~~~~-------~~---~~~~P~glavd~-------~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          563 SISSIDVNG-GNRKTILED-------EK---RLAHPFSLAVFE-------DKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEEEECSSS-SCCEEECCC-------SS---SCSSCCCCEEET-------TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             eEEEEccCC-CceEEEEec-------CC---cCCCceEeEEEC-------CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence            999999874 333333211       00   012234455543       455555566789999998877655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.48  E-value=3e-05  Score=71.74  Aligned_cols=113  Identities=12%  Similarity=0.150  Sum_probs=74.0

Q ss_pred             ceeEEEEc-CCCCeEEEEeC-CC----cEEEEeCcCc-eeee-eEecCcccceeEEEEeeCCCcEEEEeecC-----CeE
Q 017194          105 EINQIVCN-PKSSFLACADD-GG----DVKIIDIRQH-CLYK-SLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKL  171 (375)
Q Consensus       105 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i  171 (375)
                      .+...+|+ |||++|+.+.. +|    .|+++|+.++ +.+. .+.    .....++|+|+++. |+....+     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~-l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTS-LFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTE-EEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCE-EEEEEECCCCCCCEE
Confidence            67789999 99998886543 23    4999999988 6432 122    12457899999984 4444443     368


Q ss_pred             EEeeCCCCCcc--eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---CCcEEEEeCCCc
Q 017194          172 VMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVINIESE  240 (375)
Q Consensus       172 ~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~  240 (375)
                      +.+++.+++..  ..+...            .......+.++|      ++++|+....   ...|.++|+.++
T Consensus       250 ~~~~lgt~~~~~~lv~~~~------------~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEH------------NPLFSAFMYKAA------DTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEETTSCGGGCEEEEECC------------CTTCEEEEEECT------TSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEECCCCchhcEEEEecC------------CCceEEEEEECC------CCCEEEEEecCCCCceEEEEECCCC
Confidence            88888776532  222211            123456788998      7998887663   346778888753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.48  E-value=0.00066  Score=61.05  Aligned_cols=202  Identities=9%  Similarity=-0.023  Sum_probs=118.5

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-eeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASW   93 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~   93 (375)
                      .....++|++.++.++++-...+.|..++++.... ...+...-.....+++.+.+..|+.+ ...+.|.+.++..... 
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-  118 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-  118 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-
Confidence            44678999987455555656678898888875532 22333223578899999865555544 5568999999875322 


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                      ..+..  ..-.....+++.|.+.+|+....  .+.|...++.......... ..-...+.|++.++++.++++-...+.|
T Consensus       119 ~~l~~--~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I  195 (619)
T 3s94_A          119 KVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFI  195 (619)
T ss_dssp             EEEEC--SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEe--CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence            22211  12345778999997666666653  4577777765433322232 3345678999999877455665667789


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      ..+|+..... ..+...            .......|++.+       +.++++-...+.|...|..+++
T Consensus       196 ~~~~~dG~~~-~~~~~~------------~~~~P~gi~~~~-------~~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          196 HKSNLDGTNR-QAVVKG------------SLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEESSSCCEE-C---------------------CCCEEESS-------SEEEEECTTTCSEEEEESSSCC
T ss_pred             EEecCCCCcc-EEEEeC------------CCCCceEEEEeC-------CEEEEecCCCCEEEEEECCCCc
Confidence            9999874332 222111            011224566643       3334443456788888877654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.46  E-value=9.2e-05  Score=59.74  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=108.5

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE-eee----c--CccEEEEEE---eCCCCeEEEEc----
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDV----G--NGPVTSLCF---KSGNEDIIYVS----   77 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~----~--~~~v~~l~~---~~~~~~l~~~~----   77 (375)
                      ....---.+++|.+.++.++++.-..++|..|+...+..... +..    .  ...+..|.|   .|+++++++..    
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            333344557899987566666666889999999876543322 221    1  124578999   58877766533    


Q ss_pred             ---------CCCeEEEEECC---CCCcccccc--ccc-------C-CCcceeEEEEcCCCCeEEEEeCC-CcEEEEeCcC
Q 017194           78 ---------SGKEVKSFDVH---MPASWRPLE--SYN-------Y-NKEEINQIVCNPKSSFLACADDG-GDVKIIDIRQ  134 (375)
Q Consensus        78 ---------~d~~i~iwd~~---~~~~~~~~~--~~~-------~-~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~  134 (375)
                               .+..|..+|+.   +++......  ...       + .......++..++|+..++++.. +.|...+...
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                     25789999998   665432221  110       0 11358899999999999988888 8888888754


Q ss_pred             ceeeeeEec-----CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          135 HCLYKSLRA-----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       135 ~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      . .+..+..     ......+.|+++|++. +|++....|.+..+|+++
T Consensus       169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          169 K-TVSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             C-CEEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSS
T ss_pred             C-EEeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCC
Confidence            3 3332220     1122367999999998 566665599999999884

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=0.00092  Score=57.67  Aligned_cols=158  Identities=15%  Similarity=0.163  Sum_probs=97.3

Q ss_pred             EEEEEEeCC-CCeEEEEcC-CCeEEEEECCCCCcccccccccCCCcceeEEEE-------cCCCCeEEEEeCCC------
Q 017194           61 VTSLCFKSG-NEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-------NPKSSFLACADDGG------  125 (375)
Q Consensus        61 v~~l~~~~~-~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg------  125 (375)
                      ...|+|.|. ...|+.+.. .+.|++.|++++........-.........++|       +++++.|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            568899983 444555543 467889998865433222221112345889999       99999777776544      


Q ss_pred             -cEEEEeCcC-ceee-----eeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-------CCCc----------
Q 017194          126 -DVKIIDIRQ-HCLY-----KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-------KGRP----------  181 (375)
Q Consensus       126 -~i~iwd~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-------~~~~----------  181 (375)
                       .|.+++... +...     ..+. . -.....++++|++..++++-..++.|..+|+.       ++..          
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             ceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence             266665433 2221     2222 1 12446788999666577777788999999987       5543          


Q ss_pred             -ceE-EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCC
Q 017194          182 -NKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIE  238 (375)
Q Consensus       182 -~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~  238 (375)
                       ... +..+            .......|+++|      +++.|+++ +....|+.++..
T Consensus       299 ~~~~l~~~~------------~~~~p~~ia~~p------~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          299 TFKQLFTIA------------DPSWEFQIFIHP------TGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEEECS------------SSSCCEEEEECT------TSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEecC------------CCCCceEEEEcC------CCCEEEEEeCCCCEEEEEecC
Confidence             112 2222            124567899999      78865555 456788886654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.32  E-value=0.00072  Score=54.95  Aligned_cols=186  Identities=11%  Similarity=0.121  Sum_probs=95.0

Q ss_pred             CCEEEEeC-CC-----CcEEEEecccCceeeE--eeecCccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCc--
Q 017194           28 PGFVASSG-ED-----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPAS--   92 (375)
Q Consensus        28 ~~~l~s~~-~d-----~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~--   92 (375)
                      +.+++.|+ .+     ..+.+||+.+.+-...  +....... +++ ..++..++.|+.+     ..+.+||+.+.+.  
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            46677777 33     3688899877653221  11111111 222 2356667777654     4689999887541  


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      +..+.........-..+.+  +++.++.|+.+     ..+.+||+.+.+-.  ..+. ..... .+++. -++. +++.|
T Consensus        93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~-~~~~-iyv~G  166 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ-TAREG-AGLVV-ASGV-IYCLG  166 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS-SCCBS-CEEEE-ETTE-EEEEC
T ss_pred             eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC-CCccc-ceEEE-ECCE-EEEEC
Confidence            3333333221112222222  56667776643     35889998766432  2222 11111 12222 2454 77777


Q ss_pred             ecC-----CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-----CcEEEE
Q 017194          166 GLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVI  235 (375)
Q Consensus       166 ~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~  235 (375)
                      +.+     ..+..||+.+.+-...-...            .+..-.++...       ++++++.|+.+     ..+.+|
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~v~~y  227 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNVTPMA------------TKRSGAGVALL-------NDHIYVVGGFDGTAHLSSVEAY  227 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEECCCS------------SCCBSCEEEEE-------TTEEEEECCBCSSSBCCCEEEE
T ss_pred             CCCCCcccceEEEEeCCCCcEEeCCCCC------------cccccceEEEE-------CCEEEEEeCCCCCcccceEEEE
Confidence            754     45888998876433221111            01111222222       47777777754     468888


Q ss_pred             eCCCc
Q 017194          236 NIESE  240 (375)
Q Consensus       236 d~~~~  240 (375)
                      |+.+.
T Consensus       228 d~~~~  232 (301)
T 2vpj_A          228 NIRTD  232 (301)
T ss_dssp             ETTTT
T ss_pred             eCCCC
Confidence            88763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.28  E-value=0.00033  Score=57.08  Aligned_cols=191  Identities=12%  Similarity=0.183  Sum_probs=115.5

Q ss_pred             CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC----CCe--E-EEEe-C--CCcEEEEeCc--Ccee
Q 017194           70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK----SSF--L-ACAD-D--GGDVKIIDIR--QHCL  137 (375)
Q Consensus        70 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~~~~-~--dg~i~iwd~~--~~~~  137 (375)
                      ...++.....+-+.+||+ +++.++.+.     .+.++.+..-|+    ++.  + ++.. .  +++|.+|++.  +++ 
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~-----~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYN-----TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEEC-----CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEcc-----CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-
Confidence            345666666789999999 565555443     245566555552    222  3 3333 3  5789999773  333 


Q ss_pred             eeeEec-----Ccc-cceeEEEE--eeC-CCcEEEEeecCCeEEEeeCC-------CCCcceEEecCCCCCCCCCCcccC
Q 017194          138 YKSLRA-----GHS-SICSSVQF--IPW-KPWEVISGGLDSKLVMWDFS-------KGRPNKIVNFGLPENNGNAGQCYN  201 (375)
Q Consensus       138 ~~~~~~-----~~~-~~v~~~~~--~~~-~~~~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~  201 (375)
                      +..+..     +.. ..+..+++  +|. +..++++...+|.+..|++.       +.+.++++..+             
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-------------  179 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-------------  179 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-------------
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-------------
Confidence            443320     011 56677888  664 44357778888999999983       33556677654             


Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeE
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH  281 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~  281 (375)
                       ..+..+.+.+      ....|+++-++.-|..|+.+...                                   ....+
T Consensus       180 -sq~EgcvvDd------~~g~Lyv~eEd~GIw~~da~p~~-----------------------------------~~~~~  217 (355)
T 3amr_A          180 -SQTEGMAADD------EYGRLYIAEEDEAIWKFSAEPDG-----------------------------------GSNGT  217 (355)
T ss_dssp             -SCEEEEEEET------TTTEEEEEETTTEEEEEECSTTS-----------------------------------CSCCE
T ss_pred             -CCcceEEEcC------CCCeEEEecccceEEEEeCCcCC-----------------------------------CCCce
Confidence             5778888877      68899999998777777755210                                   00112


Q ss_pred             eeeeec-CC-CccEEEEEEeecCCCCc-EEEEec-CCCeEEEEeCC
Q 017194          282 LDYSVG-GH-TAAASCVAFSMFGERGK-YLISGG-NDKLVKVWDCS  323 (375)
Q Consensus       282 ~~~~~~-~~-~~~v~~~~~s~~~~~~~-~l~s~~-~dg~i~iwd~~  323 (375)
                      .+..+. ++ ...+..|++-+. ++++ ||++++ .+++..+||..
T Consensus       218 ~v~~~~~g~l~aDvEGLai~~~-~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          218 VIDRADGRHLTRDIEGLTIYYA-ADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEBSSSSBCSCEEEEEEEEC-GGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEEecCCccccCcceEEEEec-CCCCEEEEEEcCCCCEEEEEECC
Confidence            222221 22 346788887421 4444 555554 67899999997

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.20  E-value=0.0014  Score=52.93  Aligned_cols=173  Identities=14%  Similarity=0.184  Sum_probs=107.2

Q ss_pred             ceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeee-EecC----c--ccceeEEEE---eeCCCcEEEEee-------
Q 017194          105 EINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKS-LRAG----H--SSICSSVQF---IPWKPWEVISGG-------  166 (375)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~~l~~~~-------  166 (375)
                      --.+++|.+....++.++ ..++|..||...+..... +. +    .  ...+..|.|   .|++. ++++..       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~   91 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNF   91 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccc
Confidence            445788988666666666 789999999975543322 22 1    1  124579999   58865 555433       


Q ss_pred             ------cCCeEEEeeCC---CCCcceEEecCCCCCC--CCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-CcEEE
Q 017194          167 ------LDSKLVMWDFS---KGRPNKIVNFGLPENN--GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-GVVDV  234 (375)
Q Consensus       167 ------~d~~i~~wd~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i  234 (375)
                            .+..|..||+.   +++.+....+......  .....  .......+++.+      +|+..++++.. +.|..
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~--~~~~~nDvavD~------~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGK--RPFGVVQSAQDR------DGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSS--CCEEEEEEEECT------TSCEEEEEEESSCEEEE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccc--cccCCceeEECC------CCCEEEeCCCCCCeEEE
Confidence                  26789999999   8888877764200000  00000  012477888887      79998888877 77766


Q ss_pred             EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194          235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND  314 (375)
Q Consensus       235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d  314 (375)
                      ++....                        .+..           +-............+.|++.   |+|+.|++...+
T Consensus       164 V~pdG~------------------------~~~~-----------~~~~~~~~~~~~G~nGIv~~---pdg~~Liv~~~~  205 (334)
T 2p9w_A          164 VSADGK------------------------TVST-----------FAWESGNGGQRPGYSGITFD---PHSNKLIAFGGP  205 (334)
T ss_dssp             ECTTSC------------------------CEEE-----------EEECCCCSSSCCSCSEEEEE---TTTTEEEEESSS
T ss_pred             EeCCCC------------------------EEee-----------eeecCCCcccccCcceEEEe---CCCCEEEEEcCC
Confidence            665532                        1100           00000011122346788999   999888887779


Q ss_pred             CeEEEEeCCCc
Q 017194          315 KLVKVWDCSRF  325 (375)
Q Consensus       315 g~i~iwd~~~~  325 (375)
                      |.|..+|+...
T Consensus       206 g~L~~fD~~~p  216 (334)
T 2p9w_A          206 RALTAFDVSKP  216 (334)
T ss_dssp             SSEEEEECSSS
T ss_pred             CeEEEEcCCCC
Confidence            99999998853

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.20  E-value=0.0017  Score=53.48  Aligned_cols=190  Identities=9%  Similarity=-0.007  Sum_probs=101.7

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee---ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD---VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      ...+.++.+.+  +..++. +.++.|.. ..+.|+.-..+.   .+...+..+.+.+++..++++. ++.|.. ..+.++
T Consensus        79 ~~~~~~i~~~~--~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG--NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGK  152 (327)
T ss_dssp             CCEEEEEEEET--TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTS
T ss_pred             CccEEEEEecC--CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCC
Confidence            34688898875  344444 45564433 333343322222   1234577888877776665554 554422 223344


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEE-EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI-IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      .+..+..  .....+..+.+.+++.+++++. +|.+.. .|- .++.-..+.......+..+.+.+++.  ++.++.+|.
T Consensus       153 tW~~~~~--~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~  226 (327)
T 2xbg_A          153 NWQALVQ--EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGK  226 (327)
T ss_dssp             SEEEEEC--SCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTE
T ss_pred             CCEEeec--CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC--EEEEeCCce
Confidence            4544432  2345788999999988777664 455444 332 12222222213456788899988875  455666788


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  232 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i  232 (375)
                      +++.+...++.-..+..+  +       ......+..+.+.+      ++.+++++. +|.|
T Consensus       227 ~~~s~~D~G~tW~~~~~~--~-------~~~~~~~~~v~~~~------~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSP--L-------RRNSVGFLDLAYRT------PNEVWLAGG-AGAL  272 (327)
T ss_dssp             EEEEETTEEEEECCCBCT--T-------SSCCSCEEEEEESS------SSCEEEEES-TTCE
T ss_pred             EEEecCCCCCeeEeccCC--c-------ccCCcceEEEEecC------CCEEEEEeC-CCeE
Confidence            877643323222111110  0       00123477888876      566666554 5655

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.16  E-value=0.0018  Score=52.65  Aligned_cols=185  Identities=14%  Similarity=0.180  Sum_probs=92.5

Q ss_pred             CCEEEEeCCC----CcEEEEecccCceeeE--eeecCccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCccccc
Q 017194           28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d----~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~   96 (375)
                      +.+++.|+.+    ..+..||+.+.+-...  +......- +++. -++..++.|+.+     ..+.+||..+.+ +..+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTE-EEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCc-eeeC
Confidence            3566666643    3588888877653221  11111111 2222 256666777654     368899988653 4444


Q ss_pred             ccccCCCcceeEEEEcCCCCeEEEEeCCC-----cEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEeecC-
Q 017194           97 ESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLD-  168 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-  168 (375)
                      .........-..+.+  +++.++.|+.++     .+.+||+.+.+-.  ..+. ..... .+++. -++. +++.|+.+ 
T Consensus        93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~-~~~~-iyv~GG~~~  166 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN-TRRSS-VGVGV-VGGL-LYAVGGYDV  166 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS-SCCBS-CEEEE-ETTE-EEEECCEET
T ss_pred             CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC-CcccC-ceEEE-ECCE-EEEEeCCCC
Confidence            333221111222222  566777776543     5788888765432  2222 11111 12222 2444 67776643 


Q ss_pred             ------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-----CcEEEEeC
Q 017194          169 ------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINI  237 (375)
Q Consensus       169 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~  237 (375)
                            ..+.+||+.+.+-...-...            .+..-.+++..       ++++++.|+.+     ..+.+||+
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~  227 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIAEMS------------TRRSGAGVGVL-------NNLLYAVGGHDGPLVRKSVEVYDP  227 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEECCCS------------SCCBSCEEEEE-------TTEEEEECCBSSSSBCCCEEEEET
T ss_pred             CCCccccEEEEEeCCCCcEEECCCCc------------cccccccEEEE-------CCEEEEECCCCCCcccceEEEEeC
Confidence                  35888998766433221111            01111223332       47778887754     36788888


Q ss_pred             CCc
Q 017194          238 ESE  240 (375)
Q Consensus       238 ~~~  240 (375)
                      .+.
T Consensus       228 ~~~  230 (302)
T 2xn4_A          228 TTN  230 (302)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.15  E-value=0.0039  Score=56.13  Aligned_cols=185  Identities=10%  Similarity=0.063  Sum_probs=114.7

Q ss_pred             EEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcccccccccCCCccee
Q 017194           30 FVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEIN  107 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  107 (375)
                      +|+.+ ....|+..++++......+.. .-..+..|+|.+.+..|+.+ ..++.|..+++..... ..+...  ......
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~--g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEF--GLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS--SCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeC--CCCCcc
Confidence            44433 345799999987654333332 23467899999876665544 4568999999874322 222111  123567


Q ss_pred             EEEEcCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe-ecCCeEEEeeCCCCCcceEE
Q 017194          108 QIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG-GLDSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       108 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~  185 (375)
                      .+++.+.+..|+.+ ...+.|.+.++........+. ..-.....|++.|....++++- +..+.|...++.... ...+
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l  161 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL  161 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE
Confidence            88998765555444 456789999986543322232 3345678999999665445543 235788888876443 3333


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                      ...             -.....|++++      +++.|+.+. ..+.|..+|+..
T Consensus       162 ~~~-------------~~~P~GlalD~------~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          162 VPN-------------VGRANGLTIDY------AKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             ECS-------------CSSEEEEEEET------TTTEEEEEETTTTEEEEEETTS
T ss_pred             ECC-------------CCCcceEEEcc------ccCEEEEEECCCCEEEEEcCCC
Confidence            211             35678999988      566666554 567888888875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.12  E-value=0.0023  Score=52.12  Aligned_cols=184  Identities=11%  Similarity=0.074  Sum_probs=93.2

Q ss_pred             CEEEEeCC--CCcEEEEecccCceeeE--eeecCccEEEEEEeCCCCeEEEEcCC----CeEEEEECCCCCccccccccc
Q 017194           29 GFVASSGE--DGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMPASWRPLESYN  100 (375)
Q Consensus        29 ~~l~s~~~--d~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~  100 (375)
                      .+++.|+.  ...+.+||..+++-...  +.........+.  -++..++.|+.+    ..+.+||+.+.+ +..+....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS-WYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE-EEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe-EEECCCCC
Confidence            45566654  35688999887653221  211111222222  356666777654    678899988653 33333332


Q ss_pred             CCCcceeEEEEcCCCCeEEEEeCC------CcEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEeec-----
Q 017194          101 YNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGL-----  167 (375)
Q Consensus       101 ~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----  167 (375)
                      .....-..+.+  +++.++.|+.+      ..+.+||+.+.+-.  ..+. ..... .+++. -++. +++.|+.     
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~-~~~~-iyv~GG~~~~~~  163 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-TQRCS-HGMVE-ANGL-IYVCGGSLGNNV  163 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-SCCBS-CEEEE-ETTE-EEEECCEESCTT
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-CCcce-eEEEE-ECCE-EEEECCCCCCCC
Confidence            21111222222  56677777654      45889998876432  2222 11111 12222 2444 6677664     


Q ss_pred             ----CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-----CcEEEEeCC
Q 017194          168 ----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIE  238 (375)
Q Consensus       168 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  238 (375)
                          -..+.+||+.+.+-...-...            .+..-.++...       ++++++.|+.+     ..+.+||+.
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~~~~yd~~  224 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMI------------EARKNHGLVFV-------KDKIFAVGGQNGLGGLDNVEYYDIK  224 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCS------------SCCBSCEEEEE-------TTEEEEECCEETTEEBCCEEEEETT
T ss_pred             cccccceEEEeCCCCCeEEECCCcc------------chhhcceEEEE-------CCEEEEEeCCCCCCCCceEEEeeCC
Confidence                345889998876433221111            01111223332       46777777653     357888887


Q ss_pred             Cc
Q 017194          239 SE  240 (375)
Q Consensus       239 ~~  240 (375)
                      +.
T Consensus       225 ~~  226 (306)
T 3ii7_A          225 LN  226 (306)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.09  E-value=0.0053  Score=55.31  Aligned_cols=200  Identities=6%  Similarity=-0.049  Sum_probs=127.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~   94 (375)
                      ..+..++|.+.++.++++-..++.|..+++........+.........|++.+.+..|+. -...+.|.+.++..... .
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~  115 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-Q  115 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-E
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-E
Confidence            356789999985666667677889999998755443334333345778999876555544 44567899999874322 2


Q ss_pred             ccccccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           95 PLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      .+..  ..-.....+++.|....|+....  .+.|...++.... ...+. ..-.....|++.++++.++++-...+.|.
T Consensus       116 ~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          116 VLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             EEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEE-CCCCCcceEEEccccCEEEEEECCCCEEE
Confidence            2211  12345689999996666666652  5678888876443 33333 34456789999998775566666778999


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      .+|+..... ..+...             ......+++..       +.++++-...+.|...|..++.
T Consensus       192 ~~d~dG~~~-~v~~~~-------------l~~P~glav~~-------~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          192 SSNMLGLNR-EVIADD-------------LPHPFGLTQYQ-------DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEETTSCSC-EEEEEC-------------CSCEEEEEEET-------TEEEEEETTTTEEEEEETTTCC
T ss_pred             EEcCCCCce-EEeecc-------------CCCceEEEEEC-------CEEEEecCCCCEEEEEECCCCC
Confidence            999875443 333211             23445777753       4444444456788888866543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.07  E-value=0.0059  Score=54.94  Aligned_cols=164  Identities=5%  Similarity=-0.087  Sum_probs=101.4

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC--CCeEEEEECCCCCcc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASW   93 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~   93 (375)
                      .....+++.+.+++++++-...+.|.+.+++.......+...-.....|++.|.+..|+.+..  .+.|...++.... .
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-e
Confidence            457789999874666667677889999998754433333234456778999997666655543  3567777766322 2


Q ss_pred             cccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           94 RPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      ..+..  ..-.....+++++++..|+.+. ..+.|...|+.......... +......+|++..+  .++++-...+.|.
T Consensus       163 ~~l~~--~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~--~ly~td~~~~~V~  237 (619)
T 3s94_A          163 FIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED--ILYWTDWSTHSIL  237 (619)
T ss_dssp             EEEEC--SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEE
T ss_pred             EEEEe--CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC--EEEEecCCCCEEE
Confidence            22211  1134578899999776666654 56789999986543322222 22233456777655  3667766788899


Q ss_pred             EeeCCCCCcceEE
Q 017194          173 MWDFSKGRPNKIV  185 (375)
Q Consensus       173 ~wd~~~~~~~~~~  185 (375)
                      ..|..+++....+
T Consensus       238 ~~d~~tg~~~~~i  250 (619)
T 3s94_A          238 ACNKYTGEGLREI  250 (619)
T ss_dssp             EEESSSCCCCEEC
T ss_pred             EEECCCCcccEEE
Confidence            9998877655443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.00  E-value=0.004  Score=50.69  Aligned_cols=185  Identities=11%  Similarity=0.101  Sum_probs=93.2

Q ss_pred             CCEEEEeCCC----CcEEEEecccCceeeE--eeecCccEEEEEEeCCCCeEEEEcC----C-----CeEEEEECCCCCc
Q 017194           28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSS----G-----KEVKSFDVHMPAS   92 (375)
Q Consensus        28 ~~~l~s~~~d----~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~----d-----~~i~iwd~~~~~~   92 (375)
                      +.+++.|+.+    ..+.+||..+.+-...  +......- +++. .++..++.|+.    +     ..+.+||+.+.+ 
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-  101 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-  101 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE-
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe-
Confidence            5677777732    3688999876653221  11111111 2222 25666666665    2     468899988653 


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      +..+.........-..+.+  +++.++.|+.+     ..+.+||+.+.+-  +..+. ...... +++.. ++. +++.|
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~-~~~~~-~~~-iyv~G  175 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-TRRIGV-GVAVL-NRL-LYAVG  175 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-SCCBSC-EEEEE-TTE-EEEEC
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC-ccccce-EEEEE-CCE-EEEEe
Confidence            3333333221122222222  56666666533     4688999876542  22222 111111 22222 444 77777


Q ss_pred             ecC-----CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-----CcEEEE
Q 017194          166 GLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVI  235 (375)
Q Consensus       166 ~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~  235 (375)
                      +.+     ..+.+||+.+.+-...-...            .+..-.++...       ++++++.|+.+     ..+.+|
T Consensus       176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          176 GFDGTNRLNSAECYYPERNEWRMITAMN------------TIRSGAGVCVL-------HNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCCS------------SCCBSCEEEEE-------TTEEEEECCBCSSSBCCCEEEE
T ss_pred             CCCCCCcCceEEEEeCCCCeEeeCCCCC------------CccccceEEEE-------CCEEEEEeCCCCCCccceEEEE
Confidence            754     45888998765432211111            01111222222       47777777654     468888


Q ss_pred             eCCCc
Q 017194          236 NIESE  240 (375)
Q Consensus       236 d~~~~  240 (375)
                      |+.+.
T Consensus       237 d~~~~  241 (308)
T 1zgk_A          237 DVETE  241 (308)
T ss_dssp             ETTTT
T ss_pred             eCCCC
Confidence            88753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.99  E-value=0.0049  Score=51.22  Aligned_cols=144  Identities=12%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEee---ecCccEEEEEEeCC---CCeEEEEcC-C-----C
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTD---VGNGPVTSLCFKSG---NEDIIYVSS-G-----K   80 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~---~~~~~v~~l~~~~~---~~~l~~~~~-d-----~   80 (375)
                      -..-..++|.|+ ++++++ ..+|.|.+++  .++.  +..+.   ........|+|+|+   +..|..+.. .     +
T Consensus        30 l~~P~~ia~~pd-G~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLPD-GGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECTT-SCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcCC-CeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            345678999999 776555 4568999998  3432  11111   12456889999998   445544433 2     6


Q ss_pred             eEEEEECCCCCc--c-ccccccc---CCCcceeEEEEcCCCCeEEEEeC-------------CCcEEEEeCcCc------
Q 017194           81 EVKSFDVHMPAS--W-RPLESYN---YNKEEINQIVCNPKSSFLACADD-------------GGDVKIIDIRQH------  135 (375)
Q Consensus        81 ~i~iwd~~~~~~--~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~------  135 (375)
                      .|..++...+..  . ..+..+.   ........++|.|+|.+.++.+.             .|.|.-++.+..      
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            788888764311  1 1111122   11123468999999966555332             245666665430      


Q ss_pred             ------eeeeeEecCcccceeEEEEee-CCCcEEEE
Q 017194          136 ------CLYKSLRAGHSSICSSVQFIP-WKPWEVIS  164 (375)
Q Consensus       136 ------~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~  164 (375)
                            .....+..++. ....++|+| ++. ++++
T Consensus       186 f~~~~~~~~~i~a~G~r-np~g~a~d~~~g~-l~v~  219 (352)
T 2ism_A          186 FLGRRGARPEVYSLGHR-NPQGLAWHPKTGE-LFSS  219 (352)
T ss_dssp             TTTCTTSCTTEEEECCS-EECCCEECTTTCC-EEEE
T ss_pred             ccCCCCCCccEEEEcCC-CcccEEEECCCCC-EEEE
Confidence                  11122221343 357889999 554 4444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.96  E-value=0.0054  Score=50.97  Aligned_cols=103  Identities=10%  Similarity=0.119  Sum_probs=61.6

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc---ccCCCcceeEEEEcCC---CCeEEEEeC-C-----Cc
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES---YNYNKEEINQIVCNPK---SSFLACADD-G-----GD  126 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~  126 (375)
                      .....++|.|+|+.++ +..++.|++++  +++ ...+..   ..........++++|+   +..|+++.. .     ..
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            4567999999998554 45669999998  332 222211   1112456789999998   556555543 2     56


Q ss_pred             EEEEeCcCce-----e-eeeEe--cCcccceeEEEEeeCCCcEEEEee
Q 017194          127 VKIIDIRQHC-----L-YKSLR--AGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       127 i~iwd~~~~~-----~-~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      |..++...++     . +..+.  .........++|.|+|. ++++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence            8888876431     1 12232  01112346899999996 566543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.96  E-value=0.0048  Score=50.06  Aligned_cols=104  Identities=12%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             CeEEEEcCC----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCcCcee--ee
Q 017194           71 EDIIYVSSG----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHCL--YK  139 (375)
Q Consensus        71 ~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~  139 (375)
                      ..++.|+.+    ..+..||+.+.+ +..+.........- +++. -++..++.|+.+     ..+.+||..+.+-  +.
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            344455432    467888887653 44333332211111 1222 256667777644     3588999876642  22


Q ss_pred             eEecCcccceeEEEEeeCCCcEEEEeecCC-----eEEEeeCCCCCc
Q 017194          140 SLRAGHSSICSSVQFIPWKPWEVISGGLDS-----KLVMWDFSKGRP  181 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~  181 (375)
                      .+. ...... +++. -++. +++.|+.++     .+.+||+.+.+-
T Consensus        94 ~~p-~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           94 NMR-DRRSTL-GAAV-LNGL-LYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             CCS-SCCBSC-EEEE-ETTE-EEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCC-ccccce-EEEE-ECCE-EEEEcCCCCCccCceEEEEeCCCCeE
Confidence            222 111111 2222 2444 677777553     577888876543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.95  E-value=0.0049  Score=49.93  Aligned_cols=145  Identities=10%  Similarity=0.138  Sum_probs=73.4

Q ss_pred             CCeEEEEc-CC-----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCcCce--
Q 017194           70 NEDIIYVS-SG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC--  136 (375)
Q Consensus        70 ~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~--  136 (375)
                      +..++.|+ .+     ..+.+||+.+.+ +..+............+  ..++..++.|+.+     ..+.+||+.+.+  
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQE-WSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCe-EEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            44555555 22     478889987653 34433332211111122  2356677777654     468999987765  


Q ss_pred             ---eeeeEecCcccceeEEEEeeCCCcEEEEeecC-----CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          137 ---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       137 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                         .+..+. ...... +++. -++. +++.|+.+     ..+.+||+.+.+-...-...            .+..-.++
T Consensus        92 ~W~~~~~~p-~~r~~~-~~~~-~~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------------~~r~~~~~  155 (301)
T 2vpj_A           92 VWYSVAPMN-VRRGLA-GATT-LGDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ------------TAREGAGL  155 (301)
T ss_dssp             CCEEECCCS-SCCBSC-EEEE-ETTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEECS------------SCCBSCEE
T ss_pred             eeEECCCCC-CCccce-eEEE-ECCE-EEEEcccCCCcccceEEEEcCCCCeEEECCCCC------------CCcccceE
Confidence               222222 111111 2222 2444 67777654     36888998876543332211            01111222


Q ss_pred             eecCCccccCCCCEEEEEecC-----CcEEEEeCCCc
Q 017194          209 AIPDADMLDKTNKICVVAKGD-----GVVDVINIESE  240 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  240 (375)
                      +..       ++++++.|+.+     ..+.+||+.+.
T Consensus       156 ~~~-------~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          156 VVA-------SGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             EEE-------TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EEE-------CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            222       47777777654     35777887753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.92  E-value=0.018  Score=55.64  Aligned_cols=178  Identities=10%  Similarity=-0.034  Sum_probs=91.6

Q ss_pred             CCceeEEEEecCC-----CCEEEEeCC-CCcEEEEecccCceeeEeeec-CccEEEEEEe--CCCCeEEEEcCCCeEEEE
Q 017194           15 KATATCCIASRDR-----PGFVASSGE-DGCICWFDLRSKDVQLVTDVG-NGPVTSLCFK--SGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        15 ~~~i~~~~~~~~~-----~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~--~~~~~l~~~~~d~~i~iw   85 (375)
                      ...|.|+++.|..     .+++|.|.. |++++|+++.+.+.+....-. .....++.+.  ....+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            5679999998642     368999986 999999999876654332211 2234444443  234578888889988666


Q ss_pred             ECC--CCCcccccccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEecCcccceeEE-EEeeCC-Cc
Q 017194           86 DVH--MPASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV-QFIPWK-PW  160 (375)
Q Consensus        86 d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~  160 (375)
                      .+.  ++.....-..+-+ ..++.-..+...+.. +++.+ +....++.-+ ++.... . -.-..+..+ .|+... +.
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~-l~~~~v~~~~~F~se~~~~  707 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-N-VNLKEVNYMCPLNSDGYPD  707 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-E-BSSSCCCEEEEECCSSSTT
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-c-cChHHhceEeccCcccCCC
Confidence            554  3322111111222 334444444444433 33333 4444444432 222111 1 111233333 343321 11


Q ss_pred             EEEEeecCCeEEEeeCCCCCcc--eEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194          161 EVISGGLDSKLVMWDFSKGRPN--KIVNFGLPENNGNAGQCYNPAFVHAIAIPD  212 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (375)
                      -++..+ ++.+++..+...+..  +.+.++              ..+..++++|
T Consensus       708 g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~--------------~Tprri~y~~  746 (1158)
T 3ei3_A          708 SLALAN-NSTLTIGTIDEIQKLHIRTVPLY--------------ESPRKICYQE  746 (1158)
T ss_dssp             EEEEEC-SSCEEEEEECCSSSEEEEEEECS--------------SEEEEEEEEG
T ss_pred             cEEEEc-CCceEEEEecccCCeeEEEEeCC--------------CCceEEEEcC
Confidence            244333 456888887654333  333333              5667777777

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.90  E-value=0.0072  Score=50.26  Aligned_cols=103  Identities=12%  Similarity=0.070  Sum_probs=61.3

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc---cCCCcceeEEEEcCC---CCeEEEEeC----C----
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPK---SSFLACADD----G----  124 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d----  124 (375)
                      .....++|.|+|+.+ ++..++.|++++. +++  ..+..+   .........++++|+   +..|+++..    +    
T Consensus        29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYL-VTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEEEETTEEE-EEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            456789999999744 4555699999873 333  222211   112356889999997   555555443    2    


Q ss_pred             CcEEEEeCcCc-------ee-eeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194          125 GDVKIIDIRQH-------CL-YKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       125 g~i~iwd~~~~-------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ..|..|+....       +. +..+..........|+|.|+|. ++++.+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence            56777776543       11 1122211112356799999997 566543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.87  E-value=0.022  Score=55.05  Aligned_cols=146  Identities=8%  Similarity=0.059  Sum_probs=86.4

Q ss_pred             CCeEEEEe----------CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceE
Q 017194          115 SSFLACAD----------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI  184 (375)
Q Consensus       115 ~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  184 (375)
                      ..++++|.          ..|.|.+|++..++.....+....++|++++--. |  .|++|- ..+|++|++...+.+. 
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g--~Lla~i-g~~l~vy~l~~~~~L~-  918 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G--KLLASI-NSTVRLYEWTTEKELR-  918 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET-T--EEEEEE-TTEEEEEEECTTSCEE-
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C--EEEEEc-CCEEEEEECCCCceEE-
Confidence            46888876          3478999998755433222213467788876443 3  344443 4789999998765444 


Q ss_pred             EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194          185 VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI  264 (375)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~  264 (375)
                      .+..            .-..+..+....      .++++++|..-..+.++..+..                        
T Consensus       919 ~~~~------------~~~~i~~~~l~~------~~~~I~vgD~~~Sv~~~~y~~~------------------------  956 (1158)
T 3ei3_A          919 TECN------------HYNNIMALYLKT------KGDFILVGDLMRSVLLLAYKPM------------------------  956 (1158)
T ss_dssp             EEEE------------ECCCSCEEEEEE------ETTEEEEEESSBCEEEEEEETT------------------------
T ss_pred             EEee------------ccccEEEEEEec------cCCEEEEEEhhheEEEEEEEcC------------------------
Confidence            2211            001122222222      3788999988777777654321                        


Q ss_pred             ceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                  ...+..+. -..+...++++.+-   .+ ..++.+..+|.|.+.....
T Consensus       957 ------------~~~L~~~a-~D~~~~~vta~~~l---d~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          957 ------------EGNFEEIA-RDFNPNWMSAVEIL---DD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ------------TTEEEEEE-ECCSCBCEEEEEEE---ET-TEEEEEETTSEEEEEEECT
T ss_pred             ------------CCeEEEEE-eecccccEEEEEEE---cc-CcEEEEcCCCcEEEEecCC
Confidence                        11112111 12235678888886   34 4778899999999998766

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.87  E-value=0.0081  Score=49.93  Aligned_cols=145  Identities=12%  Similarity=0.101  Sum_probs=79.5

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-eeeEee---ecCccEEEEEEeCC---CCeEEEEcC----C----
Q 017194           15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTD---VGNGPVTSLCFKSG---NEDIIYVSS----G----   79 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~---~~~~~v~~l~~~~~---~~~l~~~~~----d----   79 (375)
                      -..-..|+|.|+ ++++++ ..+|.|.+++ ..++ .+..+.   ........|+++|+   +..|..+..    +    
T Consensus        28 l~~P~~ia~~pd-G~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGG-GRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEET-TEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCC-CeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            345678999998 775555 5558999997 3444 222211   12356889999997   444544332    2    


Q ss_pred             CeEEEEECCCCC-c---ccc-ccccc-CCCcceeEEEEcCCCCeEEEEeC-------------CCcEEEEeCcCce----
Q 017194           80 KEVKSFDVHMPA-S---WRP-LESYN-YNKEEINQIVCNPKSSFLACADD-------------GGDVKIIDIRQHC----  136 (375)
Q Consensus        80 ~~i~iwd~~~~~-~---~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~----  136 (375)
                      +.|..|+..... .   .+. +..+. ........++|.|||.++++.+.             .|.|..++....-    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            567777766431 0   111 11121 11123467999999976665432             2456666654210    


Q ss_pred             ---eeeeEecCcccceeEEEEee-CCCcEEEE
Q 017194          137 ---LYKSLRAGHSSICSSVQFIP-WKPWEVIS  164 (375)
Q Consensus       137 ---~~~~~~~~~~~~v~~~~~~~-~~~~~l~~  164 (375)
                         ....+..++. ....++|+| ++. ++++
T Consensus       185 pf~~~~i~a~G~r-np~Gla~d~~~g~-l~v~  214 (354)
T 3a9g_A          185 PFPNSPIWSYGHR-NPQGIDWHRASGV-MVAT  214 (354)
T ss_dssp             SSTTCCEEEECCS-CCCEEEECTTTCC-EEEE
T ss_pred             CCCCCcEEEEccC-CcceEEEeCCCCC-EEEE
Confidence               1122221443 357899999 554 4444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.79  E-value=0.0096  Score=48.35  Aligned_cols=104  Identities=8%  Similarity=0.053  Sum_probs=55.4

Q ss_pred             CeEEEEcCC--CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC----CcEEEEeCcCceeee--eEe
Q 017194           71 EDIIYVSSG--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHCLYK--SLR  142 (375)
Q Consensus        71 ~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~  142 (375)
                      ..++.|+.+  ..+.+||..+.+ +..+.........-..+.  -++..++.|+.+    ..+.+||+.+.+-..  .+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYS-WTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTE-EEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCC-EecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            345555543  578899988653 344433322111222222  256677777654    568899988764322  222


Q ss_pred             cCcccceeEEEEeeCCCcEEEEeecC------CeEEEeeCCCCCc
Q 017194          143 AGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRP  181 (375)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~  181 (375)
                       ...... +++. -++. +++.|+.+      ..+.+||..+.+-
T Consensus        90 -~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           90 -TPRDSL-AACA-AEGK-IYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             -SCCBSC-EEEE-ETTE-EEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             -ccccce-eEEE-ECCE-EEEECCCCCCCcEeeeEEEEeCCCCce
Confidence             111111 2222 2444 77777765      4688899887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.76  E-value=0.011  Score=48.20  Aligned_cols=183  Identities=11%  Similarity=0.023  Sum_probs=92.1

Q ss_pred             EEEEeCCCCcEEEEecccCceee-EeeecCccEEEEEEeCCCCeEEEEcC-----C------CeEEEEECCCCCcccccc
Q 017194           30 FVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSS-----G------KEVKSFDVHMPASWRPLE   97 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~~~~   97 (375)
                      +++.|+  ..+.+||..+++-.. .+..............++..++.|+.     .      ..+.+||..+.+ +..+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-WLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-EEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-EEECC
Confidence            455666  469999998776432 11111122222333456777777773     1      137788887643 34333


Q ss_pred             cccCCCcceeEEEEcCCCCeEEEEeCC--------CcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           98 SYNYNKEEINQIVCNPKSSFLACADDG--------GDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      ........-..+.+  +++.++.|+.+        ..+.+||+.+.+-  +..+. ..... .+++. -++. +++.|+.
T Consensus        84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~-~~~~-iyv~GG~  157 (315)
T 4asc_A           84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-YVVYG-HTVLS-HMDL-VYVIGGK  157 (315)
T ss_dssp             CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-SCCBS-CEEEE-ETTE-EEEECCB
T ss_pred             CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-Ccccc-eeEEE-ECCE-EEEEeCC
Confidence            33211111112222  55666666632        4588999887632  22222 11111 12222 3444 7777776


Q ss_pred             -C-----CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-----cEEEEe
Q 017194          168 -D-----SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----VVDVIN  236 (375)
Q Consensus       168 -d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d  236 (375)
                       +     ..+.+||+.+.+-...-...            .+..-.+++..       ++++++.|+.++     .+.+||
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWKELAPMQ------------TARSLFGATVH-------DGRIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEEECCCCS------------SCCBSCEEEEE-------TTEEEEEEEECSSSEEEEEEEEE
T ss_pred             CCCCcccceEEEEeCCCCeEEECCCCC------------CchhceEEEEE-------CCEEEEEeccCCCCccceEEEEE
Confidence             2     46888998765432211111            01111222332       477888887654     477888


Q ss_pred             CCCc
Q 017194          237 IESE  240 (375)
Q Consensus       237 ~~~~  240 (375)
                      +.+.
T Consensus       219 ~~~~  222 (315)
T 4asc_A          219 ITDN  222 (315)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.66  E-value=0.019  Score=48.09  Aligned_cols=202  Identities=14%  Similarity=0.216  Sum_probs=125.3

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY   99 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~   99 (375)
                      +.-.+|. .+.+|--. ..++.|+|+++.+.++...- ...|.-=.|-.+. .|+..+ +..|+-|++....  .+.+.+
T Consensus        70 sAIMnP~-~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s--~P~kvF  142 (494)
T 1bpo_A           70 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES--QPVKMF  142 (494)
T ss_dssp             EEEECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSC--CCEEEE
T ss_pred             eeeeCCC-CcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCC--Cchhhe
Confidence            3456777 56666554 57899999999888887775 4466666775443 455554 6789999997532  333333


Q ss_pred             cCC----CcceeEEEEcCCCCeEEEEe-------CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCC--CcEEEEee
Q 017194          100 NYN----KEEINQIVCNPKSSFLACAD-------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK--PWEVISGG  166 (375)
Q Consensus       100 ~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~  166 (375)
                      ..|    ...|..-..+++.++++..+       -.|.+.+|..+.+ .-+.+. +|......+....+.  ..++..+.
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC-CSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe-eeeeeeEEEecCCCCCCceEEEEEE
Confidence            322    35677888899999876543       2467889997644 345566 776655444332111  11333333


Q ss_pred             c---CCeEEEeeCCCC---C---cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          167 L---DSKLVMWDFSKG---R---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       167 ~---d~~i~~wd~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                      .   .+++.+-++...   .   ..+..+...|+.       ...+..-++.+++      ....+..-+.-|.|++||+
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe-------~~~DFPvamqvs~------kygviyviTK~G~i~lyDl  287 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-------AQNDFPVAMQISE------KHDVVFLITKYGYIHLYDL  287 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT-------STTCCEEEEEEET------TTTEEEEEETTSEEEEEET
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc-------cccCceeEEEecc------cCCEEEEEecCceEEEEec
Confidence            3   267888887542   1   111222111110       0134566788887      6888899999999999999


Q ss_pred             CCccee
Q 017194          238 ESELNI  243 (375)
Q Consensus       238 ~~~~~~  243 (375)
                      .++..+
T Consensus       288 eTgt~i  293 (494)
T 1bpo_A          288 ETGTCI  293 (494)
T ss_dssp             TTCCEE
T ss_pred             ccceee
Confidence            997444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.65  E-value=0.018  Score=47.57  Aligned_cols=157  Identities=16%  Similarity=0.116  Sum_probs=94.3

Q ss_pred             ceeEEEEecCCCCEEEEeC------------CCCcEEEEecccCc-eeeEee--e-----cCccEEEEEEeC--CCC-eE
Q 017194           17 TATCCIASRDRPGFVASSG------------EDGCICWFDLRSKD-VQLVTD--V-----GNGPVTSLCFKS--GNE-DI   73 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~------------~d~~i~iw~~~~~~-~~~~~~--~-----~~~~v~~l~~~~--~~~-~l   73 (375)
                      ..-.+...|+ |..+++++            .+|.|.++|.++.. ....+.  +     .......+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~-G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTT-SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCC-CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            4456777886 66555552            68999999987431 122222  1     123566777765  343 34


Q ss_pred             EEEc-C--CCeEEEEECCCC-CcccccccccCC-CcceeEEEEcCCCCeEEEEe-----------------CCCcEEEEe
Q 017194           74 IYVS-S--GKEVKSFDVHMP-ASWRPLESYNYN-KEEINQIVCNPKSSFLACAD-----------------DGGDVKIID  131 (375)
Q Consensus        74 ~~~~-~--d~~i~iwd~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~iwd  131 (375)
                      +++. .  +.++.+|++..+ .....+..+.+. -...+.+.+.++|.+.++..                 ..|.|..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            4442 2  467888887643 223333333321 23578899999998776653                 124455555


Q ss_pred             CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      .  ++. ..+. ..-...+.++|+|+++.++++-+..+.|..|++..
T Consensus       210 ~--~~~-~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          210 P--NDV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             T--TCC-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             C--CeE-EEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            4  332 2232 23346799999999986666666788999999874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.65  E-value=0.017  Score=47.00  Aligned_cols=105  Identities=7%  Similarity=0.013  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCC----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC----C-----CcEEEEeCcCc
Q 017194           69 GNEDIIYVSSG----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD----G-----GDVKIIDIRQH  135 (375)
Q Consensus        69 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~  135 (375)
                      ++..++.|+.+    ..+.+||..+.+ +..+.........- +++. .++..++.|+.    +     ..+.+||+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGT-WLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTE-EEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCe-EeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            44555555532    468888887643 33333332111111 2222 25666666654    2     46888998766


Q ss_pred             ee--eeeEecCcccceeEEEEeeCCCcEEEEeecC-----CeEEEeeCCCCC
Q 017194          136 CL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGR  180 (375)
Q Consensus       136 ~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~  180 (375)
                      +-  +..+. ........ +.. ++. +++.|+.+     ..+.+||+.+.+
T Consensus       101 ~W~~~~~~p-~~r~~~~~-~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A          101 QWSPCAPMS-VPRNRIGV-GVI-DGH-IYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             EEEECCCCS-SCCBTCEE-EEE-TTE-EEEECCEETTEECCCEEEEETTTTE
T ss_pred             eEeECCCCC-cCccccEE-EEE-CCE-EEEEcCCCCCcccccEEEECCCCCe
Confidence            42  22222 11111122 222 444 67777643     357888887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.62  E-value=0.022  Score=47.78  Aligned_cols=234  Identities=10%  Similarity=0.155  Sum_probs=133.0

Q ss_pred             CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194           36 EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS  115 (375)
Q Consensus        36 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  115 (375)
                      .+..|.|.|+..+..+..-..   .-.+.-.+|..+.++.-. ..++.++|+++...+   +.+.. ..+|.--.|-.+.
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~kl---ks~~~-~e~VvfWkWis~~  117 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHTM-TDDVTFWKWISLN  117 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEE---EEEEC-SSCCCEEEEEETT
T ss_pred             CCCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhh---cceec-CCCceEEEecCCC
Confidence            344799999988665433221   112455688887776655 789999999975443   33322 3456666665443


Q ss_pred             CeEEEEeCCCcEEEEeCcCc-eeeeeEecCcc----cceeEEEEeeCCCcEEEEee------cCCeEEEeeCCCCCcceE
Q 017194          116 SFLACADDGGDVKIIDIRQH-CLYKSLRAGHS----SICSSVQFIPWKPWEVISGG------LDSKLVMWDFSKGRPNKI  184 (375)
Q Consensus       116 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~  184 (375)
                       .|+..+ +..|+-|++... .+.+.|. -|.    ..|..-..+++.+|++++|-      -.|.+.+|..+.+ ..+.
