Citrus Sinensis ID: 017198

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
cEEEEcccEEEEEEcccEEEEEccccccccccccccEEEcEEEEcccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEccEEEcccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccEEEEccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEccccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccEEccEEccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccEEEc
cEEEEccEEEEEEEccEEEEEEcccccccccccccccccccEEEHccccccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHHcccEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEHHccccEEEEEc
mqittgryhtllisnssvfscgsslcgvlghgpettqcvsftrinfpsaaHVVQVSASENHAAFVlqsgqvftcgdnssfccghrdtnrpifrPRLVEalkgvpckqvtaglnFTGFLTIRGHvhtcgsnthgqlghgdtldrptpksiapleevgsvvqiaagpSYMLAVTGNgvvysfgsgsnfclghgeqhdelqPRAIQTFRRKGIHVVRVSAGDEHVVALdssgyvytwgkgycgalghgdeidktlpeplsslksHLAVQVCARKRKTfvlvdtgsvygfgwmgfgslgfpdrgvsdkvlrpRILDSLRAHHVSQISTGLYHTVvvtdrgrlfgfgdneraqlghdtlrgclepTEIFIQEMEEDTGLA
MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVrvsagdehvvaLDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAhhvsqistglyhtvVVTDRGRLFGFGDneraqlghdtlrgcLEPTEIFIQEMEEDTGLA
MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
*****GRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQL***************PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI**********
MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.906 0.772 0.32 1e-37
Q15034 1050 Probable E3 ubiquitin-pro yes no 0.725 0.259 0.318 8e-30
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.709 0.251 0.329 4e-29
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.709 0.251 0.329 4e-29
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.832 0.064 0.292 5e-29
O95714 4834 E3 ubiquitin-protein liga no no 0.832 0.064 0.292 1e-28
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.709 0.251 0.329 1e-28
Q15751 4861 Probable E3 ubiquitin-pro no no 0.858 0.066 0.303 5e-28
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.904 0.069 0.291 7e-27
F2Z461 1003 E3 ISG15--protein ligase no no 0.677 0.253 0.311 2e-25
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)

Query: 3   ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 20  ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 78

Query: 62  AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 79  TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 196

Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 197 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 254

Query: 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
            LGHGD  D  +P  L +L +    Q+    R T  L   G +YG+GW  FG +G  +  
Sbjct: 255 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 314

Query: 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 350
                ++ R  D  +   V Q+S G  HT+ VT+R  +F +G     QLG
Sbjct: 315 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 361
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
255575340 497 Ran GTPase binding protein, putative [Ri 0.997 0.752 0.860 0.0
225461391 492 PREDICTED: probable E3 ubiquitin-protein 0.994 0.758 0.836 0.0
224114984 478 predicted protein [Populus trichocarpa] 0.973 0.763 0.854 0.0
147820281 511 hypothetical protein VITISV_023540 [Viti 0.989 0.726 0.832 0.0
224128193 492 predicted protein [Populus trichocarpa] 0.997 0.760 0.828 0.0
356549747 485 PREDICTED: probable E3 ubiquitin-protein 0.981 0.758 0.827 0.0
255646519 485 unknown [Glycine max] 0.981 0.758 0.819 1e-178
449446943 491 PREDICTED: probable E3 ubiquitin-protein 0.992 0.757 0.803 1e-178
356544020 485 PREDICTED: probable E3 ubiquitin-protein 0.981 0.758 0.816 1e-178
18400769 488 regulator of chromosome condensation rep 0.973 0.747 0.778 1e-168
>gi|255575340|ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223532017|gb|EEF33828.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/374 (86%), Positives = 347/374 (92%)

Query: 1   MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 60
           MQITTGRYHTLLISNSSV+SCGSSLCGVLGHGPETTQCVSF+RI FPS A VVQVSAS N
Sbjct: 114 MQITTGRYHTLLISNSSVYSCGSSLCGVLGHGPETTQCVSFSRITFPSLARVVQVSASHN 173

Query: 61  HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
           HAA++L+SG+VFTCGDNSSFCCGH+DT+RPIFRPR VEALKGVPCKQV AGLNFT FLT 
Sbjct: 174 HAAYILESGEVFTCGDNSSFCCGHQDTSRPIFRPRFVEALKGVPCKQVAAGLNFTVFLTR 233

Query: 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
            GHV++CG+NTHGQLGHGDTLDRPTPK I   E +GSV QIAAGPSY+LAVT +GVVYSF
Sbjct: 234 TGHVYSCGTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPSYVLAVTDSGVVYSF 293

Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
           GSGSNFCLGHGEQH+E  PRAIQTFRRK +HVVRVSAGDEHVVALDSSG+VYTWGKGYCG
Sbjct: 294 GSGSNFCLGHGEQHNEFHPRAIQTFRRKNLHVVRVSAGDEHVVALDSSGFVYTWGKGYCG 353

Query: 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
           ALGHGDEIDKTLPEPL+SLKSHLAVQVCARKRKTFVLVD G V+GFGWMGFGSLGFPDRG
Sbjct: 354 ALGHGDEIDKTLPEPLNSLKSHLAVQVCARKRKTFVLVDGGCVFGFGWMGFGSLGFPDRG 413

Query: 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEP 360
           VSDKV+RPRILDSLRAH VSQISTGLYHTV VT +G++FGFGDNERAQLGHDTLRGCLEP
Sbjct: 414 VSDKVMRPRILDSLRAHRVSQISTGLYHTVAVTSQGQVFGFGDNERAQLGHDTLRGCLEP 473

Query: 361 TEIFIQEMEEDTGL 374
           TEIF+QE   DTG+
Sbjct: 474 TEIFLQEFGHDTGI 487

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461391|ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|302143037|emb|CBI20332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114984|ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820281|emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128193|ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|222869773|gb|EEF06904.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549747|ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|255646519|gb|ACU23737.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449446943|ref|XP_004141229.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356544020|ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|18400769|ref|NP_566512.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|42572455|ref|NP_974323.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|7021728|gb|AAF35409.1| unknown protein [Arabidopsis thaliana] gi|15795108|dbj|BAB02372.1| unnamed protein product [Arabidopsis thaliana] gi|23297250|gb|AAN12924.1| unknown protein [Arabidopsis thaliana] gi|332642152|gb|AEE75673.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|332642153|gb|AEE75674.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.973 0.747 0.778 8.6e-159
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 0.917 0.646 0.351 1.1e-41
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.906 0.772 0.32 2.6e-40
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.832 0.064 0.289 6.8e-31
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.832 0.064 0.289 6.8e-31
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.832 0.064 0.292 1.1e-30
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.832 0.064 0.292 1.1e-30
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.832 0.065 0.292 6.7e-31
TAIR|locus:2165770 1073 AT5G42140 "AT5G42140" [Arabido 0.808 0.282 0.311 7.2e-35
UNIPROTKB|G3MX12 4757 HERC2 "Uncharacterized protein 0.832 0.065 0.292 1.1e-30
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
 Identities = 284/365 (77%), Positives = 318/365 (87%)

Query:     1 MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 60
             MQI TG+YHTLLI+NS V+SCG SL GVL HG ETTQCV+FT I FP  A V QVSA++N
Sbjct:   114 MQIATGKYHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQN 173

Query:    61 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
             H+AFVLQSGQV TCGDNSS CCGH DT+RPIFRP+LVEALKG PCKQV AGL+FT FL+ 
Sbjct:   174 HSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSR 233

Query:   121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
              GH +TCGSNTHGQLGHGDTLDRP PK +  L+ +G VVQIAAGPSY+LAVT +G VYSF
Sbjct:   234 EGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSF 293

Query:   181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
             GSGSNFCLGHGEQ DELQPR IQ F+RKGIH++RVSAGDEH VALDS+G VYTWGKGYCG
Sbjct:   294 GSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCG 353

Query:   241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
             ALGHGDE DK  P+ L +L + LAVQVCARKRKTFVLV+ G +YGFGWMGFGSLGFPDRG
Sbjct:   354 ALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRG 413

Query:   301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEP 360
             VSDKVLRPR+L+ L+ H VSQ+STGLYHT+VVT RGR+FGFGDNERAQLGHD+LRGCLEP
Sbjct:   414 VSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEP 473

Query:   361 TEIFI 365
             TEIF+
Sbjct:   474 TEIFL 478
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX12 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027640001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (492 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-25
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-23
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-20
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-19
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-18
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-08
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.003
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  109 bits (274), Expect = 2e-26
 Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 49/385 (12%)

Query: 3   ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF--PSAAHVVQVSASEN 60
           I    +  LL+  +SV+S GS+    LG G + T+        F     A +++++   N
Sbjct: 57  INKHTH--LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGN 114

Query: 61  HAAFVLQSGQVFTCGDNSSFCCG---HRDTN----------------RPIFRPRLVEALK 101
           H+  +   G +++ GDN     G   H+D                   P   P    A  
Sbjct: 115 HSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKS 174