T Consensus       118 -~l~lVT-~taVyHWsi~~~s~P~kvFd-R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~  193 (494)
T 1bpo_A          118 -TVALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQP  193 (494)
T ss_dssp             -EEEEEC-SSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEE
T ss_pred             -eEEEEc-CCeeEEecccCCCCchhhee-cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccch
Confidence             455443 467999999743 4555565 442    45667777888888777664      2467889998743 2333


Q ss_pred             EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---CCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194          185 VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~  261 (375)
                      ++ +            |...-..+.+...   .....+++.+..   .+.+++.++.......   .+..          
T Consensus       194 ie-G------------haa~F~~~~~~g~---~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~----------  244 (494)
T 1bpo_A          194 IE-G------------HAASFAQFKMEGN---AEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFP----------  244 (494)
T ss_dssp             EC-C------------SEEEEEEEECTTC---SSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCC----------
T ss_pred             he-e------------eeeeeEEEecCCC---CCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCcc----------
Confidence            33 2            1111111111110   001223444433   2789998886420000   0000          


Q ss_pred             cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV  328 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  328 (375)
                                     .+.......-..-.+-.-++..|   +.-..+..-+.-|.|.+||+.++..+
T Consensus       245 ---------------kk~vdv~fppe~~~DFPvamqvs---~kygviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          245 ---------------KKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             ---------------CEEEECCCCTTSTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             ---------------ceeeeeeCCcccccCceeEEEec---ccCCEEEEEecCceEEEEecccceee
Confidence                           00111111112234556678888   77778888888999999999999654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.58  E-value=0.024  Score=47.13  Aligned_cols=140  Identities=10%  Similarity=0.066  Sum_probs=75.9

Q ss_pred             CceeEEEEecCCCC-EEEEeCCCCcEEEEecccCcee---eEe----eecCccEEEEEEeCC---CCeEEEEc-C-----
Q 017194           16 ATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQ---LVT----DVGNGPVTSLCFKSG---NEDIIYVS-S-----   78 (375)
Q Consensus        16 ~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~---~~~----~~~~~~v~~l~~~~~---~~~l~~~~-~-----   78 (375)
                      ..-..|+|.|+ ++ ++++ ...|.|++++.. +...   ..+    .........|+++|+   +..|..+. .     
T Consensus        18 ~~P~~i~~~pd-G~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPD-NHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECST-TCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCC-CCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            45678999999 77 5554 457899999853 3221   111    112346789999995   44444432 2     


Q ss_pred             --CCeEEEEECCCCC----cccc-ccccc---CCCcceeEEEEcCCCCeEEEEeC-------------CCcEEEEeCcCc
Q 017194           79 --GKEVKSFDVHMPA----SWRP-LESYN---YNKEEINQIVCNPKSSFLACADD-------------GGDVKIIDIRQH  135 (375)
Q Consensus        79 --d~~i~iwd~~~~~----~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~  135 (375)
                        ...|..+++....    ..+. +..+.   .....-..++|.||+.++++.+.             .|.|.-++.+..
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              2356666665321    1111 11111   01122467999999965555433             245777776532


Q ss_pred             e------------eeeeEecCcccceeEEEEee-CCC
Q 017194          136 C------------LYKSLRAGHSSICSSVQFIP-WKP  159 (375)
Q Consensus       136 ~------------~~~~~~~~~~~~v~~~~~~~-~~~  159 (375)
                      -            ....+..++. ....++|.| .+.
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~  210 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNA  210 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTE
T ss_pred             CCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCC
Confidence            0            1222321443 468899999 554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.58  E-value=0.0099  Score=49.51  Aligned_cols=66  Identities=11%  Similarity=0.194  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCC-CeEEEEECCC-CCccccccccc-CCCcceeEEEEcCCCCeEEEEeC-C---------CcEEEEeCcCc
Q 017194           69 GNEDIIYVSSG-KEVKSFDVHM-PASWRPLESYN-YNKEEINQIVCNPKSSFLACADD-G---------GDVKIIDIRQH  135 (375)
Q Consensus        69 ~~~~l~~~~~d-~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~  135 (375)
                      ++..++.|+.+ ..+.++|+.+ ...+..+..+. .....-..+.+  +++.++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            55566666543 5788899864 23445444433 11111222222  5666666665 2         46889998776


Q ss_pred             e
Q 017194          136 C  136 (375)
Q Consensus       136 ~  136 (375)
                      +
T Consensus        97 ~   97 (357)
T 2uvk_A           97 S   97 (357)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.54  E-value=0.024  Score=46.19  Aligned_cols=100  Identities=7%  Similarity=0.030  Sum_probs=51.3

Q ss_pred             EEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC----C-------CcEEEEeCcCcee--ee
Q 017194           73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD----G-------GDVKIIDIRQHCL--YK  139 (375)
Q Consensus        73 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~--~~  139 (375)
                      ++.|+  ..+.+||..+++ +.. .................++..++.|+.    +       ..+.+||..+.+-  +.
T Consensus         8 ~~~GG--~~~~~yd~~~~~-W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANE-CYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEET--TEEEEEETTTTE-EEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEcC--CceEEECCCCCe-Eec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            34444  678999998754 332 222211122223333457777777773    1       1277888876643  21


Q ss_pred             eEecCcccceeEEEEeeCCCcEEEEeecC--------CeEEEeeCCCCC
Q 017194          140 SLRAGHSSICSSVQFIPWKPWEVISGGLD--------SKLVMWDFSKGR  180 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~  180 (375)
                      .+. ..... .+++.. ++. +++.|+.+        ..+.+||..+.+
T Consensus        84 ~~p-~~r~~-~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~  128 (315)
T 4asc_A           84 PLP-SPRCL-FGLGEA-LNS-IYVVGGREIKDGERCLDSVMCYDRLSFK  128 (315)
T ss_dssp             CBS-SCEES-CEEEEE-TTE-EEEECCEESSTTCCBCCCEEEEETTTTE
T ss_pred             CCC-cchhc-eeEEEE-CCE-EEEEeCCcCCCCCcccceEEEECCCCCc
Confidence            221 11111 122222 444 67777742        458889987664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.021  Score=46.72  Aligned_cols=201  Identities=9%  Similarity=0.089  Sum_probs=107.2

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEE--eCCCCeEEEE--cCCCeEEEEECCCCCcccccccccC-C
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCF--KSGNEDIIYV--SSGKEVKSFDVHMPASWRPLESYNY-N  102 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~--~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~-~  102 (375)
                      ..++.++.||.|.-.|.++|+.+..++.. ..++....-  .+.+..++.+  ..||.|..++..++.....+..-.. .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999988887653 122222110  0112234433  5799999999887643222211000 0


Q ss_pred             CcceeE---EEE-c----CCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc------eeEEEEe-----eCCCcEEE
Q 017194          103 KEEINQ---IVC-N----PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI------CSSVQFI-----PWKPWEVI  163 (375)
Q Consensus       103 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------v~~~~~~-----~~~~~~l~  163 (375)
                      ..++..   ... .    -.+..+++|+.+|.+...|+++|+.+..+..+....      ..+....     ..+. .++
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~-~v~  169 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN-MIV  169 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC-EEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC-eEE
Confidence            111111   000 0    134578899999999999999999998887221111      0011110     1123 577


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      .+..+..+.+.+ ++++ ...+++..-.          +..+. -.+........++.+ ++++.||.|.-+|..++...
T Consensus       170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~----------~~~~~-~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~  235 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGA-SYNVTYSTWQ----------QNVLD-VPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR  235 (339)
T ss_dssp             EEEEEEECEECC-TTSC-CCCCEEEEEE----------CCTTT-HHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred             EecceEEEEEEC-CCCC-eEEEeccccc----------ccccc-cccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence            777777787777 4554 3332211000          00000 000000000113555 55789999999999987765


Q ss_pred             e
Q 017194          244 S  244 (375)
Q Consensus       244 ~  244 (375)
                      .
T Consensus       236 W  236 (339)
T 2be1_A          236 W  236 (339)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.51  E-value=0.028  Score=46.19  Aligned_cols=149  Identities=10%  Similarity=0.071  Sum_probs=85.3

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEe----eecCccEEEEEEeCC---CCeEEEE---
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVT----DVGNGPVTSLCFKSG---NEDIIYV---   76 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~----~~~~~~v~~l~~~~~---~~~l~~~---   76 (375)
                      ..+...-..-+.|+|.|+ ++++++--..|.|++++...++..  ..+    .........|+++|+   +..|...   
T Consensus        25 ~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             EEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            344444456788999999 788877766899999987655532  111    123567889999995   3334332   


Q ss_pred             cCCCeEEEEECCCCC----cc---c-cccccc-CCCcceeEEEEcCCCCeEEEEeC-------------CCcEEEEeCcC
Q 017194           77 SSGKEVKSFDVHMPA----SW---R-PLESYN-YNKEEINQIVCNPKSSFLACADD-------------GGDVKIIDIRQ  134 (375)
Q Consensus        77 ~~d~~i~iwd~~~~~----~~---~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~  134 (375)
                      ..++.|.-|.+..+.    ..   + .+..+. .....-..+.|.||+.+.++.+.             .|.|.-.+...
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            234566667665421    11   1 111121 11123467999999977666432             35565556542


Q ss_pred             ce-------eeeeEecCcccceeEEEEeeCCC
Q 017194          135 HC-------LYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus       135 ~~-------~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      .-       ....+..+|. ....++|+|++.
T Consensus       184 ~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~  214 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQR  214 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCS-BCCEEEECTTCC
T ss_pred             CccCCCCCCCCeEEeeCCC-CcceEEECCCCC
Confidence            20       1122322554 457899999876

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.50  E-value=0.033  Score=46.66  Aligned_cols=160  Identities=11%  Similarity=0.153  Sum_probs=96.7

Q ss_pred             eCCCCeEEEEcCCCeEEEEECCCCCccccccccc-CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce---------
Q 017194           67 KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---------  136 (375)
Q Consensus        67 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------  136 (375)
                      ..+|..++.+- ++.||.-++......+.+..-. ..-..|..+..+|+|++||..+. ..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            34455555444 4677777776433333322210 01236788999999999998854 578888876321         


Q ss_pred             ---eeeeEecC-----cccceeEEEEeeCCCc--EEEEeecCCeEEEeeCCCCCcce-EEecCCCCCCCCCCcccCCCce
Q 017194          137 ---LYKSLRAG-----HSSICSSVQFIPWKPW--EVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       137 ---~~~~~~~~-----~~~~v~~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                         ..+.+..+     ...+|..+.|+|-+..  .|++-..|+.|++||+....... .++  ......  +.-.....+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~--k~~~~f--g~d~~~~ev  182 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN--KPNNSF--GLDARVNDI  182 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES--CCCSEE--ESCSSCCCE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh--cccccc--CCCcccceE
Confidence               11233311     2467999999997642  79999999999999998632111 222  100000  000012567


Q ss_pred             eEEeecCCccccCCCCEEEEEe--cCCcEEEEeCC
Q 017194          206 HAIAIPDADMLDKTNKICVVAK--GDGVVDVINIE  238 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~  238 (375)
                      .+++|.+      ++-.|.+.+  ..|.|+-.-.-
T Consensus       183 ~S~~Fg~------~~lTLYvl~~t~~GDIYAlcP~  211 (452)
T 3pbp_A          183 TDLEFSK------DGLTLYCLNTTEGGDIFAFYPF  211 (452)
T ss_dssp             EEEEECT------TSSCEEEEECTTSCEEEEESSC
T ss_pred             EEEEEcC------CCcEEEEEecCCCCCEEEECCC
Confidence            8999987      677777755  77888765543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.44  E-value=0.023  Score=47.57  Aligned_cols=159  Identities=11%  Similarity=0.080  Sum_probs=94.2

Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK  247 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  247 (375)
                      ++.||.-++......+.+....         ...-..+..+..+|      +|++||..+.. .|.|..+..+...... 
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~---------~i~f~~i~qlvlSp------sG~lLAl~g~~-~V~Vv~LP~~~~~~~~-  102 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSR---------HLVLDDTFHVISST------SGDLLCLFNDN-EIFVMEVPWGYSNVED-  102 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTT---------TCCCCTTCEEEECT------TSSEEEEECSS-EEEEEECCTTCSCCCC-
T ss_pred             CCEEEEEECCCCCcceEEecCc---------ccccCceeEEEECC------CCCEEEEecCC-eEEEEEecCccccCcc-
Confidence            4678887877555556665430         00012577899999      79999988654 8999988842111000 


Q ss_pred             ccCCCCCCceeecccccceeeeeeeecCCcceeEe-eeee----cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL-DYSV----GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                    ++.            ....++ .+.+    .....+|..+.|+|.+..+..|++-..|+.|++||+
T Consensus       103 --------------~~~------------~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl  156 (452)
T 3pbp_A          103 --------------VSI------------QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDI  156 (452)
T ss_dssp             --------------HHH------------HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEET
T ss_pred             --------------ccc------------ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEc
Confidence                          000            000000 0111    113578999999977777789999999999999999


Q ss_pred             CCceeeeecchhhhhh--hhcccccceeeeeecCCCCCcEEEee--CCCeEEE
Q 017194          323 SRFQGVQTSINNDLLI--KNINLNKKVNWLCTTPTESENLVVCD--TSKVVKV  371 (375)
Q Consensus       323 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~i  371 (375)
                      ........ .-.+...  ........|.+++|.+ ++-.|...+  ..|-|+-
T Consensus       157 ~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          157 LNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEE
T ss_pred             ccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEE
Confidence            97432111 0000000  1112235788999988 777677744  7787763

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.42  E-value=0.038  Score=45.62  Aligned_cols=157  Identities=12%  Similarity=0.102  Sum_probs=88.3

Q ss_pred             cEEEEEEeCCCCeEEEE------------cCCCeEEEEECCCCC-cccccccc----cCCCcceeEEEEcC--CCC-eEE
Q 017194           60 PVTSLCFKSGNEDIIYV------------SSGKEVKSFDVHMPA-SWRPLESY----NYNKEEINQIVCNP--KSS-FLA  119 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~------------~~d~~i~iwd~~~~~-~~~~~~~~----~~~~~~v~~~~~~~--~~~-~l~  119 (375)
                      ....+...|+|..++++            ..+|.|.++|+++.. ..+.+...    ....-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34456667776544443            158899999987421 12222221    11122455566644  343 344


Q ss_pred             EEe-C--CCcEEEEeCcCc----eeeeeEecCcccceeEEEEeeCCCcEEEEee-----------------cCCeEEEee
Q 017194          120 CAD-D--GGDVKIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGG-----------------LDSKLVMWD  175 (375)
Q Consensus       120 ~~~-~--dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~~wd  175 (375)
                      ++. .  +..|.+|+++..    ..+..+....-...+.+.+.++|. ++++..                 ..|.|..+|
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            443 2  467888877643    223344311224678999999997 555543                 124555555


Q ss_pred             CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCC
Q 017194          176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES  239 (375)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  239 (375)
                      .  ++ ...+..+             -...+.++|+|      +++.|+++. ..+.|..|++..
T Consensus       210 ~--~~-~~~~~~~-------------l~~pNGia~sp------Dg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          210 P--ND-VRVVAEG-------------FDFANGINISP------DGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             T--TC-CEEEEEE-------------ESSEEEEEECT------TSSEEEEEEGGGTEEEEEEECT
T ss_pred             C--Ce-EEEeecC-------------CcccCcceECC------CCCEEEEEeCCCCeEEEEEECC
Confidence            4  32 2222211             24578999999      788777765 568899999863

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.39  E-value=0.04  Score=44.98  Aligned_cols=184  Identities=13%  Similarity=0.064  Sum_probs=90.0

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeE-eeecCccEEEEEEeCCCCeEEEEcC----CC-------eEEEEECCCCCccccc
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSS----GK-------EVKSFDVHMPASWRPL   96 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~~   96 (375)
                      .+++.|+.  .+..||..+.+-... +..............++..++.|+.    ++       .+.+||..+.+ +..+
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~   93 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE-WVGL   93 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE-EEEC
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc-EEEC
Confidence            34555554  388999887764331 1111111222233456777777773    11       27788887543 3444


Q ss_pred             ccccCCCcceeEEEEcCCCCeEEEEeCC-------CcEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           97 ESYNYNKEEINQIVCNPKSSFLACADDG-------GDVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                      .........-..+.+  +++.++.|+.+       ..+.+||+.+.+-.  ..+. ..... .+++. .++. +++.|+.
T Consensus        94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~-~~~~~-~~~~-iyv~GG~  167 (318)
T 2woz_A           94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP-IKVYG-HNVIS-HNGM-IYCLGGK  167 (318)
T ss_dssp             SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS-SCEES-CEEEE-ETTE-EEEECCE
T ss_pred             CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC-Ccccc-cEEEE-ECCE-EEEEcCC
Confidence            333221111122222  56667777643       24788888765422  1121 11111 11222 3454 6777764


Q ss_pred             ------CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-----CcEEEEe
Q 017194          168 ------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVIN  236 (375)
Q Consensus       168 ------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d  236 (375)
                            -..+.+||+.+.+-...-...            .+..-.+++..       ++++++.|+.+     ..+.+||
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p------------~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd  228 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPMK------------TPRSMFGVAIH-------KGKIVIAGGVTEDGLSASVEAFD  228 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCCS------------SCCBSCEEEEE-------TTEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCCC------------CCcccceEEEE-------CCEEEEEcCcCCCCccceEEEEE
Confidence                  235889998876533221111            01111223332       47777877643     3466788


Q ss_pred             CCCc
Q 017194          237 IESE  240 (375)
Q Consensus       237 ~~~~  240 (375)
                      +.+.
T Consensus       229 ~~~~  232 (318)
T 2woz_A          229 LKTN  232 (318)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            7753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.36  E-value=0.048  Score=45.29  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=58.9

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc----cCCCcceeEEEEcCC---CCeEEEEeC--------
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY----NYNKEEINQIVCNPK---SSFLACADD--------  123 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~--------  123 (375)
                      .....|+|.|+|+.|+.+...|.|++++.. +.....+...    .........++++|+   +..|++...        
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            356799999999834455567999999854 2211122211    112346789999996   555554432        


Q ss_pred             CCcEEEEeCcCc--e--eeee-Eec--C---cccceeEEEEeeCCCcEEEEee
Q 017194          124 GGDVKIIDIRQH--C--LYKS-LRA--G---HSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       124 dg~i~iwd~~~~--~--~~~~-~~~--~---~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ...|..+++...  +  .... +..  .   .......|+|.|+|. ++++.+
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  148 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG  148 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence            234666665432  1  1111 110  0   111246799999996 555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.13  E-value=0.077  Score=43.25  Aligned_cols=95  Identities=6%  Similarity=-0.021  Sum_probs=46.9

Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC----CC-------cEEEEeCcCceee--eeEecCccc
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD----GG-------DVKIIDIRQHCLY--KSLRAGHSS  147 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~--~~~~~~~~~  147 (375)
                      .+..||..+.+ +... ................++..++.|+.    ++       .+.+||..+.+-.  ..+. ....
T Consensus        25 ~~~~yd~~~~~-W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~  101 (318)
T 2woz_A           25 AAVAYDPMENE-CYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP-SARC  101 (318)
T ss_dssp             EEEEEETTTTE-EEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBS-SCBC
T ss_pred             ceEEECCCCCc-eecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC-cccc
Confidence            47889988654 2221 11111111222233456777777773    12       1778888765432  2222 1111


Q ss_pred             ceeEEEEeeCCCcEEEEeecC-------CeEEEeeCCCCCc
Q 017194          148 ICSSVQFIPWKPWEVISGGLD-------SKLVMWDFSKGRP  181 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~  181 (375)
                      . .+++.. ++. +++.|+.+       ..+.+||+.+.+-
T Consensus       102 ~-~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W  139 (318)
T 2woz_A          102 L-FGLGEV-DDK-IYVVAGKDLQTEASLDSVLCYDPVAAKW  139 (318)
T ss_dssp             S-CEEEEE-TTE-EEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred             c-cceEEE-CCE-EEEEcCccCCCCcccceEEEEeCCCCCE
Confidence            1 122222 444 67777754       3578888876543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.09  E-value=0.17  Score=49.39  Aligned_cols=132  Identities=10%  Similarity=0.144  Sum_probs=81.0

Q ss_pred             CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC
Q 017194           37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS  116 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  116 (375)
                      ..+|.|.|+..+..+..-.   -.--+.-.+|..+.++.-+ ..++.|+|+++...+   +.+.. ..+|.--.|-.+. 
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~kl---ks~~~-~e~VvfWkWis~~-  117 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHTM-TDDVTFWKWISLN-  117 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhh---ccccc-CCCceEEEecCCC-
Confidence            3478888888765432211   1122344678777665554 789999999865433   33332 3466666666544 


Q ss_pred             eEEEEeCCCcEEEEeCcCc-eeeeeEecCc----ccceeEEEEeeCCCcEEEEee------cCCeEEEeeCCCC
Q 017194          117 FLACADDGGDVKIIDIRQH-CLYKSLRAGH----SSICSSVQFIPWKPWEVISGG------LDSKLVMWDFSKG  179 (375)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~  179 (375)
                      .|+..+ +..|+-|++... .+.+.|. -|    ...|..-..+++.+|++++|-      -.|.+.+|....+
T Consensus       118 ~l~lVT-~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          118 TVALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             eeEEEc-CCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence            444332 367999999742 3444443 33    346677777888888777664      3478888887753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.08  E-value=0.033  Score=42.02  Aligned_cols=146  Identities=9%  Similarity=-0.082  Sum_probs=79.5

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCce------eeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      ..+..++|+|+ +.+.+.  .+|.+.-.+..+.+.      -..+-. --....++.|.|+|.+.++  .||.|+-++..
T Consensus        41 ~~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46779999997 776666  667766666544221      111110 0112478999999986666  56999888764


Q ss_pred             CCCccccccc----ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce------eeeeEecCcccceeEEEEeeCC
Q 017194           89 MPASWRPLES----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC------LYKSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        89 ~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~  158 (375)
                      +.....-+..    -...=..+..+.+.|+|.+.++.  |+.++-....+..      ....+....-...+-+.|.+++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            3221111111    00011467899999999777776  7775443322111      0111110122234456688887


Q ss_pred             CcEEEEeecCCeE
Q 017194          159 PWEVISGGLDSKL  171 (375)
Q Consensus       159 ~~~l~~~~~d~~i  171 (375)
                      . ++++ . ++.+
T Consensus       194 ~-l~~v-~-~g~~  203 (236)
T 1tl2_A          194 T-LFGV-Q-GGKF  203 (236)
T ss_dssp             C-EEEE-E-TTEE
T ss_pred             c-EEEE-e-CCeE
Confidence            5 3333 3 6643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.06  E-value=0.096  Score=43.08  Aligned_cols=108  Identities=11%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc----cccCCCcceeEEEEcCC---CCeEEEE-e--CCCc
Q 017194           57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE----SYNYNKEEINQIVCNPK---SSFLACA-D--DGGD  126 (375)
Q Consensus        57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~-~--~dg~  126 (375)
                      .-.....|+|.|+|+.+++--..|.|++++..+++. ..+.    ...........++++|+   +..|++. +  .++.
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            345678999999998666655589999998665432 2221    11223567889999995   4455443 2  3445


Q ss_pred             EEEEeCcCc----------ee-eeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194          127 VKIIDIRQH----------CL-YKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       127 i~iwd~~~~----------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      |.-|.+..+          +. +..+..........|.|.|+|. ++++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence            666655431          11 1122211122356799999997 666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.00  E-value=0.16  Score=49.53  Aligned_cols=201  Identities=13%  Similarity=0.174  Sum_probs=119.2

Q ss_pred             EEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccC
Q 017194           22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY  101 (375)
Q Consensus        22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  101 (375)
                      -.+|. .+.+|--. ..++.|+|+++...++...- ..+|.-=.|-.+. .|+..+ +..|+-|++...  ..+.+.+..
T Consensus        72 IMnP~-~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~--s~P~k~fdR  144 (1630)
T 1xi4_A           72 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGE--SQPVKMFDR  144 (1630)
T ss_pred             ccCCC-cceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCC--CccHHHHhc
Confidence            45666 56666554 67899999998887777664 4466666675433 454444 678999999742  244444443


Q ss_pred             C----CcceeEEEEcCCCCeEEEEe-------CCCcEEEEeCcCceeeeeEecCcccceeEEEEee--CCCcEEEEeec-
Q 017194          102 N----KEEINQIVCNPKSSFLACAD-------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP--WKPWEVISGGL-  167 (375)
Q Consensus       102 ~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~-  167 (375)
                      |    ...|..-..+++.++++..+       ..|.+.+|..+.+ .-+.+. ||......+....  ....++..+.. 
T Consensus       145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie-gha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh-HhHhhhheeccCCCCCCceEEEEEEec
Confidence            3    45677788889999876543       3578899987643 334455 6655443333321  11112222221 


Q ss_pred             --CCeEEEeeCCCC---Ccce---EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          168 --DSKLVMWDFSKG---RPNK---IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       168 --d~~i~~wd~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                        .+++.+-++...   .+..   ......|+       -.......++.+++      ....+..-+.-|.|++||+.+
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~-------~~~~Dfpv~~~vs~------k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-------EAQNDFPVAMQISE------KHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCc-------ccccCcceEEEecc------ccCEEEEEecCceEEEEeccc
Confidence              257777777442   1100   00000000       00123455677777      677888889999999999999


Q ss_pred             cceee
Q 017194          240 ELNIS  244 (375)
Q Consensus       240 ~~~~~  244 (375)
                      +..++
T Consensus       290 ~~~i~  294 (1630)
T 1xi4_A          290 GTCIY  294 (1630)
T ss_pred             chhhh
Confidence            75544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.99  E-value=0.11  Score=43.19  Aligned_cols=93  Identities=9%  Similarity=0.052  Sum_probs=46.1

Q ss_pred             CCEEEEeCCC-CcEEEEeccc--Cce--eeEee-ecCccEEEEEEeCCCCeEEEEcC-C---------CeEEEEECCCCC
Q 017194           28 PGFVASSGED-GCICWFDLRS--KDV--QLVTD-VGNGPVTSLCFKSGNEDIIYVSS-G---------KEVKSFDVHMPA   91 (375)
Q Consensus        28 ~~~l~s~~~d-~~i~iw~~~~--~~~--~~~~~-~~~~~v~~l~~~~~~~~l~~~~~-d---------~~i~iwd~~~~~   91 (375)
                      +.+++.|+.+ ..+.++|+.+  .+-  +..+. ...... +++. -+++.++.|+. +         ..+.+||+.+.+
T Consensus        20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            6677777643 4688888864  221  22222 111111 2222 25666677665 2         468899988643


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCC
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDG  124 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  124 (375)
                       +..+..... .......+...+++.++.|+.+
T Consensus        98 -W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           98 -WVKLMSHAP-MGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             -EEECSCCCS-SCCSSEEEEEETTEEEEEECCC
T ss_pred             -EEECCCCCC-cccccceEEEECCEEEEEeCcC
Confidence             444333320 1111111122467777777754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.97  E-value=0.073  Score=40.22  Aligned_cols=107  Identities=8%  Similarity=-0.046  Sum_probs=63.0

Q ss_pred             cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee------eeeEec-CcccceeEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194          104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL------YKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      ..+..++|+|++.+.++  .+|.++-.+..+...      -..+-. +-. ...++.|.|+|. +.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~-LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGY-LYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSC-EEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCC-EEEe--CCCEEEEeCC
Confidence            36789999999986666  678777777644221      111210 111 247899999996 4555  6699988875


Q ss_pred             CCCCcceEEecCCCCCCCCCCcccC---CCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          177 SKGRPNKIVNFGLPENNGNAGQCYN---PAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      .+...-.-+...         ....   =..+..|.+.|      +|.+.++.  |+.++
T Consensus       115 P~~~~~~Wl~~a---------~~vg~~gw~~~~~lff~p------~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          115 PQSDTDNWIARA---------TEVGSGGWSGFKFLFFHP------NGYLYAVH--GQQFY  157 (236)
T ss_dssp             CCSTTCCHHHHS---------EEEECSSGGGEEEEEECT------TSCEEEEE--TTEEE
T ss_pred             CcCCCCceeccc---------cEeccCCCCceEEEEECC------CceEEEEe--CCcEE
Confidence            432211100000         0000   13568899988      78887777  77654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.13  Score=42.05  Aligned_cols=113  Identities=12%  Similarity=0.060  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEE--cCCCCeEEEE--eCCCcEEEEeCcCceeeeeEecCcc
Q 017194           71 EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC--NPKSSFLACA--DDGGDVKIIDIRQHCLYKSLRAGHS  146 (375)
Q Consensus        71 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~  146 (375)
                      ..++.++.||.|.-.|.++++..-.+..-  ...++....-  .+.+..++.+  +.||.|..++..+|.....+. . .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~-~-~   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS-I-R   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE-H-H
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec-c-c
Confidence            36778888999999998887654443321  0112211110  0112234443  589999999998885554443 1 1


Q ss_pred             ccee--EEEEe-----------eCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          147 SICS--SVQFI-----------PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       147 ~~v~--~~~~~-----------~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      ..+.  .+...           ..+. .+++|+.+|++...|+++|+.+..+..+
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cceeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            1110  01111           0233 6899999999999999999999998755

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.40  E-value=0.4  Score=41.25  Aligned_cols=106  Identities=6%  Similarity=0.041  Sum_probs=61.6

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc------CCCcceeEEEEcCC---CCeEEEEeC------
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN------YNKEEINQIVCNPK---SSFLACADD------  123 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~------  123 (375)
                      .....|+|.|+|+.+++-...+.|++++..+++. ..+..+.      .....+..++|+|+   +..|++...      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4567999999998776655445788887654432 2222111      12456789999995   555555442      


Q ss_pred             -------CCcEEEEeCcCc-------eee-eeEecCcccceeEEEEeeCCCcEEEEee
Q 017194          124 -------GGDVKIIDIRQH-------CLY-KSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus       124 -------dg~i~iwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                             ...|.-++....       +.+ ..+..........|+|.|+|. ++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence                   134555654321       111 122211123468999999997 555544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.27  E-value=0.63  Score=42.64  Aligned_cols=150  Identities=13%  Similarity=0.208  Sum_probs=82.5

Q ss_pred             CCEEEEeCCC----CcEEEEecccCceeeEe-e-----e-cCccEEEEEEeC-CCCeEEEEcCC------CeEEEEECCC
Q 017194           28 PGFVASSGED----GCICWFDLRSKDVQLVT-D-----V-GNGPVTSLCFKS-GNEDIIYVSSG------KEVKSFDVHM   89 (375)
Q Consensus        28 ~~~l~s~~~d----~~i~iw~~~~~~~~~~~-~-----~-~~~~v~~l~~~~-~~~~l~~~~~d------~~i~iwd~~~   89 (375)
                      +.+++.||.+    ..+.+||..+++-...- .     . ....-.+++..+ +++.++.|+.+      +.+.+||..+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            6777778753    46888888776543222 1     0 111112333333 67777777653      3588899886


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC--cEEEEeCcCceeeee-----EecCcccceeEEEEeeCCCcEE
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVKIIDIRQHCLYKS-----LRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      . .+..+...... ..-.+++...+++.++.|+.++  .+.+||+.+.+-...     +. .......++.+..+...++
T Consensus       478 ~-~W~~~~~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          478 R-EWSMIKSLSHT-RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFF-QNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             T-EEEECCCCSBC-CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGG-GSCCBSCEEEEETTTTEEE
T ss_pred             C-cEEECCCCCCC-cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCC-CcccceeEEEEeCCCCEEE
Confidence            4 24444333211 1112233324777888887544  699999887642211     11 1122223355555523377


Q ss_pred             EEeec--C-----CeEEEeeCCCCC
Q 017194          163 ISGGL--D-----SKLVMWDFSKGR  180 (375)
Q Consensus       163 ~~~~~--d-----~~i~~wd~~~~~  180 (375)
                      +.|+.  +     ..+..||+.+.+
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCc
Confidence            77765  2     468899998776

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.87  E-value=1.1  Score=41.51  Aligned_cols=319  Identities=10%  Similarity=0.019  Sum_probs=156.8

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      .|.++...++ +..|..|.. +-+..++..+++...........|.++....+|... .|+. +-+.+++..+++. ..+
T Consensus       192 ~i~~i~~d~~-~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~-~~~  266 (758)
T 3ott_A          192 FVNSLLEDTT-RQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPL-QHI  266 (758)
T ss_dssp             CEEEEEEETT-TTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCC-EEE
T ss_pred             eeEEEEEECC-CCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcE-EEE
Confidence            3778877766 454444443 347788877665322212224568888887777644 4554 4578888765432 111


Q ss_pred             cc-----ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe------cCcccceeEEEEeeCCCcEEEEe
Q 017194           97 ES-----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR------AGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        97 ~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      ..     .......|.++....++. |..|+..| +.++... . ....+.      ......|.++.-..+|.  |..|
T Consensus       267 ~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--lWiG  340 (758)
T 3ott_A          267 IHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGF--YWFG  340 (758)
T ss_dssp             CCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCC--EEEE
T ss_pred             EcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCC--EEEe
Confidence            11     011234688888877775 45555556 5544322 1 111111      01134688887777775  6666


Q ss_pred             ecCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          166 GLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +.+| +..++..+++  ....+....      .........|.++.-.+      +++ |..|+ ++-|..||..+++..
T Consensus       341 t~~G-l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~v~~i~~d~------~g~-lWigt-~~GL~~~~~~~~~~~  405 (758)
T 3ott_A          341 GANG-LIRFTDPAGERHDAIWYRMGD------KTYPLSHNRIRHIYEDK------EQQ-LWIAT-DGSINRYDYATRQFI  405 (758)
T ss_dssp             ETTE-EEEESCTTSSCCCCEEECTTC------SSSCCSCSCEEEEEECT------TSC-EEEEE-TTEEEEEETTTTEEE
T ss_pred             eCCc-ceeecccccccceeEEeccCC------cCCCCCCCceEEEEECC------CCC-EEEEe-CCcHhhcCcCCCcEE
Confidence            6554 6667655432  122222110      00011234577877765      455 44455 457999998875433


Q ss_pred             eccc-cc----CCCCCCceeeccccccee-ee-eeeecCCcce------eEee--eee---cC-CCccEEEEEEeecCCC
Q 017194          244 SRSK-ST----TKPLKGSQSTSKVNIRDA-EM-EILDQSGGKR------LHLD--YSV---GG-HTAAASCVAFSMFGER  304 (375)
Q Consensus       244 ~~~~-~~----~~~~~~~~~~s~~g~~~~-~~-~~~~~~~~~~------~~~~--~~~---~~-~~~~v~~~~~s~~~~~  304 (375)
                      .... ..    ....+.++...++|...+ +. +.....+...      ....  ..+   .+ ....|.++...   ++
T Consensus       406 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d---~~  482 (758)
T 3ott_A          406 HYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPD---NE  482 (758)
T ss_dssp             EEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEEC---TT
T ss_pred             EeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEc---CC
Confidence            2211 11    111233344445555433 21 1111111110      0110  011   11 12358888887   78


Q ss_pred             CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          305 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       305 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      |.+.+.++..+-|..+|..+.+...-.      .........+.++.... +|.+.+. +..| |..++
T Consensus       483 g~lWi~~~t~~Gl~~~d~~~~~~~~~~------~~~~~~~~~~~~i~~d~-~g~lWig-t~~G-l~~~~  542 (758)
T 3ott_A          483 GNVWVLLYNNKGIDKINPRTREVTKLF------ADELTGEKSPNYLLCDE-DGLLWVG-FHGG-VMRIN  542 (758)
T ss_dssp             SCEEEEETTCSSEEEEETTTTEEEEEC------TTTSCGGGCEEEEEECT-TSCEEEE-ETTE-EEEEC
T ss_pred             CCEEEEccCCCCcEEEeCCCCceEEec------CCCcCCCcccceEEECC-CCCEEEE-ecCc-eEEEe
Confidence            887663333345888898776432100      00011124566666655 6654443 4444 55554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.69  E-value=0.98  Score=41.37  Aligned_cols=109  Identities=10%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             CCCCeEEEEeCC----CcEEEEeCcCceeeeeE-e-----cCcccceeEEEEee-CCCcEEEEeecCC------eEEEee
Q 017194          113 PKSSFLACADDG----GDVKIIDIRQHCLYKSL-R-----AGHSSICSSVQFIP-WKPWEVISGGLDS------KLVMWD  175 (375)
Q Consensus       113 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~v~~~~~~~-~~~~~l~~~~~d~------~i~~wd  175 (375)
                      .++..++.|+.+    ..+.+||+.+++-...- .     ......-.+++..+ ++. +++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEEe
Confidence            456677777643    46888998766432211 0     00111112333343 555 777777543      577888


Q ss_pred             CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC--cEEEEeCCCc
Q 017194          176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--VVDVINIESE  240 (375)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~  240 (375)
                      ..+.+-...-...            .+..-.+.+...      ++++++.|+.++  .+.+||..+.
T Consensus       475 ~~t~~W~~~~~~p------------~~R~~h~~~~~~------~~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          475 MKTREWSMIKSLS------------HTRFRHSACSLP------DGNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTTTEEEECCCCS------------BCCBSCEEEECT------TSCEEEECCBCSSCSEEEEETTTT
T ss_pred             CCCCcEEECCCCC------------CCcccceEEEEc------CCEEEEECCCCCCCCEEEEECCCC
Confidence            8765322211111            011122333322      588888887654  6888998864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.61  E-value=0.44  Score=41.55  Aligned_cols=107  Identities=10%  Similarity=0.029  Sum_probs=70.2

Q ss_pred             ceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCc------ee-------eeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194          105 EINQIVCNPKSSFLACAD-DGGDVKIIDIRQH------CL-------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus       105 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      ....+..+|||+++++++ .+.++.++|++.-      +.       .....  -.......+|.++|. ...+-.-|..
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~-aYTtlfidSq  400 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGN-AYTTLFIDSQ  400 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSE-EEEEETTTTE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCc-eEeeeeecce
Confidence            345688999999988776 5778999998742      11       12222  234567889999984 6677778999


Q ss_pred             EEEeeCCCC----------CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec
Q 017194          171 LVMWDFSKG----------RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG  228 (375)
Q Consensus       171 i~~wd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~  228 (375)
                      |..|++...          ..+..+..+              ..+-.+..+......++|++|++...
T Consensus       401 vvkWni~~a~~~~~g~~~~~v~~k~dv~--------------YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKVNYIKQKLDVH--------------YQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCCCCEEEEEECS--------------SCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EEEEeccHHHHHhcCccCCeeeeccccc--------------cCCcccccCCCccCCCCccEEEEecc
Confidence            999999642          233344433              33444444433344568999988763

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=95.49  E-value=0.82  Score=37.26  Aligned_cols=197  Identities=13%  Similarity=0.116  Sum_probs=106.5

Q ss_pred             CCEEEEeCCCCcEEEEecccCce-------eeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEE---CCCCC---cc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDV-------QLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD---VHMPA---SW   93 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd---~~~~~---~~   93 (375)
                      ...+++.+.+|.|+--.+.+.+.       ...+. ...+.+..+........|+..+..|.++-..   +....   ..
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G   82 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG   82 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence            35778888888888766443211       11111 1234555555555556677677777655444   43221   11


Q ss_pred             cc---cccccCCCcceeEEE-EcC--CCCeEEEEeCCCcEEEEeCcCc-------eeeeeEecCcccceeEEEEeeCCCc
Q 017194           94 RP---LESYNYNKEEINQIV-CNP--KSSFLACADDGGDVKIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPW  160 (375)
Q Consensus        94 ~~---~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~  160 (375)
                      .+   +-.+.. ...|..+. ..+  +..+++..+.+|.++...+...       .....++ . ...+..+....... 
T Consensus        83 ~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e-~D~lv~~~~~~~~d-  158 (327)
T 3uc1_A           83 QHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-D-NDELVGAVLCSAGD-  158 (327)
T ss_dssp             EEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-T-TCCEEEEEEECTTC-
T ss_pred             EEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC-C-CCEEEEEEEecCCC-
Confidence            11   112222 34555544 332  5778999999999999887642       2222344 2 34555555555555 


Q ss_pred             EEEEeecCCeEEEeeCC--CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          161 EVISGGLDSKLVMWDFS--KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       161 ~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      .++..+..|.+..+...  .-.....-..+.+     .-.+.....|.++...+      ++..++..+..|.++.-.+.
T Consensus       159 ~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~-----~i~L~~~d~Vv~~~~~~------~~~~ll~~T~~G~~Krt~l~  227 (327)
T 3uc1_A          159 DLLLVSANGQSIRFSATDEALRPMGRATSGVQ-----GMRFNIDDRLLSLNVVR------EGTYLLVATSGGYAKRTAIE  227 (327)
T ss_dssp             EEEEEETTSEEEEEECCTTTSCCCCTTSBCEE-----SSCCCTTCCEEEEEECC------TTCEEEEEETTSEEEEEEGG
T ss_pred             EEEEEECCCeEEEEECcccccCcCCcCCCCee-----eecCCCCCEEEEEEEEC------CCCEEEEEeCCCcEEEEEHH
Confidence            58888889998888766  2111100000000     00001234566655544      46688888899988887765


Q ss_pred             C
Q 017194          239 S  239 (375)
Q Consensus       239 ~  239 (375)
                      .
T Consensus       228 e  228 (327)
T 3uc1_A          228 E  228 (327)
T ss_dssp             G
T ss_pred             H
Confidence            4

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.09  E-value=1.1  Score=36.19  Aligned_cols=138  Identities=11%  Similarity=0.120  Sum_probs=78.2

Q ss_pred             ecCCCCEEEEeC--CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC--------------CeEEEEEC
Q 017194           24 SRDRPGFVASSG--EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--------------KEVKSFDV   87 (375)
Q Consensus        24 ~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------------~~i~iwd~   87 (375)
                      +++ +.+|+-..  .++.|...+.+... ...+...  .  +--++++++.|+.+...              ..|+..++
T Consensus        22 ~~~-g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           22 CES-DGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEE-TTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEe-CCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            344 44544432  24556666654333 4444321  2  33557889988877643              36777777


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEe----CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD----DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      ...+. ..+..     ..  ...|++++++|+-..    .+..|+..++.. .....+. .+..    ..+++++++++.
T Consensus        96 dg~~~-~~l~~-----~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt-~~~~----~~~~~~g~~iy~  161 (302)
T 3s25_A           96 NGHGS-TVLDP-----DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIK-NHYL----FTCNTSDRYFYY  161 (302)
T ss_dssp             TSCCC-EEEEC-----SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEE-SSCC----CCSEEETTEEEE
T ss_pred             CCCcc-eEeec-----CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEe-CCCc----eEeeEECCEEEE
Confidence            75432 22222     11  236777888888765    344566666653 3344554 3332    456788886555


Q ss_pred             EeecCCeEEEeeCCCCCc
Q 017194          164 SGGLDSKLVMWDFSKGRP  181 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~  181 (375)
                      +.....+|...++..+..
T Consensus       162 t~~g~~~Iy~~~l~g~~~  179 (302)
T 3s25_A          162 NNPKNGQLYRYDTASQSE  179 (302)
T ss_dssp             ECTTTCCEEEEETTTTEE
T ss_pred             EeCCCceEEEEECCCCCE
Confidence            655567888888875543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.96  E-value=2.3  Score=39.41  Aligned_cols=193  Identities=9%  Similarity=0.097  Sum_probs=109.5

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      ..|.++....+ + .|..|..+| +..||..+.+...........|.++.. .++ .|..++.+ -+..+|..+++. ..
T Consensus        63 ~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~  135 (758)
T 3ott_A           63 TRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TS  135 (758)
T ss_dssp             SCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EE
T ss_pred             ceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EE
Confidence            45888777765 4 455566665 788998776432211112335777654 355 45556655 688889875432 22


Q ss_pred             ccc--ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-C----cccceeEEEEeeCCCcEEEEeecC
Q 017194           96 LES--YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-G----HSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        96 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      +..  .......|.++....++.+.+ ++.+ -+..++..+++.. .+.. .    ....|.++...+++. .|..|+. 
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~-~lWigt~-  210 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQ-CVWIGTE-  210 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTT-EEEEEEE-
T ss_pred             eccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCC-EEEEEEC-
Confidence            210  011234688888777776544 5554 4778887765532 2210 1    122478887777665 4555664 


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      +-+..+|..+++........             ...|.++...+      ++. |.+|+. +-+.+++..+..
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~-------------~~~i~~i~~d~------~g~-lWigT~-~Gl~~~~~~~~~  262 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFH-------------NNSIKSLALDG------NGD-LLAGTD-NGLYVYHNDTTP  262 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-------------EEEEEEEEECT------TCC-EEEEET-TEEEEECCTTSC
T ss_pred             CCCeEEcCCCCeEEeccCCC-------------CCeEEEEEEcC------CCC-EEEEeC-CceeEEecCCCc
Confidence            45888997765432211111             24577777765      455 444554 458888887643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.87  E-value=1.8  Score=37.86  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             EEEEcCCCeEEEEECCCCCcccccccccCC----------------------Cccee--EEEEcC---CCCeEEEEe-CC
Q 017194           73 IIYVSSGKEVKSFDVHMPASWRPLESYNYN----------------------KEEIN--QIVCNP---KSSFLACAD-DG  124 (375)
Q Consensus        73 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------~~~v~--~~~~~~---~~~~l~~~~-~d  124 (375)
                      +.+|+..|.|+|+-+.+++.+..+..+...                      .+...  .+++..   ||++|+.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            677888899999999887766655544310                      01111  233322   677888776 45


Q ss_pred             CcEEEEeCcCceeeeeEecCcccceeEEEEe--eCCCcEEEEeec
Q 017194          125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFI--PWKPWEVISGGL  167 (375)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~  167 (375)
                      ..|-..+++..++-+.+.......+-.++|-  |+.. +++.+++
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~-yv~~~~e  196 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTK-YVFANAE  196 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCC-EEEEEEC
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCcc-EEEecce
Confidence            6688888887776555553455677788876  6666 4665554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.81  E-value=1.7  Score=37.32  Aligned_cols=112  Identities=11%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceee--Eeee------cCccEEEEEEeCC---CCeEEEEcC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL--VTDV------GNGPVTSLCFKSG---NEDIIYVSS   78 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~------~~~~v~~l~~~~~---~~~l~~~~~   78 (375)
                      .+...-..-+.|+|.|+ ++++++-...+.|++++..+++...  .+..      .......|+|+|+   +..|..+..
T Consensus        21 ~~a~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           21 VILSNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             EEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEECCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            34333345678999999 7877766554578888765554322  2211      2456779999995   444444332


Q ss_pred             -------------CCeEEEEECCCCC-c---cc-cccccc-CCCcceeEEEEcCCCCeEEEEe
Q 017194           79 -------------GKEVKSFDVHMPA-S---WR-PLESYN-YNKEEINQIVCNPKSSFLACAD  122 (375)
Q Consensus        79 -------------d~~i~iwd~~~~~-~---~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  122 (375)
                                   ...|.-+++..+. .   .+ .+..+. ........++|.|||.+.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                         1355556553221 0   11 111121 1123468899999998766654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.42  E-value=3.1  Score=34.93  Aligned_cols=156  Identities=14%  Similarity=0.069  Sum_probs=76.4

Q ss_pred             CCceeEEEEecCCCCEEEEeCCCC----cEEEEecccCceeeEeee--------------cCccEEEEEEeCC--CCeEE
Q 017194           15 KATATCCIASRDRPGFVASSGEDG----CICWFDLRSKDVQLVTDV--------------GNGPVTSLCFKSG--NEDII   74 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~--------------~~~~v~~l~~~~~--~~~l~   74 (375)
                      ...|.+|++.|.+...|..+...|    .|... ...++.-..+..              ....|.++++.|.  ...+.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            356999999983234444444444    33332 222322111110              1125778888862  45566


Q ss_pred             EEcCCCeEEEEECCCCCccccccccc----------------CCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCcee
Q 017194           75 YVSSGKEVKSFDVHMPASWRPLESYN----------------YNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        75 ~~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      +++..+.|...+ ..++.++.+....                .....+.++.+.|. ...|+++..++.|...+ +.++.
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t  210 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD  210 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence            666556554443 2234444433211                11245788999883 44555555445454433 22322


Q ss_pred             eeeEecC----c--------ccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194          138 YKSLRAG----H--------SSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus       138 ~~~~~~~----~--------~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      -..+...    +        ...+.++.+.|.....+..+...+ |...
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s  258 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM  258 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence            2222100    0        124788999987433566666544 4443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.08  E-value=2.9  Score=33.65  Aligned_cols=141  Identities=10%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             EEEecCCCCEEEEeCCC--------------CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc--C--CCeE
Q 017194           21 CIASRDRPGFVASSGED--------------GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS--S--GKEV   82 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d--------------~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~--d~~i   82 (375)
                      --++++ +.+|+-+...              ..|+..++..++. ..+..  ..  +..|+++++.|+...  .  ...|
T Consensus        58 ~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeec--CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence            356787 6776655432              3577777776653 33321  22  236778888888775  2  3456


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      +.-++... ..+.+..   +  .+  ..++++++.|+-.+. ...|.+.++..+.....+. +   ... ..+.|+++++
T Consensus       132 y~~~~dGs-~~~~lt~---~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-~---~~~-~~~~P~g~~i  198 (302)
T 3s25_A          132 YRIRIDGE-EKKKIKN---H--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-C---NCY-KPVVLDDTNV  198 (302)
T ss_dssp             EEEETTSC-CCEEEES---S--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-S---CEE-EEEEEETTEE
T ss_pred             EEEECCCC-CeEEEeC---C--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-C---Ccc-ceeeecCCEE
Confidence            66666532 2222222   1  12  346778888886665 6788888887665443333 2   122 3466888854


Q ss_pred             EEEeecC-CeEEEeeCCCCC
Q 017194          162 VISGGLD-SKLVMWDFSKGR  180 (375)
Q Consensus       162 l~~~~~d-~~i~~wd~~~~~  180 (375)
                      +.+-..+ ..|..-++....
T Consensus       199 y~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          199 YYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEEEGGGTTEEEEECSSSCC
T ss_pred             EEEEcCCCcEEEEEECCCCC
Confidence            4444333 356666665443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.00  E-value=2.8  Score=33.31  Aligned_cols=183  Identities=8%  Similarity=-0.038  Sum_probs=97.0

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL   96 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~   96 (375)
                      .|..++....  ..++. . ||.|..|-......+..-......|..++-...- .++. . ||.|+.|-......+..-
T Consensus        25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            5666766533  23333 4 8889998765433222111123356666654332 2333 4 899999986643222211


Q ss_pred             ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194           97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF  176 (375)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~  176 (375)
                      ...   ...|..++...+  ..+.-. +|.|+.|-....-.+..-. .....|..++.....   .+.-. ||.|+.|-.
T Consensus        98 ~~~---~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~-~~~~~i~~i~~G~~~---~~~l~-~G~v~~wG~  166 (282)
T 3qhy_B           98 AEA---RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA-EAQSGVTALDGGVYT---ALAVK-NGGVIAWGD  166 (282)
T ss_dssp             GGG---SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSE---EEEEE-TTEEEEEEC
T ss_pred             ccc---CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc-cCCCCeEEEEcccCE---EEEEE-CCEEEEecC
Confidence            111   346777776544  333334 8999999765322111111 223456666554432   22333 799999987


Q ss_pred             CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .....+.... .            ....|..++...       ...++.  .+|.|..|-...
T Consensus       167 n~~gqlg~p~-~------------~~~~v~~i~~G~-------~hs~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          167 NYFGQTTVPA-E------------AQSGVDDVAGGI-------FHSLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             CTTSTTSCCG-G------------GGSSEEEEEECS-------SEEEEE--ETTEEEEEECCT
T ss_pred             CCCCCCCCce-e------------cCCCeEEEEecC-------CEEEEE--ECCeEEEEECCC
Confidence            6533222100 0            124577777653       344444  599999997664

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.69  E-value=3.9  Score=34.24  Aligned_cols=193  Identities=9%  Similarity=0.010  Sum_probs=89.2

Q ss_pred             CEEEEeCCCCcEEEEeccc-CceeeEe--eecCccEEEEEEeC-CCCeEEEEcCCC----eEEEEECCCCCccccccc--
Q 017194           29 GFVASSGEDGCICWFDLRS-KDVQLVT--DVGNGPVTSLCFKS-GNEDIIYVSSGK----EVKSFDVHMPASWRPLES--   98 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~-~~~~~~~--~~~~~~v~~l~~~~-~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~--   98 (375)
                      ..|..|...| +.+++... ++.-..+  ......|.+|++.| +...|.+++..+    .|... ...++.+..+..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence            4566777777 55555432 2222211  12346799999998 233455554444    34332 233444443322  


Q ss_pred             -ccC--------CCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceeeeeEec------------------Ccccce
Q 017194           99 -YNY--------NKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLRA------------------GHSSIC  149 (375)
Q Consensus        99 -~~~--------~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~v  149 (375)
                       +..        ....|.++++.|.  ...+.++...+.|...+- .++.-..+..                  .....+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence             111        1125778889872  456666666666655432 2222111110                  012357


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      .+|.+.|..+..+..+..++.|...+ ..++.-..+...................+..|++.|.     +...|.++...
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~-----~~~~l~vg~~~  253 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPA-----APDILYQQNHC  253 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSS-----STTEEEEEETT
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCC-----CCCEEEEEcCC
Confidence            88999885332455555555444332 2233322222110000000000000124788888873     34667776654


Q ss_pred             C
Q 017194          230 G  230 (375)
Q Consensus       230 g  230 (375)
                      +
T Consensus       254 g  254 (394)
T 3b7f_A          254 G  254 (394)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.97  E-value=7.1  Score=33.62  Aligned_cols=107  Identities=13%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             CceeEEEEecCCCC-EEEEeCCCCcEEEEecccCc---eeeEee---e------cCccEEEEEEeCC----CCeEEEEcC
Q 017194           16 ATATCCIASRDRPG-FVASSGEDGCICWFDLRSKD---VQLVTD---V------GNGPVTSLCFKSG----NEDIIYVSS   78 (375)
Q Consensus        16 ~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~---~~~~~~---~------~~~~v~~l~~~~~----~~~l~~~~~   78 (375)
                      ..-+.|+|.|+ +. .|+.+...|.|++++.....   .+..+.   .      .......|+|+|+    +...++-+.
T Consensus        14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            34567999999 64 34445667999999754221   122221   0      1356788999996    433333221


Q ss_pred             --C----------CeEEEEECCCC--C-----ccccccccc--CCCcceeEEEEcCCCCeEEEEeC
Q 017194           79 --G----------KEVKSFDVHMP--A-----SWRPLESYN--YNKEEINQIVCNPKSSFLACADD  123 (375)
Q Consensus        79 --d----------~~i~iwd~~~~--~-----~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  123 (375)
                        +          ..|.-|.+..+  .     ..+.+....  .....-..|+|.||+.+.++.+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              1          14555666432  1     011111111  11223578999999987666554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.82  E-value=7.3  Score=33.53  Aligned_cols=108  Identities=9%  Similarity=0.014  Sum_probs=59.7

Q ss_pred             ccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCCccccccc----cc-----CCCcceeEEEEcCC---CCeEEEE-eC-
Q 017194           59 GPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLES----YN-----YNKEEINQIVCNPK---SSFLACA-DD-  123 (375)
Q Consensus        59 ~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~-----~~~~~v~~~~~~~~---~~~l~~~-~~-  123 (375)
                      .....|+|.|++. .|+++...|.|++++.........+..    +.     ........++|+|+   +.+|++. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3557899999996 566667789999997542211111111    11     11456789999996   3343333 21 


Q ss_pred             -C----------CcEEEEeCcC----------ceeeeeEe-cCcccceeEEEEeeCCCcEEEEeec
Q 017194          124 -G----------GDVKIIDIRQ----------HCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus       124 -d----------g~i~iwd~~~----------~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                       +          ..|.-|.+..          .+.+..+. .........|+|.|||. ++++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence             1          1344455432          12222222 11123467899999997 5665554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.28  E-value=5.8  Score=31.47  Aligned_cols=143  Identities=14%  Similarity=0.101  Sum_probs=76.9

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc-ccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR-PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY  138 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  138 (375)
                      .|..++....  +.+... ||.|+.|-......+. +...    ...|..++..... .++. . ||.|+.|-....-.+
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~----~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gql   94 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAAT----QSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQT   94 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGG----GSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTT
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccC----CCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCC
Confidence            5666665432  333335 8999999866432222 1111    3467777765443 3333 4 899999976532111


Q ss_pred             eeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccC
Q 017194          139 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDK  218 (375)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  218 (375)
                      ..-. .-...|..++....   ..+.-. +|.|+.|-......+.... .            ....|..++...      
T Consensus        95 g~P~-~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~-~------------~~~~i~~i~~G~------  150 (282)
T 3qhy_B           95 TVPA-EARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVPA-E------------AQSGVTALDGGV------  150 (282)
T ss_dssp             CCCG-GGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCCG-G------------GGSSEEEEEECS------
T ss_pred             CCCc-ccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCCc-c------------CCCCeEEEEccc------
Confidence            1111 12346777766554   334444 9999999866432221100 0            124567776643      


Q ss_pred             CCCEEEEEecCCcEEEEeCCC
Q 017194          219 TNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       219 ~~~~l~~~~~dg~i~i~d~~~  239 (375)
                       ...++. . ||.|..|-...
T Consensus       151 -~~~~~l-~-~G~v~~wG~n~  168 (282)
T 3qhy_B          151 -YTALAV-K-NGGVIAWGDNY  168 (282)
T ss_dssp             -SEEEEE-E-TTEEEEEECCT
T ss_pred             -CEEEEE-E-CCEEEEecCCC
Confidence             233333 3 79999997764

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.75  E-value=12  Score=34.33  Aligned_cols=194  Identities=16%  Similarity=0.075  Sum_probs=97.6

Q ss_pred             EEE-EecCCCCEEEEe----CCC-CcEEEEecccCceeeE-ee-ecCc------cEEEEEEeCCCCeEEEEc--------
Q 017194           20 CCI-ASRDRPGFVASS----GED-GCICWFDLRSKDVQLV-TD-VGNG------PVTSLCFKSGNEDIIYVS--------   77 (375)
Q Consensus        20 ~~~-~~~~~~~~l~s~----~~d-~~i~iw~~~~~~~~~~-~~-~~~~------~v~~l~~~~~~~~l~~~~--------   77 (375)
                      .+. ++|+ +++++.+    |.| ..++++|+.+++.+.. +. .-+.      ....++|..+. .++.+.        
T Consensus       133 g~~~~~~~-~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          133 GVSNCFQN-PNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEECSSS-TTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBC
T ss_pred             ceeecCCC-CCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcC
Confidence            344 7888 6665533    222 4799999999886531 22 0001      11345787444 444432        


Q ss_pred             ---CCCeEEEEECCCCCcccccccccCCCcc-eeEEEEcCCCCe-----EEEEeC---CCcEEEEeCcC--ceeeeeEec
Q 017194           78 ---SGKEVKSFDVHMPASWRPLESYNYNKEE-INQIVCNPKSSF-----LACADD---GGDVKIIDIRQ--HCLYKSLRA  143 (375)
Q Consensus        78 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~-----l~~~~~---dg~i~iwd~~~--~~~~~~~~~  143 (375)
                         ....|+.|.+.+... .....+.+.... -.....++++++     +++.+.   ...+.+.|...  ++...... 
T Consensus       211 ~~~~~~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  288 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM-  288 (711)
T ss_dssp             TTSSBCEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS-
T ss_pred             cCCCCCEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec-
Confidence               124789998876532 111222222222 234455666653     343332   24466666553  33222222 


Q ss_pred             CcccceeEEEEeeCCCcEEEEe----------ecCCeEEEeeCCCCC-------cceE-EecCCCCCCCCCCcccCCCce
Q 017194          144 GHSSICSSVQFIPWKPWEVISG----------GLDSKLVMWDFSKGR-------PNKI-VNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~l~~~----------~~d~~i~~wd~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~v  205 (375)
                      ....   .+..+.++. +++..          ...+.|...|+.++.       .... +...            ....+
T Consensus       289 ~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l  352 (711)
T 4hvt_A          289 PSDA---TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT------------ANEVF  352 (711)
T ss_dssp             CTTC---EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC------------TTEEE
T ss_pred             CCcc---eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC------------CCCeE
Confidence            1111   223445554 44422          246678888887642       1222 2211            23456


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCc--EEEEeCCCc
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGV--VDVINIESE  240 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~  240 (375)
                      ..+.+..       +.++++...++.  |.++|+.++
T Consensus       353 ~~~~~~~-------~~l~~~~~~~~~~~l~~~~~~~g  382 (711)
T 4hvt_A          353 NFISTTK-------DRVFLATYDNVVAKVVTFTLENE  382 (711)
T ss_dssp             EEEEECS-------SCEEEEEEETTEEEEEEECEETT
T ss_pred             EEEEEEC-------CEEEEEEEECCEEEEEEEECCCC
Confidence            7788875       567777777764  667776554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.95  E-value=9.1  Score=31.86  Aligned_cols=71  Identities=10%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             CeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEEeec-CCccccCCCCEEEEEe-cCCcEEEEeCCCcceee
Q 017194          169 SKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP-DADMLDKTNKICVVAK-GDGVVDVINIESELNIS  244 (375)
Q Consensus       169 ~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  244 (375)
                      -+|.+||+.+.  +.++++.+....       ......+..+.+. ...-.+-++.++..+. ..+.|.++|+.+++.-.
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~-------~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swR  195 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRL-------VEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWN  195 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGG-------CCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCCceeEEEEECCHHh-------cccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEE
Confidence            36889999999  899888875211       1123467778876 1000000244555554 46789999999876654


Q ss_pred             cc
Q 017194          245 RS  246 (375)
Q Consensus       245 ~~  246 (375)
                      ..
T Consensus       196 v~  197 (381)
T 3q6k_A          196 VT  197 (381)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=88.70  E-value=7.6  Score=30.67  Aligned_cols=157  Identities=15%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEE---ECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCc
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSF---DVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR  133 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iw---d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  133 (375)
                      .+.+..+.-.....+|+..+..|.++--   ++...+. ..+  +.. ...|..+.... ++.+++..+.+|.++...+.
T Consensus        23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~-~~l--l~~-~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~   98 (276)
T 3no0_A           23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK-VSL--KSR-EEKIVGAFIREKFGNRLLLATKKGYVKKIPLA   98 (276)
T ss_dssp             CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE-CCC--SST-TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred             CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc-ccc--CCC-CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence            3455555554455566667777766543   3322211 112  322 45666664421 46789999999999998875


Q ss_pred             Cc------eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc-------ceEEecCCCCCCCCCCccc
Q 017194          134 QH------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-------NKIVNFGLPENNGNAGQCY  200 (375)
Q Consensus       134 ~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~  200 (375)
                      .-      .....++  ..+.+..+....... .++..+..|.+..+....-..       ...+.+.            
T Consensus        99 ~~~~~~~G~~~i~lk--egD~l~~~~~~~~~~-~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~------------  163 (276)
T 3no0_A           99 EFEYKAQGMPIIKLT--EGDEVVSIASSVDET-HILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE------------  163 (276)
T ss_dssp             GTTTCSTTEECSCCC--TTCCEEEEEECCSSC-EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC------------
T ss_pred             HhhhhcCCeEEEecC--CCCEEEEEEEeCCCC-EEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC------------
Confidence            43      2222333  234555555555444 588888899988877542111       1111111            


Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ....|..+...+      ++..++..+..|.++...+..
T Consensus       164 ~~d~vv~~~~~~------~~~~ll~~T~~G~~kr~~~~e  196 (276)
T 3no0_A          164 KNDETSGLRIWN------GEPYLLVITAKGRVKKISHEE  196 (276)
T ss_dssp             TTCCEEEEEEES------SCSEEEEEETTSCEEEEEGGG
T ss_pred             CCCEEEEEEEeC------CCCEEEEEeCCCcEEEeEHHH
Confidence            234455554444      466788888889888887764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.13  E-value=16  Score=34.97  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=30.0

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR   94 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~   94 (375)
                      ..+.+++..++..++++.+.|+++|+|++.+++...
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence            356777888888899999999999999999876543

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=87.87  E-value=9.8  Score=30.94  Aligned_cols=160  Identities=12%  Similarity=0.104  Sum_probs=94.4

Q ss_pred             CCceeEEEEecC--CCCEEEEeCCCCcEEEEecccCce-------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194           15 KATATCCIASRD--RPGFVASSGEDGCICWFDLRSKDV-------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        15 ~~~i~~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      .+.|.++...++  +..+++.++.+|.++--.+.....       ...+.. .+.+..+........|+..+..|.+..+
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf  172 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF  172 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence            345665544331  257899999999999988765322       122333 4555555555556678888889988888


Q ss_pred             ECC--C----CCc--ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-------e--eeEecCcccc
Q 017194           86 DVH--M----PAS--WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-------Y--KSLRAGHSSI  148 (375)
Q Consensus        86 d~~--~----~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~~  148 (375)
                      ...  .    ++.  ....-.+.. ...|.++...+++.+++..+..|.++.-.+..-..       +  ..+. .-.+.
T Consensus       173 ~~~~~eip~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~-~~~d~  250 (327)
T 3uc1_A          173 SATDEALRPMGRATSGVQGMRFNI-DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD-RRRGR  250 (327)
T ss_dssp             ECCTTTSCCCCTTSBCEESSCCCT-TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCC-TTTCS
T ss_pred             ECcccccCcCCcCCCCeeeecCCC-CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEec-CCCCe
Confidence            766  2    110  011111222 45577776666667889999999999887653211       1  1222 11334


Q ss_pred             eeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194          149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      +-.+....... .++..+.+|.+.-++...
T Consensus       251 lv~~~~~~~~~-~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          251 LVGALIVDDDS-ELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEEEECTTC-EEEEEEGGGCEEEEEGGG
T ss_pred             EEEEEEeCCCc-cEEEEcCCCeEEEEehhh
Confidence            55444444334 567777788877777643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.49  E-value=18  Score=34.59  Aligned_cols=35  Identities=26%  Similarity=0.138  Sum_probs=29.6

Q ss_pred             cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee
Q 017194          292 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ  329 (375)
Q Consensus       292 ~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  329 (375)
                      .+.+++..   ++..++++-+.|+++|+|++.+++...
T Consensus       237 ~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          237 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             CEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             eEEEEeec---CCCcEEEEEECCCEEEEEECCCCCeEe
Confidence            46667776   788899999999999999999997654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=83.10  E-value=17  Score=29.28  Aligned_cols=189  Identities=18%  Similarity=0.170  Sum_probs=102.6

Q ss_pred             CCEEEEeCCCCcEEEEecccCceee---------EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC---CCCCc---
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQL---------VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV---HMPAS---   92 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~---------~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~---~~~~~---   92 (375)
                      ..++++.+.+|.|+--.+.+.+...         .+.. .+.+..+........|+..+..|.++-+..   .....   
T Consensus         3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~   81 (307)
T 1zi0_A            3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR   81 (307)
T ss_dssp             CEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred             CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence            4678888999999877765432211         1222 344444444445556777777887655543   32111   


Q ss_pred             ccc---cccccCCCcceeEEEEc---CCCCeEEEEeCCCcEEEEeCcC-------ceeeeeEecCcccceeEEEEeeCCC
Q 017194           93 WRP---LESYNYNKEEINQIVCN---PKSSFLACADDGGDVKIIDIRQ-------HCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        93 ~~~---~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      ..+   +-.+.. ...|..+...   .++.+++..+.+|.++...+..       +.....+. .. +.+-.+.......
T Consensus        82 G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~-~~-d~lv~~~~~~~~~  158 (307)
T 1zi0_A           82 GRPIVNLLPLEQ-DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV-DG-DELIGVDLTSGED  158 (307)
T ss_dssp             CEEGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCC-TT-CCEEEEEEECTTC
T ss_pred             CeEhhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEEC-CC-CEEEEEEEeCCCC
Confidence            111   111222 3456555432   3456788889999999987752       22222333 23 4555555554444


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcc-------eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPN-------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV  232 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i  232 (375)
                       .++..+.+|.+..++...-...       ..+.+.            ....|.++...+      ++..+++.+..|..
T Consensus       159 -~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~------------~~d~Vv~~~~~~------~~~~ll~~T~~G~~  219 (307)
T 1zi0_A          159 -EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG------------EGDKVVSLIVPR------GDGAILTATQNGYG  219 (307)
T ss_dssp             -EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC------------TTCCEEEEECCC------SSCEEEEEETTSEE
T ss_pred             -EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC------------CCCEEEEEEEec------CCCEEEEEEcCCce
Confidence             5788888898888876432111       111111            234555555443      35567888888888


Q ss_pred             EEEeCCC
Q 017194          233 DVINIES  239 (375)
Q Consensus       233 ~i~d~~~  239 (375)
                      +-.++..
T Consensus       220 Kr~~~~e  226 (307)
T 1zi0_A          220 KRTAVAE  226 (307)
T ss_dssp             EEECGGG
T ss_pred             EEEEHHH
Confidence            8777643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=83.00  E-value=19  Score=29.95  Aligned_cols=136  Identities=10%  Similarity=0.064  Sum_probs=83.1

Q ss_pred             cEEEEecccC--ceeeEeeec------CccEEEEEEe---CC----CCeEEEE-cCCCeEEEEECCCCCcccccccccCC
Q 017194           39 CICWFDLRSK--DVQLVTDVG------NGPVTSLCFK---SG----NEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYN  102 (375)
Q Consensus        39 ~i~iw~~~~~--~~~~~~~~~------~~~v~~l~~~---~~----~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~  102 (375)
                      .|.+||+.+.  +.++++.-.      ...+..+++.   |.    +.+...+ +...-|.|+|+.+++.++........
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5889999999  888777542      3567888887   22    2233322 33578999999988766554321111


Q ss_pred             ---------------CcceeEEEEcCC----CCeEEEEeCCCcEEEEeCcC-----c---eeeeeEecCcc---cceeEE
Q 017194          103 ---------------KEEINQIVCNPK----SSFLACADDGGDVKIIDIRQ-----H---CLYKSLRAGHS---SICSSV  152 (375)
Q Consensus       103 ---------------~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~-----~---~~~~~~~~~~~---~~v~~~  152 (375)
                                     ...+..++++|+    ++.|......+ -++|.+.+     .   ..++.+-  ..   ..-..+
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G--~kg~~s~~~~~  280 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLG--NRGKYNDAIAL  280 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEE--ECCTTCCEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEee--ecCCCCCcceE
Confidence                           136788999997    67777766544 23443331     1   1222222  22   233345


Q ss_pred             EEe-eCCCcEEEEeecCCeEEEeeCCC
Q 017194          153 QFI-PWKPWEVISGGLDSKLVMWDFSK  178 (375)
Q Consensus       153 ~~~-~~~~~~l~~~~~d~~i~~wd~~~  178 (375)
                      ++. .+|. ++++--....|..|+..+
T Consensus       281 ~~D~~~G~-ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          281 AYDPKTKV-IFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred             EEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence            665 4554 677777888999999875

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=82.90  E-value=16  Score=28.87  Aligned_cols=205  Identities=8%  Similarity=0.040  Sum_probs=113.9

Q ss_pred             CeeeecCC---CceeEEEEecCCCCEEEEeCCCCcEEEEe---cccCceeeEeeecCccEEEEEEeC--CCCeEEEEcCC
Q 017194            8 PRRLRGHK---ATATCCIASRDRPGFVASSGEDGCICWFD---LRSKDVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSG   79 (375)
Q Consensus         8 ~~~l~~h~---~~i~~~~~~~~~~~~l~s~~~d~~i~iw~---~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d   79 (375)
                      ++..++|.   +.+..+..... ...|+.-+.+|.++--.   +..+.....+. ....|..+.. +  +..+++.++.+
T Consensus        13 ir~~~g~~~~gD~~~~~~~~~t-~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~   89 (276)
T 3no0_A           13 IIPVEELPLEKAPVVNILRVPF-TEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKK   89 (276)
T ss_dssp             EEEGGGCCSSCCCEEEEEEEET-TSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETT
T ss_pred             eeeccCCCCCCCeEEEEEEECC-CCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCC
Confidence            34455653   34555554444 34555566677665433   33221111133 3566666644 4  46789999999


Q ss_pred             CeEEEEECCCCC---cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC---------ceeeeeEecCccc
Q 017194           80 KEVKSFDVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---------HCLYKSLRAGHSS  147 (375)
Q Consensus        80 ~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~  147 (375)
                      |.++-..+..-.   .......+.. ...+..+........++..+..|.+..+....         |.....+.  ...
T Consensus        90 G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~--~~d  166 (276)
T 3no0_A           90 GYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE--KND  166 (276)
T ss_dssp             SEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTC
T ss_pred             CEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC--CCC
Confidence            999999875421   0001111222 34566665555666788888999988887642         22222333  235


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-------cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-------PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                      .|.++...+++. .++..+..|.++...+..-.       -+..+.              ....+..+....      +.
T Consensus       167 ~vv~~~~~~~~~-~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~--------------~~~~lv~~~~~~------~~  225 (276)
T 3no0_A          167 ETSGLRIWNGEP-YLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG--------------TKDTLVDLIPIK------EE  225 (276)
T ss_dssp             CEEEEEEESSCS-EEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC--------------SSSCEEEEEEES------SE
T ss_pred             EEEEEEEeCCCC-EEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc--------------CCCcEEEEEEeC------CC
Confidence            566665555555 68888899998888764321       111111              123343333322      34


Q ss_pred             CEEEEEecCCcEEE--EeCCC
Q 017194          221 KICVVAKGDGVVDV--INIES  239 (375)
Q Consensus       221 ~~l~~~~~dg~i~i--~d~~~  239 (375)
                      ..++..+.+|.+..  ++...
T Consensus       226 ~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          226 VELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEEEEETTSCEEEEEEEGGG
T ss_pred             CEEEEEcCCCeEEEeeeCHHH
Confidence            56777777888777  77654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	375
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 6e-17
 Identities = 43/317 (13%), Positives = 106/317 (33%), Gaps = 18/317 (5%)

Query: 11  LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN 70
           L GH++  T  I        + S+ ED  I  +D  + D +         V  + F    
Sbjct: 13  LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 71  EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130
           + +   S+   +K +D       R +  +++N   ++ +   P    +  A     +K+ 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGL 189
           +++     K+   GH      V+        + S   D  + +W  +      ++     
Sbjct: 129 EVQTGYCVKTFT-GHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKECKAELREHRH 186

Query: 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST 249
                +     + + +      +     K     +    D  + + ++ + + +      
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 250 TKPLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 304
              ++G    S          D  + + D    + +    ++  H    + + F    + 
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFH---KT 300

Query: 305 GKYLISGGNDKLVKVWD 321
             Y+++G  D+ VKVW+
Sbjct: 301 APYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
             L GH       +       F+ S  +D  +  +D ++K      +     VTSL F  
Sbjct: 241 MTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299

Query: 69  GNEDIIYVSSGKEVKSFD 86
               ++  S  + VK ++
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
           Y++ GH +  + V F         ++S   D  +KVWD       +T
Sbjct: 11  YALSGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERT 54

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 5e-14
 Identities = 46/321 (14%), Positives = 94/321 (29%), Gaps = 28/321 (8%)

Query: 5   EAKPRR-LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTS 63
           + + RR LRGH A         D    + S+ +DG +  +D  + +      + +  V +
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102

Query: 64  LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
             +      +           +++        +                   + +  +  
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162

Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 183
                + DI       +       + S       + +  +SG  D+   +WD  +G   +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF--VSGACDASAKLWDVREGMCRQ 220

Query: 184 IVNFGLPENNGNAGQCYNPAFV---HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240
                     G+        F    +A A    D   +   +    +         I   
Sbjct: 221 TF-------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273

Query: 241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 300
            ++S SKS    L G          D    + D     R      + GH    SC+  + 
Sbjct: 274 TSVSFSKSGRLLLAGYD--------DFNCNVWDALKADRAG---VLAGHDNRVSCLGVT- 321

Query: 301 FGERGKYLISGGNDKLVKVWD 321
             + G  + +G  D  +K+W+
Sbjct: 322 --DDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 272 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 331
           +D  G  ++    ++ GH A    + +       + L+S   D  + +WD      V   
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWG---TDSRLLVSASQDGKLIIWDSYTTNKVHAI 93

Query: 332 INNDLLIKNINLNKKVNWLC 351
                 +         N++ 
Sbjct: 94  PLRSSWVMTCAYAPSGNYVA 113

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 1e-10
 Identities = 28/180 (15%), Positives = 56/180 (31%), Gaps = 22/180 (12%)

Query: 20  CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-------GPVTSLCFKSGNED 72
               S     ++A+   D  +  +D  +  +    D  N         V S+ F    + 
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268

Query: 73  IIYVSSGKEVKSFDV---------HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
           ++  S  + VK +++           P S     +Y  +K+ +  +       ++     
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328

Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE-----VISGGLDSKLVMWDFSK 178
              V   D +       L+ GH +   SV                +G  D K  +W + K
Sbjct: 329 DRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 50/382 (13%), Positives = 114/382 (29%), Gaps = 70/382 (18%)

Query: 10  RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-------------- 55
           +   H +   C   S D   ++A+        +       V  ++D              
Sbjct: 57  KSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 56  ---VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN 112
                +  + S+CF   + D  ++++G E +   +    + + +     ++++I  +   
Sbjct: 116 SSPSSDLYIRSVCF---SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 172

Query: 113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172
           P    L        V+I D+R                ++V   P     + +G LD  + 
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSL--TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 232
           +WD   G   + ++       G+    Y+  F             +  +  V    D  V
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVF------------TRDGQSVVSGSLDRSV 278

Query: 233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 292
            + N+++  N S SK+                                  + +  GH   
Sbjct: 279 KLWNLQNANNKSDSKTPNSG----------------------------TCEVTYIGHKDF 310

Query: 293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 352
              VA +   +  +Y++SG  D+ V  WD      +     +   + ++ +    +    
Sbjct: 311 VLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 353 TPTESENLVVCDTSKVVKVYSI 374
                            +++  
Sbjct: 368 YNV----FATGSGDCKARIWKY 385

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 4e-09
 Identities = 33/327 (10%), Positives = 77/327 (23%), Gaps = 11/327 (3%)

Query: 8   PRR--LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
           P+R  LRGH  +   C+   D   +V +  +D  I  +D  +K   L     +G V +L 
Sbjct: 3   PQRTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

Query: 66  FKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125
           +  G   I+   S                 +   + +      IV      ++       
Sbjct: 61  YAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 185
            + +  + +         G       V   P +    +         +   S      + 
Sbjct: 119 TLHVWKLPKESSVPDH--GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176

Query: 186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 245
                             ++ +            ++            +   + E     
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236

Query: 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 305
                                +        G            H    S +      +  
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN- 295

Query: 306 KYLISGGNDKLVKVWDCSRFQGVQTSI 332
             ++  G++    +++    + V  +I
Sbjct: 296 --ILVSGSENQFNIYNLRSGKLVHANI 320

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 93  WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152
                 ++Y+   ++ I     S  +  +       I ++R   L  +     +    SV
Sbjct: 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330

Query: 153 QFIPWKPWEVISGGLDSKLVMW--DFS 177
            F       V +   D +  +   DFS
Sbjct: 331 NFKG--KTLVAAVEKDGQSFLEILDFS 355

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 7e-09
 Identities = 41/316 (12%), Positives = 79/316 (25%), Gaps = 24/316 (7%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFK 67
           +   GH    T   +S D    + S+  +G I  +D+ +    ++  DV    +T +   
Sbjct: 6   QVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 68  SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127
           S   D+  VS    +K                N    +   +  +        A      
Sbjct: 65  S-KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY---- 119

Query: 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 187
               I  +   K      S   S V     K +  + G      V               
Sbjct: 120 --KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247
              E    A        V            +      VA    +    +           
Sbjct: 178 HPAEITSVAFSNNGAFLVA-------TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 230

Query: 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 307
           S +       + S     D  + + + +      +        ++ + V +         
Sbjct: 231 SWSPDNVRLATGSL----DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL----NETT 282

Query: 308 LISGGNDKLVKVWDCS 323
           ++S G D  +K W+  
Sbjct: 283 IVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
           GH  A + ++ S     GK L S   +  +  WD S     + 
Sbjct: 10  GHNKAITALSSS---ADGKTLFSADAEGHINSWDISTGISNRV 49

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 28/297 (9%), Positives = 75/297 (25%), Gaps = 34/297 (11%)

Query: 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV 162
            + I  +  +     L  AD  G +   DI      +     H+++ + ++         
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 222
           +S   D  L +        +         ++   G   +     A+A     +   ++  
Sbjct: 72  VSW--DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

Query: 223 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 282
                       + + ++            +   + +         +    +        
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 283 DYSVGGHTAAASCVAFSMFGER------------------------GKYLISGGNDKLVK 318
           + +    T  +  V                                   L +G  D  V 
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375
           VW+      +    ++ ++IK  +    VN +         +V       +K +++ 
Sbjct: 250 VWN------MNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNVP 298

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 42/353 (11%), Positives = 90/353 (25%), Gaps = 63/353 (17%)

Query: 8   PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK 67
           P+ L+GH      C+        + S  +D  +  +   +           G V S   +
Sbjct: 9   PKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 68  SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS------------ 115
                        +V + +           +       +++      S            
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 116 ---------------------SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154
                                  +        VK+ D        +L+ GH++       
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRV---YS 182

Query: 155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 214
           + +    V+SG LD+ + +WD         ++      +  +G       +       + 
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNILV------SG 233

Query: 215 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 274
             D T KI  +  G  +  +       +        K    + S       D  +++ D 
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD------DGTVKLWDL 287

Query: 275 SGGKRLH--LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL----VKVWD 321
             G+ +   +    GG       +  S           G  +      + V D
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRAS---NTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
             L+GH                V S   D  I  +D+ + +            + +  K 
Sbjct: 171 HTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227

Query: 69  GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
               ++  ++   VK +D+      + L+  N ++  +  +  N      +  D  G VK
Sbjct: 228 NI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD--GTVK 283

Query: 129 IIDIRQHCLYKSLRA----GHSSICSSVQFIPWKPWEVI---SGGLDSKLVMWDFSK 178
           + D++     ++L      G   +   ++    K    +   +G  ++KL++ DF  
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 288 GHTAAA-SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
           GH     +C+ F      G  ++SG +D  +KVW     + ++T
Sbjct: 14  GHDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAVTGKCLRT 52

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 45/349 (12%), Positives = 99/349 (28%), Gaps = 48/349 (13%)

Query: 19  TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDIIYV 76
           +C   ++DR   +A    +  +  ++        V ++   NG VT + +   +  I+  
Sbjct: 11  SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 77  SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136
            + +    + +    +W+P             +   P     A       + I    Q  
Sbjct: 70  GTDRNAYVWTLKGR-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 137 LYKSLRAGHSSICSSVQFIPW----------------KPWEVISGGLDSKLVMWDFSKGR 180
            +   +     I S+V  + W                + +      ++ +     +    
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 181 PNKIVNFGLPENNG--------------------------NAGQCYNPAFVHAIAIPDAD 214
           P   + F    + G                          +A +    A + +  +P   
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248

Query: 215 MLDKTNKICVVAKGDGVVDVINIESELN-ISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 273
           +   T    V A  D    +   +S    +S       P + SQ       R   ++   
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 274 QSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWD 321
            S G           H  + S ++    G+ +     + G D  + +WD
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 10/123 (8%), Positives = 34/123 (27%), Gaps = 1/123 (0%)

Query: 60  PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA 119
           P++   +      I    +  EV  ++      W  +     +  ++  +   P S+ + 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG 179
                 +  +  ++      +L     +  +          +   G     + +  F + 
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127

Query: 180 RPN 182
              
Sbjct: 128 NDW 130

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324
            + E+ I ++SG K + + + +  H    + V ++        +++ G D+   VW    
Sbjct: 27  NNHEVHIYEKSGNKWVQV-HELKEHNGQVTGVDWA---PDSNRIVTCGTDRNAYVWTLKG 82

Query: 325 FQ 326
             
Sbjct: 83  RT 84

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 99  YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPW 157
           +++  E I+    N   + +A   +  +V I +      +       H+   + V + P 
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 158 KPWEVISGGLDSKLVMWDF 176
               +++ G D    +W  
Sbjct: 63  SNR-IVTCGTDRNAYVWTL 80

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 37/315 (11%), Positives = 90/315 (28%), Gaps = 29/315 (9%)

Query: 9   RRLRGHKATATC--CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF 66
           +R+     T+    C+   D+   + S   D  I  +D  + + + +     G V  L +
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 67  KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126
                               V +                   +     +  +        
Sbjct: 64  DERVIITGS-------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116

Query: 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186
           + + D+         R       ++V  + +    ++S   D  + +W+ S         
Sbjct: 117 IAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF----- 170

Query: 187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 246
             +   NG+        +   + +  +   D T ++  +  G  +  +   E  +   R 
Sbjct: 171 --VRTLNGHKRGIACLQYRDRLVV--SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 226

Query: 247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
            +            KV    A ++    +G   L    ++  H+     + F        
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR---TLVEHSGRVFRLQFD-----EF 278

Query: 307 YLISGGNDKLVKVWD 321
            ++S  +D  + +WD
Sbjct: 279 QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
             +    C+ +       + ++SG  D  +K+WD +  +  + 
Sbjct: 13  ETSKGVYCLQYD-----DQKIVSGLRDNTIKIWDKNTLECKRI 50

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 30/339 (8%), Positives = 75/339 (22%), Gaps = 17/339 (5%)

Query: 3   DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGPV 61
           D                      D          +G  +  +D R+   +   +   G V
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE-NLGNV 88

Query: 62  TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA 121
            ++      +  +  +   E+ + D+          S      +      +   ++    
Sbjct: 89  FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 148

Query: 122 DDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWE--VISGGLDSKLVMWDFS 177
             G     +    H   +        ++  S      +      +      S     D  
Sbjct: 149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208

Query: 178 KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 237
               +  V           G       V      +A   D  +     +  +       +
Sbjct: 209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 268

Query: 238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 297
              L  S    +        +  +       +   D    K       V       + + 
Sbjct: 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-------VTEVKNNLTDLR 321

Query: 298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 336
            S      K ++   +D  +  +   + +  +T +  D 
Sbjct: 322 LSA---DRKTVMVRKDDGKIYTFPLEKPEDERT-VETDK 356

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 6e-06
 Identities = 37/320 (11%), Positives = 74/320 (23%), Gaps = 14/320 (4%)

Query: 8   PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV---GNGPVTSL 64
           P   R      T               G+   +   D     V  V      G+  VT++
Sbjct: 13  PSTQRNF---TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTV 69

Query: 65  CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG 124
            F S  +   Y+ SG E     V      +   S   N +   Q++  P S  ++   +G
Sbjct: 70  KF-SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD-ISWDFEG 127

Query: 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI 184
             + ++   +      +     +    V     +              M     G     
Sbjct: 128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 187

Query: 185 VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 244
                  +  +       +FV  +                                +   
Sbjct: 188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 247

Query: 245 RSKSTTKPLKGSQSTSKVNI---RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF 301
           +          S   S+       DA + + D +  K +                   + 
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ---KWTLDKQQLGNQQVGVV 304

Query: 302 GERGKYLISGGNDKLVKVWD 321
                 +IS   D  +  ++
Sbjct: 305 ATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 36/328 (10%), Positives = 83/328 (25%), Gaps = 30/328 (9%)

Query: 58  NGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116
               T L +      I Y       V+  D         ++   +    +  +  +P   
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 117 --FLACADDGGDVKIIDIRQHCLYKSL-------RAGHSSICSSVQFIPWKPWEVISGGL 167
             +L   D+ G V +          S+           +   S + +        + G  
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 168 -DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226
            D+  V   +  G     V+      N    +   P     +    + +  +        
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--- 193

Query: 227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 286
                       S+    +  S  + ++ S  + +  I       +    GK       +
Sbjct: 194 ---------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244

Query: 287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 346
                      F++     +   + G D  ++VWD +  + VQ                 
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK-------WTLDKQQLG 297

Query: 347 VNWLCTTPTESENLVVCDTSKVVKVYSI 374
              +    T +  ++       +  Y +
Sbjct: 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 30/325 (9%), Positives = 73/325 (22%), Gaps = 35/325 (10%)

Query: 30  FVASSGEDGCICWFDLRSKDVQ---LVTDVGNGPVTSLCFKSGNEDIIYVSS--GKEVKS 84
           ++ +      +   D     V     + D G  P       +    I Y +    + +  
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTP-MVPMV-APGGRIAYATVNKSESLVK 60

Query: 85  FDV--HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142
            D+          L +     + +     +P    LA  +    +++          +L 
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 143 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202
              +         P +   +      SKL                G    +         
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAE 178

Query: 203 AFVHAIAIPDADMLDKTNKICV-------------VAKGDGVVDVINIESELNISRSKST 249
            +     +   +  + +  +                      +  +++E+     R    
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

Query: 250 TKPLKGSQSTSKVNIR----DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 305
                 S + +    R       +E  D      +           +   V  S     G
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK----RVPLPHSYYSVNVS---TDG 291

Query: 306 KYLISGGNDKLVKVWDCSRFQGVQT 330
             +  GG    +  +D    +    
Sbjct: 292 STVWLGGALGDLAAYDAETLEKKGQ 316

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 40/319 (12%), Positives = 76/319 (23%), Gaps = 36/319 (11%)

Query: 58  NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN--KEEINQIVCNPKS 115
              V ++   S     +Y      VK +D+  P +  P+   +       I      P  
Sbjct: 51  GEVVCAVTI-SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 116 SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD 175
             L    +   + I D+             S+       I        S   D  + +WD
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 235
                                 Q     F           +            D  V   
Sbjct: 170 LHN-------------------QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210

Query: 236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 295
           ++     + +   T++        +   +         +         Y +  H +    
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS 270

Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 355
           + F+     GK+ +S G D L+  W                 I     +  V     +  
Sbjct: 271 LKFA---YCGKWFVSTGKDNLLNAWR----------TPYGASIFQSKESSSVLSCDISVD 317

Query: 356 ESENLVVCDTSKVVKVYSI 374
             + +V     K   VY +
Sbjct: 318 -DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 8/156 (5%)

Query: 20  CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79
            CI   +    + + G D  +  +DLR        D     + SL +    E +      
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TSQIFSLGYCPTGEWLAVGMES 245

Query: 80  KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK 139
             V+   V+ P  ++     + ++  +  +       +         +            
Sbjct: 246 SNVEVLHVNKPDKYQ----LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301

Query: 140 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD 175
                 SS   S        + +++G  D K  +++
Sbjct: 302 QS--KESSSVLSCDISVDDKY-IVTGSGDKKATVYE 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 29/325 (8%), Positives = 73/325 (22%), Gaps = 25/325 (7%)

Query: 11  LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVG-NGPVTSLCFK 67
            +  K   +       +   +  +  DG +  +     +K+V L+  +    P+    F 
Sbjct: 7   EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 68  SGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG 124
              +  IYV +                        N     I +   +   +        
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKI 184
                         K+L + ++ + + +  +      +I G  +S++  +       +  
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 185 VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 244
                            P             +D    +          +     +     
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGY---ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242

Query: 245 RSKSTTKPLKGSQSTSK--------VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 296
            +   T       S               D  +   +    K++        +  +   +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN--FAKFNEDSVVKI 300

Query: 297 AFSMFGERGKYLISGGNDKLVKVWD 321
           A S        L    +D   K   
Sbjct: 301 ACS-----DNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 7/77 (9%), Positives = 17/77 (22%), Gaps = 9/77 (11%)

Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 347
                 S +           L+    D  + V+             N  L++++     +
Sbjct: 9   APKDYISDIKII---PSKSLLLITSWDGSLTVYK------FDIQAKNVDLLQSLRYKHPL 59

Query: 348 NWLCTTPTESENLVVCD 364
                       + V  
Sbjct: 60  LCCNFIDNTDLQIYVGT 76

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 27/327 (8%), Positives = 82/327 (25%), Gaps = 34/327 (10%)

Query: 30  FVASSGEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKSGNEDIIYVSS--GKEVKSFD 86
           ++  +     +   D+ S  V     + +     +    + +    YV +    ++   D
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM-APDNRTAYVLNNHYGDIYGID 68

Query: 87  VHM---PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD------------VKIID 131
           +                     +     +P    +    +               +++  
Sbjct: 69  LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS 128

Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
                  K +R         +          ++G    K+ +          + N+    
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 192 NNGNAGQCYNPAFVHAIAIPDADM---LDKTNKICVVAKGDGVVDVINIESELNISR--- 245
            +      + P                     +    A        +++++    ++   
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248

Query: 246 --SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 303
             ++     L+  +  +++      +   D    K +              CVAF    +
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK----AANLDHTYYCVAFD---K 301

Query: 304 RGKYLISGGNDKLVKVWDCSRFQGVQT 330
           +G  L  GG    + V++    + V+ 
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKN 328

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 35/313 (11%), Positives = 81/313 (25%), Gaps = 34/313 (10%)

Query: 9   RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
           + + GH    T    +      + S   DG I  +   S     +    +  + SL    
Sbjct: 7   KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSK 56

Query: 69  GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
             E      S  +    +      +           +    V       L      GD+ 
Sbjct: 57  AQE--YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 188
                         + +       +    + +++    +   L     +K     I    
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 248
                G+         + +  +  +    +T+KI  ++           E E ++  + S
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 308
                      + + I   +         K +    ++  H    + + +         L
Sbjct: 235 ---------LDTNIFIYSVK------RPMKIIK---ALNAHKDGVNNLLWE----TPSTL 272

Query: 309 ISGGNDKLVKVWD 321
           +S G D  +K W+
Sbjct: 273 VSSGADACIKRWN 285

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 32/273 (11%), Positives = 65/273 (23%), Gaps = 16/273 (5%)

Query: 59  GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL 118
           G    L   +   D I   +G  V +  V         E Y  +  +      +P   + 
Sbjct: 18  GTAVVLGN-TPAGDKIQYCNGTSVYTVPVGSL---TDTEIYTEHSHQTTVAKTSPSGYYC 73

Query: 119 ACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 177
           A  D  G+V+I D      + K+     S     + +                       
Sbjct: 74  ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI-----------AAVGE 122

Query: 178 KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 237
                  V       +         A       P       +                  
Sbjct: 123 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 182

Query: 238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 297
            +    ++   + +        +        +      G K    +     + A +  V 
Sbjct: 183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 242

Query: 298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
              +   G  + S   DK +K+W+ +  +  +T
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 88  HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS 147
                         +   +  +  +P  + +A A     +KI ++    + K++    + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP-VGTR 281

Query: 148 ICSSVQFIPWKPWEVISGGLDSKLVMWD 175
           I      I W    ++S   +  +   +
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVN 309

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 8/91 (8%)

Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 347
            H A    V+         + +S   D  +KVWD            +     + +    V
Sbjct: 12  AHDADIFSVSAC-----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 348 NWLCTTPTESEN---LVVCDTSKVVKVYSIS 375
           + L     ++     +     S  +  Y I+
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	375
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.73
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.45
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.44
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.43
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.4
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.33
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.3
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.17
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.07
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.6
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.53
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.52
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.37
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.95
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.93
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.93
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.82
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.73
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.61
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.42
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.36
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.32
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.22
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.06
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.99
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.9
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.14
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.03
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.44
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.13
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.9
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.64
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.05
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.69
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.25
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	88.1
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	83.56
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	81.41

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-50  Score=334.42  Aligned_cols=287  Identities=17%  Similarity=0.271  Sum_probs=250.2

Q ss_pred             CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-----eEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194            7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-----LVTDVGNGPVTSLCFKSGNEDIIYVSSGKE   81 (375)
Q Consensus         7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~   81 (375)
                      .+.++ +|.+.|+|++|+|+ +++||+|+ ||.|+|||+.++...     .....|...|.+++|+|++++|++++.|+.
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             EEEEC-CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            34444 69999999999999 89999998 799999999876432     223468899999999999999999999999


Q ss_pred             EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194           82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      |++||+.... ......+..|...+..++|+|++.++++++.|+.|++||+.+++...... .|...+.+++|++++. .
T Consensus       121 i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~l~~s~~~~-~  197 (337)
T d1gxra_         121 LSIWDLAAPT-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGT-K  197 (337)
T ss_dssp             EEEEECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-E
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc-c
Confidence            9999987543 23445566788899999999999999999999999999999999888888 8999999999999998 7


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      +++++.|+.+++||+++++.+..+.              +...|.+++|+|      +++++++++.|+.+++||+++..
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~--------------~~~~i~~l~~~~------~~~~l~~~~~d~~i~i~d~~~~~  257 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHD--------------FTSQIFSLGYCP------TGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE--------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTSSC
T ss_pred             cccccccccccccccccceeecccc--------------cccceEEEEEcc------cccccceeccccccccccccccc
Confidence            9999999999999999998888776              457899999999      79999999999999999998742


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                               ......|...|.+++|+   |++++|++++.||.|++||
T Consensus       258 -----------------------------------------~~~~~~~~~~i~~v~~s---~~g~~l~s~s~Dg~i~iwd  293 (337)
T d1gxra_         258 -----------------------------------------KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             -----------------------------------------EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEE
T ss_pred             -----------------------------------------cccccccccccceEEEC---CCCCEEEEEeCCCeEEEEE
Confidence                                                     12456788999999999   9999999999999999999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +.+++         .+ ....|...|.+++|+| ++++|++|+.||.|+|||+
T Consensus       294 ~~~~~---------~~-~~~~~~~~v~~~~~s~-d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         294 TPYGA---------SI-FQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTTCC---------EE-EEEECSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred             CCCCC---------EE-EEccCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence            99984         32 2345889999999999 9999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-49  Score=325.95  Aligned_cols=296  Identities=16%  Similarity=0.213  Sum_probs=263.9

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      .+..+|+||+++|++++|+|+ +++||||+.||+|+|||+++++.+..+.+|...|.+++|+|++.+++++..++.+.+|
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             CccEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            456789999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      +....+   ....+..|...+.++.++|+++.+++++.|+.+++||+++++.+..+. +|...+.+++|+|++. +|+++
T Consensus        87 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~  161 (317)
T d1vyhc1          87 DFQGFE---CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASC  161 (317)
T ss_dssp             ETTSSC---EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEE
T ss_pred             cccccc---cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-cCCCcceeeecccCCC-EEEEE
Confidence            988543   344455678899999999999999999999999999999999999999 9999999999999998 79999


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc--------------cccCCCCEEEEEecCCc
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD--------------MLDKTNKICVVAKGDGV  231 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~l~~~~~dg~  231 (375)
                      +.|+.|++|++++++....+..             +...+.+++++|..              .....+..+++++.|+.
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  228 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELRE-------------HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  228 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC-------------CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             eCCCeEEEEeeccceeeEEEec-------------CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence            9999999999999888877763             35677888887741              11234678999999999


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG  311 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~  311 (375)
                      |++||++++                                        +++..+.+|...|.+++++   |++++|++|
T Consensus       229 i~~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~---~~~~~l~s~  265 (317)
T d1vyhc1         229 IKMWDVSTG----------------------------------------MCLMTLVGHDNWVRGVLFH---SGGKFILSC  265 (317)
T ss_dssp             EEEEETTTT----------------------------------------EEEEEEECCSSCEEEEEEC---SSSSCEEEE
T ss_pred             EEEEECCCC----------------------------------------cEEEEEeCCCCCEEEEEEC---CCCCEEEEE
Confidence            999999975                                        4556778899999999999   999999999


Q ss_pred             cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +.||.|++||+.++         +++..+.+|.+.|++++|+| ++++|++|+.||+|+|||
T Consensus       266 ~~dg~i~iwd~~~~---------~~~~~~~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred             ECCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence            99999999999998         66778889999999999999 999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-47  Score=314.46  Aligned_cols=292  Identities=13%  Similarity=0.117  Sum_probs=243.9

Q ss_pred             cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194           13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS   92 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~   92 (375)
                      .+.+.+.+++++|+ ++.||.+. ++.|.+|++++++....+.+|...|++++|+|+|++|++|+.||+|++||+.++..
T Consensus        15 ~~r~~~~~~a~~~~-g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          15 TARGTAVVLGNTPA-GDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CCTTCCCCCEECTT-SSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CCCCCeEEEEEcCC-CCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence            34556778899999 78888875 56799999999999999999999999999999999999999999999999987643


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK  170 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  170 (375)
                      . ....+..|..+|.+++|+|++++|++++.  +..+++|++++++....+. +|...|++++|+|+++++|++|+.|+.
T Consensus        93 ~-~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          93 I-LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             C-EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             c-cccccccccCcccccccccccccccccccccccccccccccccccccccc-ccccccccccccccceeeecccccccc
Confidence            2 22345678899999999999999999875  4569999999999999998 999999999999999877899999999


Q ss_pred             EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194          171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT  250 (375)
Q Consensus       171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  250 (375)
                      |++||+++++....+..             |...|+++.++|      +++++++++.|+.|++||+.++......... 