Query: 102 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG--SVV 159
            +   ++  G   +  LT  G V++ G+   G+LG G   +           +V   ++V
Sbjct: 175 HLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIV 234

Query: 160 QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG--------IH 211
           Q+AAG  +++A+T  G VY +GS          Q  +L     +  +            +
Sbjct: 235 QLAAGADHLIALTNEGKVYGWGSN---------QKGQLGRPTSERLKLVVLVGDPFAIRN 285

Query: 212 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHG----DEIDKTLPEPLSSLKSHLAVQV 267
           +  V+ G +H +ALD  G +Y WG    G LG G         T P     L       +
Sbjct: 286 IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSI 345

Query: 268 CARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY 327
            A +  + +L   G++Y FG    G LG  +    D            A  + Q++ G +
Sbjct: 346 SAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITID---VSTPTKLSVAIKLEQVACGTH 402

Query: 328 HTVVVTDRGRLFGFGDNERAQLGHD 352
           H +  TD G ++ +G  E   LG+ 
Sbjct: 403 HNIARTDDGSVYSWGWGEHGNLGNG 427

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.88
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.29
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.26
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.25
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.15
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.92
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.91
KOG3669 705 consensus Uncharacterized conserved protein, conta 96.23
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 96.08
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.77
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 91.64
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 91.46
KOG0646 476 consensus WD40 repeat protein [General function pr 91.24
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 90.79
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.61
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 89.04
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 88.1
KOG0315311 consensus G-protein beta subunit-like protein (con 87.81
KOG0293519 consensus WD40 repeat-containing protein [Function 87.46
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 86.91
PHA02713557 hypothetical protein; Provisional 86.3
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 86.04
KOG0315311 consensus G-protein beta subunit-like protein (con 85.67
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 85.56
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 85.06
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 83.77
KOG0646476 consensus WD40 repeat protein [General function pr 83.57
PLN02153341 epithiospecifier protein 82.64
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 82.24
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 81.5
PRK05560805 DNA gyrase subunit A; Validated 81.16
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-54  Score=383.86  Aligned_cols=354  Identities=25%  Similarity=0.361  Sum_probs=288.6

Q ss_pred             CeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCC--CCCCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccC
Q 017198            8 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGH   84 (375)
Q Consensus         8 ~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~--~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~   84 (375)
                      .|...+ .-..||+||+|..++||++..+.....|+...+.  ....|++++||..|+++|++||+||+||.|..|+||.
T Consensus        59 ~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr  138 (476)
T COG5184          59 KHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGR  138 (476)
T ss_pred             cchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccc
Confidence            455566 7788999999999999999888866778877766  4459999999999999999999999999999999997


Q ss_pred             CC---------------CCCceecCEEccc----cCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCc
Q 017198           85 RD---------------TNRPIFRPRLVEA----LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT  145 (375)
Q Consensus        85 ~~---------------~~~~~~~p~~i~~----~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~  145 (375)
                      ..               ......+|..+..    ....+++++.||++++++++++|+||+||....+.++.+.......
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k  218 (476)
T COG5184         139 DIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK  218 (476)
T ss_pred             ccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccccc
Confidence            76               2123566766655    2234799999999999999999999999998888887774433322


Q ss_pred             ----ceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCe
Q 017198          146 ----PKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH  221 (375)
Q Consensus       146 ----p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~  221 (375)
                          ++++...  ...|+++++|.+|.++|+++|++|.||.|..||||.........+..+..+. .-..|..|+||.+|
T Consensus       219 ~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG~~h  295 (476)
T COG5184         219 TSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACGKDH  295 (476)
T ss_pred             ceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccCcce
Confidence                3333322  2689999999999999999999999999999999998887777666665432 12247889999999


Q ss_pred             EEEEeCCCCEEEEeCCCCCCCCCCCCC----CcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCC
Q 017198          222 VVALDSSGYVYTWGKGYCGALGHGDEI----DKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFP  297 (375)
Q Consensus       222 ~~~lt~~g~v~~~G~n~~gqlg~~~~~----~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~  297 (375)
                      +++|+++|++|+||.|.+|||+.+...    ....|.....+....|..|++|..|+++|..+|.||.||.+..+|||..
T Consensus       296 ~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~  375 (476)
T COG5184         296 SLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQ  375 (476)
T ss_pred             EEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCc
Confidence            999999999999999999999998221    1234455555566679999999999999999999999999999999998