T Consensus       171 i~i~d~~~~~~~~~~~~-------------~~~~i~~v~~~p------~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~-  230 (311)
T d1nr0a1         171 VAIFEGPPFKFKSTFGE-------------HTKFVHSVRYNP------DGSLFASTGGDGTIVLYNGVDGTKTGVFEDD-  230 (311)
T ss_dssp             EEEEETTTBEEEEEECC-------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEEEECBCT-
T ss_pred             ccccccccccccccccc-------------ccccccccccCc------ccccccccccccccccccccccccccccccc-
Confidence            99999999887777653             467899999999      8999999999999999999976443322111 


Q ss_pred             CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee
Q 017194          251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT  330 (375)
Q Consensus       251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  330 (375)
                                                      .....+|...|.+++|+   |++++|++|+.||.|+|||+++++    
T Consensus       231 --------------------------------~~~~~~h~~~V~~~~~s---~~~~~l~tgs~Dg~v~iwd~~t~~----  271 (311)
T d1nr0a1         231 --------------------------------SLKNVAHSGSVFGLTWS---PDGTKIASASADKTIKIWNVATLK----  271 (311)
T ss_dssp             --------------------------------TSSSCSSSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTTE----
T ss_pred             --------------------------------ccccccccccccccccC---CCCCEEEEEeCCCeEEEEECCCCc----
Confidence                                            11445789999999999   999999999999999999999984    


Q ss_pred             cchhhhhhhhcccc---cceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          331 SINNDLLIKNINLN---KKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       331 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                           ++..+..|.   ..+.++.|   ++++|++++.||.|++||.+
T Consensus       272 -----~~~~l~~~~~~~~~~~~~~~---~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         272 -----VEKTIPVGTRIEDQQLGIIW---TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             -----EEEEEECCSSGGGCEEEEEE---CSSCEEEEETTCCEEEEETT
T ss_pred             -----EEEEEECCCCccceEEEEEe---cCCEEEEEECCCEEEEEeCC
Confidence                 444444333   33445555   45689999999999999975

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-47  Score=323.81  Aligned_cols=304  Identities=16%  Similarity=0.198  Sum_probs=244.1

Q ss_pred             ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee------------------ecCccEEEEEEeCCCCeE
Q 017194           12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD------------------VGNGPVTSLCFKSGNEDI   73 (375)
Q Consensus        12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~------------------~~~~~v~~l~~~~~~~~l   73 (375)
                      .+|++.|+||+|+|+ |++||+|+ |++|+|||+.+++.+..+.                  .|...|.+++|+|++++|
T Consensus        59 ~~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          59 LDHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCCcEEEEEECCC-CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            369999999999998 89999987 8999999999988766653                  356679999999999999


Q ss_pred             EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194           74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ  153 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  153 (375)
                      ++|+.|+.|++||...++   .+....+|...|.++.+++++..+++++.++.+++||.++........ .+. ....+.
T Consensus       137 ~s~~~dg~v~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~-~~~~~~  211 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IED-GVTTVA  211 (388)
T ss_dssp             EEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS-CEEEEE
T ss_pred             eecccccccccccccccc---cccccccccccccccccccccccccccccceeeeeeeccccccccccc-ccc-cccccc
Confidence            999999999999998653   445566789999999999999999999999999999999888877776 444 455566


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      +.+....+|++++.|+.|++||.+++.....+....      .....|...|.+++|+|      ++++|++++.||.|+
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~------~~~~~h~~~v~~l~~s~------~~~~l~s~~~d~~i~  279 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN------ESGTGHKDSVYSVVFTR------DGQSVVSGSLDRSVK  279 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECT------TSSEEEEEETTSEEE
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeecccc------ccccCCCCCEEEEEECC------CCCEEEEEECCCcEE
Confidence            666443389999999999999999988877765321      11122567899999999      799999999999999


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +||+++..........                            ...........|...|.+++|+   |++++|++|+.
T Consensus       280 iwd~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~sg~~  328 (388)
T d1erja_         280 LWNLQNANNKSDSKTP----------------------------NSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSK  328 (388)
T ss_dssp             EEEC-------------------------------------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEET
T ss_pred             EEeccCCccccccccc----------------------------cccceeeecccccceEEEEEEC---CCCCEEEEEeC
Confidence            9999875433222111                            1123344666889999999999   99999999999


Q ss_pred             CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeee------cCCCCCcEEEeeCCCeEEEEecC
Q 017194          314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT------TPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ||.|++||+.++         +++..+.+|.+.|.++++      +| ++++|++|+.||+|+||+++
T Consensus       329 dg~i~vwd~~~~---------~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCC---------cEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            999999999998         666778899999998875      45 88999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.9e-47  Score=309.97  Aligned_cols=296  Identities=19%  Similarity=0.181  Sum_probs=235.6

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      |...+.++||+++|++++|+|+ +++|+||+.||+|++||+++++.++.+. .|...|.+++|+|+++ +++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEE
Confidence            4567889999999999999998 8999999999999999999999888774 6899999999999986 55667799999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +|+...............+...+.+++|+|+++.+++++ ++.+.+|+...  .... .  ....+.+++|+|+++ +++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~-~--~~~~~~~~~~s~~~~-~l~  152 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEV-P--ISYNSSCVALSNDKQ-FVA  152 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEE-E--CSSCEEEEEECTTSC-EEE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--cccc-c--ccccccccccccccc-ccc
Confidence            999875433223333344577889999999998877765 46899998542  2222 2  344678899999998 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||+++++........            |...|.+++|+|      ++++|++++.|+.|++||+.+....
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~~~------------~~~~i~~~~~~~------~~~~l~~~~~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKTIV------------HPAEITSVAFSN------NGAFLVATDQSRKVIPYSVANNFEL  214 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEEE------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccccccc------------cccccccccccc------ccccccccccccccccccccccccc
Confidence            9999999999999877655444333            568899999999      7999999999999999999864322


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                           .....+.+|..+|++++|+   |++++|++|+.||.|++||++
T Consensus       215 -------------------------------------~~~~~~~~h~~~v~~l~~s---~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         215 -------------------------------------AHTNSWTFHTAKVACVSWS---PDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             -------------------------------------SCCCCCCCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETT
T ss_pred             -------------------------------------ccccccccccccccccccc---ccccceEEEcCCCEEEEEECC
Confidence                                                 2334667899999999999   999999999999999999998


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      +....      ........+...+..+.+ + ++++|++++.|+.|++||++
T Consensus       255 ~~~~~------~~~~~~~~~~~~v~~~~~-~-~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         255 KPSDH------PIIIKGAHAMSSVNSVIW-L-NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CTTSC------CEEETTSSTTSCEEEEEE-E-ETTEEEEEETTSCEEEEECC
T ss_pred             CCCcc------eEEEecCCCCCcEEEEEE-C-CCCEEEEEeCCCEEEEEecc
Confidence            86421      122222334456666655 5 56799999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-45  Score=308.84  Aligned_cols=295  Identities=15%  Similarity=0.220  Sum_probs=253.1

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .+..++|+||+++|++++|+|+ +++||||+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            3556789999999999999998 899999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCcc-cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           85 FDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        85 wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      |+....... .....+.+|.......... .+..+.....+.....++........... .+...+....+.+.+. +++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~  200 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTR-LFV  200 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSS-EEE
T ss_pred             ccccccccccccceecccccccccccccc-ccccccccccccccccccccccccccccc-ccceeEeeeccccccc-eeE
Confidence            998754332 2333445555555544444 45577788889999999988877777777 7888899999999888 799


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.|++||+++++++..+..             |...|++++|+|      ++++|++|+.||.|++||++.....
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~-------------h~~~i~~v~~~p------~~~~l~s~s~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTG-------------HESDINAICFFP------NGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECC-------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeecCceEEEEECCCCcEEEEEeC-------------CCCCeEEEEECC------CCCEEEEEeCCCeEEEEeecccccc
Confidence            999999999999999998888763             468899999999      7999999999999999999864221


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                            .......+...|.+++|+   |++++|++|+.||.|++||+.
T Consensus       262 --------------------------------------~~~~~~~~~~~i~~~~~s---~~~~~l~~g~~dg~i~iwd~~  300 (340)
T d1tbga_         262 --------------------------------------MTYSHDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             --------------------------------------EEECCTTCCSCEEEEEEC---SSSCEEEEEETTSCEEEEETT
T ss_pred             --------------------------------------cccccccccCceEEEEEC---CCCCEEEEEECCCEEEEEECC
Confidence                                                  122345667789999999   999999999999999999999


Q ss_pred             CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      ++         +.+..+.+|.++|++++|+| ++++|++|+.||.|+|||
T Consensus       301 ~~---------~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         301 KA---------DRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TC---------CEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CC---------cEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence            98         66677889999999999999 999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-44  Score=305.39  Aligned_cols=308  Identities=10%  Similarity=0.068  Sum_probs=234.0

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      +.++|+|++|+|+ +++||+|+.||.|+|||.++++  .+..+++|..+|.+++|+|++++|++++.|++|++||+.++.
T Consensus         6 ~~~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            3588999999999 8999999999999999998775  567788999999999999999999999999999999998654


Q ss_pred             cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee----eeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194           92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL----YKSLRAGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                       ......+..|...|.+++|+|+++.|++++.|+.+++|+++....    ..... .|...|.+++|+|++. +|++|+.
T Consensus        85 -~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~-~l~s~s~  161 (371)
T d1k8kc_          85 -WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRSTVLSLDWHPNSV-LLAAGSC  161 (371)
T ss_dssp             -EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT-TCCSCEEEEEECTTSS-EEEEEET
T ss_pred             -cccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccc-cccccccccccccccc-ceecccc
Confidence             334444566788999999999999999999999999999876533    22233 7889999999999998 7999999


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCC-----CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGN-----AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      |+.|++||+...................     .....+...+.+++|+|      ++++|++++.|+.|++||+.++  
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~s~~~d~~i~iwd~~~~--  233 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA------NGSRVAWVSHDSTVCLADADKK--  233 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS------SSSEEEEEETTTEEEEEEGGGT--
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec------ccccccccccCCcceEEeeecc--
Confidence            9999999987654322211110000000     11122567899999999      7999999999999999999864  


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                            +.+..+..|..+|.+++|+   |++++|++|. |+.+++|..
T Consensus       234 --------------------------------------~~~~~~~~~~~~v~s~~fs---~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         234 --------------------------------------MAVATLASETLPLLAVTFI---TESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             --------------------------------------TEEEEEECSSCCEEEEEEE---ETTEEEEEET-TSSCEEEEE
T ss_pred             --------------------------------------cceeeeecccccceeeeec---CCCCEEEEEc-CCceEEEEe
Confidence                                                  2344677889999999999   8998888766 666666554


Q ss_pred             CC--ceeeeec-------------c-----------------hhhhhhhhcccccceeeeeecCCCC---CcEEEeeCCC
Q 017194          323 SR--FQGVQTS-------------I-----------------NNDLLIKNINLNKKVNWLCTTPTES---ENLVVCDTSK  367 (375)
Q Consensus       323 ~~--~~~~~~~-------------~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg  367 (375)
                      ..  .......             .                 ..........|.+.|+++++.+...   ..|+|++.||
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg  351 (371)
T d1k8kc_         272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  351 (371)
T ss_dssp             ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             eCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCC
Confidence            33  2211000             0                 0000011124888999999987322   3488999999


Q ss_pred             eEEEEecC
Q 017194          368 VVKVYSIS  375 (375)
Q Consensus       368 ~v~iw~~~  375 (375)
                      .|++||++
T Consensus       352 ~v~iW~~~  359 (371)
T d1k8kc_         352 GMSIWDVR  359 (371)
T ss_dssp             EEEEEEHH
T ss_pred             eEEEEeCC
Confidence            99999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.1e-42  Score=282.70  Aligned_cols=257  Identities=15%  Similarity=0.183  Sum_probs=215.4

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEeeecCccEEEEEEeCCCCeEEEEcCC--
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSSG--   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~d--   79 (375)
                      ++...+.+.+|.+.|++++|+|+ +++||+|+.||+|+|||+.+++..  ..+..|..+|.+++|+|++++|++++.+  
T Consensus        47 ~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~  125 (311)
T d1nr0a1          47 SLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  125 (311)
T ss_dssp             CSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CCceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc
Confidence            55677889999999999999999 899999999999999999887653  5577899999999999999999998864  


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCC
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK  158 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (375)
                      ..+++|++++++.   ...+.+|...|.+++|+|++++ |++|+.|+.|++||+++++....+. .|..+|+++.|+|++
T Consensus       126 ~~~~v~~~~~~~~---~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~  201 (311)
T d1nr0a1         126 RFGHVFLFDTGTS---NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDG  201 (311)
T ss_dssp             CSEEEEETTTCCB---CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTS
T ss_pred             ccccccccccccc---cccccccccccccccccccceeeecccccccccccccccccccccccc-cccccccccccCccc
Confidence            5699999987643   4456678899999999999885 7889999999999999999999998 999999999999999


Q ss_pred             CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          159 PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       159 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      + ++++++.|+.|++||+++++....+....      .....|...|.+++|+|      ++++|++|+.||.|++||++
T Consensus       202 ~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~------~~~~~h~~~V~~~~~s~------~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         202 S-LFASTGGDGTIVLYNGVDGTKTGVFEDDS------LKNVAHSGSVFGLTWSP------DGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             S-EEEEEETTSCEEEEETTTCCEEEECBCTT------SSSCSSSSCEEEEEECT------TSSEEEEEETTSEEEEEETT
T ss_pred             c-ccccccccccccccccccccccccccccc------cccccccccccccccCC------CCCEEEEEeCCCeEEEEECC
Confidence            8 79999999999999999988777665321      12223667899999999      79999999999999999999


Q ss_pred             CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC---ccEEEEEEeecCCCCcEEEEecCCC
Q 017194          239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT---AAASCVAFSMFGERGKYLISGGNDK  315 (375)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~~l~s~~~dg  315 (375)
                      +++                                        ++.++..|.   ..+.++.|     ++.+|++++.||
T Consensus       269 t~~----------------------------------------~~~~l~~~~~~~~~~~~~~~-----~~~~l~s~s~dG  303 (311)
T d1nr0a1         269 TLK----------------------------------------VEKTIPVGTRIEDQQLGIIW-----TKQALVSISANG  303 (311)
T ss_dssp             TTE----------------------------------------EEEEEECCSSGGGCEEEEEE-----CSSCEEEEETTC
T ss_pred             CCc----------------------------------------EEEEEECCCCccceEEEEEe-----cCCEEEEEECCC
Confidence            752                                        333444332   33444444     456899999999


Q ss_pred             eEEEEeCC
Q 017194          316 LVKVWDCS  323 (375)
Q Consensus       316 ~i~iwd~~  323 (375)
                      .|++||.+
T Consensus       304 ~i~~wd~d  311 (311)
T d1nr0a1         304 FINFVNPE  311 (311)
T ss_dssp             CEEEEETT
T ss_pred             EEEEEeCC
Confidence            99999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=275.57  Aligned_cols=296  Identities=16%  Similarity=0.198  Sum_probs=227.0

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +.+..+.|+||++.|.+ +++++ +++||||+.||+|+|||+.+++++.++.+|...|.+++|+|+  +|++++.|+.++
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~   80 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK   80 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred             CCCcCEEECCcCCceEE-EEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence            45677889999999865 36666 789999999999999999999999999999999999999874  899999999999


Q ss_pred             EEECCCCCccccccccc--------------------------CC---------CcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194           84 SFDVHMPASWRPLESYN--------------------------YN---------KEEINQIVCNPKSSFLACADDGGDVK  128 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~--------------------------~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~  128 (375)
                      +|+..............                          ..         ..........+....++.++.|+.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            99987533211111000                          00         00011122333455788899999999


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI  208 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (375)
                      +||.+..+.+..+. +|...+..+.  +++. .+++++.||.|++||++.++.+..+..             |...+.++
T Consensus       161 ~~d~~~~~~~~~~~-~~~~~~~~~~--~~~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~-------------~~~~v~~~  223 (342)
T d2ovrb2         161 VWDPETETCLHTLQ-GHTNRVYSLQ--FDGI-HVVSGSLDTSIRVWDVETGNCIHTLTG-------------HQSLTSGM  223 (342)
T ss_dssp             EEEGGGTEEEEEEC-CCSSCEEEEE--ECSS-EEEEEETTSCEEEEETTTCCEEEEECC-------------CCSCEEEE
T ss_pred             EeecccceeeEEEc-Cccccccccc--CCCC-EEEEEeCCCeEEEeecccceeeeEecc-------------cccceeEE
Confidence            99999999888888 8876666554  4566 799999999999999999988877763             35677777


Q ss_pred             eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194          209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG  288 (375)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~  288 (375)
                      +++        +++|++++.||.|++||+...+..                                     ..+.....
T Consensus       224 ~~~--------~~~l~s~s~d~~i~iwd~~~~~~~-------------------------------------~~~~~~~~  258 (342)
T d2ovrb2         224 ELK--------DNILVSGNADSTVKIWDIKTGQCL-------------------------------------QTLQGPNK  258 (342)
T ss_dssp             EEE--------TTEEEEEETTSCEEEEETTTCCEE-------------------------------------EEECSTTS
T ss_pred             ecC--------CCEEEEEcCCCEEEEEeccccccc-------------------------------------ccccccce
Confidence            774        569999999999999999874322                                     23334455


Q ss_pred             CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194          289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV  368 (375)
Q Consensus       289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  368 (375)
                      |...+.++.++     ++++++|+.||.|++||+++++......    .....+|.+.|++++|+| ++.+|++|+.||+
T Consensus       259 ~~~~~~~~~~~-----~~~~~s~s~Dg~i~iwd~~tg~~i~~~~----~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt  328 (342)
T d2ovrb2         259 HQSAVTCLQFN-----KNFVITSSDDGTVKLWDLKTGEFIRNLV----TLESGGSGGVVWRIRASN-TKLVCAVGSRNGT  328 (342)
T ss_dssp             CSSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCCEEEEEE----ECTTGGGTCEEEEEEECS-SEEEEEEECSSSS
T ss_pred             eeeceeecccC-----CCeeEEEcCCCEEEEEECCCCCEEEEEe----cccCCCCCCCEEEEEECC-CCCEEEEEeCCCC
Confidence            67777777765     4699999999999999999985432110    012246888999999999 8999999999885


Q ss_pred             ----EEEEecC
Q 017194          369 ----VKVYSIS  375 (375)
Q Consensus       369 ----v~iw~~~  375 (375)
                          |++||+.
T Consensus       329 ~~~~l~~~Df~  339 (342)
T d2ovrb2         329 EETKLLVLDFD  339 (342)
T ss_dssp             SCCEEEEEECC
T ss_pred             CeeEEEEEeCC
Confidence                9999984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.6e-41  Score=276.96  Aligned_cols=292  Identities=11%  Similarity=0.099  Sum_probs=223.9

Q ss_pred             ceeEEEEecCCCCEEEEeCCCC-cEEEEecccC--ceeeEeeec-CccEEEEEEeC--CCCeEEEEcCCCeEEEEECCCC
Q 017194           17 TATCCIASRDRPGFVASSGEDG-CICWFDLRSK--DVQLVTDVG-NGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMP   90 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~--~~~~~~~~~-~~~v~~l~~~~--~~~~l~~~~~d~~i~iwd~~~~   90 (375)
                      .+++++|+|+ ++.|+.++.+. .|+.|+....  .....+.+| ...|++++|+|  ++++|++|+.||+|++||+..+
T Consensus        19 ~~t~l~~~~~-~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPT-TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETT-TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCC-CCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            4678999999 78888775543 4566665443  335566676 56899999998  5679999999999999998765


Q ss_pred             Ccccccc-----cccCCCcceeEEEEcCCCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194           91 ASWRPLE-----SYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI  163 (375)
Q Consensus        91 ~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  163 (375)
                      +....+.     .+..|.++|.+++|+++++++++++.  ++.+.+|+.++++.+..+. +|...|.+++|+|+++.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQSRPMRSM  176 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEEECSSSSCEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-ecccccccccccccccceEE
Confidence            4333222     23457889999999999999887764  6789999999999999999 99999999999999986788


Q ss_pred             EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      +++.|+.+++||+...+....+...          ..+...|.+++|+|.     .+.++++++.||.|++||++++   
T Consensus       177 ~~~~d~~v~~~d~~~~~~~~~~~~~----------~~~~~~v~~v~~~pd-----~~~~l~s~~~d~~i~iwd~~~~---  238 (325)
T d1pgua1         177 TVGDDGSVVFYQGPPFKFSASDRTH----------HKQGSFVRDVEFSPD-----SGEFVITVGSDRKISCFDGKSG---  238 (325)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECSS----------SCTTCCEEEEEECST-----TCCEEEEEETTCCEEEEETTTC---
T ss_pred             Eeecccccccccccccccceecccc----------cCCCCccEEeeeccc-----cceeccccccccceeeeeeccc---
Confidence            9999999999999877666555422          114567999999994     4789999999999999999875   


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS  323 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~  323 (375)
                                                           +.+..+.+|..++..+.|++..++|++|++++.|+.|+|||++
T Consensus       239 -------------------------------------~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         239 -------------------------------------EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             -------------------------------------CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             -------------------------------------cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence                                                 3344666676666555554333689999999999999999999


Q ss_pred             Cceeeeecchhhhhhhhcccc--cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          324 RFQGVQTSINNDLLIKNINLN--KKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +++         ++..+..|.  ..+..+++.+..+.+|++++.||.|++|||
T Consensus       282 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         282 TSK---------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTE---------EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCC---------EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            984         333333333  334444554433458999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-40  Score=278.10  Aligned_cols=283  Identities=16%  Similarity=0.231  Sum_probs=211.8

Q ss_pred             CeeeecCCCce-eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194            8 PRRLRGHKATA-TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus         8 ~~~l~~h~~~i-~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ..+|+||.+.| +|++|  + +++||||+.||+|+|||+.+++++.++.+|..+|.+++|+|+ .+|++++.|+.|++|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--E-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--E-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             cEEECCcCCCcEEEEEE--C-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            45799999886 55555  5 679999999999999999999999999999999999999986 5899999999999999


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEe-----------------------------------
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID-----------------------------------  131 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-----------------------------------  131 (375)
                      ....+....... ..+........+.+++.++++++.|+.|++||                                   
T Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          81 IKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             TTTTEEEEEECC-CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccc-ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            986543222111 11122233344444444555555555555554                                   


Q ss_pred             ----------------------------CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194          132 ----------------------------IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK  183 (375)
Q Consensus       132 ----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  183 (375)
                                                  +++++.+..+. ++...+.++.++|+++ .+++++.|+.|++||++++..+.
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeee-ccccccccccccccce-eeecccccceEEeeecccccccc
Confidence                                        44444444555 5677888999999998 79999999999999999998888


Q ss_pred             EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccc
Q 017194          184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN  263 (375)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g  263 (375)
                      .+..             |...|.+++++        +++|++++.||.|++||+.+...                     
T Consensus       238 ~~~~-------------h~~~v~~~~~~--------~~~l~~~~~dg~i~iwd~~~~~~---------------------  275 (355)
T d1nexb2         238 TLQG-------------HTALVGLLRLS--------DKFLVSAAADGSIRGWDANDYSR---------------------  275 (355)
T ss_dssp             EECC-------------CSSCCCEEEEC--------SSEEEEECTTSEEEEEETTTCCE---------------------
T ss_pred             cccc-------------ccccccccccc--------cceeeeeecccccccccccccce---------------------
Confidence            8763             46788999885        57899999999999999986421                     


Q ss_pred             cceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhh-hhhcc
Q 017194          264 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL-IKNIN  342 (375)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~  342 (375)
                                           .+..|...+.++.+.+  +++++|++|+ ||.|++||++++         +++ ..+.+
T Consensus       276 ---------------------~~~~~~~~~~~~~~~~--~~~~~l~~g~-d~~i~vwd~~tg---------~~~~~~~~~  322 (355)
T d1nexb2         276 ---------------------KFSYHHTNLSAITTFY--VSDNILVSGS-ENQFNIYNLRSG---------KLVHANILK  322 (355)
T ss_dssp             ---------------------EEEEECTTCCCCCEEE--ECSSEEEEEE-TTEEEEEETTTC---------CBCCSCTTT
T ss_pred             ---------------------ecccccCCceEEEEEc--CCCCEEEEEe-CCEEEEEECCCC---------CEEEEEecC
Confidence                                 2334445555554432  6777777665 899999999998         444 35678


Q ss_pred             cccceeeeeecCCCCCcEEEeeCCCeEEE--Eec
Q 017194          343 LNKKVNWLCTTPTESENLVVCDTSKVVKV--YSI  374 (375)
Q Consensus       343 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~i--w~~  374 (375)
                      |.++|.+++|+| + .++++++.||.++|  ||+
T Consensus       323 ~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         323 DADQIWSVNFKG-K-TLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             TCSEEEEEEEET-T-EEEEEEESSSCEEEEEEEC
T ss_pred             CCCCEEEEEEcC-C-eEEEEEECCCcEEEEEEeC
Confidence            999999999988 5 47888899998655  554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-39  Score=271.17  Aligned_cols=241  Identities=13%  Similarity=0.161  Sum_probs=211.9

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH   88 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~   88 (375)
                      ..+|++.|.+++|+|+ +++|++|+.||+|++||+...  +....+..|...+..++|+|++.++++++.++.|++|++.
T Consensus        93 ~~~h~~~I~~v~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~  171 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             CSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ecCCCCcEEEEEEcCC-CCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3579999999999999 899999999999999998754  4466778899999999999999999999999999999998


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      +++   .......|...|.+++|++++..+++++.|+.+++||+++++.+..+.  |...|.+++|+|+++ ++++++.|
T Consensus       172 ~~~---~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~-~l~~~~~d  245 (337)
T d1gxra_         172 NQT---LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGE-WLAVGMES  245 (337)
T ss_dssp             TTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ccc---ccccccccccccccccccccccccccccccccccccccccceeecccc--cccceEEEEEccccc-ccceeccc
Confidence            754   344455678899999999999999999999999999999999888886  889999999999998 79999999


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      +.+++||+++++......              |...|.+++|+|      ++++|++++.||.|++||+.+++.      
T Consensus       246 ~~i~i~d~~~~~~~~~~~--------------~~~~i~~v~~s~------~g~~l~s~s~Dg~i~iwd~~~~~~------  299 (337)
T d1gxra_         246 SNVEVLHVNKPDKYQLHL--------------HESCVLSLKFAY------CGKWFVSTGKDNLLNAWRTPYGAS------  299 (337)
T ss_dssp             SCEEEEETTSSCEEEECC--------------CSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTCCE------
T ss_pred             cccccccccccccccccc--------------cccccceEEECC------CCCEEEEEeCCCeEEEEECCCCCE------
Confidence            999999999877654332              568899999999      799999999999999999987521      


Q ss_pred             cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                        +.. ..|...|.+++|+   |++++|++|+.||+|+|||+
T Consensus       300 ----------------------------------~~~-~~~~~~v~~~~~s---~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         300 ----------------------------------IFQ-SKESSSVLSCDIS---VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ----------------------------------EEE-EECSSCEEEEEEC---TTSCEEEEEETTSCEEEEEE
T ss_pred             ----------------------------------EEE-ccCCCCEEEEEEe---CCCCEEEEEeCCCeEEEEEE
Confidence                                              122 2467899999999   99999999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=259.43  Aligned_cols=286  Identities=16%  Similarity=0.198  Sum_probs=224.2

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .++++...+|...|+|++|  + +++||||+.||+|+|||+++++++.++.+|..+|.+++|  ++++|++++.|+.|++
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--c-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            3455566788899998765  5 789999999999999999999999999999999999887  5689999999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee---eeeEecCcccceeEEEEeeCCCcE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      |++..+........     .......+.+....++++..++.+.+||......   ...+. .|...+..+.+.+.   .
T Consensus        80 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~  150 (293)
T d1p22a2          80 WDVNTGEMLNTLIH-----HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFDDK---Y  150 (293)
T ss_dssp             EESSSCCEEEEECC-----CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEEETT---E
T ss_pred             cccccccccccccc-----cccccccccccccceeecccccceeEeecccccccccccccc-ccccccccceeccc---c
Confidence            99987654333222     2223344556667899999999999999986543   33445 78888888777654   6


Q ss_pred             EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      +++++.|+.|++||+++++.+..+...             ...+..+.+        ++..+++++.||.|++||+++. 
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~--------~~~~l~~~~~dg~i~i~d~~~~-  208 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEFVRTLNGH-------------KRGIACLQY--------RDRLVVSGSSDNTIRLWDIECG-  208 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEE--------ETTEEEEEETTSCEEEEETTTC-
T ss_pred             cccccCCCceeeecCCCCcEEEEEccc-------------ccccccccC--------CCCeEEEecCCCEEEEEecccc-
Confidence            889999999999999999988887733             456666666        4678999999999999999874 


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                                                             ..+....+|...+..+  +   +++.+|++|+.||.|++||
T Consensus       209 ---------------------------------------~~~~~~~~~~~~v~~~--~---~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         209 ---------------------------------------ACLRVLEGHEELVRCI--R---FDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             ---------------------------------------CEEEEECCCSSCEEEE--E---CCSSEEEEEETTSCEEEEE
T ss_pred             ---------------------------------------eeeeeecccceeeeec--c---ccceEEEEEcCCCEEEEEE
Confidence                                                   2334556677777654  4   6788999999999999999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +..............+..+.+|.+.|++++|+   +++|+|++.||+|++||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d---~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             HHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC---SSCEEECCSSSEEEEEC
T ss_pred             CCCCccccccCCceeeEEecCCCCCEEEEEEc---CCEEEEEecCCEEEEeC
Confidence            87653322222223455677899999999984   56899999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-38  Score=270.87  Aligned_cols=286  Identities=19%  Similarity=0.237  Sum_probs=222.8

Q ss_pred             EEEeCCCCcEEEEecccCcee----eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc---------
Q 017194           31 VASSGEDGCICWFDLRSKDVQ----LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE---------   97 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------   97 (375)
                      .+.+..++.+.+|+....+..    .....|.+.|++|+|+|+|++|++|+ |+.|++||+.+++....+.         
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            456677788999997655432    22336999999999999999999986 8999999998765443322         


Q ss_pred             ------cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194           98 ------SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus        98 ------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                            ....|...|.+++|+|++++|++|+.||.|++||...++.+..+. +|...|.++++++++. .+++++.++.+
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~~~~~~~~~~i  187 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGD-KLVSGSGDRTV  187 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccc-cccccccccccccccc-cccccccceee
Confidence                  123467789999999999999999999999999999999999998 9999999999999988 79999999999


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      ++||.++.........              ......+.+.+.     ++.+|++++.||.|++||..++.......    
T Consensus       188 ~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----  244 (388)
T d1erja_         188 RIWDLRTGQCSLTLSI--------------EDGVTTVAVSPG-----DGKYIAAGSLDRAVRVWDSETGFLVERLD----  244 (388)
T ss_dssp             EEEETTTTEEEEEEEC--------------SSCEEEEEECST-----TCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred             eeeecccccccccccc--------------ccccccccccCC-----CCCeEEEEcCCCeEEEeecccCccceeec----
Confidence            9999998877766653              345566666654     78999999999999999999764432221    


Q ss_pred             CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec
Q 017194          252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS  331 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  331 (375)
                                                   .......+|...|.+++|+   |++++|++++.||.|++||+.........
T Consensus       245 -----------------------------~~~~~~~~h~~~v~~l~~s---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  292 (388)
T d1erja_         245 -----------------------------SENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDS  292 (388)
T ss_dssp             -----------------------------------CCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEEC---------
T ss_pred             -----------------------------cccccccCCCCCEEEEEEC---CCCCEEEEEECCCcEEEEeccCCcccccc
Confidence                                         1122456789999999999   99999999999999999999876533111


Q ss_pred             ---chhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          332 ---INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       332 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                         ...........|...|.+++|+| ++++|++|+.||.|++||++
T Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         293 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred             ccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence               11122334556889999999999 89999999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-39  Score=264.72  Aligned_cols=276  Identities=14%  Similarity=0.087  Sum_probs=220.3

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS   84 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i   84 (375)
                      .+++++|+||.++|++++|+|     |+||+.||+|++||+.++.     ..|...|.++++++++ .+++++.|+++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~   71 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKV   71 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence            467889999999999999975     8999999999999987643     5789999999998765 5789999999999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS  164 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  164 (375)
                      |++...+       +   ...+..+.+.+++..++++ .++.+.+|+..+++.+..+.  +...+  .++++++. .+++
T Consensus        72 w~~~~~~-------~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~-~~~v  135 (287)
T d1pgua2          72 NGITKHE-------F---GSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR--LNSPG--SAVSLSQN-YVAV  135 (287)
T ss_dssp             TTEEEEE-------C---SSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE--CSSCE--EEEEECSS-EEEE
T ss_pred             ccccccc-------c---ccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecc--cccee--eeeeccCc-ceee
Confidence            9976321       1   3457788888888666665 56678999999988888877  33333  45677777 5666


Q ss_pred             eecC-CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194          165 GGLD-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI  243 (375)
Q Consensus       165 ~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  243 (375)
                      ++.+ +.+++|++...+....+...            +...+.+++|+|      ++.+|++|+.||.|++||+.++.. 
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~v~~~~~s~------~~~~l~~g~~dg~i~i~d~~~~~~-  196 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLKTP------------LRAKPSYISISP------SETYIAAGDVMGKILLYDLQSREV-  196 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSSC------------CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEE-
T ss_pred             eccccceeeeeeccccceeeeeeec------------cCCceeEEEecc------Cccccccccccccccceeeccccc-
Confidence            6665 57999998866555544433            457899999999      899999999999999999987431 


Q ss_pred             ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec-------CCCCcEEEEecCCCe
Q 017194          244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF-------GERGKYLISGGNDKL  316 (375)
Q Consensus       244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------~~~~~~l~s~~~dg~  316 (375)
                                                            ....+.+|..+|.+++|+|.       .+++.+|++|+.|+.
T Consensus       197 --------------------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~  238 (287)
T d1pgua2         197 --------------------------------------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN  238 (287)
T ss_dssp             --------------------------------------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred             --------------------------------------ccccccccccccceeeecccccccccccCCCCeeEeecCCCe
Confidence                                                  12245678899999999841       135679999999999


Q ss_pred             EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      |++||++...        +.+..+.+|...|++++|+| ++ .|++++.|+.|++|++
T Consensus       239 i~iw~~~~~~--------~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         239 IFIYSVKRPM--------KIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEESSCTT--------CCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCC--------eEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence            9999998753        45566778999999999998 65 5999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.9e-39  Score=270.19  Aligned_cols=263  Identities=10%  Similarity=0.062  Sum_probs=209.8

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      .++|++++|+|++++||+++.|+.|++||+.+++ ...+..+.+|.++|.+++|+|++++|++++.|+.|++||+.++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            5789999999999999999999999999998653 355667788999999999999999999999999999999987654


Q ss_pred             e--eeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194          138 Y--KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM  215 (375)
Q Consensus       138 ~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (375)
                      .  ..+. +|...|.+++|+|+++ .|++++.|+.+++|++............         ...+...|.+++|+|   
T Consensus        86 ~~~~~~~-~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~---------~~~~~~~v~~v~~~p---  151 (371)
T d1k8kc_          86 KPTLVIL-RINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHI---------KKPIRSTVLSLDWHP---  151 (371)
T ss_dssp             EEEEECC-CCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEE---------CTTCCSCEEEEEECT---
T ss_pred             ccccccc-cccccccccccccccc-cceeecccCcceeeeeeccccccccccc---------ccccccccccccccc---
Confidence            3  3445 7888999999999998 7999999999999998876654433211         001457899999999   


Q ss_pred             ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEE
Q 017194          216 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC  295 (375)
Q Consensus       216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  295 (375)
                         ++++|++|+.|+.|++||..............           .+.           ............+|...|.+
T Consensus       152 ---~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~-----------~~~-----------~~~~~~~~~~~~~~~~~v~~  206 (371)
T d1k8kc_         152 ---NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP-----------WGS-----------KMPFGELMFESSSSCGWVHG  206 (371)
T ss_dssp             ---TSSEEEEEETTSCEEEEECCCTTTSCCCCCBT-----------TBS-----------CCCTTCEEEECCCCSSCEEE
T ss_pred             ---cccceeccccCcEEEEEeeccCcccccccccc-----------ccc-----------cccceeeeeeccCccCcEEE
Confidence               89999999999999999988643221111000           000           01112344567789999999


Q ss_pred             EEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       296 ~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ++|+   |++++|++++.|+.|++||+..+         ..+..+..|..+|.+++|+| ++++|++| .|+.+++|..
T Consensus       207 ~~~s---~~g~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~s~~fs~-d~~~la~g-~d~~~~~~~~  271 (371)
T d1k8kc_         207 VCFS---ANGSRVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTY  271 (371)
T ss_dssp             EEEC---SSSSEEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEE
T ss_pred             EEee---cccccccccccCCcceEEeeecc---------cceeeeecccccceeeeecC-CCCEEEEE-cCCceEEEEe
Confidence            9999   99999999999999999999987         55667788999999999999 88777655 5777777653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-37  Score=252.79  Aligned_cols=252  Identities=18%  Similarity=0.303  Sum_probs=228.1

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      .+++.++++++|.+.|.+++|+|+ +.+++++..++.+.+|+....+....+..|...+.++.|+|+++.+++++.|+.+
T Consensus        47 ~~~~~~~~~~~h~~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  125 (317)
T d1vyhc1          47 ETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI  125 (317)
T ss_dssp             TTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             CCCCEEEEEeCCCCcEEEEeeecc-cccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcce
Confidence            356788899999999999999999 8999999999999999999998888888999999999999999999999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC---
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP---  159 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  159 (375)
                      ++||+++++.   +..+..|...+.+++|+|++++|++++.|+.|++|++.+++.+..+. +|...+.++.|+|++.   
T Consensus       126 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~  201 (317)
T d1vyhc1         126 KMWEVQTGYC---VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSS  201 (317)
T ss_dssp             EEEETTTCCE---EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGG
T ss_pred             eEeeccccee---eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe-cCCCCceEEEEeeccccce
Confidence            9999987643   44556678899999999999999999999999999999999999998 8999999999987643   


Q ss_pred             ----------------cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194          160 ----------------WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       160 ----------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                                      .++++++.|+.|++||+++++++..+..             |...|.+++++|      ++++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~------~~~~l  262 (317)
T d1vyhc1         202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-------------HDNWVRGVLFHS------GGKFI  262 (317)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-------------CSSCEEEEEECS------SSSCE
T ss_pred             eeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-------------CCCCEEEEEECC------CCCEE
Confidence                            1588999999999999999998888873             467899999999      79999


Q ss_pred             EEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC
Q 017194          224 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE  303 (375)
Q Consensus       224 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  303 (375)
                      ++++.||.|++||+.++                                        +++..+.+|..+|++++|+   |
T Consensus       263 ~s~~~dg~i~iwd~~~~----------------------------------------~~~~~~~~h~~~V~~~~~s---~  299 (317)
T d1vyhc1         263 LSCADDKTLRVWDYKNK----------------------------------------RCMKTLNAHEHFVTSLDFH---K  299 (317)
T ss_dssp             EEEETTTEEEEECCTTS----------------------------------------CCCEEEECCSSCEEEEEEC---S
T ss_pred             EEEECCCeEEEEECCCC----------------------------------------cEEEEEcCCCCCEEEEEEc---C
Confidence            99999999999999874                                        3445778899999999999   9


Q ss_pred             CCcEEEEecCCCeEEEEe
Q 017194          304 RGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       304 ~~~~l~s~~~dg~i~iwd  321 (375)
                      ++++|++|+.||+|+|||
T Consensus       300 ~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEeC
Confidence            999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-37  Score=259.73  Aligned_cols=307  Identities=14%  Similarity=0.111  Sum_probs=215.3

Q ss_pred             eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce------eeEeeecCccEEEEEEe---C----CCCeEEE
Q 017194            9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFK---S----GNEDIIY   75 (375)
Q Consensus         9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------~~~~~~~~~~v~~l~~~---~----~~~~l~~   75 (375)
                      ...++|.+.|.++++++   ++++|++.|++|+|||..+.+.      ......|...+..+...   +    ++..+++
T Consensus         8 ~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            45689999999999864   5899999999999999876542      22223344444333321   1    2346778


Q ss_pred             EcCCCeEEEEECCCCCcccccc-------cccCCCcceeEEEEcCC-----CCeEEEEeCCCcEEEEeCcCce-------
Q 017194           76 VSSGKEVKSFDVHMPASWRPLE-------SYNYNKEEINQIVCNPK-----SSFLACADDGGDVKIIDIRQHC-------  136 (375)
Q Consensus        76 ~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~-------  136 (375)
                      ++.||.|++|++..........       ....+...+..++|.++     +.++++++.||.+++|++....       
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            9999999999976543322211       11223456777888765     4578999999999999985221       


Q ss_pred             --------e---eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194          137 --------L---YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV  205 (375)
Q Consensus       137 --------~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (375)
                              .   ..... .+...+.+++|+|++  +|++|+.|++|++||+.+++++..++..       .....|...|
T Consensus       165 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~-------~~l~~h~~~V  234 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPM-TPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQ-------HSMINNSNSI  234 (393)
T ss_dssp             TCCCCEEEEEEEECCSS-SSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECC-------C---CCCCCE
T ss_pred             eeeccceecccceeccc-CCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccc-------cccccccceE
Confidence                    0   11111 345678999999997  7999999999999999999888777633       1112267889


Q ss_pred             eEEeecCCccccCCCCEEEEEecCCc---EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194          206 HAIAIPDADMLDKTNKICVVAKGDGV---VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL  282 (375)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~  282 (375)
                      ++++|+|      ++++|++|+.|+.   |++||+.++.....+...                           ......
T Consensus       235 ~~l~~sp------dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~---------------------------~~~~~~  281 (393)
T d1sq9a_         235 RSVKFSP------QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP---------------------------THSSQA  281 (393)
T ss_dssp             EEEEECS------STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------------------------
T ss_pred             EEccccc------ccceeeeecCCCCcceeeecccccceeeeeeccc---------------------------cccccc
Confidence            9999999      8999999998874   999999987655433221                           112234


Q ss_pred             eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc-----------------
Q 017194          283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-----------------  345 (375)
Q Consensus       283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------------  345 (375)
                      ...+.+|...|++++|+   |++++|++|+.|++|+|||+++++..         ..+.+|.+                 
T Consensus       282 ~~~~~gH~~~V~~l~fs---pd~~~l~S~s~D~~v~vWd~~~g~~~---------~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         282 SLGEFAHSSWVMSLSFN---DSGETLCSAGWDGKLRFWDVKTKERI---------TTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             --CCBSBSSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTEEE---------EEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             eeeeecccCceeeeccC---CCCCeeEEECCCCEEEEEECCCCCEE---------EEECCcCCcccCCccEEEECCCCCE
Confidence            44677999999999999   99999999999999999999999544         33334433                 


Q ss_pred             ----ceeeeeecCC---------CCCcEEEeeCCCeEEEEe
Q 017194          346 ----KVNWLCTTPT---------ESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       346 ----~v~~~~~~~~---------~~~~l~s~~~dg~v~iw~  373 (375)
                          .+.++.|.+.         ..+.|++++.|+.|++|.
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         350 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence                3455555541         123488888999999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-36  Score=248.93  Aligned_cols=250  Identities=14%  Similarity=0.150  Sum_probs=200.0

Q ss_pred             CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcE
Q 017194           48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV  127 (375)
Q Consensus        48 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  127 (375)
                      |+..+.+++|..+|++++|+|++++|++|+.|+.|++||+++++....+.  ..|...|.+++|+|++++ ++++.|+.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~--~~h~~~v~~v~~~~~g~~-~~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMITGIKTTSKGDL-FTVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS--CSCSSCEEEEEECTTSCE-EEEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCCcEEEEEeecccee-ecccceeeE
Confidence            56678899999999999999999999999999999999999876544432  457889999999999865 555678999


Q ss_pred             EEEeCcCcee---eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCc
Q 017194          128 KIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF  204 (375)
Q Consensus       128 ~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (375)
                      ++|+......   ..... .+...+.+++|+|++. +++ ++.++.+++|+...   ......              ...
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~-~~~-~~~~~~i~~~~~~~---~~~~~~--------------~~~  138 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVAN-KLSSQPLGLAVSADGD-IAV-AACYKHIAIYSHGK---LTEVPI--------------SYN  138 (299)
T ss_dssp             EEECSSSSSSCTTSCCEE-ECSSCEEEEEECTTSS-CEE-EEESSEEEEEETTE---EEEEEC--------------SSC
T ss_pred             EEeccCCccccccccccc-cccccccccccccccc-ccc-cccccccccccccc---cccccc--------------ccc
Confidence            9999865432   22223 5677899999999997 444 45567899999542   222322              356


Q ss_pred             eeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee
Q 017194          205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY  284 (375)
Q Consensus       205 v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~  284 (375)
                      +.+++++|      +++++++|+.||.|++||+++...                                      . ..
T Consensus       139 ~~~~~~s~------~~~~l~~g~~dg~i~~~d~~~~~~--------------------------------------~-~~  173 (299)
T d1nr0a2         139 SSCVALSN------DKQFVAVGGQDSKVHVYKLSGASV--------------------------------------S-EV  173 (299)
T ss_dssp             EEEEEECT------TSCEEEEEETTSEEEEEEEETTEE--------------------------------------E-EE
T ss_pred             cccccccc------cccccccccccccccccccccccc--------------------------------------c-cc
Confidence            78999999      799999999999999999986421                                      1 11


Q ss_pred             eecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194          285 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       285 ~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      ....|...|.+++|+   |++++|++++.|+.|++||+.++...      .....+.+|...|.+++|+| ++++|++|+
T Consensus       174 ~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs  243 (299)
T d1nr0a2         174 KTIVHPAEITSVAFS---NNGAFLVATDQSRKVIPYSVANNFEL------AHTNSWTFHTAKVACVSWSP-DNVRLATGS  243 (299)
T ss_dssp             EEEECSSCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTTEE------SCCCCCCCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ccccccccccccccc---cccccccccccccccccccccccccc------cccccccccccccccccccc-cccceEEEc
Confidence            334678899999999   99999999999999999999876432      33345667999999999999 999999999


Q ss_pred             CCCeEEEEecC
Q 017194          365 TSKVVKVYSIS  375 (375)
Q Consensus       365 ~dg~v~iw~~~  375 (375)
                      .||.|++||++
T Consensus       244 ~dg~i~iwd~~  254 (299)
T d1nr0a2         244 LDNSVIVWNMN  254 (299)
T ss_dssp             TTSCEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            99999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-37  Score=256.57  Aligned_cols=311  Identities=12%  Similarity=0.064  Sum_probs=221.4

Q ss_pred             CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceee---EeeecCccEEEEEEeCCC-CeEEEEcCCC
Q 017194            5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL---VTDVGNGPVTSLCFKSGN-EDIIYVSSGK   80 (375)
Q Consensus         5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~v~~l~~~~~~-~~l~~~~~d~   80 (375)
                      |+.++.+++|++.|++|+|+|+ +++||+|+.||+|+|||++++....   ....|..+|.+++|+|++ .+|++|+.|+
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CCeEEcCCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            4567788999999999999999 8999999999999999998765432   333699999999999864 5789999999


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec---C--cccceeEEEEe
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---G--HSSICSSVQFI  155 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~--~~~~v~~~~~~  155 (375)
                      .|++|++...........  .+........+.++...+++++.++.+++||++.+........   .  .......+.+.
T Consensus        80 ~v~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTN--NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             CEEEECSSSSSSEEECBS--CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ceeeeecccccccccccc--cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            999999987544333322  2233444555667788999999999999999875543322210   1  12344566777


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  235 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  235 (375)
                      +.+. .+++++.|+.|++||++..+..........          ......+..+.+.     ++..+++++.||.+.+|
T Consensus       158 ~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         158 TNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESG----------LKYQIRDVALLPK-----EQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             ECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECS----------CSSCEEEEEECSG-----GGCEEEEEETTSEEEEE
T ss_pred             ccCC-ceeeecCCCcEEEEecccCcccceeeeecc----------cccceeeeEeecC-----CCCEEEeecCCCeEEEE
Confidence            8877 799999999999999987765544332200          2334555565553     68899999999999999


Q ss_pred             eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194          236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK  315 (375)
Q Consensus       236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg  315 (375)
                      +..............              .           ...........+|...+++++|+   |++++|++|+.||
T Consensus       222 ~~~~~~~~~~~~~~~--------------~-----------~~~~~~~~~~~~~~~~v~~l~~s---p~~~~lasg~~Dg  273 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRF--------------A-----------FRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGSDG  273 (342)
T ss_dssp             ECCTTCCSTTCTTCE--------------E-----------EECCCCCTTCCSSCCCEEEEEEC---TTTCCEEEEETTS
T ss_pred             EecCCcceeeccccc--------------e-----------eeeeeeccCCCcccccceeEEec---CCccEEEEECCCC
Confidence            987543221111000              0           00001122345677889999999   9999999999999


Q ss_pred             eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          316 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       316 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      .|++||+++++         .+..+..+ ..+..++|+| ++++|++++.|+.+++|.
T Consensus       274 ~v~vWD~~~~~---------~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         274 IISCWNLQTRK---------KIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CEEEEETTTTE---------EEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCS
T ss_pred             EEEEEECCCCc---------EEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEee
Confidence            99999999984         33333322 2344566777 888999998888766654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-35  Score=245.09  Aligned_cols=256  Identities=15%  Similarity=0.109  Sum_probs=195.1

Q ss_pred             CCCeeeecCC-CceeEEEEecC-CCCEEEEeCCCCcEEEEecccCceee--------EeeecCccEEEEEEeCCCCeEEE
Q 017194            6 AKPRRLRGHK-ATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQL--------VTDVGNGPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         6 ~~~~~l~~h~-~~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~--------~~~~~~~~v~~l~~~~~~~~l~~   75 (375)
                      ..+..+.+|. ..|++++|+|+ ++++||+|+.||+|+|||+..++...        .+..|..+|.+++|+++++++++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            3455677874 67999999984 46899999999999999997665432        23457889999999999999988


Q ss_pred             EcC--CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEec--Cccccee
Q 017194           76 VSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRA--GHSSICS  150 (375)
Q Consensus        76 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~  150 (375)
                      ++.  ++.+++|+.++++   .+..+.+|...|.+++|+|++++ +++++.|+.+++||....+....+..  .|...|.
T Consensus       133 ~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~  209 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR  209 (325)
T ss_dssp             EECCSSCSEEEEETTTCC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred             eeccccceEEEEeecccc---cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccE
Confidence            765  5689999998764   44555678999999999998875 67888999999999988776655541  5677899


Q ss_pred             EEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194          151 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG  230 (375)
Q Consensus       151 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg  230 (375)
                      +++|+|++..++++++.|+.|++||+++++.+..+..+...         ....+.++.+.       ++++|++++.|+
T Consensus       210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~---------v~~~~~s~~~~-------dg~~l~s~s~D~  273 (325)
T d1pgua1         210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP---------VQGGIFALSWL-------DSQKFATVGADA  273 (325)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC---------CCSCEEEEEES-------SSSEEEEEETTS
T ss_pred             Eeeeccccceeccccccccceeeeeeccccccccccccccc---------cccceeeeecc-------CCCEEEEEeCCC
Confidence            99999986558999999999999999999988877633100         11223444443       589999999999


Q ss_pred             cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee--cCCCccEEEEEEeecCCCCcEE
Q 017194          231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYL  308 (375)
Q Consensus       231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~~l  308 (375)
                      .|++||+++++                                        ++..+  ..|...+..+++.+  +.+.+|
T Consensus       274 ~i~iwd~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~l  311 (325)
T d1pgua1         274 TIRVWDVTTSK----------------------------------------CVQKWTLDKQQLGNQQVGVVA--TGNGRI  311 (325)
T ss_dssp             EEEEEETTTTE----------------------------------------EEEEEECCTTCGGGCEEEEEE--EETTEE
T ss_pred             eEEEEECCCCC----------------------------------------EEEEEEecCCcccCeEEEEEE--CCCCEE
Confidence            99999999753                                        22233  33333344444442  234588


Q ss_pred             EEecCCCeEEEEeC
Q 017194          309 ISGGNDKLVKVWDC  322 (375)
Q Consensus       309 ~s~~~dg~i~iwd~  322 (375)
                      ++++.||.|++||+
T Consensus       312 ~s~s~dg~i~vwdl  325 (325)
T d1pgua1         312 ISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSCEEEEET
T ss_pred             EEEECCCEEEEEEC
Confidence            99999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.7e-35  Score=248.75  Aligned_cols=313  Identities=9%  Similarity=-0.000  Sum_probs=233.9

Q ss_pred             eEEEEec-CCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC--eEEEEECCCCCcccc
Q 017194           19 TCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRP   95 (375)
Q Consensus        19 ~~~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~   95 (375)
                      ..-.||| | |+++|+++. |.|.+||++++..++.  .|...|.+++|+|||++|++++.+.  .|++||.++++.   
T Consensus         6 ~~~~fSP~d-G~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~---   78 (360)
T d1k32a3           6 FAEDFSPLD-GDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA---   78 (360)
T ss_dssp             GEEEEEECG-GGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE---
T ss_pred             hcccccCCC-CCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE---
Confidence            3467999 6 899998875 7999999988776553  5899999999999999998877553  799999987543   


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe----------
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG----------  165 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------  165 (375)
                       ..+..|...|.+++|+|++++|++++.++.+++|++.+++....+. .|...+.+++|+|+|+ .|+.+          
T Consensus        79 -~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~  155 (360)
T d1k32a3          79 -EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSR-FIAYGFPLKHGETDG  155 (360)
T ss_dssp             -EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSC-EEEEEEEECSSTTCS
T ss_pred             -EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeee-cccccccchhhcccee-eeeeeccccccceee
Confidence             3345578899999999999999999999999999999999988888 8899999999999998 56643          


Q ss_pred             ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      ..++.+++||+.+++......              +...+..++|+|      +|+.|++++.++.+.+||.........
T Consensus       156 ~~~~~~~v~d~~~~~~~~~~~--------------~~~~~~~~~~sp------dg~~l~~~s~~~~~~~~d~~~~~~~~~  215 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFAATT--------------ENSHDYAPAFDA------DSKNLYYLSYRSLDPSPDRVVLNFSFE  215 (360)
T ss_dssp             CCEEEEEEEETTTTEEEECSC--------------SSSBEEEEEECT------TSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred             ccccceeeeccccCceeeecc--------------cccccccccccC------CCCEEEEEeCCCceEcccccccceeec
Confidence            334579999998776544333              346788899999      899999999999999999876433221


Q ss_pred             c------cccCCCCCCceeecccccceeeeeeeecCCccee-------EeeeeecCCCccEEEEEEeecCCCCcEEEEec
Q 017194          246 S------KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL-------HLDYSVGGHTAAASCVAFSMFGERGKYLISGG  312 (375)
Q Consensus       246 ~------~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~  312 (375)
                      .      ..........+.+++++..+..............       .....+..+...+..+.+...++++.++++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (360)
T d1k32a3         216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP  295 (360)
T ss_dssp             SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred             cccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC
Confidence            1      1112234455678888877654221110000000       01112333444555555553335556788899


Q ss_pred             CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          313 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       313 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      .++.|++||+.+++         .    ..|.+.|..++|+| ||++|++++.||.|++|+++
T Consensus       296 ~~~~i~~~d~~~~~---------~----~~~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         296 EKGVLLKYDVKTRK---------V----TEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             CCEEEEEEETTTCC---------E----EEEEEEEEEEEECT-TSCEEEEEETTSCEEEEESS
T ss_pred             CCCEEEEEECCCCe---------E----EEecCCcCEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            99999999998863         2    34567799999999 99999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-34  Score=237.14  Aligned_cols=251  Identities=14%  Similarity=0.274  Sum_probs=213.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc----eeeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d   79 (375)
                      +++.+..+.+|..+|.+++|+|+ +.++++|+.|+.+++|+.....    ....+.+|........... +..+.....+
T Consensus        86 ~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  163 (340)
T d1tbga_          86 TTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGD  163 (340)
T ss_dssp             TTEEEEEEECSCSCEEEEEECTT-SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETT
T ss_pred             cceeEEEEecccccEEeeEeecc-ceeeeeecccceeecccccccccccccceeccccccccccccccc-cccccccccc
Confidence            55667889999999999999999 8999999999999999976544    3455666777666666555 4567778888


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      .....+.......   ......+...+....+.+.+.++++++.|+.|++||+++++.+..+. +|...|++++|+|+++
T Consensus       164 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~  239 (340)
T d1tbga_         164 TTCALWDIETGQQ---TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN  239 (340)
T ss_dssp             TEEEEEETTTTEE---EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS
T ss_pred             ccccccccccccc---cccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCC
Confidence            9999998875432   23333446788999999999999999999999999999999999999 9999999999999998


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                       +|++++.|+.|++||++..+....+....           +...+.+++|+|      ++++|++|+.||.|++||+.+
T Consensus       240 -~l~s~s~d~~i~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~~s~------~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         240 -AFATGSDDATCRLFDLRADQELMTYSHDN-----------IICGITSVSFSK------SGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCTT-----------CCSCEEEEEECS------SSCEEEEEETTSCEEEEETTT
T ss_pred             -EEEEEeCCCeEEEEeeccccccccccccc-----------ccCceEEEEECC------CCCEEEEEECCCEEEEEECCC
Confidence             79999999999999999888776664331           456799999999      799999999999999999987


Q ss_pred             cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194          240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV  319 (375)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i  319 (375)
                      +                                        +++..+.+|..+|++++|+   |++++|++|+.||.|+|
T Consensus       302 ~----------------------------------------~~~~~~~~H~~~V~~l~~s---~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         302 A----------------------------------------DRAGVLAGHDNRVSCLGVT---DDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             C----------------------------------------CEEEEECCCSSCEEEEEEC---TTSSCEEEEETTSCEEE
T ss_pred             C----------------------------------------cEEEEEcCCCCCEEEEEEe---CCCCEEEEEccCCEEEE
Confidence            4                                        3455788999999999999   99999999999999999


Q ss_pred             Ee
Q 017194          320 WD  321 (375)
Q Consensus       320 wd  321 (375)
                      ||
T Consensus       339 Wd  340 (340)
T d1tbga_         339 WN  340 (340)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-33  Score=230.52  Aligned_cols=272  Identities=11%  Similarity=0.030  Sum_probs=197.0

Q ss_pred             ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcE
Q 017194           49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDV  127 (375)
Q Consensus        49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i  127 (375)
                      +.++..++|.+.|++|+|+|++++|++++.|++|++||++++.....+....+|..+|.+++|+|++ .+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            4466678899999999999999999999999999999998765544555555689999999999864 579999999999


Q ss_pred             EEEeCcCceeeeeEecCcccce-eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          128 KIIDIRQHCLYKSLRAGHSSIC-SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      ++|++.......... .+.... ....+.++.. .+++++.++.+++||++.+............       ........
T Consensus        82 ~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~  152 (342)
T d1yfqa_          82 LKVDLIGSPSFQALT-NNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-------NNTKVKNK  152 (342)
T ss_dssp             EEECSSSSSSEEECB-SCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCS-------SSSSSCCC
T ss_pred             eeeeccccccccccc-ccccccccccccccccc-cccccccccccceeeccccccceeeeccccc-------ccccceee
Confidence            999998877766665 444333 4445555555 7999999999999999866554443322100       00112334


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV  286 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
                      ...+.+      .+..+++++.|+.|++||+.......                                     .....
T Consensus       153 ~~~~~~------~~~~~~~~~~d~~i~~~~~~~~~~~~-------------------------------------~~~~~  189 (342)
T d1yfqa_         153 IFTMDT------NSSRLIVGMNNSQVQWFRLPLCEDDN-------------------------------------GTIEE  189 (342)
T ss_dssp             EEEEEE------CSSEEEEEESTTEEEEEESSCCTTCC-------------------------------------CEEEE
T ss_pred             eeeeec------cCCceeeecCCCcEEEEecccCcccc-------------------------------------eeeee
Confidence            455555      68899999999999999998643211                                     11122


Q ss_pred             cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec------chhhhhhhhcccccceeeeeecCCCCCcE
Q 017194          287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS------INNDLLIKNINLNKKVNWLCTTPTESENL  360 (375)
Q Consensus       287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  360 (375)
                      ..+...+.+..+.+  .++..+++++.||.+.+|+..........      ..........+|...+++++|+| ++++|
T Consensus       190 ~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l  266 (342)
T d1yfqa_         190 SGLKYQIRDVALLP--KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFL  266 (342)
T ss_dssp             CSCSSCEEEEEECS--GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCE
T ss_pred             cccccceeeeEeec--CCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEE
Confidence            23344555555553  67789999999999999998765332110      01112223456778899999999 89999


Q ss_pred             EEeeCCCeEEEEecC
Q 017194          361 VVCDTSKVVKVYSIS  375 (375)
Q Consensus       361 ~s~~~dg~v~iw~~~  375 (375)
                      ++|+.||.|++||++
T Consensus       267 asg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         267 YTAGSDGIISCWNLQ  281 (342)
T ss_dssp             EEEETTSCEEEEETT
T ss_pred             EEECCCCEEEEEECC
Confidence            999999999999974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6.3e-33  Score=238.00  Aligned_cols=330  Identities=10%  Similarity=0.025  Sum_probs=222.3

Q ss_pred             EEecCC-CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc--cccc
Q 017194           22 IASRDR-PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR--PLES   98 (375)
Q Consensus        22 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~   98 (375)
                      .++.+. ..++++++.||+|+|||+.+++.+.++..|. .+..++|+|||+++++++.|+++++||+.+++...  .+..
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence            344442 2356888999999999999999999999764 58999999999999999999999999999876432  3344


Q ss_pred             ccCCCcceeEEEEcCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC---------
Q 017194           99 YNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---------  168 (375)
Q Consensus        99 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------  168 (375)
                      ..+|...+.+++|+|||++++++ ..++.+++||..+++.+..+. .|...+....+.+++....+..+.|         
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence            44566677888899999987555 478999999999998888777 6655554444444443223333333         


Q ss_pred             --CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeec
Q 017194          169 --SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISR  245 (375)
Q Consensus       169 --~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  245 (375)
                        +.+.+++.............            +...+..++++|      ++++++++. .+..+.+++..+......
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~------~g~~~~~a~~~~~~~~~~~~~~~~~~~~  244 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIG------------AAPFLADGGWDS------SHRYFMTAANNSNKVAVIDSKDRRLSAL  244 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEE------------CCSSEEEEEECT------TSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEEeccccceeeEEec------------cCCccEeeeECC------CCcEEEeeeecccceeeeecccccEEEE
Confidence              44444444444333222222            346788999999      788777776 556789999998776554


Q ss_pred             ccccCC-CCCCceee-------------cccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE-
Q 017194          246 SKSTTK-PLKGSQST-------------SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-  310 (375)
Q Consensus       246 ~~~~~~-~~~~~~~~-------------s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s-  310 (375)
                      ...... .......+             ++++...+.............+....+.+|...+..++|+   ||+++|++ 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s---Pdg~~l~v~  321 (426)
T d1hzua2         245 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH---PKSSHLYVD  321 (426)
T ss_dssp             EECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC---TTCSEEEEC
T ss_pred             eccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcC---CCCceEEEe
Confidence            332211 11112222             2222222211111111223345667888999999999999   99999994 


Q ss_pred             ------ecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEE-Ee----eCCCeEEEEecC
Q 017194          311 ------GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV-VC----DTSKVVKVYSIS  375 (375)
Q Consensus       311 ------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~----~~dg~v~iw~~~  375 (375)
                            ++.|++|+|||+.+++......+......+..|...+..++|+| ||++++ ++    +.||.|+|||.+
T Consensus       322 ~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         322 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             ecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECC
Confidence                  56689999999998854322211112223445777899999999 998764 32    468899999863

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-32  Score=224.72  Aligned_cols=249  Identities=13%  Similarity=0.119  Sum_probs=192.1

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec--CccEEEEEEeCCCCeEEEEcCCC
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      .+++.+++|++|+++|++++|+|+  .+|++|+.|++|++|+....+.......+  ........+.++++.+++++.|+
T Consensus        41 ~~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  118 (355)
T d1nexb2          41 INKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN  118 (355)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCcEEEEEECCCCCEEEEEEcCC--CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCC
Confidence            356778899999999999999986  58999999999999999988776555433  33445566788888899999999


Q ss_pred             eEEEEECCCCCcc------------------------------------------------------------ccccccc
Q 017194           81 EVKSFDVHMPASW------------------------------------------------------------RPLESYN  100 (375)
Q Consensus        81 ~i~iwd~~~~~~~------------------------------------------------------------~~~~~~~  100 (375)
                      .|++||+.+....                                                            +.+....
T Consensus       119 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  198 (355)
T d1nexb2         119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS  198 (355)
T ss_dssp             EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeee
Confidence            9999998653210                                                            0011122


Q ss_pred             CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194          101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR  180 (375)
Q Consensus       101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  180 (375)
                      ++...+.++.++|+++++++++.|+.|++||++++..+..+. +|...|.+++++++   +|++++.||.|++||+++..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCCCEEEECSS---EEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccceeeecccccceEEeeeccccccccccc-cccccccccccccc---eeeeeecccccccccccccc
Confidence            345667788999999999999999999999999999999999 99999999998753   79999999999999999876


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEe-ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceee
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIA-IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST  259 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  259 (375)
                      ......               ...+.++. +++      ++.++++| .||.|++||+++++..                
T Consensus       275 ~~~~~~---------------~~~~~~~~~~~~------~~~~l~~g-~d~~i~vwd~~tg~~~----------------  316 (355)
T d1nexb2         275 RKFSYH---------------HTNLSAITTFYV------SDNILVSG-SENQFNIYNLRSGKLV----------------  316 (355)
T ss_dssp             EEEEEE---------------CTTCCCCCEEEE------CSSEEEEE-ETTEEEEEETTTCCBC----------------
T ss_pred             eecccc---------------cCCceEEEEEcC------CCCEEEEE-eCCEEEEEECCCCCEE----------------
Confidence            554433               23344443 444      56666655 5899999999975321                


Q ss_pred             cccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          260 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       260 s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                             ...+.+|..+|.+++|+   |+ .++++++.||.++||.+
T Consensus       317 -----------------------~~~~~~~~~~V~~v~~~---~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         317 -----------------------HANILKDADQIWSVNFK---GK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             -----------------------CSCTTTTCSEEEEEEEE---TT-EEEEEEESSSCEEEEEE
T ss_pred             -----------------------EEEecCCCCCEEEEEEc---CC-eEEEEEECCCcEEEEEE
Confidence                                   12456789999999999   76 57888999998776643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-31  Score=220.13  Aligned_cols=285  Identities=16%  Similarity=0.163  Sum_probs=213.8

Q ss_pred             EecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe
Q 017194           43 FDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD  122 (375)
Q Consensus        43 w~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  122 (375)
                      |+..+.++.+.+++|.+.|.+ +++++|++|++|+.||+|++||+.+++   .+..+.+|...|.+++|+|+  +|++++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~---~~~~~~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC---EEEEEeCCCCCEEEEEeCCC--ccccce
Confidence            555667778899999999865 466779999999999999999998764   45566788999999999875  999999


Q ss_pred             CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC
Q 017194          123 DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP  202 (375)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (375)
                      .|+.+++|+........... .+...+......+.   .+..+..|+.+.+|+..+++....+...              
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~--------------  136 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLY-GHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGH--------------  136 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECC--------------
T ss_pred             ecccccccccccccceeccc-ccceeEeeeecccc---cccccccceeEEEeecccccceeeeecc--------------
Confidence            99999999998887766666 55556655554443   6888999999999999988877766533              


Q ss_pred             CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee---eeecCCcce
Q 017194          203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKR  279 (375)
Q Consensus       203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~  279 (375)
                      .... ....+      ....+++++.|+.|++||.............   .......++++.++++.+   ....++...
T Consensus       137 ~~~~-~~~~~------~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~  206 (342)
T d2ovrb2         137 VAAV-RCVQY------DGRRVVSGAYDFMVKVWDPETETCLHTLQGH---TNRVYSLQFDGIHVVSGSLDTSIRVWDVET  206 (342)
T ss_dssp             SSCE-EEEEE------CSSCEEEEETTSCEEEEEGGGTEEEEEECCC---SSCEEEEEECSSEEEEEETTSCEEEEETTT
T ss_pred             cccc-eeecc------ccceeeeecCCCeEEEeecccceeeEEEcCc---ccccccccCCCCEEEEEeCCCeEEEeeccc
Confidence            2222 22223      5778899999999999999876655444332   334556677787777522   222233334


Q ss_pred             eEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCc
Q 017194          280 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN  359 (375)
Q Consensus       280 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  359 (375)
                      .+.+..+.+|...+.+++++     +++|++++.||.|++||+...+..      ..+.....|...+.++.++   +++
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~-----~~~l~s~s~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~  272 (342)
T d2ovrb2         207 GNCIHTLTGHQSLTSGMELK-----DNILVSGNADSTVKIWDIKTGQCL------QTLQGPNKHQSAVTCLQFN---KNF  272 (342)
T ss_dssp             CCEEEEECCCCSCEEEEEEE-----TTEEEEEETTSCEEEEETTTCCEE------EEECSTTSCSSCEEEEEEC---SSE
T ss_pred             ceeeeEecccccceeEEecC-----CCEEEEEcCCCEEEEEeccccccc------ccccccceeeeceeecccC---CCe
Confidence            45667888999999988776     469999999999999999987543      2233344567777777774   469


Q ss_pred             EEEeeCCCeEEEEecC
Q 017194          360 LVVCDTSKVVKVYSIS  375 (375)
Q Consensus       360 l~s~~~dg~v~iw~~~  375 (375)
                      +++++.||.|++||++
T Consensus       273 ~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         273 VITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EEEEETTSEEEEEETT
T ss_pred             eEEEcCCCEEEEEECC
Confidence            9999999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-32  Score=228.87  Aligned_cols=272  Identities=10%  Similarity=0.142  Sum_probs=184.3

Q ss_pred             EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc---cccCCCcceeEE------EEcC-CCCeEEEEe
Q 017194           53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE---SYNYNKEEINQI------VCNP-KSSFLACAD  122 (375)
Q Consensus        53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~------~~~~-~~~~l~~~~  122 (375)
                      ..++|...|.++++++  +++++++.|++|++||..+.....+..   ....|...+..+      ..+. +..++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4468999999999864  689999999999999987644322111   112233332222      2222 234678899


Q ss_pred             CCCcEEEEeCcCceeeeeEe---------cCcccceeEEEEeeCCC----cEEEEeecCCeEEEeeCCCCCcc-------
Q 017194          123 DGGDVKIIDIRQHCLYKSLR---------AGHSSICSSVQFIPWKP----WEVISGGLDSKLVMWDFSKGRPN-------  182 (375)
Q Consensus       123 ~dg~i~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~-------  182 (375)
                      .||.|++|++........+.         ..+...+..++|.++..    .++++++.||.+++||+......       
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            99999999986443221111         02445677888887642    26899999999999998532210       


Q ss_pred             --eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeec
Q 017194          183 --KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS  260 (375)
Q Consensus       183 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s  260 (375)
                        ......    ........+...+.+++|+|      ++ +|++|+.||.|++||+.+++....               
T Consensus       167 ~~~~~~~~----~~~~~~~~~~~~~~~v~~s~------dg-~lasgs~Dg~i~iwd~~~~~~~~~---------------  220 (393)
T d1sq9a_         167 WSPTLELQ----GTVESPMTPSQFATSVDISE------RG-LIATGFNNGTVQISELSTLRPLYN---------------  220 (393)
T ss_dssp             CCCEEEEE----EEECCSSSSCCCCCEEEECT------TS-EEEEECTTSEEEEEETTTTEEEEE---------------
T ss_pred             eccceecc----cceecccCCCCcEEEEEECC------CC-EEEEEeCCCcEEEEeecccccccc---------------
Confidence              000000    00011112345688999998      55 899999999999999997643322               


Q ss_pred             ccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC---eEEEEeCCCceeeeec----ch
Q 017194          261 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTS----IN  333 (375)
Q Consensus       261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~----~~  333 (375)
                                         .+....+.+|..+|++++|+   |+|++|++|+.|+   .|++||+++++.....    ..
T Consensus       221 -------------------~~~~~~l~~h~~~V~~l~~s---pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~  278 (393)
T d1sq9a_         221 -------------------FESQHSMINNSNSIRSVKFS---PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS  278 (393)
T ss_dssp             -------------------EECCC---CCCCCEEEEEEC---SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             -------------------cccccccccccceEEEcccc---cccceeeeecCCCCcceeeecccccceeeeeecccccc
Confidence                               23334677899999999999   9999999999887   5999999988655322    22


Q ss_pred             hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          334 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ........+|.+.|++++|+| ++++|+|++.|++|++||++
T Consensus       279 ~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         279 SQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             -----CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred             ccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECC
Confidence            234445678999999999999 99999999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-30  Score=211.06  Aligned_cols=251  Identities=17%  Similarity=0.269  Sum_probs=200.3

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV   82 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i   82 (375)
                      .+++.+++|++|.++|++++|  + +++|++|+.|+.|++|++..+........+....  ..+.+....++++..++.+
T Consensus        43 ~~~~~~~~l~~H~~~V~~v~~--~-~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  117 (293)
T d1p22a2          43 NTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSI  117 (293)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCE
T ss_pred             CCCcEEEEEecCCCCEeeeec--c-cceeeccccccccccccccccccccccccccccc--ccccccccceeecccccce
Confidence            356778899999999999887  4 6799999999999999999988776665544433  3445566789999999999


Q ss_pred             EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194           83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      .+|+..+.........+..|...+..+.+.+  ..+++++.|+.|++||+++++.+..+. ++...+..+.+++  . .+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~--~-~l  191 (293)
T d1p22a2         118 AVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYRD--R-LV  191 (293)
T ss_dssp             EEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEET--T-EE
T ss_pred             eEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEc-ccccccccccCCC--C-eE
Confidence            9999987766666666777788888877765  478889999999999999999999999 8888888887764  3 79


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN  242 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  242 (375)
                      ++++.|+.|++||+++.+.+......             ...+..+  .+      ++.+|++++.||.|++||+.+...
T Consensus       192 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~~--~~------~~~~l~sg~~dg~i~iwd~~~~~~  250 (293)
T d1p22a2         192 VSGSSDNTIRLWDIECGACLRVLEGH-------------EELVRCI--RF------DNKRIVSGAYDGKIKVWDLVAALD  250 (293)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCC-------------SSCEEEE--EC------CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred             EEecCCCEEEEEecccceeeeeeccc-------------ceeeeec--cc------cceEEEEEcCCCEEEEEECCCCcc
Confidence            99999999999999998887776532             3445443  33      688999999999999999875432


Q ss_pred             eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                      .....                               ....+..+.+|...|.+++|+     +++|++|+.||+|+|||
T Consensus       251 ~~~~~-------------------------------~~~~~~~~~~H~~~V~~v~~d-----~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         251 PRAPA-------------------------------GTLCLRTLVEHSGRVFRLQFD-----EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTSCT-------------------------------TTTEEEEECCCSSCCCCEEEC-----SSCEEECCSSSEEEEEC
T ss_pred             ccccC-------------------------------CceeeEEecCCCCCEEEEEEc-----CCEEEEEecCCEEEEeC
Confidence            21111                               113455788999999999875     46899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.5e-30  Score=206.92  Aligned_cols=241  Identities=10%  Similarity=0.128  Sum_probs=185.9

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM   89 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~   89 (375)
                      ..++|...|.+++++++  ..+++++.|+++++|++...+       ....+..+++++++..++++. ++.+.+|+..+
T Consensus        41 ~~~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  110 (287)
T d1pgua2          41 MHQDHSNLIVSLDNSKA--QEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFT  110 (287)
T ss_dssp             EECCCCSCEEEEECCST--TCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTT
T ss_pred             CCCCCCCCEEEEEecCC--CeEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEee-cccceeeeccc
Confidence            45689999999999875  468999999999999976432       345677888998887666554 67788999887


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC-cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD  168 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  168 (375)
                      ++....+..    ...  ..++++++..+++++.++ .+++|++...+....+...|...+++++|+|++. +|++++.|
T Consensus       111 ~~~~~~~~~----~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~d  183 (287)
T d1pgua2         111 GDIIKSVRL----NSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVM  183 (287)
T ss_dssp             CCEEEEEEC----SSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             eeeeeeccc----cce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-cccccccc
Confidence            654433321    223  345667778888887765 7999999876665555535788999999999998 79999999


Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc----cccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD----MLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      |.|++||+.+++........            |...|.+++|+|..    ....++.++++|+.|+.|++||++++.   
T Consensus       184 g~i~i~d~~~~~~~~~~~~~------------h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~---  248 (287)
T d1pgua2         184 GKILLYDLQSREVKTSRWAF------------RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---  248 (287)
T ss_dssp             SCEEEEETTTTEEEECCSCC------------CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT---
T ss_pred             ccccceeecccccccccccc------------cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC---
Confidence            99999999887755433223            57889999999852    123467899999999999999997531   


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC  322 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~  322 (375)
                                                          +.+..+.+|...|++++|+   |++ .|++++.|+.|++|++
T Consensus       249 ------------------------------------~~~~~~~~h~~~V~~v~~~---~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 ------------------------------------KIIKALNAHKDGVNNLLWE---TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ------------------------------------CCEEETTSSTTCEEEEEEE---ETT-EEEEEETTSCEEEEEE
T ss_pred             ------------------------------------eEEEEeCCCCCCeEEEEEC---CCC-EEEEEECCCeEEEEEE
Confidence                                                2344677899999999999   776 5889999999999986

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=1e-28  Score=211.20  Aligned_cols=197  Identities=13%  Similarity=0.109  Sum_probs=157.8

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc--cccccccCCCcce
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLESYNYNKEEI  106 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v  106 (375)
                      -++++.+.+|+|.|||..+++.+..+..+ ..+..++|+|||+++++++.|+.+++||+.+++..  ..+.....|.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            34689999999999999999999999876 46899999999999999999999999999876532  3344444556677


Q ss_pred             eEEEEcCCCCeE-EEEeCCCcEEEEeCcCceeeeeEecCc-----------ccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194          107 NQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGH-----------SSICSSVQFIPWKPWEVISGGLDSKLVMW  174 (375)
Q Consensus       107 ~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d~~i~~w  174 (375)
                      .+..|+|||++| ++++.++.|++||..+++.+..+. .+           ......+.++|+++.++++...++.|.+|
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS-TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE-CCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeec-cCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            778889999986 677789999999999998887765 43           34556788999998666778889999999


Q ss_pred             eCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCcceeec
Q 017194          175 DFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISR  245 (375)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~  245 (375)
                      |..+.+........            ....+..++|+|      +++++++++. ++.+.++|..+.+....
T Consensus       191 d~~~~~~~~~~~i~------------~g~~~~~~~~sp------dg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         191 DYTDLNNLKTTEIS------------AERFLHDGGLDG------SHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             ETTCSSEEEEEEEE------------CCSSEEEEEECT------TSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EccCCCcceEEEEc------------ccCccccceECC------CCCEEEEeccccceEEEeecccceEEEE
Confidence            99887765544433            346788999999      7998777765 56889999987665544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.3e-29  Score=212.58  Aligned_cols=165  Identities=10%  Similarity=0.010  Sum_probs=135.1

Q ss_pred             CCCeeeecCCCceeEEEEecCCCCEEEEeCCC--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194            6 AKPRRLRGHKATATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus         6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      +.+..+ +|...|.+++|+|| ++.|++++.+  ..|++||.++++. ..+..|...|.+++|+|++++|++++.++.++
T Consensus        34 ~~~~~~-~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~  110 (360)
T d1k32a3          34 TYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIM  110 (360)
T ss_dssp             SBEEEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CcEEEc-cCCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccc
Confidence            334444 69999999999999 7888776654  3799999988764 45677999999999999999999999999999


Q ss_pred             EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe----------CCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194           84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD----------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ  153 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  153 (375)
                      +|++.+++...   .+..|...+.+++|+|++++|+.+.          .++.+++||+.+++......  +...+..++
T Consensus       111 ~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~  185 (360)
T d1k32a3         111 TVDLETGKPTV---IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPA  185 (360)
T ss_dssp             EEETTTCCEEE---EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEE
T ss_pred             cccccccceee---eeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc--ccccccccc
Confidence            99998765433   3445678899999999999998654          34569999998887655544  677889999


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCC
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKG  179 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~  179 (375)
                      |+|+|+ .|++++.++.+.+||....
T Consensus       186 ~spdg~-~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         186 FDADSK-NLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             ECTTSC-EEEEEESCCCCCEECSSSS
T ss_pred             ccCCCC-EEEEEeCCCceEccccccc
Confidence            999999 7999999999999997653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=1.5e-26  Score=188.81  Aligned_cols=263  Identities=14%  Similarity=0.126  Sum_probs=201.3

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCcccccccccCCCcceeEE
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI  109 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  109 (375)
                      .++++.|++|.+||+++++.++++... ..+..++|+|+|++|+ +++.++.|++||+.+++....+.   .+ ..+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~-~~~~~~   79 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AG-SSPQGV   79 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CS-SSEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cc-cccccc
Confidence            456788999999999999999888754 5578999999999874 66678999999999876544433   32 456889


Q ss_pred             EEcCCCCeEEE-EeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          110 VCNPKSSFLAC-ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       110 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      .|++++..+++ +..++.+.+|+..+++....+.  +......+.|+|++..+++++..++.+.+|+..+.+....+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ccccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            99999987655 5567789999999999888887  45577889999999866677778899999999999888887733


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-CcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                                    ..+..++++|      +++.+++++.+ +.+.+|+.....                          
T Consensus       158 --------------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  191 (301)
T d1l0qa2         158 --------------RSPKGIAVTP------DGTKVYVANFDSMSISVIDTVTNS--------------------------  191 (301)
T ss_dssp             --------------SSEEEEEECT------TSSEEEEEETTTTEEEEEETTTTE--------------------------
T ss_pred             --------------CCceEEEeec------cccceeeeccccccccccccccee--------------------------
Confidence                          5678899998      68877777755 566677766531                          


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec---CCCeEEEEeCCCceeeeecchhhhhhhhcccc
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLN  344 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  344 (375)
                                    ....... ...+..++++   ++++.++.++   .++.|++||+.+++         ++..+ .+.
T Consensus       192 --------------~~~~~~~-~~~~~~~~~~---~~g~~~~v~~~~~~~~~v~v~D~~t~~---------~~~~~-~~~  243 (301)
T d1l0qa2         192 --------------VIDTVKV-EAAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTNK---------ITARI-PVG  243 (301)
T ss_dssp             --------------EEEEEEC-SSEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTTE---------EEEEE-ECC
T ss_pred             --------------eeecccc-cCCcceeecc---ccccccccccccceeeeeeeeecCCCe---------EEEEE-cCC
Confidence                          1122222 3456778899   8888776543   45789999999984         33232 234


Q ss_pred             cceeeeeecCCCCCcE-EEeeCCCeEEEEecC
Q 017194          345 KKVNWLCTTPTESENL-VVCDTSKVVKVYSIS  375 (375)
Q Consensus       345 ~~v~~~~~~~~~~~~l-~s~~~dg~v~iw~~~  375 (375)
                      ..+.+++|+| ||++| ++++.|+.|++||++
T Consensus       244 ~~~~~va~sp-dg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         244 PDPAGIAVTP-DGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SSEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             CCEEEEEEeC-CCCEEEEEECCCCeEEEEECC
Confidence            5678999999 99876 577789999999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=2.4e-26  Score=190.54  Aligned_cols=280  Identities=9%  Similarity=0.031  Sum_probs=193.8

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeec--CccEEEEEEeCCCCeE-EEEcCCCeEEEEECCCCCccccccccc--CCC
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYN--YNK  103 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~  103 (375)
                      +++++++.|++|.+||+++++.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++....+....  .+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999999888754  4567899999999987 456778999999999877655443321  123


Q ss_pred             cceeEEEEcCCCCeEEEEe------------CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194          104 EEINQIVCNPKSSFLACAD------------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL  171 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  171 (375)
                      ..+..++|+|++++++++.            .+..+.+||..+++....+.  +...+..++|+|+++ ++++++.  .+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~~~--~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGS-KLYGLGR--DL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSS-CEEEESS--SE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCC-EEEEEcC--Cc
Confidence            4566899999999988775            35788999999999988887  456788999999999 5777654  47


Q ss_pred             EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc-----------cCCCCEEEEEecCCcEEEEeCCCc
Q 017194          172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML-----------DKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      .+||..+++....+.........    .   .......+.+....           ..+......+..++.+.+|+..++
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAET----Y---AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTT----B---CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             ceeeeecCcEEEEeecCCccccc----e---ecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            78999998888777644111000    0   00000001000000           001111111222334555555542


Q ss_pred             ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194          241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW  320 (375)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw  320 (375)
                      .                                       .....+..+...+..++++   +++.+++.+  ++.|++|
T Consensus       230 ~---------------------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~i~v~  265 (337)
T d1pbyb_         230 E---------------------------------------MAMREVRIMDVFYFSTAVN---PAKTRAFGA--YNVLESF  265 (337)
T ss_dssp             C---------------------------------------EEEEEEEECSSCEEEEEEC---TTSSEEEEE--ESEEEEE
T ss_pred             c---------------------------------------EEEEEecCCCcceEEEEec---ccceEEEEc--cccEEEE
Confidence            1                                       1112344556678888888   898888766  5889999


Q ss_pred             eCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          321 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       321 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      |+.+++.         +.. ..+...+.+++|+| ||++|++++.|+.|++||.+
T Consensus       266 d~~~~~~---------~~~-~~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         266 DLEKNAS---------IKR-VPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             ETTTTEE---------EEE-EECSSCCCEEEECT-TSCEEEEESBSSEEEEEETT
T ss_pred             ECCCCcE---------EEE-EcCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECC
Confidence            9999843         222 24566789999999 99999999999999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=4.1e-26  Score=189.83  Aligned_cols=301  Identities=8%  Similarity=-0.006  Sum_probs=193.3

Q ss_pred             EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCccccccc
Q 017194           21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      ++|+++ +++|++++.+++|.+||+.+++.+.++.. +...+.+++|+|||++++ ++..++.|++||+.+++....+..
T Consensus         2 ~a~~~~-~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCC-CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            467888 89999999999999999999999988874 566788999999999874 556789999999998765443332


Q ss_pred             cc---CCCcceeEEEEcCCCCeEEEEe------------CCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEE
Q 017194           99 YN---YNKEEINQIVCNPKSSFLACAD------------DGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        99 ~~---~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l  162 (375)
                      ..   .+...+..++|+|||+++++++            .++.+.+||..+++....+.. .....+..+.+++++. ++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE-EE
Confidence            11   1123467899999999988765            467899999888766544431 1233456666777765 44


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE-EEecCCcEEEEeCCCcc
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESEL  241 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~  241 (375)
                      +. +  +.+.+||+.+++.+..+..+              .....+.++|      ++..++ .+..++.+.+++.....
T Consensus       160 ~~-~--~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
T d1jmxb_         160 VA-G--PDIYKMDVKTGKYTVALPLR--------------NWNRKGYSAP------DVLYFWPHQSPRHEFSMLYTIARF  216 (346)
T ss_dssp             EE-S--SSEEEECTTTCCEEEEECST--------------TCCCTTBCCC------BCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             Ee-C--CcceEEEccCCCEEEEEecC--------------CCccceEEec------cccEEEEEecCCCceEeeeeeeee
Confidence            43 2  46899999999888877644              2233344444      233222 22223333333322100


Q ss_pred             eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194          242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD  321 (375)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd  321 (375)
                      ......         +....   .......++....  .........|...+..+.++   +++.+++.... +.|.+||
T Consensus       217 ~~~~~~---------~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~v~v~d  278 (346)
T d1jmxb_         217 KDDKQD---------PATAD---LLYGYLSVDLKTG--KTHTQEFADLTELYFTGLRS---PKDPNQIYGVL-NRLAKYD  278 (346)
T ss_dssp             ----------------CCCE---EEEEEEEEETTTC--CEEEEEEEECSSCEEEEEEC---SSCTTEEEEEE-SEEEEEE
T ss_pred             ccCcee---------Eeecc---CCceEEEEECCCC--ceEEEEeecccceeEEEEEe---CCCCEEEEecC-CeEEEEE
Confidence            000000         00000   0000000111101  11222444567778888888   78888877664 6799999


Q ss_pred             CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194          322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS  375 (375)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~  375 (375)
                      ..+++         .+... .+...+.+++|+| ||++|++++.|+.|++||++
T Consensus       279 ~~~~~---------~~~~~-~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         279 LKQRK---------LIKAA-NLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             TTTTE---------EEEEE-ECSSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred             CCCCc---------EEEEE-cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECc
Confidence            99984         33222 3445789999999 99999999999999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.4e-25  Score=191.53  Aligned_cols=303  Identities=10%  Similarity=-0.030  Sum_probs=193.7

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEe---eecCccEEEEEEeCCCCeE-EEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVT---DVGNGPVTSLCFKSGNEDI-IYV   76 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~---~~~~~~v~~l~~~~~~~~l-~~~   76 (375)
                      ++++.++++..|. .+..++|+|| |+++++++.|++|++||+.+++..  ..+   ..|...+.+..|+|||++| +++
T Consensus        50 ~t~~v~~~~~~g~-~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~  127 (432)
T d1qksa2          50 STYEIKTVLDTGY-AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA  127 (432)
T ss_dssp             TTCCEEEEEECSS-CEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc
Confidence            4678888898774 6899999999 899999999999999999887643  233   3455666777888999986 667


Q ss_pred             cCCCeEEEEECCCCCcccccccc--------cCCCcceeEEEEcCCCCeEE-EEeCCCcEEEEeCcCceeeeeEecCccc
Q 017194           77 SSGKEVKSFDVHMPASWRPLESY--------NYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSS  147 (375)
Q Consensus        77 ~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~  147 (375)
                      ..++.|++||..+++....+...        ..+......+.++|++..++ +...++.|.+||..+.+........+..
T Consensus       128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~  207 (432)
T d1qksa2         128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER  207 (432)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred             CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC
Confidence            77899999999987654433211        12345667889999998764 5567899999999877654332212566


Q ss_pred             ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCC-------------------------------C
Q 017194          148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN-------------------------------A  196 (375)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-------------------------------~  196 (375)
                      .+..++|+|+|+++++++..+..+.++|..+++....+..+.......                               .
T Consensus       208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            788999999999655666677799999999887777665442110000                               0


Q ss_pred             CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeee---ee
Q 017194          197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LD  273 (375)
Q Consensus       197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~---~~  273 (375)
                      ....+...+....++|      ++..+++++.++..++|+..+...       ......++++ ||++.++..+.   ..
T Consensus       288 ~~~~~~~~v~~~~~~~------~g~~~~~~s~p~~~~lw~~~~~~~-------~~~~~~sv~v-pDg~~la~~s~d~~~k  353 (432)
T d1qksa2         288 GHPDNAWKILDSFPAL------GGGSLFIKTHPNSQYLYVDATLNP-------EAEISGSVAV-FDIKAMTGDGSDPEFK  353 (432)
T ss_dssp             TCTTTBTSEEEEEECS------CSCCCCEECCTTCSEEEEECTTCS-------SHHHHTCEEE-EEGGGCCCSSSCCCEE
T ss_pred             cccccccEEEEEEEcC------CCCeEEEEecCCccceeecccCCC-------CCCeeeEEEE-EechhhcccccCCceE
Confidence            0000111222233333      444555555555555554432110       0011122332 66666653211   00


Q ss_pred             cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe-----cCCCeEEEEeCCCcee
Q 017194          274 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-----GNDKLVKVWDCSRFQG  327 (375)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~  327 (375)
                      .++....   ..+..|...+.+++||   |||++++.+     ..+|.|.|||.++.+.
T Consensus       354 ~w~~~~~---~~l~~~~~~v~~~~fS---~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         354 TLPIAEW---AGITEGQPRVVQGEFN---KDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             EECHHHH---HTCCSSCCEEEEEEEC---TTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             ecccccc---cccCCCCCcEEEeEEC---CCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            1110000   2344677789999999   999988554     2578999999999854

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=2.2e-23  Score=169.74  Aligned_cols=252  Identities=10%  Similarity=0.076  Sum_probs=192.6

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEE-EEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCC
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGK   80 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~   80 (375)
                      ++++.++++... ..+..++|+|| +++| ++++.++.|++||+.+++.+..+..+. .+..++|++++..+++ +..++
T Consensus        20 ~t~~~~~~i~~g-~~p~~va~spd-G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   96 (301)
T d1l0qa2          20 TSNKVTATIPVG-SNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASS   96 (301)
T ss_dssp             TTTEEEEEEECS-SSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCeEEEEEECC-CCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccc
Confidence            456666777644 45688999999 7765 677788999999999999999888765 4688999999986655 45667


Q ss_pred             eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEE-EeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194           81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC-ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP  159 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (375)
                      .+.+|+..+++....+..    .....++.|+|+++.++. +..++.+.+|+..+.+.+..+.  +...+..++++|++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  170 (301)
T d1l0qa2          97 TLSVIDTTSNTVAGTVKT----GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGT  170 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSS
T ss_pred             eeeecccccceeeeeccc----cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--cCCCceEEEeecccc
Confidence            999999987654444433    456788999999988754 5567889999999999888887  445688999999998


Q ss_pred             cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---CCcEEEEe
Q 017194          160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVIN  236 (375)
Q Consensus       160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d  236 (375)
                      .++++...++.+.+|+....+........              ..+..+++++      +++.++++..   ++.|++||
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~------~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         171 KVYVANFDSMSISVIDTVTNSVIDTVKVE--------------AAPSGIAVNP------EGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS--------------SEEEEEEECT------TSSEEEEEEECSSCCEEEEEE
T ss_pred             ceeeecccccccccccccceeeeeccccc--------------CCcceeeccc------cccccccccccceeeeeeeee
Confidence            54444455678888888877776666633              5678899988      6887776643   46899999


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEE-EEecCCC
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDK  315 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l-~s~~~dg  315 (375)
                      +.+++                                        .+..+.. ...+..++|+   |||++| ++++.|+
T Consensus       231 ~~t~~----------------------------------------~~~~~~~-~~~~~~va~s---pdg~~l~va~~~~~  266 (301)
T d1l0qa2         231 TGTNK----------------------------------------ITARIPV-GPDPAGIAVT---PDGKKVYVALSFCN  266 (301)
T ss_dssp             TTTTE----------------------------------------EEEEEEC-CSSEEEEEEC---TTSSEEEEEETTTT
T ss_pred             cCCCe----------------------------------------EEEEEcC-CCCEEEEEEe---CCCCEEEEEECCCC
Confidence            98752                                        2223333 3457899999   999976 6788899


Q ss_pred             eEEEEeCCCcee
Q 017194          316 LVKVWDCSRFQG  327 (375)
Q Consensus       316 ~i~iwd~~~~~~  327 (375)
                      .|++||+++++.
T Consensus       267 ~i~v~D~~t~~~  278 (301)
T d1l0qa2         267 TVSVIDTATNTI  278 (301)
T ss_dssp             EEEEEETTTTEE
T ss_pred             eEEEEECCCCeE
Confidence            999999999853

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.6e-24  Score=184.04  Aligned_cols=303  Identities=12%  Similarity=0.062  Sum_probs=199.6

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe-----eecCccEEEEEEeCCCCeEEEE-
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-----DVGNGPVTSLCFKSGNEDIIYV-   76 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~-   76 (375)
                      .+++.++++..|. .+..++|+|| |++|++++.|++|++||+.+++.....     .+|...+.+++|+|||++++++ 
T Consensus        50 ~t~~~~~~l~~g~-~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          50 DSKKIVKVIDTGY-AVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             TTCSEEEEEECCS-SEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee
Confidence            4677888998875 5899999999 899999999999999999988754332     2456667788889999987655 


Q ss_pred             cCCCeEEEEECCCCCcccccccc--------cCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeee-eEecCcc
Q 017194           77 SSGKEVKSFDVHMPASWRPLESY--------NYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYK-SLRAGHS  146 (375)
Q Consensus        77 ~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~~~  146 (375)
                      ..++.+.+||..++.....+...        ..+......+.+++++..++.... .+.+.+++......+. ... .+.
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~  206 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAA  206 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-ECC
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe-ccC
Confidence            46899999999876544332211        012334456677777776665543 4566666665544322 222 477


Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE-EE
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VV  225 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l-~~  225 (375)
                      ..+..+.|+|++++++++...+..+.+++..+++.......+.           .+.......+.+.    ..+... +.
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~~~~~~~  271 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-----------TPHPGRGANFVHP----KYGPVWSTS  271 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS-----------CCCCSCCEEEEET----TTEEEEEEE
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC-----------cccccceeeeecC----CCCceEEec
Confidence            7899999999999656666678889999999998888777541           1111222222220    012222 22


Q ss_pred             EecCCcEEEEeCCCcc-------eeecccccCCCCCCceeecccccceee-------------eeeeecCCcceeEee--
Q 017194          226 AKGDGVVDVINIESEL-------NISRSKSTTKPLKGSQSTSKVNIRDAE-------------MEILDQSGGKRLHLD--  283 (375)
Q Consensus       226 ~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~s~~g~~~~~-------------~~~~~~~~~~~~~~~--  283 (375)
                      .+.++.+.+|+.....       ....+ ......+..++++|||++++.             ...++.........+  
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l-~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEE-ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             cCCCceEEEeeccccccccccceEeEEE-ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence            3457778787766432       22222 223455788999999999984             233444333222111  


Q ss_pred             ----eeecCCCccEEEEEEeecCCCCcEEE-E----ecCCCeEEEEeCCCcee
Q 017194          284 ----YSVGGHTAAASCVAFSMFGERGKYLI-S----GGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       284 ----~~~~~~~~~v~~~~~s~~~~~~~~l~-s----~~~dg~i~iwd~~~~~~  327 (375)
                          ..+..|...|..++||   |||++++ +    ++.+|.|+|||.++.+.
T Consensus       351 ~~~~~~~~~~~~rv~~~~fS---pDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYN---KRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEEC---SSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             cchhcccCCCCccEEEEEEC---CCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence                1234556779999999   9998774 3    24689999999999843

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=5.3e-23  Score=169.99  Aligned_cols=291  Identities=12%  Similarity=0.072  Sum_probs=189.7

Q ss_pred             EEEEeCCCCcEEEEecccCceeeEee--ecCccEEEEEEeCCCCeEEEEc-CCCeEEEEECCCCCcccccccccCCCcce
Q 017194           30 FVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEI  106 (375)
Q Consensus        30 ~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  106 (375)
                      .+++++.|++|++|++++...+..++  .|...+..|+|+|||++|++++ .|+.|++|++........+.....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            45778899999999997654433333  5788999999999999986555 58999999998654333333323334567


Q ss_pred             eEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeee--EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194          107 NQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKS--LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK  183 (375)
Q Consensus       107 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  183 (375)
                      ..++|+|||++|++++. ++.+.+|+.........  .. .+...+.++.++|++++++.....+..+.+|+........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceeccccc-CCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            88999999999998874 67899998876544332  33 4667788999999998545555567789999987765443


Q ss_pred             EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194          184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV  262 (375)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~  262 (375)
                      ......       ...........++|++      ++..++... ..+...+++...........               
T Consensus       165 ~~~~~~-------~~~~~g~~p~~i~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------  216 (333)
T d1ri6a_         165 AQDPAE-------VTTVEGAGPRHMVFHP------NEQYAYCVNELNSSVDVWELKDPHGNIECV---------------  216 (333)
T ss_dssp             EEEEEE-------EECSTTCCEEEEEECT------TSSEEEEEETTTTEEEEEESSCTTSCCEEE---------------
T ss_pred             eeecee-------eeeecCCCccEEEEec------cceeEEeeccccCceEEEeecccccceeee---------------
Confidence            222110       0000234567899988      577666554 55677888765421110000               


Q ss_pred             ccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE-ecCCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194          263 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  341 (375)
Q Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  341 (375)
                                     ..................++++   +++++++. +..++.+.+|++......      .......
T Consensus       217 ---------------~~~~~~~~~~~~~~~~~~~~~s---~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  272 (333)
T d1ri6a_         217 ---------------QTLDMMPENFSDTRWAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSV------LSKEGFQ  272 (333)
T ss_dssp             ---------------EEEECSCTTCCSCCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCC------EEEEEEE
T ss_pred             ---------------eeeeeeecCCCccccceeEEEe---cccCceeeecccCCeEEEEEEcCCCCE------EEEEEEe
Confidence                           0000000111223456778888   88886654 566789999998765321      1111122


Q ss_pred             ccccceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194          342 NLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI  374 (375)
Q Consensus       342 ~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~  374 (375)
                      .....+.+++|+| ||++|++++ .++.|++|++
T Consensus       273 ~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         273 PTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             ECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred             CCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEE
Confidence            3345678899999 999877765 5689999965

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.91  E-value=2e-21  Score=163.07  Aligned_cols=303  Identities=11%  Similarity=-0.018  Sum_probs=198.3

Q ss_pred             eecCCCceeEEEEecCCCCEEEEe-----CCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-------
Q 017194           11 LRGHKATATCCIASRDRPGFVASS-----GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-------   78 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-------   78 (375)
                      ...+.+++.+++++|| ++.++..     +..+.|.+||..+++.+.++..+..+  .++|+|||++|++++.       
T Consensus        16 ~~~~~~p~~~~a~spd-g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          16 AGAADGPTNDEAPGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             cccCCCCccccccCCC-CCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence            4468899999999999 6766543     23467999999999999988766544  7999999999988753       


Q ss_pred             ---CCeEEEEECCCCCcccccccccCC----CcceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccce
Q 017194           79 ---GKEVKSFDVHMPASWRPLESYNYN----KEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSIC  149 (375)
Q Consensus        79 ---d~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v  149 (375)
                         ++.|.+||..+++....+......    ......+.|+++++.++...  .++.+.+|+....+.....     ...
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~  167 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-----SSP  167 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-----ccc
Confidence               578999999987654443322110    11224578899988766554  4567889998777665443     345


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD  229 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d  229 (375)
                      .++.++|+++..+++.+.|+.+.+||...++...........       .........+.+.+       +..++..+.+
T Consensus       168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~~~  233 (373)
T d2madh_         168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT-------AAQNLLTQPAQANK-------SGRIVWPVYS  233 (373)
T ss_pred             eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc-------cCccceeeeEEECC-------CceEEEecCC
Confidence            788999999877889999999999999988776655422100       00112233444544       4455566678


Q ss_pred             CcEEEEeCCCcceeecccccCC-CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee-------c
Q 017194          230 GVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM-------F  301 (375)
Q Consensus       230 g~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~  301 (375)
                      +.+.+|+..+............ .......+.|                             .....+++++       .
T Consensus       234 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~d~~~~~~~  284 (373)
T d2madh_         234 GKILQADISAAGATNKAPIDALSGGRKADTWRP-----------------------------GGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             ceEEEEEcCCCeEEEEEeeccccCcEEeeeecc-----------------------------CcceeeEEecCCCeEEEe
Confidence            8999999887543221111000 0000000111                             1112222220       0


Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCc--EEEeeCCCeEEEEecC
Q 017194          302 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN--LVVCDTSKVVKVYSIS  375 (375)
Q Consensus       302 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~s~~~dg~v~iw~~~  375 (375)
                      ..++..+++...++.+.+||..+++         .+. ...+...+..++|+| ||+.  +++++.|+.|++||+.
T Consensus       285 ~~~~~~~~~~~~~~~v~~~d~~t~~---------~~~-~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         285 TSEQSAWKLHAAAKEVTSVTGLVGQ---------TSS-QISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             cCCCceEEeecCCCeEEEEECCCCc---------EEE-EecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence            0345566677778899999999984         332 234667789999999 9884  4678899999999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.8e-22  Score=166.90  Aligned_cols=251  Identities=13%  Similarity=0.086  Sum_probs=179.2

Q ss_pred             CCCCCeeeecC--CCceeEEEEecCCCCEE-EEeCCCCcEEEEecccCceeeEeeecC-----ccEEEEEEeCCCCeEEE
Q 017194            4 AEAKPRRLRGH--KATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGN-----GPVTSLCFKSGNEDIIY   75 (375)
Q Consensus         4 ~~~~~~~l~~h--~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~~   75 (375)
                      +++.++++..+  ...+.+++|+|| |+++ ++++.++.|.+||+.+++.+..+..+.     ..+..++|+|+++++++
T Consensus        20 s~~~~~~i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~   98 (337)
T d1pbyb_          20 KMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             CCeEEEEEECCCCCCCccEEEECCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEE
Confidence            45566667643  455789999999 7776 677889999999999999988877553     34557899999999987


Q ss_pred             EcC------------CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec
Q 017194           76 VSS------------GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA  143 (375)
Q Consensus        76 ~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  143 (375)
                      +..            +..+.+||..+++....+..    ...+..++|+|+++++++++.  .+.+||..+++....+. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~-  171 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKP-  171 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEEC-
T ss_pred             eecCCcceeeeccccccceeeccccCCeEEEeccc----cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEee-
Confidence            763            56889999987654444332    456888999999999999864  57889999888877765 


Q ss_pred             CcccceeEEEEeeCCCc-----------------------EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCccc
Q 017194          144 GHSSICSSVQFIPWKPW-----------------------EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCY  200 (375)
Q Consensus       144 ~~~~~v~~~~~~~~~~~-----------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  200 (375)
                      .+.. .....+.|++..                       ....+..++.+.+||..+++.......+            
T Consensus       172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  238 (337)
T d1pbyb_         172 IQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI------------  238 (337)
T ss_dssp             STTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE------------
T ss_pred             cCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC------------
Confidence            2221 111112222110                       1122233456888998887755443323            


Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                      +...+..++++|      ++.+++.+  ++.|++||+.+.+.                                      
T Consensus       239 ~~~~~~~~~~~~------~~~~~~~~--~~~i~v~d~~~~~~--------------------------------------  272 (337)
T d1pbyb_         239 MDVFYFSTAVNP------AKTRAFGA--YNVLESFDLEKNAS--------------------------------------  272 (337)
T ss_dssp             CSSCEEEEEECT------TSSEEEEE--ESEEEEEETTTTEE--------------------------------------
T ss_pred             CCcceEEEEecc------cceEEEEc--cccEEEEECCCCcE--------------------------------------
Confidence            346677888888      68877765  47899999997532                                      


Q ss_pred             EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                        +..+ .+...+.+++|+   |||++|++++.|+.|++||..+.+.
T Consensus       273 --~~~~-~~~~~~~~~~~s---~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         273 --IKRV-PLPHSYYSVNVS---TDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             --EEEE-ECSSCCCEEEEC---TTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             --EEEE-cCCCCEEEEEEC---CCCCEEEEEeCCCcEEEEECCCCcE
Confidence              2222 234567899999   9999999999999999999999853

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5e-21  Score=159.49  Aligned_cols=296  Identities=13%  Similarity=0.041  Sum_probs=182.7

Q ss_pred             ceeEEEEecCCCCEEEEe-----CCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc----------CCCe
Q 017194           17 TATCCIASRDRPGFVASS-----GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKE   81 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~----------~d~~   81 (375)
                      ++.-.+.+|| ++.++..     ..+..|.+||..+++.+.++..+..+  .++|+|||++|++++          .++.
T Consensus         3 p~~~~a~spd-g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           3 PRILEAPAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCBCCCCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CcEeEeeCCC-CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            3444466898 6776654     34567999999999999988876544  799999999887654          3678


Q ss_pred             EEEEECCCCCcccccccccCC----CcceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194           82 VKSFDVHMPASWRPLESYNYN----KEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI  155 (375)
Q Consensus        82 i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  155 (375)
                      |++||..+++....+.....+    ......++|+|++++++++.  .+..+.+|+..+++.+..+. .+....   .+ 
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~-  154 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYH---IF-  154 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEE---EE-
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe-cCCcce---Ee-
Confidence            999999987665544332221    22345789999999888765  45789999999999888877 433211   11 


Q ss_pred             eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194          156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI  235 (375)
Q Consensus       156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  235 (375)
                      +.+....+..+.|+...++..........+.....       ...+...+....+.+      ++..++.++.++.+++|
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~  221 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-------HPEDEFLINHPAYSQ------KAGRLVWPTYTGKIHQI  221 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC-------SCTTSCBCSCCEEET------TTTEEEEEBTTSEEEEE
T ss_pred             ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc-------cceecceeeeccccC------CCCeEEEecCCCeEEEE
Confidence            11111344444555555544443333333321100       001223344455665      67888889999999999


Q ss_pred             eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC--
Q 017194          236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--  313 (375)
Q Consensus       236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~--  313 (375)
                      ++..+............                        ...    ............++++   +++..++....  
T Consensus       222 ~~~~~~~~~~~~~~~~~------------------------~~~----~~~~~~p~~~~~~~~~---~d~~~~~~~~~~~  270 (355)
T d2bbkh_         222 DLSSGDAKFLPAVEALT------------------------EAE----RADGWRPGGWQQVAYH---RALDRIYLLVDQR  270 (355)
T ss_dssp             ECTTSSCEECCCEESSC------------------------HHH----HHTTEEECSSSCEEEE---TTTTEEEEEEEEC
T ss_pred             ecCCCcEEEEeccCCcc------------------------cce----EeeeeeccceEEEEEe---CCCCeEEEEeccC
Confidence            99875432211100000                        000    0000001122346777   78877765543  


Q ss_pred             --------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCc--EEEeeCCCeEEEEecC
Q 017194          314 --------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN--LVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~s~~~dg~v~iw~~~  375 (375)
                              .+.|.+||..+++         .+..+ .+...+.+++|+| ||+.  +++++.|+.|++||++
T Consensus       271 ~~~~~~~~~~~v~v~d~~t~~---------~~~~~-~~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         271 DEWRHKTASRFVVVLDAKTGE---------RLAKF-EMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             CTTCTTSCEEEEEEEETTTCC---------EEEEE-EEEEEECEEEECC-SSSCEEEEEETTTTEEEEEETT
T ss_pred             CceeecCCCCeEEEEeCCCCc---------EEEEe-cCCCCEEEEEEcC-CCCeEEEEEECCCCEEEEEECC
Confidence                    2479999999984         33222 3456688999999 8873  4567789999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=9.9e-21  Score=156.91  Aligned_cols=255  Identities=11%  Similarity=0.104  Sum_probs=178.1

Q ss_pred             cCCCCCeeee-cCCCceeEEEEecCCCCEE-EEeCCCCcEEEEecccCceeeEeeecC------ccEEEEEEeCCCCeEE
Q 017194            3 DAEAKPRRLR-GHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGN------GPVTSLCFKSGNEDII   74 (375)
Q Consensus         3 ~~~~~~~~l~-~h~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~   74 (375)
                      ++++.+++++ .|...+.+++|+|| ++++ +++..++.|.+||+.+++.+..+....      ..+..++|+|||++++
T Consensus        26 ~t~~~~~t~~~~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          26 ASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             TTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             CCCCEEEEEEcCCCCCcceEEECCC-CCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEE
Confidence            3556677776 45667889999999 6765 667788999999999998877765422      3456899999999987


Q ss_pred             EEc------------CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe
Q 017194           75 YVS------------SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR  142 (375)
Q Consensus        75 ~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  142 (375)
                      +++            .++.+.+|+..+++....+..... ...+..+.+++++..++.+   +.+.+|++.+++.+..+.
T Consensus       105 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  180 (346)
T d1jmxb_         105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALP  180 (346)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEEC
T ss_pred             EEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEe
Confidence            765            367899999887665555444322 3456667777777665543   568999999888887776


Q ss_pred             cCcccceeEEEEeeCCCc-------------------------EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCC
Q 017194          143 AGHSSICSSVQFIPWKPW-------------------------EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG  197 (375)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~-------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  197 (375)
                       .+ .....+.++|++..                         .++++..+..+.+||+.++.........         
T Consensus       181 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  249 (346)
T d1jmxb_         181 -LR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD---------  249 (346)
T ss_dssp             -ST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE---------
T ss_pred             -cC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec---------
Confidence             32 23334444444432                         2333444556777888777655544333         


Q ss_pred             cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG  277 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~  277 (375)
                         +...+..+.+++      ++..++.... +.|.+||..+++                                    
T Consensus       250 ---~~~~~~~~~~~~------~~~~~~~~~~-~~v~v~d~~~~~------------------------------------  283 (346)
T d1jmxb_         250 ---LTELYFTGLRSP------KDPNQIYGVL-NRLAKYDLKQRK------------------------------------  283 (346)
T ss_dssp             ---CSSCEEEEEECS------SCTTEEEEEE-SEEEEEETTTTE------------------------------------
T ss_pred             ---ccceeEEEEEeC------CCCEEEEecC-CeEEEEECCCCc------------------------------------
Confidence               356677888887      5666666554 579999998752                                    


Q ss_pred             ceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194          278 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~  327 (375)
                          .+..+. +...+.+++|+   |||++|++++.|+.|++||.++.+.
T Consensus       284 ----~~~~~~-~~~~~~~va~s---~DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         284 ----LIKAAN-LDHTYYCVAFD---KKGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             ----EEEEEE-CSSCCCEEEEC---SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             ----EEEEEc-CCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECccCCE
Confidence                222222 23468899999   9999999999999999999999843

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=2.2e-18  Score=144.27  Aligned_cols=285  Identities=10%  Similarity=0.053  Sum_probs=184.2

Q ss_pred             cCCCCCeeeecCCCceeEEEEecCCCCEEEEeC----------CCCcEEEEecccCceeeEeeecCccE-------EEEE
Q 017194            3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGNGPV-------TSLC   65 (375)
Q Consensus         3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~v-------~~l~   65 (375)
                      ++++.+.++.++..+  .++|+|| |++|++++          .++.|.+||..+++.+..+..+....       ..+.
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~SpD-G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~  131 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA  131 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcCC-CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEE
Confidence            466677777766554  6899999 88888764          45789999999999988877665443       4578


Q ss_pred             EeCCCCeEEEEc--CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeE-EEEeCCCcEEEEeCcCceeeeeEe
Q 017194           66 FKSGNEDIIYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLR  142 (375)
Q Consensus        66 ~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~  142 (375)
                      |+++++.++...  .++.+.+|+....+.   ...    .....++.++|+++.+ ++.+.|+.+.+|+...++......
T Consensus       132 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         132 NTPNNADLLFFQFAAGPAVGLVVQGGSSD---DQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             EEeCCCcEEEEEEcCCCceEEeeccCCeE---EEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            888888766554  356788888775432   121    2345678899998764 677899999999998887766554


Q ss_pred             cCc------ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc--
Q 017194          143 AGH------SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD--  214 (375)
Q Consensus       143 ~~~------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  214 (375)
                       .+      ......+.+.+++  .++..+.++.+.+|+...+............ .........+.....+++++..  
T Consensus       205 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~  280 (373)
T d2madh_         205 -GAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALS-GGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             -eeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeecccc-CcEEeeeeccCcceeeEEecCCCe
Confidence             22      1223344455554  4677778999999998876543333221000 0000000112223334444410  


Q ss_pred             --cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCcc
Q 017194          215 --MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA  292 (375)
Q Consensus       215 --~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
                        ....++..++....++.+.+||..+++.                                        +..+ .+...
T Consensus       281 ~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~----------------------------------------~~~~-~~~~~  319 (373)
T d2madh_         281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQT----------------------------------------SSQI-SLGHD  319 (373)
T ss_pred             EEEecCCCceEEeecCCCeEEEEECCCCcE----------------------------------------EEEe-cCCCC
Confidence              0011344455566677888888877532                                        2222 34567


Q ss_pred             EEEEEEeecCCCCc--EEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC
Q 017194          293 ASCVAFSMFGERGK--YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP  354 (375)
Q Consensus       293 v~~~~~s~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  354 (375)
                      +..++|+   |||+  ++++++.|+.|++||+.++         +.+..+..+......+++.+
T Consensus       320 ~~~~a~s---pDG~~~l~vt~~~d~~v~v~D~~tg---------~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         320 VDAISVA---QDGGPDLYALSAGTEVLHIYDAGAG---------DQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             eeEEEEC---CCCCEEEEEEeCCCCeEEEEECCCC---------CEEEEECCCCCCCcEEEEec
Confidence            8899999   9998  4568899999999999999         56666666767677776643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.4e-18  Score=143.02  Aligned_cols=258  Identities=11%  Similarity=0.146  Sum_probs=171.4

Q ss_pred             cCCCceeEEEEecCCCCEE-EEeCCCCcEEEEecccCceeeEee---ecCccEEEEEEeCCCCeEEEEcC-CCeEEEEEC
Q 017194           13 GHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTD---VGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDV   87 (375)
Q Consensus        13 ~h~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd~   87 (375)
                      .|.+.+..++|+|| |++| +++..|+.|++|++........+.   .+...+..++|+|+|++|++++. ++.+.+|+.
T Consensus        34 ~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          34 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            68899999999999 7877 555668999999998765433332   24556788999999999998875 668999988


Q ss_pred             CCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeee-----EecCcccceeEEEEeeCCCcE
Q 017194           88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKS-----LRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ......... ....+...+.++.++|++++++.++ .+..+.+|+.........     ...........++|++++...
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         113 EDGLPVGVV-DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             ETTEEEEEE-EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             ccccceecc-cccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            754433322 2334466788999999999888776 455799999875432221     111334566889999999855


Q ss_pred             EEEeecCCeEEEeeCCCCCcce----EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEe
Q 017194          162 VISGGLDSKLVMWDFSKGRPNK----IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVIN  236 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d  236 (375)
                      +.+....+...+|+........    ..... +.      ..........+++++      +++++++. ..++.+.+|+
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~s~------d~~~~~~~~~~~~~~~~~~  258 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMM-PE------NFSDTRWAADIHITP------DGRHLYACDRTASLITVFS  258 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECS-CT------TCCSCCCEEEEEECT------TSSEEEEEETTTTEEEEEE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeee-ec------CCCccccceeEEEec------ccCceeeecccCCeEEEEE
Confidence            5566677788888875433221    11111 00      001224456778888      67766554 5678899998


Q ss_pred             CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCC
Q 017194          237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDK  315 (375)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg  315 (375)
                      +......                                     ............+..++|+   |||++|++++ .++
T Consensus       259 ~~~~~~~-------------------------------------~~~~~~~~~~~~p~~~a~s---pDGk~l~va~~~~~  298 (333)
T d1ri6a_         259 VSEDGSV-------------------------------------LSKEGFQPTETQPRGFNVD---HSGKYLIAAGQKSH  298 (333)
T ss_dssp             ECTTSCC-------------------------------------EEEEEEEECSSSCCCEEEC---TTSSEEEEECTTTC
T ss_pred             EcCCCCE-------------------------------------EEEEEEeCCCCCeeEEEEe---CCCCEEEEEECCCC
Confidence            8753211                                     1111222234556788999   9999877665 568


Q ss_pred             eEEEEeC--CCc
Q 017194          316 LVKVWDC--SRF  325 (375)
Q Consensus       316 ~i~iwd~--~~~  325 (375)
                      .|++|++  +++
T Consensus       299 ~v~v~~id~~tG  310 (333)
T d1ri6a_         299 HISVYEIVGEQG  310 (333)
T ss_dssp             EEEEEEEETTTT
T ss_pred             eEEEEEEECCCC
Confidence            9999955  454

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=6.4e-19  Score=146.58  Aligned_cols=279  Identities=11%  Similarity=0.057  Sum_probs=171.4

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEe----------CCCCcEEEEecccCceeeEeeecC-------ccEEEEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASS----------GEDGCICWFDLRSKDVQLVTDVGN-------GPVTSLCF   66 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~----------~~d~~i~iw~~~~~~~~~~~~~~~-------~~v~~l~~   66 (375)
                      +++.+.++..+..+  .++|+|| +++|+++          ..|+.|++||..+++.+..+..+.       .....++|
T Consensus        37 tg~~~~~~~~g~~~--~~a~SpD-g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d2bbkh_          37 AGRVIGMIDGGFLP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  113 (355)
T ss_dssp             TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCcEEEEEECCCCC--ceEEcCC-CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence            55566666655444  6899999 7777654          347899999999999888776543       23356899


Q ss_pred             eCCCCeEEEEc--CCCeEEEEECCCCCcccccccccC----CCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeee
Q 017194           67 KSGNEDIIYVS--SGKEVKSFDVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYK  139 (375)
Q Consensus        67 ~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~  139 (375)
                      +|++++++.+.  .+..+.+|+..+++....+.....    .......+.++++++.++... .++.+.+++......  
T Consensus       114 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~--  191 (355)
T d2bbkh_         114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP--  191 (355)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC--
T ss_pred             ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc--
Confidence            99999887765  456899999987655444332110    011223455666665554432 334444444433222  


Q ss_pred             eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC
Q 017194          140 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT  219 (375)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  219 (375)
                          .+...+....+.+++. .++.++.++.+++|++..++....-.... ...........+.....+++++      +
T Consensus       192 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~------d  259 (355)
T d2bbkh_         192 ----EDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEA-LTEAERADGWRPGGWQQVAYHR------A  259 (355)
T ss_dssp             ----TTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEES-SCHHHHHTTEEECSSSCEEEET------T
T ss_pred             ----eecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCC-cccceEeeeeeccceEEEEEeC------C
Confidence                3344455667777777 68888999999999998765422111000 0000000001122334577777      6


Q ss_pred             CCEEEEEecC----------CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194          220 NKICVVAKGD----------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH  289 (375)
Q Consensus       220 ~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
                      +..+++...+          +.|.+||..+++..                                        ..+. +
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~----------------------------------------~~~~-~  298 (355)
T d2bbkh_         260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL----------------------------------------AKFE-M  298 (355)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----------------------------------------EEEE-E
T ss_pred             CCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE----------------------------------------EEec-C
Confidence            7777766543          36888998875322                                        1222 2


Q ss_pred             CccEEEEEEeecCCCCc--EEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeee
Q 017194          290 TAAASCVAFSMFGERGK--YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT  352 (375)
Q Consensus       290 ~~~v~~~~~s~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  352 (375)
                      ...+.+++|+   |||+  ++++++.|+.|++||++++         +.+..+.++......+.+
T Consensus       299 ~~~~~~~a~s---pDG~~~l~v~~~~d~~i~v~D~~tg---------~~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         299 GHEIDSINVS---QDEKPLLYALSTGDKTLYIHDAESG---------EELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             EEEECEEEEC---CSSSCEEEEEETTTTEEEEEETTTC---------CEEEEECCCCSSCCEEEC
T ss_pred             CCCEEEEEEc---CCCCeEEEEEECCCCEEEEEECCCC---------CEEEEEeCcCCCccEEEe
Confidence            3457889999   9997  4567888999999999998         555555555444444433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=4.6e-17  Score=135.90  Aligned_cols=297  Identities=8%  Similarity=-0.103  Sum_probs=180.1

Q ss_pred             CCCceeEEEEecCCCCE---EEEeCCCCc--EEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc----------C
Q 017194           14 HKATATCCIASRDRPGF---VASSGEDGC--ICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------S   78 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~---l~s~~~d~~--i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~----------~   78 (375)
                      +.++...++..++ ++.   .+....++.  |.+||..+++.+..+..+..+  .++|+|||+.|++++          .
T Consensus        18 ~~g~~~~~a~~~~-~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          18 SDGSSCDHGPGAI-SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCBCCCCCCC-TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             cCCCccccccCCC-CcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            4455555667777 553   223444454  667799999998888877655  589999999988764          3


Q ss_pred             CCeEEEEECCCCCcccccccccC----CCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194           79 GKEVKSFDVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ  153 (375)
Q Consensus        79 d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  153 (375)
                      |+.|.+||..+++....+.....    .......++|+|||++|+++. .++.+.+||+.+++....+. .+....    
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-~~~~~~----  169 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-SASCFH----  169 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-CSSCCC----
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee-ccCcce----
Confidence            57899999998765544432110    112345689999999998876 57999999999999988887 444332    


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      +.|.++..++..+.||.+.++++..............       ...+...+....+.+      ++..+..  ..+.++
T Consensus       170 ~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~g~~~~~--~~~~v~  234 (368)
T d1mdah_         170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC-------TGAQNCSSQAAQANY------PGMLVWA--VASSIL  234 (368)
T ss_dssp             CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS-------CTTSCBCSCCEEETT------TTEEEEC--BSSCCE
T ss_pred             EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc-------ccccccceeeccccc------CcEEEEe--cCCCEE
Confidence            2333443678888899999999876654443321100       000122334455554      4544443  345677


Q ss_pred             EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194          234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN  313 (375)
Q Consensus       234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~  313 (375)
                      +++................                        .....  ....  ......++++   +++..++....
T Consensus       235 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~--~~~~--~~g~~~~a~~---~~~~~~~v~~~  283 (368)
T d1mdah_         235 QGDIPAAGATMKAAIDGNE------------------------SGRKA--DNFR--SAGFQMVAKL---KNTDGIMILTV  283 (368)
T ss_dssp             EEECCSSCCEEECCCCSSC------------------------THHHH--TTEE--ECSSSCEEEE---TTTTEEEEEEE
T ss_pred             EEeecCCceEEEeeccccc------------------------ceeee--eeec--CCCceeEEEc---CCCCEEEEEec
Confidence            7776654322211100000                        00000  0000  1112235667   67666554322


Q ss_pred             ---------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCc--EEEeeCCCeEEEEecC
Q 017194          314 ---------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN--LVVCDTSKVVKVYSIS  375 (375)
Q Consensus       314 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~s~~~dg~v~iw~~~  375 (375)
                               ...|.+||..+++         .+..+ .+...+..++|+| ||+.  ++++..|+.|++||.+
T Consensus       284 ~~~~~~~~~~~~v~v~D~~t~~---------~~~~~-~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         284 EHSRSCLAAAENTSSVTASVGQ---------TSGPI-SNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSCC---------EEECC-EEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred             CCCceeecCCceEEEEECCCCc---------EeEEe-cCCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence                     2469999999984         33222 3456788999999 8874  4566789999999963

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.75  E-value=7.1e-17  Score=133.88  Aligned_cols=277  Identities=12%  Similarity=0.017  Sum_probs=175.0

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeee------------------------------cCccEEEEEEeCCCCeEEEE-cCC
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDV------------------------------GNGPVTSLCFKSGNEDIIYV-SSG   79 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~------------------------------~~~~v~~l~~~~~~~~l~~~-~~d   79 (375)
                      ++|++.+|.|++|++.+++.++++..                              |.........+|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            77889999999999999988777532                              12223444557899988665 457


Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCe--EEEEeCCC-----------------cEEEEeCcCceeeee
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF--LACADDGG-----------------DVKIIDIRQHCLYKS  140 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg-----------------~i~iwd~~~~~~~~~  140 (375)
                      ++|.++|+++.+..+.+..-  +...+..++|+|+++.  ++..+.+.                 .+..+|..+.+...+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP--~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIP--NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECT--TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CEEEEEECCCCcEeeEEecC--CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            89999999987655443321  2467889999999984  44444332                 235578877777777


Q ss_pred             EecCcccceeEEEEeeCCCcEEEEeecC----------------------------------------CeEEEeeCCCCC
Q 017194          141 LRAGHSSICSSVQFIPWKPWEVISGGLD----------------------------------------SKLVMWDFSKGR  180 (375)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------------------------------~~i~~wd~~~~~  180 (375)
                      +.  -......+.++|+|++.++++...                                        +.+.+++....+
T Consensus       172 I~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         172 VI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             Ee--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            66  234678899999999544444332                                        223333333333


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE-EecCCcEEEEeCCCcceeecccccCCCCCCceee
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSKSTTKPLKGSQST  259 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  259 (375)
                      .+..+..              ....+.+.++|      ||+++++ +..+++|.+||+.+.........   ....++. 
T Consensus       250 v~~~IPv--------------gksPhGv~vSP------DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~---~~~~~~~-  305 (441)
T d1qnia2         250 FTRYIPV--------------PKNPHGLNTSP------DGKYFIANGKLSPTVSVIAIDKLDDLFEDKI---ELRDTIV-  305 (441)
T ss_dssp             SEEEECC--------------BSSCCCEEECT------TSCEEEEECTTSSBEEEEEGGGHHHHTTTSS---CGGGGEE-
T ss_pred             eEEEEeC--------------CCCccCceECC------CCCEEEEeCCcCCcEEEEEeehhhhHhhccC---CcceEEE-
Confidence            3334432              24467789988      8998765 56789999999986432211110   0000000 


Q ss_pred             cccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec-chhhhh-
Q 017194          260 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS-INNDLL-  337 (375)
Q Consensus       260 s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-  337 (375)
                                              ... ...-.....+|+   ++|..+.+..-|..|..|++......... ...+++ 
T Consensus       306 ------------------------~~~-~~glgplh~~fd---~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~  357 (441)
T d1qnia2         306 ------------------------AEP-ELGLGPLHTTFD---GRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQ  357 (441)
T ss_dssp             ------------------------ECC-BCCSCEEEEEEC---SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEE
T ss_pred             ------------------------eec-ccccCcccceec---CCceEEEcccccceEEEeccchhhhhhccCCCceeEe
Confidence                                    011 111233455788   89988999999999999998532100000 000111 


Q ss_pred             ----hhhcccccceeeeeecCCCCCcEEEee
Q 017194          338 ----IKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       338 ----~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                          ....+|...+.+.+++| ||+||++++
T Consensus       358 ~~~v~y~~GH~~~~~~~t~~p-dGk~l~s~~  387 (441)
T d1qnia2         358 KLDVQYQPGHNHASLTESRDA-DGKWLVVLS  387 (441)
T ss_dssp             EEECSSCEEEEEETTTTSTTC-CCCEEEEEE
T ss_pred             ccccccCCCCCccccccccCC-CCcEEEecC
Confidence                12368999999999999 999999993

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.73  E-value=1.1e-15  Score=131.68  Aligned_cols=305  Identities=12%  Similarity=0.026  Sum_probs=168.5

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeC---------CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSG---------EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK   80 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~   80 (375)
                      +|..|...|.++.|+|| +++|+.++         .++.+.|||+.+++ ...+..+...+..+.|+|||+.+|... ++
T Consensus        56 ~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~  132 (470)
T d2bgra1          56 TFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NN  132 (470)
T ss_dssp             TTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred             hhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEee-cc
Confidence            44556788999999999 89988774         35678999999887 456777889999999999999999865 78


Q ss_pred             eEEEEECCCCCccccccccc------C---------CCcceeEEEEcCCCCeEEEEeCCCc-EEEEe-------------
Q 017194           81 EVKSFDVHMPASWRPLESYN------Y---------NKEEINQIVCNPKSSFLACADDGGD-VKIID-------------  131 (375)
Q Consensus        81 ~i~iwd~~~~~~~~~~~~~~------~---------~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd-------------  131 (375)
                      .+++|+..+++..+......      +         ..+....+.|+|||++|+....|.. +..|+             
T Consensus       133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~  212 (470)
T d2bgra1         133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK  212 (470)
T ss_dssp             EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred             cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCe
Confidence            99999998775443322110      0         1233466889999999998764432 33332             


Q ss_pred             ----------------------CcCceeeeeEe----------cCcccceeEEEEeeCCCcEEEEe-ecCC---eEEE--
Q 017194          132 ----------------------IRQHCLYKSLR----------AGHSSICSSVQFIPWKPWEVISG-GLDS---KLVM--  173 (375)
Q Consensus       132 ----------------------~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~-~~d~---~i~~--  173 (375)
                                            +..++......          ......+..+.|.+++. +++.. ...+   .+.+  
T Consensus       213 ~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~r~~~~~~~~~~~  291 (470)
T d2bgra1         213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICD  291 (470)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEE
T ss_pred             eeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCc-eeEEEeeccCCceEEEEEE
Confidence                                  22111110000          01122456788888876 33332 2222   2333  


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE--eCCCcceeecccccCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI--NIESELNISRSKSTTK  251 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~  251 (375)
                      +|..++.....................+........+.+      ++.+++.+..+|..++|  +..........  ...
T Consensus       292 ~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt--~g~  363 (470)
T d2bgra1         292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG------NSFYKIISNEEGYRHICYFQIDKKDCTFIT--KGT  363 (470)
T ss_dssp             EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS------SEEEEEEECTTSCEEEEEEETTCSCCEESC--CSS
T ss_pred             ecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecC------CCcEEEEeccCcCceeEEEeccCCceeeec--cCC
Confidence            444444322211100000000000000111111222222      44456677777766555  54443332222  112


Q ss_pred             CCCCceeecccccceeeeee-------------eecCCcceeEee-eeecCCCccEEEEEEeecCCCCcEEE---EecCC
Q 017194          252 PLKGSQSTSKVNIRDAEMEI-------------LDQSGGKRLHLD-YSVGGHTAAASCVAFSMFGERGKYLI---SGGND  314 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~l~---s~~~d  314 (375)
                      ..+..+ ++++++.+.+...             .........+++ ..+..|...+..++||   |||++++   ++...
T Consensus       364 ~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fS---pdgky~~~~~s~~~~  439 (470)
T d2bgra1         364 WEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFS---KEAKYYQLRCSGPGL  439 (470)
T ss_dssp             SCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEEC---TTSSEEEEEECSBSS
T ss_pred             eeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEEC---CCCCEEEEEecCCCC
Confidence            222222 3444554433211             122222333333 2455788889999999   9999977   44445


Q ss_pred             CeEEEEeCCCceeeee
Q 017194          315 KLVKVWDCSRFQGVQT  330 (375)
Q Consensus       315 g~i~iwd~~~~~~~~~  330 (375)
                      -.+.+|+..+++.+..
T Consensus       440 P~~~l~~~~~g~~v~~  455 (470)
T d2bgra1         440 PLYTLHSSVNDKGLRV  455 (470)
T ss_dssp             CEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCCEEEE
Confidence            5689999999876543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.70  E-value=1.2e-14  Score=125.24  Aligned_cols=147  Identities=10%  Similarity=0.066  Sum_probs=107.7

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-----cCccEEEEEEeCCCCeEEEEcC---------CCeEEEE
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-----GNGPVTSLCFKSGNEDIIYVSS---------GKEVKSF   85 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~~~~---------d~~i~iw   85 (375)
                      .+.|.++ ++++..  .++.+.+||+.+++....+..     |...|.++.|+|||++|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d-~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISD-HEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSS-SEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCC-CEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            4789998 777764  367899999999987665543     4578999999999999998753         4678999


Q ss_pred             ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC-----------------cccc
Q 017194           86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-----------------HSSI  148 (375)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~  148 (375)
                      |+.+++.    ..+..+...+..+.|+|||+.||.. .++.+++|+..+++..+....+                 ..+.
T Consensus        98 d~~~~~~----~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          98 DLNKRQL----ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             ETTTTEE----CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             ECCCCcc----cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            9997542    3344457889999999999999986 5678999999888665433201                 1223


Q ss_pred             eeEEEEeeCCCcEEEEeecC-CeEEEee
Q 017194          149 CSSVQFIPWKPWEVISGGLD-SKLVMWD  175 (375)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~d-~~i~~wd  175 (375)
                      ...+.|+|||+ .|+....| ..+..|+
T Consensus       173 ~~~~~wSPDGk-~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         173 YSALWWSPNGT-FLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SBCEEECTTSS-EEEEEEEECTTCCEEE
T ss_pred             ccccEECCCCC-ccceeEecCCcCceEE
Confidence            46688999999 57666544 3344443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.66  E-value=6.9e-16  Score=127.91  Aligned_cols=274  Identities=10%  Similarity=-0.030  Sum_probs=166.9

Q ss_pred             EEEEcCCCeEEEEECCCCCccccccccc---------------------------CCCcceeEEEEcCCCCeEEEEe-CC
Q 017194           73 IIYVSSGKEVKSFDVHMPASWRPLESYN---------------------------YNKEEINQIVCNPKSSFLACAD-DG  124 (375)
Q Consensus        73 l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~l~~~~-~d  124 (375)
                      +++++.+|+|++|++.+++.++.+..+.                           .|.........+|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5566678888888887766554443321                           1223344555678999987665 67


Q ss_pred             CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE------------------EEeeCCCCCcceEEe
Q 017194          125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL------------------VMWDFSKGRPNKIVN  186 (375)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i------------------~~wd~~~~~~~~~~~  186 (375)
                      ..|.++|+++++....+...+...+..++|+|+++..++.+..+..+                  ..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            88999999999887776534667889999999998544544433333                  458888887777776


Q ss_pred             cCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-cEEEEeCCCcceeecccccCCCCCCceeecccccc
Q 017194          187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR  265 (375)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  265 (375)
                      .+              .....++++|      +|+++++++.+. .+..++..+........  .........++|+|++
T Consensus       174 v~--------------~~p~~v~~sp------dGk~a~vt~~nse~~~~id~~t~~~~d~i~--v~n~p~~~~~~~dGk~  231 (441)
T d1qnia2         174 VD--------------GNLDNTDADY------TGKYATSTCYNSERAVDLAGTMRNDRDWVV--VFNVERIAAAVKAGNF  231 (441)
T ss_dssp             ES--------------SCCCCEEECS------SSSEEEEEESCTTCCSSHHHHTCSSBCEEE--EEEHHHHHHHHHTTCC
T ss_pred             cC--------------CCccceEECC------CCCEEEEEecCCCceEEEeccCcceEEEEE--eCCccceEEEecCCCE
Confidence            54              5678899999      899999888653 23222322221111110  0011233457788887


Q ss_pred             eeeee--eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE-EecCCCeEEEEeCCCceeeeecchhhhhhhhcc
Q 017194          266 DAEME--ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN  342 (375)
Q Consensus       266 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  342 (375)
                      +...+  ............+..+..... ...+.++   |||++++ ++..+++|.|||+.+......... .......+
T Consensus       232 ~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vS---PDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~-~~~~~~~~  306 (441)
T d1qnia2         232 KTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTS---PDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI-ELRDTIVA  306 (441)
T ss_dssp             BCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEEC---TTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS-CGGGGEEE
T ss_pred             EEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceEC---CCCCEEEEeCCcCCcEEEEEeehhhhHhhccC-CcceEEEe
Confidence            65421  111111111223334444333 4678999   9999875 567799999999987531100000 00011111


Q ss_pred             ccc---ceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          343 LNK---KVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       343 ~~~---~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      +..   .....+|.+ +|..+.+...|..|..|++
T Consensus       307 ~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         307 EPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             CCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEH
T ss_pred             ecccccCcccceecC-CceEEEcccccceEEEecc
Confidence            111   123357888 8888888889999999986

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=2.6e-15  Score=125.13  Aligned_cols=261  Identities=8%  Similarity=-0.001  Sum_probs=156.1

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEe----------CCCCcEEEEecccCceeeEeeecCc-------cEEEEEE
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASS----------GEDGCICWFDLRSKDVQLVTDVGNG-------PVTSLCF   66 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~----------~~d~~i~iw~~~~~~~~~~~~~~~~-------~v~~l~~   66 (375)
                      +++.+.++.++..+  .++|+|| ++.|+++          ..|+.|.+||..+++.+..+..+..       ....++|
T Consensus        55 ~~~~~~~~~~~~~~--~~a~spD-g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~  131 (368)
T d1mdah_          55 CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCcEEEEEeCCCCC--cceECCC-CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence            44445556655544  5899999 7877764          3477899999999999888765432       2346899


Q ss_pred             eCCCCeEEEEc-CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe---
Q 017194           67 KSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR---  142 (375)
Q Consensus        67 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  142 (375)
                      +|||++|+++. .++.+.+||+.+++....+..   +.....   +......++..+.||.+.++++..........   
T Consensus       132 SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKS---ASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC---SSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec---cCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence            99999998776 468999999998655444322   111111   11123355556677777777765443322111   


Q ss_pred             --cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194          143 --AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN  220 (375)
Q Consensus       143 --~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  220 (375)
                        ..+...+....+.+++. .+.+  ..+.+.++++..+............ .........+.....++++|      ++
T Consensus       206 ~~~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~a~~~------~~  275 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAAGATMKAAIDGNE-SGRKADNFRSAGFQMVAKLK------NT  275 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSSCCEEECCCCSSC-THHHHTTEEECSSSCEEEET------TT
T ss_pred             cccccccceeecccccCcE-EEEe--cCCCEEEEeecCCceEEEeeccccc-ceeeeeeecCCCceeEEEcC------CC
Confidence              03344555667777764 3333  3456777777655443322111000 00000001122234567777      56


Q ss_pred             CEEEEEecC---------CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc
Q 017194          221 KICVVAKGD---------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA  291 (375)
Q Consensus       221 ~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (375)
                      ..+++...+         ..|.+||..+++..                                        ..+. +..
T Consensus       276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----------------------------------------~~~~-~~~  314 (368)
T d1mdah_         276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----------------------------------------GPIS-NGH  314 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----------------------------------------ECCE-EEE
T ss_pred             CEEEEEecCCCceeecCCceEEEEECCCCcEe----------------------------------------EEec-CCC
Confidence            666655432         25888998875322                                        1222 235


Q ss_pred             cEEEEEEeecCCCCc--EEEEecCCCeEEEEeCCCcee
Q 017194          292 AASCVAFSMFGERGK--YLISGGNDKLVKVWDCSRFQG  327 (375)
Q Consensus       292 ~v~~~~~s~~~~~~~--~l~s~~~dg~i~iwd~~~~~~  327 (375)
                      .+..++|+   |||+  +++++..|+.|++||..+++.
T Consensus       315 ~~~~~a~s---pDG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         315 DSDAIIAA---QDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EECEEEEC---CSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             ceeEEEEC---CCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            67889999   8987  356778899999999999854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.47  E-value=6e-11  Score=95.22  Aligned_cols=200  Identities=12%  Similarity=0.042  Sum_probs=138.1

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc-ccc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRP   95 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~   95 (375)
                      .+..+++.|| |+++++...+++|..|+.. ++ ...+......+.+++|.++|+.+++...++.+..|+...... ...
T Consensus        29 ~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPD-GTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTT-SCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCC-CCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence            5788999999 8999999999999888855 33 344455677899999999999888888888888888654321 111


Q ss_pred             cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec---------CcccceeEEEEeeCCCcEEEEee
Q 017194           96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---------GHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      +... ........+.+.++++++++.+.++.+..+|...+........         ........+.+..  ..++++.+
T Consensus       106 ~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~  182 (302)
T d2p4oa1         106 LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNT  182 (302)
T ss_dssp             EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEET
T ss_pred             cccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecC
Confidence            2111 1245678899999998888888889999999876644322220         1112345565553  44777888


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      ..+.|..++.............           ........+++.+      +|+++++...++.|..++...
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~pdgia~d~------dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIF-----------VEQTNIDDFAFDV------EGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEE-----------EESCCCSSEEEBT------TCCEEEECBTTCCEEEECTTC
T ss_pred             CCCeEEeccccccccccccccc-----------cCCCCCcceEECC------CCCEEEEEcCCCcEEEECCCC
Confidence            8899999988765433221110           0123456788887      798888877888999987764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=6e-11  Score=93.00  Aligned_cols=246  Identities=8%  Similarity=0.007  Sum_probs=152.5

Q ss_pred             eeecCCC--ceeEEEEecCCCCEEEE-eCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           10 RLRGHKA--TATCCIASRDRPGFVAS-SGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        10 ~l~~h~~--~i~~~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      .+.+++.  .-..+++.++ +++.++ .+..+.+..++............-......+++.++++.+++....+.+++++
T Consensus         6 ~~~~~~~~~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_           6 PFTGIDFRLSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             CCCSCCSCCCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred             ecccCCCcCCCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeee
Confidence            3444443  3478999998 675554 55667777777654433222222223457889999998777766666666665


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      -.+.........    ......+++.++++++++-..+..+..++........... .-.....++++.+++. ++++..
T Consensus        85 ~~~~~~~~~~~~----~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-~~v~~~  158 (260)
T d1rwia_          85 GSNNQTVLPFDG----LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGN-VYVTDT  158 (260)
T ss_dssp             TCSCCEECCCCS----CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCC-EEEEEG
T ss_pred             eccceeeeeeee----eeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCC-Eeeecc
Confidence            444332222211    2456889999999887776666777777765433222111 2234567899999987 788888


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS  246 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  246 (375)
                      .++.|..+|...... ..+...            .......|++.+      +++++++-...+.|..++.......   
T Consensus       159 ~~~~i~~~d~~~~~~-~~~~~~------------~~~~p~gi~~d~------~g~l~vsd~~~~~i~~~~~~~~~~~---  216 (260)
T d1rwia_         159 DNNRVVKLEAESNNQ-VVLPFT------------DITAPWGIAVDE------AGTVYVTEHNTNQVVKLLAGSTTST---  216 (260)
T ss_dssp             GGTEEEEECTTTCCE-EECCCS------------SCCSEEEEEECT------TCCEEEEETTTTEEEEECTTCSCCE---
T ss_pred             cccccccccccccee-eeeecc------------ccCCCccceeee------eeeeeeeecCCCEEEEEeCCCCeEE---
Confidence            888999999775432 222211            124567899987      7888877777888888876542110   


Q ss_pred             cccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                                                         .  .....-.....|+++   ++|.++++-..++.|+.++...
T Consensus       217 -----------------------------------~--~~~~~~~~P~~i~~d---~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         217 -----------------------------------V--LPFTGLNTPLAVAVD---SDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             -----------------------------------E--CCCCSCCCEEEEEEC---TTCCEEEEEGGGTEEEEECCCG
T ss_pred             -----------------------------------E--EccCCCCCeEEEEEe---CCCCEEEEECCCCEEEEEeCCC
Confidence                                               0  001112346789999   8998888877777777665443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.45  E-value=2.1e-10  Score=94.45  Aligned_cols=273  Identities=12%  Similarity=0.067  Sum_probs=148.9

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe---CCCcEEEEeCcC
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIRQ  134 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~  134 (375)
                      ...+.-|+|+|++++|.++. .+.+..|.+.............. ......+.++++++.++...   ..+.|..+.+..
T Consensus        39 ~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~-~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPI-GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEEC-CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecC-CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            45567799999999888776 46677777664322222211111 23456778888887543322   245555544321


Q ss_pred             c-ee---------------eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe-cCCCCCCCCCC
Q 017194          135 H-CL---------------YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNAG  197 (375)
Q Consensus       135 ~-~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~  197 (375)
                      . ..               ...........+.++.|+|+|++++++......|.+|+......+.... ...+       
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-------  189 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-------  189 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-------
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-------
Confidence            1 00               0111101223467899999999545554456689998866433322221 0000       


Q ss_pred             cccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194          198 QCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                        ........++|+|      +++++++.. .++.|.+|++............                     ......
T Consensus       190 --~~g~gPr~i~f~p------dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~---------------------~~~~~~  240 (365)
T d1jofa_         190 --DPGDHPRWVAMHP------TGNYLYALMEAGNRICEYVIDPATHMPVYTHH---------------------SFPLIP  240 (365)
T ss_dssp             --STTCCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE---------------------EEESSC
T ss_pred             --CCCCceEEEEECC------CCceEEEeccCCCEEEEEEecCCCceEEEEee---------------------eecccc
Confidence              0134678999999      788876655 5789999998754321110000                     000000


Q ss_pred             cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeee
Q 017194          277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL  350 (375)
Q Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  350 (375)
                      ............+......+.++   |||++|+++..      .+.|..|++.........   ..+............+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~s---pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~---~~~~~~~~~G~~p~~i  314 (365)
T d1jofa_         241 PGIPDRDPETGKGLYRADVCALT---FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ---LFLSPTPTSGGHSNAV  314 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEEC---TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE---EEEEECSSCCTTCCCE
T ss_pred             ccccccccccccccCCccceEEC---CCCCEEEEEcccCCCccceEEEEEEecCCCceeeE---eEeeEEEcCCCCccEE
Confidence            00000000111233456678899   99999887642      234777777653211000   0111112233456778


Q ss_pred             eecCCCCCcEEEe-eCCCeEEEEec
Q 017194          351 CTTPTESENLVVC-DTSKVVKVYSI  374 (375)
Q Consensus       351 ~~~~~~~~~l~s~-~~dg~v~iw~~  374 (375)
                      +++|.+|++|+++ ..++.|.+|++
T Consensus       315 ~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         315 SPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EecCCCCCEEEEEeCCCCeEEEEEE
Confidence            8988678887776 47799999975

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5e-10  Score=95.06  Aligned_cols=322  Identities=9%  Similarity=0.067  Sum_probs=180.4

Q ss_pred             EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec---CccEEEEEEeCCCCeEEEEc---------CCCeEEEEECC
Q 017194           21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFKSGNEDIIYVS---------SGKEVKSFDVH   88 (375)
Q Consensus        21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~~~~---------~d~~i~iwd~~   88 (375)
                      ..|.++ +.++. -..+|.|.+||+.+++....+...   ...+....|+||+++++...         ..+.+.++|+.
T Consensus        22 ~~W~~~-~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISD-TEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSS-SCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCC-CcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            468887 56554 456789999999988765444432   34677888999999988764         34688999999


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc-----------------eeE
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-----------------CSS  151 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------v~~  151 (375)
                      ++.. ..+.........+....|+|||+.||... ++.|.+.+..++..++....+....                 -.+
T Consensus       100 ~~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             CCce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence            7653 33333333345677789999999998875 5779998887765554433121111                 247


Q ss_pred             EEEeeCCCcEEEEe-ecCCeEEEeeCCC--C---CcceEEecCCCCCC------------CCC---------CcccCCCc
Q 017194          152 VQFIPWKPWEVISG-GLDSKLVMWDFSK--G---RPNKIVNFGLPENN------------GNA---------GQCYNPAF  204 (375)
Q Consensus       152 ~~~~~~~~~~l~~~-~~d~~i~~wd~~~--~---~~~~~~~~~~~~~~------------~~~---------~~~~~~~~  204 (375)
                      +.|+|||++ |+.. ..+..|..+.+..  +   .....+..+.+...            ...         ........
T Consensus       178 ~~WSPDgk~-iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         178 HWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             EEECCCCCe-EEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            789999995 5544 3455555554321  0   11222222111100            000         00011223


Q ss_pred             eeEEeecCCccccCCCCEEEEEec-C---CcEEEEeCCCcceeecccccCCC----CCCceeecccccceeeeeeeecCC
Q 017194          205 VHAIAIPDADMLDKTNKICVVAKG-D---GVVDVINIESELNISRSKSTTKP----LKGSQSTSKVNIRDAEMEILDQSG  276 (375)
Q Consensus       205 v~~~~~~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~~~~~~~~~~  276 (375)
                      +..+.|+|      ++++++.... +   ..|.++|..++............    ......+++||+.++.........
T Consensus       257 ~~~~~W~~------d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g  330 (465)
T d1xfda1         257 ITMVKWAT------STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG  330 (465)
T ss_dssp             EEEEEESS------SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred             eeeeEEcC------CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecc
Confidence            56778877      6766555432 1   26888999888665543322221    234568999999776533222111


Q ss_pred             ccee--------------EeeeeecCCCccEEEE-EEeecCCCCcEEE-EecCCC----eEEEEeCCCceeeeecchhhh
Q 017194          277 GKRL--------------HLDYSVGGHTAAASCV-AFSMFGERGKYLI-SGGNDK----LVKVWDCSRFQGVQTSINNDL  336 (375)
Q Consensus       277 ~~~~--------------~~~~~~~~~~~~v~~~-~~s~~~~~~~~l~-s~~~dg----~i~iwd~~~~~~~~~~~~~~~  336 (375)
                      ...+              .....+....-.|..+ .|+   ++++.|. ++..++    .|+--++......      ++
T Consensus       331 ~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d---~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~------~~  401 (465)
T d1xfda1         331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD---EKGNKIYFLSTEDLPRRRQLYSANTVGNFNR------QC  401 (465)
T ss_dssp             SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE---TTTTEEEEEESSSCTTCCEEEEECSSTTCCC------BC
T ss_pred             cCceEEEEeccccccCCCceeEEeccCCceEEEEEEEc---CCCCEEEEEEeCCCCCceEEEEEECCCCCcc------ee
Confidence            1111              1112333333445554 577   6665543 444332    2433344433211      22


Q ss_pred             hhhhcccccceeeeeecCCCCCcEEEe
Q 017194          337 LIKNINLNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       337 ~~~~~~~~~~v~~~~~~~~~~~~l~s~  363 (375)
                      +............+.|+| ++++++..
T Consensus       402 lt~~~~~~~~~~~~~~S~-~~~y~v~~  427 (465)
T d1xfda1         402 LSCDLVENCTYFSASFSH-SMDFFLLK  427 (465)
T ss_dssp             SSTTSSSSCCCCEEEECT-TSSEEEEE
T ss_pred             eccccCCCCCEEEEEECC-CCCEEEEE
Confidence            322233445677889999 88887743

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.43  E-value=1.6e-10  Score=92.69  Aligned_cols=242  Identities=7%  Similarity=-0.025  Sum_probs=153.9

Q ss_pred             ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc--e
Q 017194           59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH--C  136 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~  136 (375)
                      ..+..+++.|||+++++...+++|..|+....  ...+..   ....+.+++|.++++++++...++.+..++....  .
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~---~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEc---CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            35788999999999999888999988886632  222222   3567899999999999998888888888886543  2


Q ss_pred             eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194          137 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML  216 (375)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (375)
                      .............+.+++.+++. ++++.+.++.+..+|...+.........  .... ............+.+..    
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ngi~~~~----  174 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHP--MLAR-SNSESVFPAANGLKRFG----  174 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECG--GGSC-SSTTCCSCSEEEEEEET----
T ss_pred             eeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCC--ccce-eeccCcccccccccccC----
Confidence            22211112445688999999997 7888788899999998766433222211  0000 00001123445566643    


Q ss_pred             cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194          217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV  296 (375)
Q Consensus       217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  296 (375)
                         +.++++.+..+.|..++.........                                  ....    ........+
T Consensus       175 ---~~l~~~~~~~~~i~~~~~~~~~~~~~----------------------------------~~~~----~~~~~pdgi  213 (302)
T d2p4oa1         175 ---NFLYVSNTEKMLLLRIPVDSTDKPGE----------------------------------PEIF----VEQTNIDDF  213 (302)
T ss_dssp             ---TEEEEEETTTTEEEEEEBCTTSCBCC----------------------------------CEEE----EESCCCSSE
T ss_pred             ---CceeeecCCCCeEEeccccccccccc----------------------------------cccc----cCCCCCcce
Confidence               55666777888888888775321100                                  0000    112234568


Q ss_pred             EEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC--CCCCcEEEeeC
Q 017194          297 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCDT  365 (375)
Q Consensus       297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~  365 (375)
                      +++   ++|+++++...++.|..++.....        ..+......-...++++|..  +|++.|+.++.
T Consensus       214 a~d---~dG~l~va~~~~~~V~~i~p~G~~--------~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         214 AFD---VEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEB---TTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEC---CCCCEEEEEcCCCcEEEECCCCCE--------EEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            999   999988888888999999877542        11222222334578899942  27777776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=2.6e-10  Score=89.26  Aligned_cols=237  Identities=8%  Similarity=0.000  Sum_probs=150.9

Q ss_pred             ccEEEEEEeCCCCeEEEEc-CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194           59 GPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL  137 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  137 (375)
                      .....+++.++|+..++.. ..+.+..++.....  .......+ ......++++++++++++....+.+++++-.+...
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~--~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----C--EEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce--EEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            4568999999998666544 45677777665432  12222211 23457889999998877776666777766555544


Q ss_pred             eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194          138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD  217 (375)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  217 (375)
                      +....  ......++++.++++ ++++-..+..+..++..... .......            .......+++.+     
T Consensus        91 ~~~~~--~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~-~~~~~~~------------~~~~p~~i~~~~-----  149 (260)
T d1rwia_          91 VLPFD--GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT-QTVLPFT------------GLNDPDGVAVDN-----  149 (260)
T ss_dssp             ECCCC--SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSS-CEECCCC------------SCCSCCEEEECT-----
T ss_pred             eeeee--eeeecccccccccce-eEeeccccccccccccccce-eeeeeec------------ccCCcceeeecC-----
Confidence            43333  235678999999987 66666667778777765433 2222211            123456888888     


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194          218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  297 (375)
Q Consensus       218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (375)
                       +++++++...++.|..+|.......                                       . ...........++
T Consensus       150 -~g~~~v~~~~~~~i~~~d~~~~~~~---------------------------------------~-~~~~~~~~p~gi~  188 (260)
T d1rwia_         150 -SGNVYVTDTDNNRVVKLEAESNNQV---------------------------------------V-LPFTDITAPWGIA  188 (260)
T ss_dssp             -TCCEEEEEGGGTEEEEECTTTCCEE---------------------------------------E-CCCSSCCSEEEEE
T ss_pred             -CCCEeeeccccccccccccccceee---------------------------------------e-eeccccCCCccce
Confidence             7888888888889999988753111                                       0 1112234567899


Q ss_pred             EeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194          298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS  373 (375)
Q Consensus       298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~  373 (375)
                      +.   ++|+++++....+.|..++......         .......-.....|++.+ +|+++++-..+++|+..+
T Consensus       189 ~d---~~g~l~vsd~~~~~i~~~~~~~~~~---------~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         189 VD---EAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EC---TTCCEEEEETTTTEEEEECTTCSCC---------EECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred             ee---eeeeeeeeecCCCEEEEEeCCCCeE---------EEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEEEEe
Confidence            98   8999988888889999888766421         111112224567899998 888777766677776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.2e-09  Score=85.89  Aligned_cols=234  Identities=12%  Similarity=0.112  Sum_probs=142.0

Q ss_pred             cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC---eEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194           39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK---EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS  115 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  115 (375)
                      .|.|.|.. |.....+..+...+.+.+|||||+.||......   .+.+.+...+...    ....+........|+|++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTS
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCC
Confidence            57777876 444555555678889999999999999876543   5667777654332    222236778889999999


Q ss_pred             CeEEEEeC-CCcEEEE--eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCC
Q 017194          116 SFLACADD-GGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLP  190 (375)
Q Consensus       116 ~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~  190 (375)
                      +.++.... ++...++  ...........  ..........+++++...+++...++  .|...++..+.......    
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~----  168 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW----  168 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC----
T ss_pred             CeeeEeeecCCccceeecccccccceeee--eccccccccccccccccceecccccCCceEeeeecccccceeeec----
Confidence            98887653 3333333  32222222222  23344455667777775566665555  45555655443322221    


Q ss_pred             CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-c--EEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-V--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                                .........++|      +++.++..+.++ .  +.+.+......                         
T Consensus       169 ----------~~~~~~~~~~sp------dg~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------  207 (269)
T d2hqsa1         169 ----------EGSQNQDADVSS------DGKFMVMVSSNGGQQHIAKQDLATGGV-------------------------  207 (269)
T ss_dssp             ----------SSSEEEEEEECT------TSSEEEEEEECSSCEEEEEEETTTCCE-------------------------
T ss_pred             ----------cccccccccccc------ccceeEEEeecCCceeeeEeecccccc-------------------------
Confidence                      235567778888      788877766543 3  44444443210                         


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC---CCeEEEEeCCCceeeeecchhhhhhhhcccc
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLN  344 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  344 (375)
                                       .+..+........||   |||+.|+-.+.   ...|+++++.....          ..+....
T Consensus       208 -----------------~~~~~~~~~~~p~~S---PDG~~i~f~s~~~~~~~l~~~~~dg~~~----------~~lt~~~  257 (269)
T d2hqsa1         208 -----------------QVLSSTFLDETPSLA---PNGTMVIYSSSQGMGSVLNLVSTDGRFK----------ARLPATD  257 (269)
T ss_dssp             -----------------EECCCSSSCEEEEEC---TTSSEEEEEEEETTEEEEEEEETTSCCE----------EECCCSS
T ss_pred             -----------------eEeecCccccceEEC---CCCCEEEEEEcCCCCcEEEEEECCCCCE----------EEEeCCC
Confidence                             122233455677899   99998875443   45789999988632          2344456


Q ss_pred             cceeeeeecC
Q 017194          345 KKVNWLCTTP  354 (375)
Q Consensus       345 ~~v~~~~~~~  354 (375)
                      +.+...+|+|
T Consensus       258 g~~~~p~WSP  267 (269)
T d2hqsa1         258 GQVKFPAWSP  267 (269)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEeEEeCC
Confidence            6778888998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.38  E-value=4.8e-09  Score=84.16  Aligned_cols=250  Identities=10%  Similarity=0.071  Sum_probs=156.4

Q ss_pred             CCceeEEEEecCCCCEEEEeCC-------CCcEEEEecccCceeeEeeec----CccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194           15 KATATCCIASRDRPGFVASSGE-------DGCICWFDLRSKDVQLVTDVG----NGPVTSLCFKSGNEDIIYVSSGKEVK   83 (375)
Q Consensus        15 ~~~i~~~~~~~~~~~~l~s~~~-------d~~i~iw~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~~d~~i~   83 (375)
                      -.....++|.|+ |+++++...       +|.|..||..++.........    ......++|.++++.++++...+.+.
T Consensus        17 ~~g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          17 IPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            344567899998 777665433       467889998877653332211    22356899999999888887777888


Q ss_pred             EEECCCCCcccccccccCC-CcceeEEEEcCCCCeEEEEeC---------------CCcEEEEeCcCceeeeeEecCccc
Q 017194           84 SFDVHMPASWRPLESYNYN-KEEINQIVCNPKSSFLACADD---------------GGDVKIIDIRQHCLYKSLRAGHSS  147 (375)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~  147 (375)
                      ..+..............+. -...+.+++.++|++.++-..               .|.|..++. .++......  .-.
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~--~~~  172 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT--AFQ  172 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE--EES
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC--Ccc
Confidence            8898754321111111111 123578999999987776422               234555554 233333222  334


Q ss_pred             ceeEEEEeeCCC----cEEEEeecCCeEEEeeCCCCCcceEEec--CCCCCCCCCCcccCCCceeEEeecCCccccCCCC
Q 017194          148 ICSSVQFIPWKP----WEVISGGLDSKLVMWDFSKGRPNKIVNF--GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK  221 (375)
Q Consensus       148 ~v~~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  221 (375)
                      ..+.++|+|+++    .++++-+..+.|..||+.....+.....  ..+.        ........+++.+      +|+
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~--------~~~~~pdGiavD~------~Gn  238 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG--------THEGGADGMDFDE------DNN  238 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC--------CSSCEEEEEEEBT------TCC
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc--------cccccceeeEEec------CCc
Confidence            457899999864    3556667788999998764433322110  0000        0112356788877      799


Q ss_pred             EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec
Q 017194          222 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF  301 (375)
Q Consensus       222 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  301 (375)
                      +.++....+.|.+||...+..                                        ...+........+++|.  
T Consensus       239 lyVa~~~~g~I~~~dp~~g~~----------------------------------------~~~i~~p~~~~t~~afg--  276 (314)
T d1pjxa_         239 LLVANWGSSHIEVFGPDGGQP----------------------------------------KMRIRCPFEKPSNLHFK--  276 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSC----------------------------------------SEEEECSSSCEEEEEEC--
T ss_pred             EEEEEcCCCEEEEEeCCCCEE----------------------------------------EEEEECCCCCEEEEEEe--
Confidence            888877889999999876421                                        11233334567899998  


Q ss_pred             CCCCc-EEEEecCCCeEEEEeCCCc
Q 017194          302 GERGK-YLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       302 ~~~~~-~l~s~~~dg~i~iwd~~~~  325 (375)
                       |+++ ++++.+.+|.|...++...
T Consensus       277 -~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         277 -PQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             -TTSSEEEEEETTTTEEEEEECSSC
T ss_pred             -CCCCEEEEEECCCCcEEEEECCCC
Confidence             8886 5677788899998887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.36  E-value=6.1e-10  Score=91.67  Aligned_cols=267  Identities=9%  Similarity=0.025  Sum_probs=151.7

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee--ecCccEEEEEEeCCCCeEE--EEcC-CCeEEEEECC
Q 017194           14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDII--YVSS-GKEVKSFDVH   88 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~--~~~~-d~~i~iwd~~   88 (375)
                      ....+.-|+|+|+ ++.|.++.. +.+..|.+.....+....  ........+.++++++.+.  ++.. .+.+..+.+.
T Consensus        38 ~~~~~s~la~s~d-~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHE-RKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTT-SSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCC-CCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            3455667999999 788777654 568888776533322222  1233456678888887543  3322 3455554432


Q ss_pred             CCC-cc------------cccccc-cCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCc-ee--eeeEec-Ccccce
Q 017194           89 MPA-SW------------RPLESY-NYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQH-CL--YKSLRA-GHSSIC  149 (375)
Q Consensus        89 ~~~-~~------------~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~--~~~~~~-~~~~~v  149 (375)
                      ... ..            ...... ......+.++.|+|+++++++++. ...|.+|+.... ..  ...... ......
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            110 00            000000 011234678999999999888764 457888876532 22  122220 234578


Q ss_pred             eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCC----CCCCCC--CCcccCCCceeEEeecCCccccCCCCEE
Q 017194          150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL----PENNGN--AGQCYNPAFVHAIAIPDADMLDKTNKIC  223 (375)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~l  223 (375)
                      +.++|+|+++.++++...+++|.+|++..++.........    +.....  ............+.++|      +|++|
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp------dG~~l  269 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF------SGKYM  269 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT------TSSEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC------CCCEE
Confidence            9999999999666777788999999998765443222110    000000  01111123456788988      89998


Q ss_pred             EEEec-C-----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194          224 VVAKG-D-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA  297 (375)
Q Consensus       224 ~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (375)
                      +++.. +     +.|..|++......                                  .....+..........+.++
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~g~~----------------------------------~~~~~~~~~~~~G~~p~~i~  315 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDCGSI----------------------------------EKQLFLSPTPTSGGHSNAVS  315 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCE----------------------------------EEEEEEEECSSCCTTCCCEE
T ss_pred             EEEcccCCCccceEEEEEEecCCCce----------------------------------eeEeEeeEEEcCCCCccEEE
Confidence            88753 1     23666665532100                                  00111122222334457788


Q ss_pred             EeecCC-CCcEEEEe-cCCCeEEEEeCCCc
Q 017194          298 FSMFGE-RGKYLISG-GNDKLVKVWDCSRF  325 (375)
Q Consensus       298 ~s~~~~-~~~~l~s~-~~dg~i~iwd~~~~  325 (375)
                      ++   | +|++|+++ ..++.|.+|+++..
T Consensus       316 ~~---p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         316 PC---PWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EC---TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ec---CCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            88   6 78977666 56799999988664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.33  E-value=4.9e-09  Score=84.13  Aligned_cols=246  Identities=13%  Similarity=0.086  Sum_probs=149.1

Q ss_pred             ccEEEEEEeCCCCeEEEEcC-------CCeEEEEECCCCCccccccc-ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194           59 GPVTSLCFKSGNEDIIYVSS-------GKEVKSFDVHMPASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKII  130 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  130 (375)
                      .....++|.++|+..++...       +++|..||..++........ .......-..++|.++++.++++.....+..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34567889999987766443       36788889886543211111 11112235679999999988888777778899


Q ss_pred             eCcCceeeeeEecCcc----cceeEEEEeeCCCcEEEEeec---------------CCeEEEeeCCCCCcceEEecCCCC
Q 017194          131 DIRQHCLYKSLRAGHS----SICSSVQFIPWKPWEVISGGL---------------DSKLVMWDFSKGRPNKIVNFGLPE  191 (375)
Q Consensus       131 d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~---------------d~~i~~wd~~~~~~~~~~~~~~~~  191 (375)
                      +........... ...    ...+.+++.++|. +.++-..               .|.|..++.. ++...... .   
T Consensus        98 ~~~g~~~~~~~~-~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~---  170 (314)
T d1pjxa_          98 QTDGTFEEIAKK-DSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-A---  170 (314)
T ss_dssp             ETTSCEEECCSB-CTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-E---
T ss_pred             eCCCcEEEEEec-cccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-C---
Confidence            986554322111 111    1357899999997 5665321               2344444432 33222221 1   


Q ss_pred             CCCCCCcccCCCceeEEeecCCccccCCCC-----EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNK-----ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       192 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                                -...+.++|+|      ++.     ++++-+..+.|..||+.......                      
T Consensus       171 ----------~~~pNGi~~~~------d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~----------------------  212 (314)
T d1pjxa_         171 ----------FQFPNGIAVRH------MNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----------------------  212 (314)
T ss_dssp             ----------ESSEEEEEEEE------CTTSCEEEEEEEETTTTEEEEEEEEETTEEE----------------------
T ss_pred             ----------cceeeeeEECC------CCCcceeEEEEEeecccceEEeeccCccccc----------------------
Confidence                      13446788887      343     44445677888888875321110                      


Q ss_pred             eeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc
Q 017194          267 AEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK  345 (375)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  345 (375)
                                  ..+....+.+ +......+++.   .+|++.++....+.|.+||.+.+         .....+.....
T Consensus       213 ------------~~~~~~~~~~~~~~~pdGiavD---~~GnlyVa~~~~g~I~~~dp~~g---------~~~~~i~~p~~  268 (314)
T d1pjxa_         213 ------------NKKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIEVFGPDGG---------QPKMRIRCPFE  268 (314)
T ss_dssp             ------------EEEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEEEECTTCB---------SCSEEEECSSS
T ss_pred             ------------eeeEEEEccccccccceeeEEe---cCCcEEEEEcCCCEEEEEeCCCC---------EEEEEEECCCC
Confidence                        0111222222 22345678998   89998888777899999998876         33333444456


Q ss_pred             ceeeeeecCCCCC-cEEEeeCCCeEEEEec
Q 017194          346 KVNWLCTTPTESE-NLVVCDTSKVVKVYSI  374 (375)
Q Consensus       346 ~v~~~~~~~~~~~-~l~s~~~dg~v~iw~~  374 (375)
                      ..++++|.| +++ ++++.+.+|.|...++
T Consensus       269 ~~t~~afg~-d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         269 KPSNLHFKP-QTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEEeC-CCCEEEEEECCCCcEEEEEC
Confidence            788999988 876 4566667788887765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=7.3e-09  Score=81.31  Aligned_cols=210  Identities=10%  Similarity=0.031  Sum_probs=127.3

Q ss_pred             CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC-
Q 017194            4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-   79 (375)
Q Consensus         4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-   79 (375)
                      .+...+.+..+...+...+|||| |+.||-...+   ..+.+.+...+.. ..+..+........|+|+|+.++..... 
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPD-Gk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~  104 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKT  104 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCCCcEEEecCCCceeeeEECCC-CCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecC
Confidence            45566777777888999999999 7888755332   2466666665554 4455567888899999999988876643 


Q ss_pred             C--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEE-eCCC--cEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194           80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF  154 (375)
Q Consensus        80 ~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  154 (375)
                      +  .+..+.......   .... ..........+++++..++.. ..++  .|.+.++..+.... +. ..........|
T Consensus       105 ~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~  178 (269)
T d2hqsa1         105 GSLNLYVMDLASGQI---RQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDADV  178 (269)
T ss_dssp             SSCEEEEEETTTCCE---EECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEEE
T ss_pred             Cccceeecccccccc---eeee-eccccccccccccccccceecccccCCceEeeeeccccccee-ee-ccccccccccc
Confidence            2  233333332211   1111 123344455677777665544 3444  45566665554332 33 35567778899


Q ss_pred             eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---Cc
Q 017194          155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GV  231 (375)
Q Consensus       155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~  231 (375)
                      +|++..++......+...+|..........+..             .........|+|      ||+.|+..+..   ..
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------~~~~~~~p~~SP------DG~~i~f~s~~~~~~~  239 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-------------STFLDETPSLAP------NGTMVIYSSSQGMGSV  239 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-------------CSSSCEEEEECT------TSSEEEEEEEETTEEE
T ss_pred             ccccceeEEEeecCCceeeeEeecccccceEee-------------cCccccceEECC------CCCEEEEEEcCCCCcE
Confidence            999995455555555555554443332233321             234567788999      89988765543   46


Q ss_pred             EEEEeCCCc
Q 017194          232 VDVINIESE  240 (375)
Q Consensus       232 i~i~d~~~~  240 (375)
                      |.++++...
T Consensus       240 l~~~~~dg~  248 (269)
T d2hqsa1         240 LNLVSTDGR  248 (269)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEECCCC
Confidence            788888763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.30  E-value=1.8e-08  Score=81.00  Aligned_cols=206  Identities=10%  Similarity=0.022  Sum_probs=130.6

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC----CeEEEEECCCCCc
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMPAS   92 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----~~i~iwd~~~~~~   92 (375)
                      .+..++|.++ +++.++-..++.|..|+.++++....+.........+++.++|+.+++...+    +.+...+......
T Consensus        41 ~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            3468899998 7888887788999999988776665555556678899999999877765432    3455555544322


Q ss_pred             ccccccccCCCcceeEEEEcCCCCeEEEEeC------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           93 WRPLESYNYNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ....... ........+.+.++|++.++...      .+.+..++...+ .+..+. ..-...+.++|+|+++.++++-+
T Consensus       120 ~~~~~~~-~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~-~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         120 QDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPII-QNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             EEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEE-EEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeccCC-CcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEe-eccceeeeeeeccccceEEEecc
Confidence            2222111 11345778999999986665432      233555655433 333333 23345688999999985567777


Q ss_pred             cCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194          167 LDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE  238 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  238 (375)
                      ..+.|..||+..... ........+.      ..........+++.+      +|++.++....+.|.+||..
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~------~~~~~~~PdGl~vD~------~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPY------YFTGHEGPDSCCIDS------DDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEE------ECCSSSEEEEEEEBT------TCCEEEEEETTTEEEEECTT
T ss_pred             cCCceEEEEEcCCCceeccccceeee------ccCCccceeeeeEcC------CCCEEEEEcCCCEEEEECCC
Confidence            889999999874322 2111100000      000112356788877      79988888889999999965

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.9e-08  Score=79.25  Aligned_cols=238  Identities=11%  Similarity=0.112  Sum_probs=154.0

Q ss_pred             cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc---CCCcceeEEEEcCCC-CeEEEE-eCCCcEEEEeCcC
Q 017194           60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN---YNKEEINQIVCNPKS-SFLACA-DDGGDVKIIDIRQ  134 (375)
Q Consensus        60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~~~-~~dg~i~iwd~~~  134 (375)
                      ....++++++++.+++-...+.|++||.+ ++....+....   ........+++.++. ..+++. +.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            35789999999877776777899999976 33322222111   111123445555543 344433 34567777775 5


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD  214 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (375)
                      ++....+..........+++.+++. ++++....+.+.+++.. ++.+..+....           +......+++.+  
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~-----------~~~~~~~i~~d~--  166 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSK-----------HLEFPNGVVVND--  166 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTT-----------TCSSEEEEEECS--
T ss_pred             ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-Cceeecccccc-----------cccccceeeecc--
Confidence            6666666534455678899999987 67777777888888854 56666554220           235677888887  


Q ss_pred             cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee--cCCCcc
Q 017194          215 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV--GGHTAA  292 (375)
Q Consensus       215 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  292 (375)
                          +++++++....+.|++||....                                         .+.++  .+....
T Consensus       167 ----~g~i~v~d~~~~~V~~~d~~G~-----------------------------------------~~~~~g~~g~~~~  201 (279)
T d1q7fa_         167 ----KQEIFISDNRAHCVKVFNYEGQ-----------------------------------------YLRQIGGEGITNY  201 (279)
T ss_dssp             ----SSEEEEEEGGGTEEEEEETTCC-----------------------------------------EEEEESCTTTSCS
T ss_pred             ----ceeEEeeeccccceeeeecCCc-----------------------------------------eeeeecccccccC
Confidence                7888888888899999987642                                         11111  233445


Q ss_pred             EEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCCeE
Q 017194          293 ASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVV  369 (375)
Q Consensus       293 v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v  369 (375)
                      ...+++.   ++|+++++-.. ++.|.+|+.. +         +++..+.  ........+++.| +|. |++++.+.+|
T Consensus       202 P~giavD---~~G~i~Vad~~~~~~v~~f~~~-G---------~~~~~~~~~~~~~~p~~vav~~-dG~-l~V~~~n~~v  266 (279)
T d1q7fa_         202 PIGVGIN---SNGEILIADNHNNFNLTIFTQD-G---------QLISALESKVKHAQCFDVALMD-DGS-VVLASKDYRL  266 (279)
T ss_dssp             EEEEEEC---TTCCEEEEECSSSCEEEEECTT-S---------CEEEEEEESSCCSCEEEEEEET-TTE-EEEEETTTEE
T ss_pred             Ccccccc---cCCeEEEEECCCCcEEEEECCC-C---------CEEEEEeCCCCCCCEeEEEEeC-CCc-EEEEeCCCeE
Confidence            7889999   89998877544 4579999854 4         2222221  1223567889988 886 5556688999


Q ss_pred             EEEec
Q 017194          370 KVYSI  374 (375)
Q Consensus       370 ~iw~~  374 (375)
                      ++|+.
T Consensus       267 ~~fr~  271 (279)
T d1q7fa_         267 YIYRY  271 (279)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=5.5e-08  Score=76.59  Aligned_cols=241  Identities=9%  Similarity=0.063  Sum_probs=156.2

Q ss_pred             ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec------CccEEEEEEeCCCC-eEEEE-cCCCeEEEEECC
Q 017194           17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG------NGPVTSLCFKSGNE-DIIYV-SSGKEVKSFDVH   88 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------~~~v~~l~~~~~~~-~l~~~-~~d~~i~iwd~~   88 (375)
                      .-..++++++ ++++++-..++.|++||.+ ++.+..+...      ......+++.++.. .+++. +.++.|..++..
T Consensus        24 ~P~gvavd~d-g~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCC-CCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            3578999998 7888887778899999965 6665555321      12345566655543 34333 334577777754


Q ss_pred             CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe-cCcccceeEEEEeeCCCcEEEEeec
Q 017194           89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGL  167 (375)
Q Consensus        89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~  167 (375)
                       +.....+..  ........+++.++++++++....+.+.+++. +++.+..+. ..+......+++.+++. ++++...
T Consensus       102 -g~~~~~~~~--~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~  176 (279)
T d1q7fa_         102 -GQFVRKFGA--TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR  176 (279)
T ss_dssp             -SCEEEEECT--TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG
T ss_pred             -ccceeecCC--CcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecccee-EEeeecc
Confidence             322222211  12345678999999988888877888989886 456666653 13456778899999987 7888888


Q ss_pred             CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCcceeecc
Q 017194          168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRS  246 (375)
Q Consensus       168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  246 (375)
                      .+.|++||.. ++.+..+...  .         .......|++.+      +++++++-.. ++.|.+|+...       
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~~--g---------~~~~P~giavD~------~G~i~Vad~~~~~~v~~f~~~G-------  231 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGGE--G---------ITNYPIGVGINS------NGEILIADNHNNFNLTIFTQDG-------  231 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESCT--T---------TSCSEEEEEECT------TCCEEEEECSSSCEEEEECTTS-------
T ss_pred             ccceeeeecC-Cceeeeeccc--c---------cccCCccccccc------CCeEEEEECCCCcEEEEECCCC-------
Confidence            8999999965 6666555311  0         123567899988      7887766543 44688887542       


Q ss_pred             cccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194          247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                                       +++              ..+ ...........+++.   ++|.++++ +.++.|++|.....
T Consensus       232 -----------------~~~--------------~~~-~~~~~~~~p~~vav~---~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         232 -----------------QLI--------------SAL-ESKVKHAQCFDVALM---DDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             -----------------CEE--------------EEE-EESSCCSCEEEEEEE---TTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -----------------CEE--------------EEE-eCCCCCCCEeEEEEe---CCCcEEEE-eCCCeEEEEEeeee
Confidence                             111              000 111222356889999   89976655 56899999998875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.17  E-value=3.8e-07  Score=73.10  Aligned_cols=243  Identities=11%  Similarity=0.060  Sum_probs=144.5

Q ss_pred             CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC----CCcEEEEeCc
Q 017194           58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD----GGDVKIIDIR  133 (375)
Q Consensus        58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~  133 (375)
                      ...+..++|.++|+..++-...+.|..|+..++........   .......+++.++|+++++...    .+.+...+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC---CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            44567899999998777777788999999876543322222   2456789999999988776543    2345555555


Q ss_pred             CceeeeeEec-CcccceeEEEEeeCCCcEEEEeec------CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194          134 QHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGL------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       134 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      .......... .-....+.+++.++|. +.++...      .+.+..++... +.+..+...             -...+
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~-------------~~~pn  180 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQN-------------ISVAN  180 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEE-------------ESSEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc-ceeEEEeec-------------cceee
Confidence            5444333320 1123577899999997 5555322      23455555443 333332211             23467


Q ss_pred             EEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194          207 AIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS  285 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~  285 (375)
                      .++|+|      +++.|+++ +..+.|..|++........                               .........
T Consensus       181 Gia~s~------dg~~lyvad~~~~~I~~~d~~~~g~~~~-------------------------------~~~~~~~~~  223 (319)
T d2dg1a1         181 GIALST------DEKVLWVTETTANRLHRIALEDDGVTIQ-------------------------------PFGATIPYY  223 (319)
T ss_dssp             EEEECT------TSSEEEEEEGGGTEEEEEEECTTSSSEE-------------------------------EEEEEEEEE
T ss_pred             eeeecc------ccceEEEecccCCceEEEEEcCCCceec-------------------------------cccceeeec
Confidence            899998      78766554 5678999998864211000                               000011111


Q ss_pred             ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194          286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD  364 (375)
Q Consensus       286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  364 (375)
                      ..+ ......+++.   ++|++.++....+.|.+||. .++.....   .+.....++...+++++|.+ +...+++..
T Consensus       224 ~~~-~~~PdGl~vD---~~G~l~Va~~~~g~V~~~~p-~G~~l~~i---~~P~~~~~~~~~~~~~~~~~-~~~~~~~t~  293 (319)
T d2dg1a1         224 FTG-HEGPDSCCID---SDDNLYVAMYGQGRVLVFNK-RGYPIGQI---LIPGRDEGHMLRSTHPQFIP-GTNQLIICS  293 (319)
T ss_dssp             CCS-SSEEEEEEEB---TTCCEEEEEETTTEEEEECT-TSCEEEEE---ECTTGGGTCSCBCCEEEECT-TSCEEEEEE
T ss_pred             cCC-ccceeeeeEc---CCCCEEEEEcCCCEEEEECC-CCcEEEEE---eCCCcCCCcCceeeeEEEeC-CCCEEEEEc
Confidence            222 2335678998   89998888888899999996 45432111   11112234555788999988 555555543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7.8e-08  Score=81.36  Aligned_cols=289  Identities=12%  Similarity=0.024  Sum_probs=154.3

Q ss_pred             ceeEEEEecCCCCEEEEe---------CCCCcEEEEecccCceeeEe--eecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194           17 TATCCIASRDRPGFVASS---------GEDGCICWFDLRSKDVQLVT--DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF   85 (375)
Q Consensus        17 ~i~~~~~~~~~~~~l~s~---------~~d~~i~iw~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw   85 (375)
                      .+....|+|| +++++.+         +..+.+.++|+.++......  ......+....|+|+|+.+|... ++.|.+.
T Consensus        62 ~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCC-CCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            5677889999 7877654         33578999999988753332  22344566789999999998876 6788888


Q ss_pred             ECCCCCccccccccc------CCC---------cceeEEEEcCCCCeEEEEeC-CCc-----------------------
Q 017194           86 DVHMPASWRPLESYN------YNK---------EEINQIVCNPKSSFLACADD-GGD-----------------------  126 (375)
Q Consensus        86 d~~~~~~~~~~~~~~------~~~---------~~v~~~~~~~~~~~l~~~~~-dg~-----------------------  126 (375)
                      +..++...+....-.      +..         +.-..+.|||||++||.... +..                       
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            877654333222110      000         11146779999999987642 222                       


Q ss_pred             ----------EEEEeCcCceeeeeEec-----CcccceeEEEEeeCCCcEEEEe-ecC---CeEEEeeCCCCCcceEEec
Q 017194          127 ----------VKIIDIRQHCLYKSLRA-----GHSSICSSVQFIPWKPWEVISG-GLD---SKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       127 ----------i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~-~~d---~~i~~wd~~~~~~~~~~~~  187 (375)
                                +.++|+.++........     .....+..+.|.|+++ +++.. ..+   ..+.++|..+++....+..
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~-~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe-EEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence                      34444443322111100     1122467789999987 44443 322   2588899998876655542


Q ss_pred             CCCCCCCCCCcccCCCce----eEEeecCCccccCCCCEEEE--Ee-cCC--cEEEEeCCCcce-----eecccccCCCC
Q 017194          188 GLPENNGNAGQCYNPAFV----HAIAIPDADMLDKTNKICVV--AK-GDG--VVDVINIESELN-----ISRSKSTTKPL  253 (375)
Q Consensus       188 ~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~l~~--~~-~dg--~i~i~d~~~~~~-----~~~~~~~~~~~  253 (375)
                      .            ...+|    ....|+|      +|+.++.  .+ .+|  .+..+++.....     .........-.
T Consensus       299 ~------------~~~wv~~~~~~p~~~~------dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~  360 (465)
T d1xfda1         299 E------------SEAWLHRQNEEPVFSK------DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD  360 (465)
T ss_dssp             E------------CSSCCCCCCCCCEECT------TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred             c------------CCceEeccCCceeEcc------CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCce
Confidence            2            11222    2345555      6664322  22 232  444443321110     00111111111


Q ss_pred             CC-ceeecccccceeeeeeeec-----------CCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC---CCeEE
Q 017194          254 KG-SQSTSKVNIRDAEMEILDQ-----------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVK  318 (375)
Q Consensus       254 ~~-~~~~s~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~---dg~i~  318 (375)
                      +. .+.+..+++.+.+.+....           ......+++............+.||   |++++++-...   --.+.
T Consensus       361 V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S---~~~~y~v~~~s~~~~P~~~  437 (465)
T d1xfda1         361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFS---HSMDFFLLKCEGPGVPMVT  437 (465)
T ss_dssp             EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEEC---TTSSEEEEECCSSSSCCEE
T ss_pred             EEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEEC---CCCCEEEEEeecCCCCeEE
Confidence            12 2356677776654332111           1111111111111234456788999   99999884332   34578


Q ss_pred             EEeCCCceeee
Q 017194          319 VWDCSRFQGVQ  329 (375)
Q Consensus       319 iwd~~~~~~~~  329 (375)
                      +++..+++.+.
T Consensus       438 ~~~~~~~~~~~  448 (465)
T d1xfda1         438 VHNTTDKKKMF  448 (465)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEECCCCCEEE
Confidence            88888776553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.01  E-value=2e-06  Score=67.85  Aligned_cols=197  Identities=12%  Similarity=-0.024  Sum_probs=130.1

Q ss_pred             eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194           19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      -+..|.+.++.+..+--..+.|.-||..+++. ..+. ....+.++++.+++.++++ +. ..+.++|..+++.. .+..
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~-~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~-~l~~   95 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLT-LHAE   95 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEE-EEEC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEE-CCCCcEEEEEecCCCEEEE-Ee-CccEEeecccceee-EEee
Confidence            35678887566666655678999999988764 3333 3567889999999876665 43 46889999877542 2222


Q ss_pred             cc--CCCcceeEEEEcCCCCeEEEEeC----CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194           99 YN--YNKEEINQIVCNPKSSFLACADD----GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus        99 ~~--~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      ..  .....++.+.+.|+|++.++...    .+.-.+|.+..++....+.  .-...+.++|+++++.++++-+..+.|.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCceEEEeecccceee
Confidence            11  11346889999999987665432    2345667766776555444  2345688999999986667777888999


Q ss_pred             EeeCCCCC------cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          173 MWDFSKGR------PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       173 ~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .|++....      .........           .......+++..      +|++.++.-..+.|..||...
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~-----------~~g~pdG~~vD~------~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTG-----------IKGGMDGSVCDA------EGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTT-----------SSSEEEEEEECT------TSCEEEEEETTTEEEEECTTC
T ss_pred             EeeecccccccccceEEEeccCc-----------ccccccceEEcC------CCCEEeeeeCCCceEEecCCC
Confidence            99875321      111111110           134567788876      788777777788899999653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.78  E-value=9.7e-06  Score=63.82  Aligned_cols=228  Identities=9%  Similarity=0.043  Sum_probs=138.9

Q ss_pred             EEEEeCCCCeEE-EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE
Q 017194           63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL  141 (375)
Q Consensus        63 ~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  141 (375)
                      ...|.+....|. +=-..+.|..||.++++. ... .+   ...+.++++.+++.++++ +.+ .+..+|..+++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~-~~---~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVH-AL---PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEE-EC---SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEE-EC---CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            456776544444 333567899999887542 222 22   456788999888866665 454 5889999888654332


Q ss_pred             ec---CcccceeEEEEeeCCCcEEEEeec----CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc
Q 017194          142 RA---GHSSICSSVQFIPWKPWEVISGGL----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD  214 (375)
Q Consensus       142 ~~---~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (375)
                      ..   .....++.+.+.|+|. +.++...    .+.-.+|.+..++...... .             ....+.+++++  
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~-------------~~~~Ng~~~s~--  157 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-D-------------ISIPNSICFSP--  157 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEE-E-------------ESSEEEEEECT--
T ss_pred             eeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCcEEEEee-c-------------cCCcceeeecC--
Confidence            20   1123678999999997 4444332    2344566666665443332 1             23567889988  


Q ss_pred             cccCCCCEEE-EEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194          215 MLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA  293 (375)
Q Consensus       215 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  293 (375)
                          +++.++ +-+..+.|..|++.......                                ...........+.....
T Consensus       158 ----d~~~l~~~dt~~~~I~~~~~d~~~~~~--------------------------------~~~~~~~~~~~~~~g~p  201 (295)
T d2ghsa1         158 ----DGTTGYFVDTKVNRLMRVPLDARTGLP--------------------------------TGKAEVFIDSTGIKGGM  201 (295)
T ss_dssp             ----TSCEEEEEETTTCEEEEEEBCTTTCCB--------------------------------SSCCEEEEECTTSSSEE
T ss_pred             ----CCceEEEeecccceeeEeeeccccccc--------------------------------ccceEEEeccCcccccc
Confidence                676554 55567889988875321100                                00011222333445567


Q ss_pred             EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe
Q 017194          294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC  363 (375)
Q Consensus       294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  363 (375)
                      ..+++.   .+|++.++.-..+.|..||.. +         +++..+.-....+++++|-.++.+.|+..
T Consensus       202 dG~~vD---~~GnlWva~~~~g~V~~~dp~-G---------~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         202 DGSVCD---AEGHIWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEEC---TTSCEEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cceEEc---CCCCEEeeeeCCCceEEecCC-C---------cEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            888888   899888877677899999965 4         33333333345789999975466555543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.60  E-value=3.4e-06  Score=65.97  Aligned_cols=95  Identities=18%  Similarity=0.177  Sum_probs=63.4

Q ss_pred             EEeCC--CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-C-----CcEEEEeCcCce
Q 017194           65 CFKSG--NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-G-----GDVKIIDIRQHC  136 (375)
Q Consensus        65 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~  136 (375)
                      ..+|+  |+.++..+ ++.|.+.|+.+++. +.+   ..+.+.+...+|||||+.||.... +     ..|.+++..+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~L---t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKI---VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEE---ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEE---ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            45788  99888765 56788889987653 333   223567889999999999886542 2     247788877776


Q ss_pred             eeeeEec-----CcccceeEEEEeeCCCcEEEEe
Q 017194          137 LYKSLRA-----GHSSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus       137 ~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~  165 (375)
                      ..+....     ..........|+|+++ .++..
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~-~l~~~  112 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIIST  112 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCC-EEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCC-EEEEE
Confidence            5432210     1223456788999998 45543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.53  E-value=3.2e-05  Score=63.42  Aligned_cols=173  Identities=7%  Similarity=-0.062  Sum_probs=92.5

Q ss_pred             EEEEEEeCCCCeEEEEcCCC-----------eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-CcEE
Q 017194           61 VTSLCFKSGNEDIIYVSSGK-----------EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-GDVK  128 (375)
Q Consensus        61 v~~l~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~  128 (375)
                      +.......+|+.++.|+.+.           .+.+||..+++-.........+.......++.+++++++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            33344455777777776421           37799998765322211122223334566788999998888654 5799


Q ss_pred             EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC------CeEEEeeCCCCCcceEEecCCCC-CCCC-CCccc
Q 017194          129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPE-NNGN-AGQCY  200 (375)
Q Consensus       129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~-~~~~-~~~~~  200 (375)
                      +||..+..-...-.......-...+..++++ +++.++.+      ..+.+||..+.+-...-....+. .... .....
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            9999876442211101112234566777887 67777643      36889998876432211100000 0000 00000


Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      ...... +...+      +++.++.+...+.+.+++..+..
T Consensus       181 ~~~~~~-~~~~~------~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         181 SDNHAW-LFGWK------KGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TTCSCC-EEECG------GGCEEECCSSSEEEEEECSTTCE
T ss_pred             ccceeE-EEEeC------CCCEEEecCcCCcEEecCcccCc
Confidence            011111 11122      57777777777777888877654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=8.6e-05  Score=59.66  Aligned_cols=239  Identities=15%  Similarity=0.108  Sum_probs=143.8

Q ss_pred             EEEeCCCCcEEEEecccCceeeEeeecC---------------------------------------ccE--EEEEEe--
Q 017194           31 VASSGEDGCICWFDLRSKDVQLVTDVGN---------------------------------------GPV--TSLCFK--   67 (375)
Q Consensus        31 l~s~~~d~~i~iw~~~~~~~~~~~~~~~---------------------------------------~~v--~~l~~~--   67 (375)
                      +.||+..|.|+|+-+.+++.++.+..-+                                       +..  ..+.+.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            6788999999999998887766553100                                       011  144453  


Q ss_pred             -CCCCeEEEEc-CCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCC------------------
Q 017194           68 -SGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGG------------------  125 (375)
Q Consensus        68 -~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg------------------  125 (375)
                       +||++++... .+++|.+.|+++.+..+.+..-  ....+..++..+  +..|++..+...                  
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP--n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecC--CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence             3788877665 4679999999987654433321  134556666544  455777766532                  


Q ss_pred             cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--------------eEEEeeC---------------
Q 017194          126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--------------KLVMWDF---------------  176 (375)
Q Consensus       126 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------------~i~~wd~---------------  176 (375)
                      .+.++|..+.+....+.  -......+.++++|++.++++....              .+.++++               
T Consensus       174 ~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEEEecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            36778998888877766  3446778999999996555553211              2333333               


Q ss_pred             --------CCC---CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceee
Q 017194          177 --------SKG---RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNIS  244 (375)
Q Consensus       177 --------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  244 (375)
                              +..   ..+..+.              -+...+.+.++|      ||+++++++ .+..+.++|++......
T Consensus       252 ngV~VVD~~~~~~~~v~~yIP--------------VpKsPHGV~vSP------DGKyi~VaGKLs~tVSViD~~Ki~~~~  311 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIP--------------IANNPHGCNMAP------DKKHLCVAGKLSPTVTVLDVTRFDAVF  311 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEE--------------EESSCCCEEECT------TSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred             CCceeecccccCCcceeEEEe--------------cCCCCCceEECC------CCCEEEEeCCcCCcEEEEEehhhhhhh
Confidence                    210   1111122              124567788888      899988876 57899999998643221


Q ss_pred             cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194          245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR  324 (375)
Q Consensus       245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~  324 (375)
                      .....           |..                 ....+. ...-.-..-+|.   .+|.-..|---|..|.-|++..
T Consensus       312 ~~~~~-----------~~~-----------------~~~~e~-elglgPLht~fd---~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         312 YENAD-----------PRS-----------------AVVAEP-ELGLGPLHTAFD---GRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             HSCC------------GGG-----------------GEEECC-BCCSCEEEEEEC---TTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccCC-----------ccc-----------------cEEeec-ccCcCccccccC---CCceEEEEeeccceEEEEecch
Confidence            11000           000                 001111 112334556777   7786666777899999999864


Q ss_pred             c
Q 017194          325 F  325 (375)
Q Consensus       325 ~  325 (375)
                      .
T Consensus       360 ~  360 (459)
T d1fwxa2         360 A  360 (459)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.52  E-value=2.2e-05  Score=61.11  Aligned_cols=97  Identities=10%  Similarity=-0.006  Sum_probs=62.7

Q ss_pred             EecC--CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC----C--CeEEEEECCCCCccc
Q 017194           23 ASRD--RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----G--KEVKSFDVHMPASWR   94 (375)
Q Consensus        23 ~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----d--~~i~iwd~~~~~~~~   94 (375)
                      .+|+  +..++.++  +|.|.+.|+.+++. ..+..+...+...+|||||+.|+....    +  ..|.+++..+++..+
T Consensus         6 ~sPdi~G~~v~f~~--~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVC--CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEE--TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEe--CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            4666  54444443  35688889988775 456667778899999999999987643    1  247777877664432


Q ss_pred             ccccc---cCCCcceeEEEEcCCCCeEEEEe
Q 017194           95 PLESY---NYNKEEINQIVCNPKSSFLACAD  122 (375)
Q Consensus        95 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~  122 (375)
                      .....   ...........|+|+++.|+...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            21110   01123456788999999888753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.37  E-value=4.1e-05  Score=61.57  Aligned_cols=233  Identities=11%  Similarity=0.012  Sum_probs=120.8

Q ss_pred             CCCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc-EEEEeecC------------------CeEEE
Q 017194          114 KSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW-EVISGGLD------------------SKLVM  173 (375)
Q Consensus       114 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d------------------~~i~~  173 (375)
                      ||+++++.. .+..|.+.|+++.+..+.+.......+..+...++.+. +++.++.+                  +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            788888776 67889999999988766554223445566666544332 45554442                  23678


Q ss_pred             eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC--cEEEEeCCCcceeecccccCC
Q 017194          174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--VVDVINIESELNISRSKSTTK  251 (375)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~  251 (375)
                      +|..+.+...++..+              .....+++++      +|+++++.+.+.  .+.+.++..........   .
T Consensus       178 ID~~tm~V~~QV~V~--------------g~ld~~~~s~------dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V---~  234 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS--------------GNLDNCDADY------EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV---F  234 (459)
T ss_dssp             EETTTTEEEEEEEES--------------SCCCCEEECS------SSSEEEEEESCTTCCSSHHHHTCCSEEEEEE---E
T ss_pred             EecCCceEEEEeeeC--------------CChhccccCC------CCCEEEEEeccccCCcchhhcccccceEEEE---e
Confidence            899888887777755              4566788888      799998887532  11111111100000000   0


Q ss_pred             CCCCceeecccccceee--eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceee
Q 017194          252 PLKGSQSTSKVNIRDAE--MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGV  328 (375)
Q Consensus       252 ~~~~~~~~s~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~  328 (375)
                      .......+.++|++-..  ....+............+.. ......+.++   |||+++++++. +.++.|+|++.....
T Consensus       235 n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vS---PDGKyi~VaGKLs~tVSViD~~Ki~~~  310 (459)
T d1fwxa2         235 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA---PDKKHLCVAGKLSPTVTVLDVTRFDAV  310 (459)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEEC---TTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             chHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEEC---CCCCEEEEeCCcCCcEEEEEehhhhhh
Confidence            00001112333333222  11122111111111111111 1224567888   99999887664 899999999865311


Q ss_pred             ee--cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194          329 QT--SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI  374 (375)
Q Consensus       329 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~  374 (375)
                      ..  ......+.......-.....+|.. .|.-..|---|..|.-|++
T Consensus       311 ~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         311 FYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             HHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred             hcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEEec
Confidence            00  000011101111122334456766 6654555568999999986

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=0.00024  Score=54.49  Aligned_cols=209  Identities=9%  Similarity=0.013  Sum_probs=129.2

Q ss_pred             eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCC
Q 017194           11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHM   89 (375)
Q Consensus        11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~   89 (375)
                      +..+...+..++|.+.++.++.+-..++.|...++........+...-..+..+++..-+..|..+ ...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            344445677899998844445555667889988887665544444334578899998766666544 4567999999875


Q ss_pred             CCcccccccccCCCcceeEEEEcCCCCeEEEEeCC---CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194           90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDG---GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG  166 (375)
Q Consensus        90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  166 (375)
                      ... ..+..  ........+++.|...+++.....   ..|..-++.......... ..-....+|++.+.++.++.+-.
T Consensus       111 ~~~-~~l~~--~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         111 TQR-RVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             CSC-EEEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTTTEEEEEET
T ss_pred             ceE-EEEec--ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEeecCcEEEEEeC
Confidence            432 22211  113567899999977777655432   235555554333322233 23346689999988874445556


Q ss_pred             cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194          167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS  244 (375)
Q Consensus       167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  244 (375)
                      ..+.|...|+........+. +             .....+|++.       ++.+..+-...+.|...|..+++...
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~-~-------------~~~P~~lav~-------~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLE-G-------------LQYPFAVTSY-------GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEE-C-------------CCSEEEEEEE-------TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCCCeEEEEC-C-------------CCCcEEEEEE-------CCEEEEEECCCCEEEEEECCCCccce
Confidence            77899999987544333332 2             1234577774       24444444467889999998765443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.95  E-value=0.0044  Score=53.09  Aligned_cols=206  Identities=11%  Similarity=0.015  Sum_probs=113.9

Q ss_pred             CCEEEEeCCCCcEEEEec-ccCceeeEeeecC----ccE-------EEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194           28 PGFVASSGEDGCICWFDL-RSKDVQLVTDVGN----GPV-------TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP   95 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~----~~v-------~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~   95 (375)
                      +.++++.+.++.|.-.|. ++|+.+-++....    ...       ..+++.  +..++.++.|+.+.-.|.++++....
T Consensus        63 g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~  140 (571)
T d2ad6a1          63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence            444444444678888887 4798877664210    000       123343  34577788899999999999876443


Q ss_pred             cccccCC-CcceeEEEEcCCCCeEEEEe------CCCcEEEEeCcCceeeeeEecCcc----------------------
Q 017194           96 LESYNYN-KEEINQIVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLRAGHS----------------------  146 (375)
Q Consensus        96 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~----------------------  146 (375)
                      ......+ ...++..-.-.++ .++.+.      ..|.|+-+|+++++.+-.+. ...                      
T Consensus       141 ~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~-t~~~~~~~~~~~~~~~~~~~~~~~~  218 (571)
T d2ad6a1         141 VEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF-ATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE-SSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             ccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe-ccCCcccccccccccccccccCccc
Confidence            3221111 1111111111133 444444      36789999999999887664 110                      


Q ss_pred             ---------------cce-eEEEEeeCCCcEEEEeec----------------CCeEEEeeCCCCCcceEEecCCCCCCC
Q 017194          147 ---------------SIC-SSVQFIPWKPWEVISGGL----------------DSKLVMWDFSKGRPNKIVNFGLPENNG  194 (375)
Q Consensus       147 ---------------~~v-~~~~~~~~~~~~l~~~~~----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~  194 (375)
                                     ..+ ...++.+... ++..+..                ...+.-.|.++++....++....+.-.
T Consensus       219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g-~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd  297 (571)
T d2ad6a1         219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCCcccccCCCccccccccchhcC-eeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence                           011 2345666665 4444333                346788899999988877743211110


Q ss_pred             CCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          195 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                        ..+..+.....+.....     ....++.++.+|.+.++|..+++.+..
T Consensus       298 --~D~~~~~~l~~~~~~g~-----~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         298 --FAGVNQMVLTDQPVNGK-----MTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             --CCCCCCCEEEEEEETTE-----EEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             --cccccccceeeeeccCc-----cccceeeccccceEEEEecCCCcEeee
Confidence              00111112222222210     112567888999999999999887643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.0022  Score=49.07  Aligned_cols=225  Identities=9%  Similarity=-0.020  Sum_probs=133.5

Q ss_pred             cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc-CCCeEEEEECCCCCcccccc-cccCCCcceeEEEEcCCCC
Q 017194           39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSS  116 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~  116 (375)
                      .|+-.++.+.+....+. ....+.+++|.+..+.|.-+. ..+.|...++.......... ........+..+++.+.+.
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            48888988665443333 455678999998877776654 45677777765322111111 1111234567889887666


Q ss_pred             eEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe-ecCCeEEEeeCCCCCcceEEecCCCCCCC
Q 017194          117 FLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG-GLDSKLVMWDFSKGRPNKIVNFGLPENNG  194 (375)
Q Consensus       117 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  194 (375)
                      .|+.. ...+.|.+.++........+. ........++++|...+++.+. +..+.|.-.++... ....+...      
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~------  161 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE------  161 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECS------
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceeccccc------
Confidence            66555 456789999997665555555 4556789999999776455543 23456777776643 33333211      


Q ss_pred             CCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeee
Q 017194          195 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD  273 (375)
Q Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~  273 (375)
                            .-.....+++.+      .++.|..+ ...+.|...++.....                               
T Consensus       162 ------~~~~p~gl~iD~------~~~~lYw~d~~~~~I~~~~~dG~~~-------------------------------  198 (266)
T d1ijqa1         162 ------NIQWPNGITLDL------LSGRLYWVDSKLHSISSIDVNGGNR-------------------------------  198 (266)
T ss_dssp             ------SCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTSCSC-------------------------------
T ss_pred             ------ccceeeEEEeec------cccEEEEecCCcCEEEEEECCCCCE-------------------------------
Confidence                  124568899987      45555555 5567888888864211                               


Q ss_pred             cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          274 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                             ..+...........++++.    ++.+..+-..++.|...+..+++
T Consensus       199 -------~~~~~~~~~~~~p~~lav~----~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         199 -------KTILEDEKRLAHPFSLAVF----EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             -------EEEEECTTTTSSEEEEEEE----TTEEEEEETTTTEEEEEETTTCC
T ss_pred             -------EEEEeCCCcccccEEEEEE----CCEEEEEECCCCeEEEEECCCCc
Confidence                   1111222223345677775    44555565667888888877763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.93  E-value=0.0034  Score=53.86  Aligned_cols=158  Identities=9%  Similarity=-0.000  Sum_probs=93.0

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecC----ccEEEEEEeCCCCeEEEEc------CCCeEEEEECCCCCccccccc
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN----GPVTSLCFKSGNEDIIYVS------SGKEVKSFDVHMPASWRPLES   98 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~   98 (375)
                      ..|+.++.||.+.-.|.++|+.+.......    ..++.--.-.++ .++.+.      ..|.|+-+|+.+++..-....
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            356677889999999999999866554211    111111111233 344443      367899999999876433221


Q ss_pred             ccC----------------------------------CCcce-eEEEEcCCCCeEEEEeC----------------CCcE
Q 017194           99 YNY----------------------------------NKEEI-NQIVCNPKSSFLACADD----------------GGDV  127 (375)
Q Consensus        99 ~~~----------------------------------~~~~v-~~~~~~~~~~~l~~~~~----------------dg~i  127 (375)
                      ...                                  ....+ ...++.+....++.+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            100                                  01112 23456666666665543                2457


Q ss_pred             EEEeCcCceeeeeEecCcc--------cceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCCCcceEEec
Q 017194          128 KIIDIRQHCLYKSLRAGHS--------SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNF  187 (375)
Q Consensus       128 ~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~  187 (375)
                      ...|+++++.+-.++..|.        ....-.....+++  ..++..+.+|.+.++|..+++.+...+.
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~  344 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeecc
Confidence            7889999998877762111        1112222333443  2467788999999999999998866543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=0.0023  Score=48.82  Aligned_cols=221  Identities=8%  Similarity=-0.001  Sum_probs=131.2

Q ss_pred             CcEEEEecccCce-----eeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcccccccccCCCcceeEEEE
Q 017194           38 GCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC  111 (375)
Q Consensus        38 ~~i~iw~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  111 (375)
                      +.|+-.+++....     ...+..+...+..++|.+..+.|.-+ ..++.|+..++........+..   ....+..+++
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~---~~~~p~~iAv   86 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ---DLGSPEGIAL   86 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT---TCCCEEEEEE
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe---ccccccEEEE
Confidence            3566666654322     22344445568889999877777665 4457898888875433222211   1346788999


Q ss_pred             cCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC--CeEEEeeCCCCCcceEEecC
Q 017194          112 NPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       112 ~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~  188 (375)
                      ..-+..|+.+ ...+.|.+.++........+. .....+..+++.|...+++.+-...  ..|.--++.... ...+...
T Consensus        87 D~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~  164 (263)
T d1npea_          87 DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQD  164 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECT
T ss_pred             eccCCeEEEeccCCCEEEEEecCCceEEEEec-ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeee
Confidence            8766666544 456789999987554333333 3345788999999887545453322  334444555333 3333211


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194          189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA  267 (375)
Q Consensus       189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  267 (375)
                                  .-.....|++.+      .++.|..+ ...+.|...++....                          
T Consensus       165 ------------~~~~P~glaiD~------~~~~lYw~d~~~~~I~~~~~~g~~--------------------------  200 (263)
T d1npea_         165 ------------NLGLPNGLTFDA------FSSQLCWVDAGTHRAECLNPAQPG--------------------------  200 (263)
T ss_dssp             ------------TCSCEEEEEEET------TTTEEEEEETTTTEEEEEETTEEE--------------------------
T ss_pred             ------------cccccceEEEee------cCcEEEEEeCCCCEEEEEECCCCC--------------------------
Confidence                        124567899987      45556555 466788888887421                          


Q ss_pred             eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194          268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ  326 (375)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~  326 (375)
                                  .+.+  +.+-. ...+|++.    ++.+..+-...+.|...|..+++
T Consensus       201 ------------~~~v--~~~~~-~P~~lav~----~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         201 ------------RRKV--LEGLQ-YPFAVTSY----GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             ------------EEEE--EECCC-SEEEEEEE----TTEEEEEETTTTEEEEEETTTTE
T ss_pred             ------------eEEE--ECCCC-CcEEEEEE----CCEEEEEECCCCEEEEEECCCCc
Confidence                        1111  12222 23577775    45555666667889999998874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.82  E-value=0.0076  Score=51.83  Aligned_cols=208  Identities=10%  Similarity=0.031  Sum_probs=115.2

Q ss_pred             CCEEEEeCCCCcEEEEec-ccCceeeEeeecCc----------cE-EEEEEeCC----CCeEEEEcCCCeEEEEECCCCC
Q 017194           28 PGFVASSGEDGCICWFDL-RSKDVQLVTDVGNG----------PV-TSLCFKSG----NEDIIYVSSGKEVKSFDVHMPA   91 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~~----------~v-~~l~~~~~----~~~l~~~~~d~~i~iwd~~~~~   91 (375)
                      +.++++.+.++.+...|. ++|+.+-.+.....          .+ ..+++.++    ..+++.++.|+.|.-.|.++++
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~  142 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence            444455555567777786 57888776642110          01 23455433    3468888889999999999987


Q ss_pred             cccccccccCCC-cceeEEEEcC--CCCeEEEEeC------CCcEEEEeCcCceeeeeEecCc-----------------
Q 017194           92 SWRPLESYNYNK-EEINQIVCNP--KSSFLACADD------GGDVKIIDIRQHCLYKSLRAGH-----------------  145 (375)
Q Consensus        92 ~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~-----------------  145 (375)
                      ..........+. ..++   -.|  -+..++++..      .|.|+-+|+++++.+-++....                 
T Consensus       143 ~~w~~~~~d~~~~~~~t---~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  219 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLT---IAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (596)
T ss_dssp             EEEEEECCCGGGTCBCC---SCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             eeccccccccccccccc---cCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence            654443211111 1111   112  1334555542      4889999999999987764110                 


Q ss_pred             -------------------cc-ceeEEEEeeCCCcEEEEeec----------------CCeEEEeeCCCCCcceEEecCC
Q 017194          146 -------------------SS-ICSSVQFIPWKPWEVISGGL----------------DSKLVMWDFSKGRPNKIVNFGL  189 (375)
Q Consensus       146 -------------------~~-~v~~~~~~~~~~~~l~~~~~----------------d~~i~~wd~~~~~~~~~~~~~~  189 (375)
                                         .. .-..+++.+... ++..+..                ...+.-.|+++++....++...
T Consensus       220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~-lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~  298 (596)
T d1w6sa_         220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (596)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             ccccccccccCCCCceecCCCccccccccccCCC-eeeccccccccccccccccccccccccccccccccccccccccee
Confidence                               00 112345666655 4444332                2458888999999888777442


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194          190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR  245 (375)
Q Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  245 (375)
                      .+.-..  .  ......-+.....  .....+.++.+..+|.+.++|..+++.+..
T Consensus       299 ~D~Wd~--d--~~~~~~l~d~~~~--~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         299 HDEWDY--A--GVNVMMLSEQKDK--DGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             TCSSCC--C--CCCCCEEEEEECT--TSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccCC--c--cccceeeeecccc--ccccccceeccccccceeeecCCCCceeee
Confidence            111000  0  0111111111100  000124677888999999999999887654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.0049  Score=47.00  Aligned_cols=210  Identities=12%  Similarity=0.025  Sum_probs=122.2

Q ss_pred             eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc----eeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEE
Q 017194           10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKS   84 (375)
Q Consensus        10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~i   84 (375)
                      .+......+..++|.+..+.+..+=..++.|.-.++....    ....+......+..|++.+.+..|..+ ...+.|.+
T Consensus        24 ~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v  103 (266)
T d1ijqa1          24 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (266)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEe
Confidence            3333445677899998734444444456667766664322    112222233556788888766666555 44578999


Q ss_pred             EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194           85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  162 (375)
                      .++........+.   ........+++.|...+|+...  ..+.|...++.......... ..-....++++.+.++.++
T Consensus       104 ~~~~g~~~~~~~~---~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~-~~~~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         104 ADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLY  179 (266)
T ss_dssp             EETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEE
T ss_pred             EecCCceEEEEEc---CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-cccceeeEEEeeccccEEE
Confidence            9988543222222   1235678899998766666554  33457777765443333333 3335678999999887555


Q ss_pred             EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194          163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL  241 (375)
Q Consensus       163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  241 (375)
                      .+-...+.|...|+.............           ......+|++..       +.+..+-..++.|...+..++.
T Consensus       180 w~d~~~~~I~~~~~dG~~~~~~~~~~~-----------~~~~p~~lav~~-------~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         180 WVDSKLHSISSIDVNGGNRKTILEDEK-----------RLAHPFSLAVFE-------DKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTT-----------TTSSEEEEEEET-------TEEEEEETTTTEEEEEETTTCC
T ss_pred             EecCCcCEEEEEECCCCCEEEEEeCCC-----------cccccEEEEEEC-------CEEEEEECCCCeEEEEECCCCc
Confidence            665677899999987544433333210           112355677752       4444444466788888877654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=0.0074  Score=45.80  Aligned_cols=203  Identities=14%  Similarity=0.202  Sum_probs=126.4

Q ss_pred             EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc
Q 017194           20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY   99 (375)
Q Consensus        20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~   99 (375)
                      +.-.+|. .+.||--+ ..++.++|+++.+.++...- .++|.--.|-.+. .|+..+ +..|+-|+++...  .+.+.+
T Consensus        67 sAIMhP~-~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s--~P~k~f  139 (327)
T d1utca2          67 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES--QPVKMF  139 (327)
T ss_dssp             EEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSC--CCEEEE
T ss_pred             hhhcCCC-CcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCC--Cchhhh
Confidence            3456787 67777655 45899999999998888775 4567666776543 455555 6789999996432  344444


Q ss_pred             cCC----CcceeEEEEcCCCCeEEEEe-------CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCC--CcEEEEee
Q 017194          100 NYN----KEEINQIVCNPKSSFLACAD-------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK--PWEVISGG  166 (375)
Q Consensus       100 ~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~  166 (375)
                      ..|    ...|..-..+++.++++..+       -.|.+.+|..+.+ .-+.+. +|......+.+..+.  ..+|+.+.
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC-CSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc-ceeeeeEEEEcCCCCCCceEEEEEE
Confidence            433    34677888899999876543       2367889987644 345566 776554444332211  11233222


Q ss_pred             ---cCCeEEEeeCCCCCc------ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194          167 ---LDSKLVMWDFSKGRP------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI  237 (375)
Q Consensus       167 ---~d~~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  237 (375)
                         ..+++.+.++.....      .+..+...|+..       ..+..-++.+++      ....+..-+.-|.|++||+
T Consensus       218 r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea-------~~DFPvamqvs~------kygiiyviTK~G~i~lyDl  284 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA-------QNDFPVAMQISE------KHDVVFLITKYGYIHLYDL  284 (327)
T ss_dssp             EETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTC-------TTCCEEEEEEET------TTTEEEEEETTSEEEEEET
T ss_pred             CCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccc-------cCCcEEEEEeec------cCCEEEEEecCcEEEEEEc
Confidence               235777777754211      112222111110       124566788887      6888999999999999999


Q ss_pred             CCcceee
Q 017194          238 ESELNIS  244 (375)
Q Consensus       238 ~~~~~~~  244 (375)
                      .++...+
T Consensus       285 eTgt~i~  291 (327)
T d1utca2         285 ETGTCIY  291 (327)
T ss_dssp             TTCCEEE
T ss_pred             ccccEEE
Confidence            9975443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=0.0097  Score=45.16  Aligned_cols=265  Identities=9%  Similarity=0.123  Sum_probs=144.4

Q ss_pred             CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC
Q 017194           37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS  116 (375)
Q Consensus        37 d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  116 (375)
                      ...|.|.|+.......+-..   .-.+.-.+|..+.|+.-+ ..++.++|+++.+.++...   . ..+|.--.|-.+. 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~---~-~e~VvfWkWis~~-  114 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT---M-TDDVTFWKWISLN-  114 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE---C-SSCCCEEEESSSS-
T ss_pred             CceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE---c-CCCcEEEEecCCC-
Confidence            35788888876654322221   122445678887776655 6799999999754443333   2 4577777776554 


Q ss_pred             eEEEEeCCCcEEEEeCcCc-eeeeeEecCcc----cceeEEEEeeCCCcEEEEee--c----CCeEEEeeCCCCCcceEE
Q 017194          117 FLACADDGGDVKIIDIRQH-CLYKSLRAGHS----SICSSVQFIPWKPWEVISGG--L----DSKLVMWDFSKGRPNKIV  185 (375)
Q Consensus       117 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~--~----d~~i~~wd~~~~~~~~~~  185 (375)
                      .|+..+ +..|+-|+++.. .+.+.+. .|.    ..|-.-..+++.+|++++|=  .    .|.+.+|..+.+ ..+.+
T Consensus       115 ~L~lVT-~taVYHW~~~g~s~P~k~fd-R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~i  191 (327)
T d1utca2         115 TVALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPI  191 (327)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEE
T ss_pred             EEEEEc-CCceEEEcccCCCCchhhhh-hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccc
Confidence            555443 467999999643 4555555 443    35666777888888666652  2    367889997743 22333


Q ss_pred             ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe---cCCcEEEEeCCCccee-ecccccCCCCCCceeecc
Q 017194          186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSK  261 (375)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~s~  261 (375)
                      + +            |...-..+.+...   .....+++.+.   ..+++++.++...... ..+.              
T Consensus       192 e-G------------haa~F~~~~~~g~---~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~--------------  241 (327)
T d1utca2         192 E-G------------HAASFAQFKMEGN---AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP--------------  241 (327)
T ss_dssp             C-C------------SEEEEEEECCTTC---SSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC--------------
T ss_pred             c-c------------eeeeeEEEEcCCC---CCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc--------------
Confidence            2 1            1111111111100   00112333322   2367888888753110 0000              


Q ss_pred             cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194          262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI  341 (375)
Q Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  341 (375)
                                     .+.......-....+-.-++..|   +.-..+..-+.-|.|.+||+.++..+         ..-.
T Consensus       242 ---------------kk~vdi~fppea~~DFPvamqvs---~kygiiyviTK~G~i~lyDleTgt~i---------~~nR  294 (327)
T d1utca2         242 ---------------KKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGTCI---------YMNR  294 (327)
T ss_dssp             ---------------CEEEECCCCTTCTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCCEE---------EEEE
T ss_pred             ---------------ceeEEEECCccccCCcEEEEEee---ccCCEEEEEecCcEEEEEEcccccEE---------EEee
Confidence                           00011111122224556678888   77778888888999999999999543         2222


Q ss_pred             ccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194          342 NLNKKVNWLCTTPTESENLVVCDTSKVVKV  371 (375)
Q Consensus       342 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i  371 (375)
                      -..+.|...+-.. +..-++....+|.|.-
T Consensus       295 Is~~~iF~~a~~~-~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         295 ISGETIFVTAPHE-ATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CCSSCEEEEEEET-TTTEEEEEETTSEEEE
T ss_pred             cCCCceEEeccCC-CCceEEEECCCCeEEE
Confidence            2233444333333 3233555556666643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.46  E-value=0.018  Score=46.47  Aligned_cols=121  Identities=12%  Similarity=0.033  Sum_probs=70.7

Q ss_pred             CCCceeEEEEecCCCCEEEEeCCC-CcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCC------CeEEEE
Q 017194           14 HKATATCCIASRDRPGFVASSGED-GCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSG------KEVKSF   85 (375)
Q Consensus        14 h~~~i~~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d------~~i~iw   85 (375)
                      |.......++.++ +.+++.|+.+ ..+.+||..+..-...-... ...-...+..++|+.++.++.+      ..+.+|
T Consensus        74 ~~~~~~~~~~~~~-g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y  152 (387)
T d1k3ia3          74 HDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  152 (387)
T ss_dssp             CCCSSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             cccceeEEEEecC-CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeee
Confidence            3333445678888 8888888765 58999998876543221111 1223456677889988888753      368999


Q ss_pred             ECCCCCccccccccc-------CCC-----cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194           86 DVHMPASWRPLESYN-------YNK-----EEINQIVCNPKSSFLACADDGGDVKIIDIRQHC  136 (375)
Q Consensus        86 d~~~~~~~~~~~~~~-------~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  136 (375)
                      |..+.+ +..+....       .+.     ..-..+...++++.+..+...+.+.+++..+..
T Consensus       153 d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         153 SPSSKT-WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             ETTTTE-EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             cCCCCc-eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            988643 22221110       000     011122334466667777667777777776554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.42  E-value=0.028  Score=47.85  Aligned_cols=78  Identities=8%  Similarity=0.079  Sum_probs=55.6

Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      |.+.-||+.+++.+.++..+.+            ..--.++.        .+.++++|+.||.++.+|..+++.+.....
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~------------~~gg~l~T--------agglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH------------WNGGTLST--------AGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS------------CCCCEEEE--------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCC------------CCCceeEE--------CCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            5678889999988888775521            11112222        477888999999999999999999987776


Q ss_pred             cCCCCCCceeecccccce
Q 017194          249 TTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~  266 (375)
                      ........+.+..+|++.
T Consensus       498 ~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         498 QSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             SSCCCSCCEEEEETTEEE
T ss_pred             CCCccccCEEEEECCEEE
Confidence            655555556667777643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.36  E-value=0.0087  Score=51.11  Aligned_cols=148  Identities=9%  Similarity=-0.022  Sum_probs=92.1

Q ss_pred             CcEEEEecccCceeeEeeecCccE---------EEEEEeCCC---CeEEEEcCCCeEEEEECCCCCcccccccccC----
Q 017194           38 GCICWFDLRSKDVQLVTDVGNGPV---------TSLCFKSGN---EDIIYVSSGKEVKSFDVHMPASWRPLESYNY----  101 (375)
Q Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~~v---------~~l~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----  101 (375)
                      ..|.-.|+++++....++.....+         .-.....++   +.++.+..+|.+.++|..+++.+........    
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            357777889998876665422111         112222233   3566778889999999988765422211000    


Q ss_pred             ---------------------------CC--cceeEEEEcCCCCeEEEEeC-----------------------------
Q 017194          102 ---------------------------NK--EEINQIVCNPKSSFLACADD-----------------------------  123 (375)
Q Consensus       102 ---------------------------~~--~~v~~~~~~~~~~~l~~~~~-----------------------------  123 (375)
                                                 -.  ..-...+++|+...++....                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                       00  00124456676666554332                             


Q ss_pred             -------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          124 -------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       124 -------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                             .|.+.-+|+.+++.+-.+.  ...+..+-.+.-.+. +++.|+.||.++.+|.++|+.+.+++.+
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~--~~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCcccccceEEEeCCCCeEeeecc--CCCCCCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEEECC
Confidence                   2567888999998887766  233333323344455 7888999999999999999999999866

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.32  E-value=0.024  Score=44.75  Aligned_cols=162  Identities=15%  Similarity=0.077  Sum_probs=93.6

Q ss_pred             eeEEEEecCCCCEEEEeCC------------CCcEEEEecccCce-eeEeeecC-------ccEEEEEE--eCCCC-eEE
Q 017194           18 ATCCIASRDRPGFVASSGE------------DGCICWFDLRSKDV-QLVTDVGN-------GPVTSLCF--KSGNE-DII   74 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~~~------------d~~i~iw~~~~~~~-~~~~~~~~-------~~v~~l~~--~~~~~-~l~   74 (375)
                      --.++..|+ +..+++++.            .|.|.++|+.+.+. ...+....       -....+.+  .+++. +|+
T Consensus        37 ~EDi~~~~d-g~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCEEEECTT-SEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceEEECCC-CcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            446788888 666666542            48899999876543 22222111       12334443  34555 344


Q ss_pred             EE---cCCCeEEEEECCCCC-cccccccccC-CCcceeEEEEcCCCCeEEEEeC---------------CCcEEEEeCcC
Q 017194           75 YV---SSGKEVKSFDVHMPA-SWRPLESYNY-NKEEINQIVCNPKSSFLACADD---------------GGDVKIIDIRQ  134 (375)
Q Consensus        75 ~~---~~d~~i~iwd~~~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~  134 (375)
                      +.   ....+|.+|++.... .+.-+..... .....+++++..++.++++-..               -+...+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            43   235688888875432 2222222221 1245678888888877777311               12334444434


Q ss_pred             ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc
Q 017194          135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN  182 (375)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  182 (375)
                      ++......  .-...+.|+++|+++.++++-+..++|+.|++.....+
T Consensus       196 ~~~~~~~~--~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         196 NDVRVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             SCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEcC--CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc
Confidence            43322222  34567999999999877777788899999998755433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.28  E-value=0.044  Score=46.96  Aligned_cols=78  Identities=6%  Similarity=-0.020  Sum_probs=54.9

Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      |.|.-||+.+++........              ....+=.++.      .+.+++.|+.||.++.+|.++++.+.+...
T Consensus       453 G~l~A~D~~TG~~~W~~~~~--------------~~~~gg~lsT------agglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER--------------FAVWGGTMAT------AGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES--------------SCCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccCCC--------------CCCccceeEe------cCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            46777777777777666533              1111111111      477888899999999999999999988877


Q ss_pred             cCCCCCCceeecccccce
Q 017194          249 TTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~  266 (375)
                      .......-+.+..||++.
T Consensus       513 ~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         513 PSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             SSCCCSCCEEEEETTEEE
T ss_pred             CCCcccCCeEEEECCEEE
Confidence            766666667777888753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.01  Score=50.90  Aligned_cols=61  Identities=13%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       125 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      |.|.-+|+.+++.+-... . ..++.+-..+..+. +++.|+.||.++.+|.++|+.+.+++.+
T Consensus       466 G~l~AiD~~TG~i~W~~~-~-~~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHK-E-HLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEE-E-SSCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CeEEEEcCCCCcEEeecC-C-CCCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            678889999998887776 2 23333323345565 7888999999999999999999999876

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.06  E-value=0.013  Score=50.27  Aligned_cols=155  Identities=12%  Similarity=0.005  Sum_probs=87.0

Q ss_pred             CEEEEeCCCCcEEEEecccCceeeEeeecCcc-----------------------------------EEEEEEeCCCCeE
Q 017194           29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-----------------------------------VTSLCFKSGNEDI   73 (375)
Q Consensus        29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------------------------------v~~l~~~~~~~~l   73 (375)
                      ..++.++.+|.+.++|..+|+.+...+.....                                   -...+++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            35778889999999999999976544321100                                   0123566666666


Q ss_pred             EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194           74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ  153 (375)
Q Consensus        74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  153 (375)
                      +....+....++.....+...................+. .+. -.....-|.+.-||+.+++.+-+.+  +..+...=.
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-p~~~~~~G~l~AiD~~tGk~~W~~~--~~~p~~gg~  483 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF-NAE-PPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGT  483 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE-CSS-CCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCE
T ss_pred             EeeccccceeeecccccccccCCCCcccccccccccccc-ccC-CCCCCCcccEEEeCCCCCceEeeec--CCCCCCCce
Confidence            665555544444443221111100000000000000110 000 0000112578899999999988776  222322222


Q ss_pred             EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194          154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG  188 (375)
Q Consensus       154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  188 (375)
                      ..-.+. ++++|+.||.++.+|.++|+.+.++..+
T Consensus       484 lstagg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         484 LTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEcCC-EEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            344565 7888999999999999999999999865

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.99  E-value=0.085  Score=45.07  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=57.4

Q ss_pred             CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194          169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS  248 (375)
Q Consensus       169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  248 (375)
                      |.|.-+|+.+++...+...+.|              +.+=.++.      .+.++++|+.||.++.+|.++++.+-+...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p--------------~~~g~lst------agglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP--------------LWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC--------------CCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCCC--------------CccceeEE------cCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            5788888888888888775521              11111112      477888899999999999999999988877


Q ss_pred             cCCCCCCceeecccccce
Q 017194          249 TTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       249 ~~~~~~~~~~~s~~g~~~  266 (375)
                      +.......+.+..+|++.
T Consensus       526 ~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         526 GSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SSCCCSCCEEEEETTEEE
T ss_pred             CCCccccCEEEEECCEEE
Confidence            766666667778888653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.90  E-value=0.0048  Score=52.97  Aligned_cols=204  Identities=11%  Similarity=0.048  Sum_probs=113.0

Q ss_pred             cEEEEecccCceeeEeeecC---------ccEEEEEEeCCC---CeEEEEcCCCeEEEEECCCCCcccccccccCC----
Q 017194           39 CICWFDLRSKDVQLVTDVGN---------GPVTSLCFKSGN---EDIIYVSSGKEVKSFDVHMPASWRPLESYNYN----  102 (375)
Q Consensus        39 ~i~iw~~~~~~~~~~~~~~~---------~~v~~l~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----  102 (375)
                      .|.-.|.++++.....+...         .+........++   ..++.++.+|.+.++|..+++...........    
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            46667777777665554321         111222222233   35677788899999999988754332211100    


Q ss_pred             ----------------------------CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc--cc-ceeE
Q 017194          103 ----------------------------KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH--SS-ICSS  151 (375)
Q Consensus       103 ----------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~-~v~~  151 (375)
                                                  ...-...+++|+...++....+....++.....+...... ..  .. ....
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~  442 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP-GKPQSGTGWNT  442 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT-TSTTGGGTCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCC-Ccccccccccc
Confidence                                        0011234677777777766666555555543322211111 10  00 0011


Q ss_pred             EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194          152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV  231 (375)
Q Consensus       152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~  231 (375)
                      ..+ +.+.  -.....-|.+.-||+.+++.+.+.+...            +..--.++.        .+.++++|+.||.
T Consensus       443 ~~~-~~~~--p~~~~~~G~l~AiD~~tGk~~W~~~~~~------------p~~gg~lst--------agglVF~G~~dg~  499 (573)
T d1kb0a2         443 AKF-FNAE--PPKSKPFGRLLAWDPVAQKAAWSVEHVS------------PWNGGTLTT--------AGNVVFQGTADGR  499 (573)
T ss_dssp             CEE-ECSS--CCCSCCEEEEEEEETTTTEEEEEEEESS------------SCCCCEEEE--------TTTEEEEECTTSE
T ss_pred             ccc-cccC--CCCCCCcccEEEeCCCCCceEeeecCCC------------CCCCceEEE--------cCCEEEEECCCCe
Confidence            111 0110  0011122679999999999998887552            111122333        4788889999999


Q ss_pred             EEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194          232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD  266 (375)
Q Consensus       232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  266 (375)
                      ++.+|.++++.+............-+.+..||++.
T Consensus       500 l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         500 LVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             EEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            99999999999987776655555556667778643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.25  E-value=0.22  Score=40.53  Aligned_cols=102  Identities=7%  Similarity=-0.031  Sum_probs=62.3

Q ss_pred             ccEEEEEEeCCCCeEEEEcC-C----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC---------
Q 017194           59 GPVTSLCFKSGNEDIIYVSS-G----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG---------  124 (375)
Q Consensus        59 ~~v~~l~~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  124 (375)
                      -.+...+++|++++++.+-. +    ..++++|+.+++.....  +.  ......++|.+|++.|+....+         
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--LE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--EE--EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--cc--cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            34456678999998885432 2    37999999987643311  11  1223578999999887754322         


Q ss_pred             -------CcEEEEeCcCcee--eeeEecCc--ccceeEEEEeeCCCcEEEEe
Q 017194          125 -------GDVKIIDIRQHCL--YKSLRAGH--SSICSSVQFIPWKPWEVISG  165 (375)
Q Consensus       125 -------g~i~iwd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~~l~~~  165 (375)
                             ..|..+.+.+...  ...+. ..  ...+..+..+++++++++..
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~-e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAE-FPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEEC-CTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccccCCcceEEEEECCCCccccccccc-cccCCceEEeeeccCCcceeeEEe
Confidence                   2577777765432  22333 22  23456677888888655443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.14  E-value=0.21  Score=39.16  Aligned_cols=197  Identities=10%  Similarity=0.119  Sum_probs=108.8

Q ss_pred             CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEc------CCCCeEEEEe-C-C--CcEEEEeCcC-ce
Q 017194           68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN------PKSSFLACAD-D-G--GDVKIIDIRQ-HC  136 (375)
Q Consensus        68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~-~-d--g~i~iwd~~~-~~  136 (375)
                      |+...++.....+-|++||++ ++.+..+.     .+.++.+..-      ....-+++++ . +  ..|.+|.+.. ..
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-----~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH-----TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC-----SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc-----cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            344556655556679999996 55544432     2455554432      2222355555 2 2  3577887752 22


Q ss_pred             eeeeEec------CcccceeEEEE--eeC-CCcEEEEeecCCeEEEeeCCC---C----CcceEEecCCCCCCCCCCccc
Q 017194          137 LYKSLRA------GHSSICSSVQF--IPW-KPWEVISGGLDSKLVMWDFSK---G----RPNKIVNFGLPENNGNAGQCY  200 (375)
Q Consensus       137 ~~~~~~~------~~~~~v~~~~~--~~~-~~~~l~~~~~d~~i~~wd~~~---~----~~~~~~~~~~~~~~~~~~~~~  200 (375)
                      .+..+..      .-...+..+|+  ++. +..++++...+|.+..|.+..   +    +.++.+..             
T Consensus       112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-------------  178 (353)
T d1h6la_         112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-------------  178 (353)
T ss_dssp             EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-------------
T ss_pred             ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-------------
Confidence            2232220      11224677777  554 333466677889998887632   2    23344443             


Q ss_pred             CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194          201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL  280 (375)
Q Consensus       201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~  280 (375)
                       +..+..+.+.+      ....|+++-++.-|..++......                                   ...
T Consensus       179 -~~q~EGCVvDd------e~~~LyisEE~~Giw~~~a~~~~~-----------------------------------~~~  216 (353)
T d1h6la_         179 -NSQTEGMAADD------EYGSLYIAEEDEAIWKFSAEPDGG-----------------------------------SNG  216 (353)
T ss_dssp             -SSCEEEEEEET------TTTEEEEEETTTEEEEEESSTTSC-----------------------------------SCC
T ss_pred             -CCccceEEEeC------CCCcEEEecCccceEEEEeccCCC-----------------------------------ccc
Confidence             35778888877      678888888887676666542100                                   000


Q ss_pred             Eeeeeec--CCCccEEEEEEeecC-CCCcEEEEecCCCeEEEEeCCCc
Q 017194          281 HLDYSVG--GHTAAASCVAFSMFG-ERGKYLISGGNDKLVKVWDCSRF  325 (375)
Q Consensus       281 ~~~~~~~--~~~~~v~~~~~s~~~-~~~~~l~s~~~dg~i~iwd~~~~  325 (375)
                      ..+....  .....+..|++-... .+|-+|+|.-.+++..|||....
T Consensus       217 ~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         217 TVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             eeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            1111111  124567777664211 13445555556899999998774

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.03  E-value=0.24  Score=38.84  Aligned_cols=197  Identities=9%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC----C--CCeEEEEcC-C---CeEEEEECCCC-Cccccc
Q 017194           28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS----G--NEDIIYVSS-G---KEVKSFDVHMP-ASWRPL   96 (375)
Q Consensus        28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~----~--~~~l~~~~~-d---~~i~iwd~~~~-~~~~~~   96 (375)
                      ..+++...+++-|.+||++ |+.++.+.  .+.++.+..-.    .  ...+++++. +   .+|.+|.+... .....+
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            4566666666669999986 77777765  35666665432    2  223555552 2   36888877521 111111


Q ss_pred             cccc----CCCcceeEEEE--cCC-CC-eEEEEeCCCcEEEEeCc---Cc----eeeeeEecCcccceeEEEEeeCCCcE
Q 017194           97 ESYN----YNKEEINQIVC--NPK-SS-FLACADDGGDVKIIDIR---QH----CLYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        97 ~~~~----~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ....    .....+..+|+  ++. +. ++++...+|.+..|.+.   .+    +.++.+.  -...+..+.+.+... .
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvDde~~-~  193 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAADDEYG-S  193 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEETTTT-E
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEeCCCC-c
Confidence            1110    01234667776  554 44 46667788999888764   22    4455665  456789999999887 6


Q ss_pred             EEEeecCCeEEEeeCCC--CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          162 VISGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      |+.+-++.-+..++..-  ......+....       .. .....+..|++-...  +.+|-++++.-.+++..+||..+
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~-------g~-~l~~D~EGlaiy~~~--~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-------GR-HLTPDIEGLTIYYAA--DGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECS-------SS-SCCSCEEEEEEEECG--GGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEecCccceEEEEeccCCCccceeeeccc-------Cc-cccCCccccEEEEcC--CCCeEEEEEcCCCCeEEEEecCC
Confidence            88888887777666542  22222221110       00 012355666654310  11344455555778999999986


Q ss_pred             c
Q 017194          240 E  240 (375)
Q Consensus       240 ~  240 (375)
                      .
T Consensus       264 ~  264 (353)
T d1h6la_         264 Q  264 (353)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.44  E-value=0.26  Score=35.02  Aligned_cols=109  Identities=11%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC--CeEEEE-e-----CCCcEEEEeCcCceeeee
Q 017194           69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACA-D-----DGGDVKIIDIRQHCLYKS  140 (375)
Q Consensus        69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~-----~dg~i~iwd~~~~~~~~~  140 (375)
                      +.+.++.+...|.+.++-+..++..+..      ..+|..... |..  .++... .     +-..|++-++...-.-..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt------kePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~   97 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN------REPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR   97 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC------SSCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe------cccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE
Confidence            4457777778899988888765443322      234433221 211  122111 1     112344444432111122


Q ss_pred             EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194          141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN  186 (375)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  186 (375)
                      +.  ...+++-+...-+++...++|+......+|-++.|+..+-..
T Consensus        98 i~--spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~  141 (313)
T d2hu7a1          98 LE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR  141 (313)
T ss_dssp             CT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred             ec--CCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeecc
Confidence            22  222344444444555588899988889999998877655444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.44  Score=35.88  Aligned_cols=54  Identities=7%  Similarity=0.147  Sum_probs=28.1

Q ss_pred             CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC---------CCcEEEEeCcCce
Q 017194           80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD---------GGDVKIIDIRQHC  136 (375)
Q Consensus        80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~  136 (375)
                      ..+.+||+++++ +..+..+......-..+.+  +++.++.|+.         -..+.+||..+.+
T Consensus        19 ~~~~~yd~~t~~-W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~   81 (288)
T d1zgka1          19 SYLEAYNPSNGT-WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ   81 (288)
T ss_dssp             CCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             ceEEEEECCCCe-EEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccc
Confidence            368899998753 4444433321212122222  4555665542         2357788876553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.5  Score=35.58  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=17.3

Q ss_pred             CCCcEEEEecCCC-----eEEEEeCCCce
Q 017194          303 ERGKYLISGGNDK-----LVKVWDCSRFQ  326 (375)
Q Consensus       303 ~~~~~l~s~~~dg-----~i~iwd~~~~~  326 (375)
                      .++++++.|+.++     .|.+||+.+.+
T Consensus       241 ~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         241 HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            3678888877654     37889988864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.90  E-value=0.74  Score=37.26  Aligned_cols=101  Identities=7%  Similarity=0.042  Sum_probs=63.2

Q ss_pred             eeEEEEecCCCCEEEEe----C-CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC-------------
Q 017194           18 ATCCIASRDRPGFVASS----G-EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-------------   79 (375)
Q Consensus        18 i~~~~~~~~~~~~l~s~----~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------------   79 (375)
                      +..+.++|+ ++++|.+    | ....|+++|+.+++.+...- .......++|.++++.|+....+             
T Consensus       127 ~~~~~~Spd-~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCC-CCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            445678998 7777733    2 23479999999998754221 12223568899999988765432             


Q ss_pred             ---CeEEEEECCCCCcccccccccC--CCcceeEEEEcCCCCeEEEE
Q 017194           80 ---KEVKSFDVHMPASWRPLESYNY--NKEEINQIVCNPKSSFLACA  121 (375)
Q Consensus        80 ---~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  121 (375)
                         ..+..+.+.++.... ...+..  ....+..+..++++++++..
T Consensus       205 ~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEE
Confidence               268888887653321 122222  12345667789999987654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.77  Score=36.26  Aligned_cols=139  Identities=12%  Similarity=0.123  Sum_probs=79.9

Q ss_pred             CceeEEEEecCCCCEEEEeCCCCcEEEEecccC---------ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194           16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSK---------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD   86 (375)
Q Consensus        16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd   86 (375)
                      ...+-++.++. ..+++.|+.++ ++|..++.-         ......+..-..|..++|+.+  .|+.. .++.+..++
T Consensus        37 ~~~~LLAVsn~-~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          37 ASLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             SCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             cccceEEEeCC-CCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            34667888887 56777777764 667664311         111111112236889999754  45444 456788888


Q ss_pred             CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec----CcccceeEEEEeeCCCcEE
Q 017194           87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA----GHSSICSSVQFIPWKPWEV  162 (375)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l  162 (375)
                      ...-........+   ..++..+.++|.  .++....++.+.++++..++.......    .-...+.+++|++.+. .+
T Consensus       112 ~~~l~~~~~~~~~---~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk-q~  185 (381)
T d1xipa_         112 LEELSEFRTVTSF---EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF-QS  185 (381)
T ss_dssp             SSSTTCEEEEEEC---SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE-EE
T ss_pred             eeccccccccccc---cccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE-EE
Confidence            7653322222222   456777887775  566667789999999987754322210    0123455666666555 34


Q ss_pred             EEe
Q 017194          163 ISG  165 (375)
Q Consensus       163 ~~~  165 (375)
                      +++
T Consensus       186 v~~  188 (381)
T d1xipa_         186 FAW  188 (381)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.05  E-value=0.99  Score=35.13  Aligned_cols=157  Identities=11%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             EEEEeCCCCeEEEEcC------------CCeEEEEECCCCCcccccccccCC-----CcceeEEEE--cCCCCe-EEEEe
Q 017194           63 SLCFKSGNEDIIYVSS------------GKEVKSFDVHMPASWRPLESYNYN-----KEEINQIVC--NPKSSF-LACAD  122 (375)
Q Consensus        63 ~l~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~--~~~~~~-l~~~~  122 (375)
                      .+...|+|..+++++.            .|.|.++|+++.+.......+.+.     .-....+.+  .++++. |++..
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            4566666665555431            388999998764322111111100     001122322  445653 44443


Q ss_pred             ---CCCcEEEEeCcCce--e--eeeEecCcccceeEEEEeeCCCcEEEEeec---------------CCeEEEeeCCCCC
Q 017194          123 ---DGGDVKIIDIRQHC--L--YKSLRAGHSSICSSVQFIPWKPWEVISGGL---------------DSKLVMWDFSKGR  180 (375)
Q Consensus       123 ---~dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------d~~i~~wd~~~~~  180 (375)
                         ...+|.+|++....  .  +..+........++++...++. +++|-..               -+...+|..+.++
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence               35678888876332  1  2233312234578999999887 6777311               1223333333333


Q ss_pred             cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCc
Q 017194          181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESE  240 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  240 (375)
                      ...... +             -...+.|+++|      ++++|+++. ..+.|+.|++...
T Consensus       198 ~~~~~~-~-------------l~~pNGI~~s~------d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         198 VRVVAE-G-------------FDFANGINISP------DGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEEE-E-------------ESSEEEEEECT------TSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eEEEcC-C-------------CCccceeEECC------CCCEEEEEeCCCCeEEEEEeCCC
Confidence            222222 1             25678999998      777766654 6788999998753

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.69  E-value=4.5  Score=31.76  Aligned_cols=108  Identities=9%  Similarity=0.043  Sum_probs=66.0

Q ss_pred             cceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----------ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194          104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----------HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV  172 (375)
Q Consensus       104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  172 (375)
                      ....-++.++...++++|+.++ +.|..++.           ........   -..|..++|+.+   .++.. .++.+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~---ip~v~~vafs~d---~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE---IPDVIFVCFHGD---QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE---CTTEEEEEEETT---EEEEE-ESSEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC---CCCeEEEEeeCC---EEEEE-eCCCEE
Confidence            4566788888777888887775 66766431           11111111   235788888754   34443 456788


Q ss_pred             EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194          173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE  240 (375)
Q Consensus       173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  240 (375)
                      .++...-.........             ...+..+...|        ..++....+|.+.++++...
T Consensus       109 ~~~~~~l~~~~~~~~~-------------~~~~~~~~~~p--------~~~~l~~~~~~~~~~~l~~~  155 (381)
T d1xipa_         109 SLDLEELSEFRTVTSF-------------EKPVFQLKNVN--------NTLVILNSVNDLSALDLRTK  155 (381)
T ss_dssp             EEESSSTTCEEEEEEC-------------SSCEEEEEECS--------SEEEEEETTSEEEEEETTTC
T ss_pred             EEEeeccccccccccc-------------cccccceecCC--------ceeEEEecCCCEEEEEeccC
Confidence            8887764444333211             24567777765        35566667888999998864

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.25  E-value=5.4  Score=32.19  Aligned_cols=61  Identities=8%  Similarity=0.005  Sum_probs=38.9

Q ss_pred             cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194          147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA  213 (375)
Q Consensus       147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  213 (375)
                      ...++|+|.|+++ +|++--..|.|++++..+++........  ...   ...........|+++|.
T Consensus        27 ~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~--~~~---~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVP--EIV---NDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT--TCC---CCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCC--ccc---cccCCCCceeeEEeCCC
Confidence            4668999999997 5665545799999998776654433321  100   00112356788999983

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.10  E-value=4.4  Score=30.99  Aligned_cols=151  Identities=9%  Similarity=0.018  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCCCeEEEEECCCCCc--ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeC---cC------ce
Q 017194           68 SGNEDIIYVSSGKEVKSFDVHMPAS--WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI---RQ------HC  136 (375)
Q Consensus        68 ~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~---~~------~~  136 (375)
                      |+.+.+++.+.+|.|+--.+.+-+.  ..... +.. ...+..+........|+.-+..|.++...+   ..      |.
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~-~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~   80 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFA-MKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCC-CCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCc-ccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccc
Confidence            5667788888899888665432100  01111 111 334544444444445555567787665543   21      33


Q ss_pred             eeeeEe-cCcccceeEEEEeeC---CCcEEEEeecCCeEEEeeCCCCC------cceEEecCCCCCCCCCCcccCCCcee
Q 017194          137 LYKSLR-AGHSSICSSVQFIPW---KPWEVISGGLDSKLVMWDFSKGR------PNKIVNFGLPENNGNAGQCYNPAFVH  206 (375)
Q Consensus       137 ~~~~~~-~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~  206 (375)
                      .+..+- ......+..+...++   .. .|+..+..|.++..++..-.      ....+.+.            ....+.
T Consensus        81 pi~~ll~l~~~e~ii~~~~~~~~~~~~-~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~------------~~D~l~  147 (323)
T d1wp5a_          81 HIANIIPIDRDEEIIKAIPINDFELNG-YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK------------NDDQVV  147 (323)
T ss_dssp             EGGGTSCCCTTCCEEEEEEESCTTSSC-EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC------------TTCCEE
T ss_pred             cceeeecccCCcceEEEeeccccccce-eEEEEeehhheeeccHHHhhhhhccchhhhcccc------------cccccc
Confidence            333221 012334443333222   33 68888999999998875321      12222222            245566


Q ss_pred             EEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194          207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIES  239 (375)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  239 (375)
                      .+.+..      +...++.++..|.+..|+...
T Consensus       148 ~v~~~~------~~~~i~l~t~~G~~lrf~~~~  174 (323)
T d1wp5a_         148 DVHLTD------GMNELFLVTHNGYALWFDESE  174 (323)
T ss_dssp             EEEEEC------SCSEEEEEETTSEEEEEEGGG
T ss_pred             ceeccC------CCeEEEEEEecceeeEeeccc
Confidence            666655      467788889999999998764

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.56  E-value=7.7  Score=29.57  Aligned_cols=193  Identities=12%  Similarity=0.126  Sum_probs=106.9

Q ss_pred             cCCCCEEEEeCCCCcEEEEecccCc----eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE---EECCCCCc---cc
Q 017194           25 RDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS---FDVHMPAS---WR   94 (375)
Q Consensus        25 ~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i---wd~~~~~~---~~   94 (375)
                      |+ ...+++-+.+|.|+--.+.+.+    .-..+. ..+.+..+........|+.-+..|.++.   |++...+.   ..
T Consensus         3 ~~-E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~   80 (323)
T d1wp5a_           3 AS-EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             SC-CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             CC-CCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccc
Confidence            44 5788888999999876654311    011122 2445555555445556666666776544   44442211   12


Q ss_pred             cccc---ccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCcCce--------eeeeEecCcccceeEEEEeeCCCcE
Q 017194           95 PLES---YNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHC--------LYKSLRAGHSSICSSVQFIPWKPWE  161 (375)
Q Consensus        95 ~~~~---~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~  161 (375)
                      ++..   +......+..+...+  ...+|+..+..|.++..++....        ....+.  ....+..+....... .
T Consensus        81 pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~--~~D~l~~v~~~~~~~-~  157 (323)
T d1wp5a_          81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK--NDDQVVDVHLTDGMN-E  157 (323)
T ss_dssp             EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC--TTCCEEEEEEECSCS-E
T ss_pred             cceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc--ccccccceeccCCCe-E
Confidence            2221   222122333333333  35688888999999999875321        112233  445667777766656 6


Q ss_pred             EEEeecCCeEEEeeCCCCCcc-------eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194          162 VISGGLDSKLVMWDFSKGRPN-------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV  234 (375)
Q Consensus       162 l~~~~~d~~i~~wd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  234 (375)
                      ++.++..|.+..++...-...       .-+++.            ....+-+..+.+.     ++..++..+..|..+.
T Consensus       158 i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~------------~~D~vv~~~~~~~-----~~~~ll~~T~~G~gKr  220 (323)
T d1wp5a_         158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK------------EGDYIVSGQLITS-----KDESIVVATQRGAVKK  220 (323)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC------------TTCCEEEEEEECC-----TTCEEEEEETTSEEEE
T ss_pred             EEEEEecceeeEeecccccccCcccccccccccc------------cccccchhhhccc-----cccceeeeeeeheeec
Confidence            888899999999987643221       112211            2234444333221     4667788888888777


Q ss_pred             EeCCC
Q 017194          235 INIES  239 (375)
Q Consensus       235 ~d~~~  239 (375)
                      ..+..
T Consensus       221 ~~~~e  225 (323)
T d1wp5a_         221 MKLTE  225 (323)
T ss_dssp             EEGGG
T ss_pred             ccchh
Confidence            66543

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=81.41  E-value=11  Score=29.83  Aligned_cols=27  Identities=11%  Similarity=0.112  Sum_probs=20.7

Q ss_pred             CCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194          202 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVD  233 (375)
Q Consensus       202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~  233 (375)
                      ...+.+|+++|.     +..++.++...|-|.
T Consensus        11 gg~~~~i~~~P~-----~~~~~ya~~~~gGv~   37 (427)
T d2ebsa1          11 GGYITGIVAHPK-----TKDLLYARTDIGGAY   37 (427)
T ss_dssp             CSCEEEEEECSS-----STTCEEEEESSSCEE
T ss_pred             CCcEEEEEECCC-----CCCEEEEEecCCCEE
Confidence            467999999996     677888887766553