Q ss_pred             CCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCC-CCCcccceEEEecc
Q 017198          298 DRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGCLEPTEIFIQE  367 (375)
Q Consensus       298 ~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~-~~~~~~p~~v~~~~  367 (375)
                      ... .....+|.++...  ..+.+++||.+|+++.+++|+||+||++++||||.|. .+.+..|+.++.+.
T Consensus       376 ~~~-~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~  443 (476)
T COG5184         376 EEI-TIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPL  443 (476)
T ss_pred             ccc-eeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccc
Confidence            644 3334555555533  3799999999999999999999999999999999985 67888999888543

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PRK05560 DNA gyrase subunit A; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-39
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 8e-30
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-16
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 8e-39
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 9e-30
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-16
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-38
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 9e-30
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-16
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-38
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 3e-29
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 9e-17
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-28
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 8e-22
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 5e-15
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 6e-13
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-15
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 5e-13
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-13
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-05
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 1e-10
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 1e-07
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (398), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 3   ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 9   ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 62  AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 68  TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
            LGHGD  D  +P  L +L +    Q+    R T  L   G +YG+GW  FG +G  +  
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 350
                ++ R  D  +   V Q+S G  HT+ VT+R  +F +G     QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-107
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-85
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-84
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-72
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-33
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-105
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-84
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-74
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-56
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-52
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-38
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-86
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-76
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-73
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-81
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-71
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-67
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-45
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-14
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-68
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-67
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-43
3of7_A 473 Regulator of chromosome condensation; beta-propell 8e-22
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-29
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-29
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  318 bits (816), Expect = e-107
 Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 9/365 (2%)

Query: 2   QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 60
              +     L    + +++  G +  G LG   E  +    T     +    VQ+   E 
Sbjct: 5   HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGI-EGAKVKVPTPCEALATLRPVQLIGGEQ 63

Query: 61  HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFL 118
               V   G+++  G  +    G   T   +  P L+E+++ V  K+V   +G      L
Sbjct: 64  TLFAVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122

Query: 119 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVY 178
           +  G V++ G    G+LGHG+      P+ I  L  +  VV +AAG ++   VT  G +Y
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLY 181

Query: 179 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 238
           ++G G    LGH +  D+L+P+ ++  +   +  +   +GD   + L     V++WG G 
Sbjct: 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241

Query: 239 CGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPD 298
            G LG G      +P  + SL     V+V    + +  L  +G+VY +G   +  LG   
Sbjct: 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS 301

Query: 299 RGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCL 358
               D V RPR +  L+   V  I+TG  H V  T+ G ++ +GDN+  QLG  T     
Sbjct: 302 ---DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQ 358

Query: 359 EPTEI 363
            P  +
Sbjct: 359 RPRLV 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.19
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.79
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.77
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.42
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.39
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 96.1
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 95.86
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 95.67
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 95.42
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.0
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 94.83
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.7
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 94.62
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.42
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 93.99
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 93.42
3jrp_A379 Fusion protein of protein transport protein SEC13 93.23
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 92.93
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 92.85
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 91.83
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 91.8
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 91.75
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 91.65
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 91.23
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 90.99
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 90.46
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 90.4
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 89.24
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 89.24
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 88.9
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 88.65
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 88.64
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 88.61
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 88.4
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 88.05
3jrp_A379 Fusion protein of protein transport protein SEC13 87.36
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 87.32
4g56_B357 MGC81050 protein; protein arginine methyltransfera 87.27
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 86.82
4g56_B357 MGC81050 protein; protein arginine methyltransfera 86.76
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 86.62
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 86.11
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 85.52
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 85.29
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 85.2
1wp5_A323 Topoisomerase IV; broken beta-propeller, hairpin-i 85.15
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 85.05
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 84.18
2xyi_A430 Probable histone-binding protein CAF1; transcripti 84.14
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 84.09
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 83.79
3jro_A 753 Fusion protein of protein transport protein SEC13 83.54
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 82.91
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 82.91
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 82.56
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 82.37
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 81.9
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 81.69
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 81.08
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 80.59
3l6v_A370 GYRA, DNA gyrase subunit A; gyrase A C-terminal do 80.45
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 80.39
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 80.16
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=3.7e-75  Score=544.89  Aligned_cols=357  Identities=31%  Similarity=0.490  Sum_probs=329.0

Q ss_pred             CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCC-cEEEeeCCC
Q 017198            1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG-QVFTCGDNS   78 (375)
Q Consensus         1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g-~vy~~G~n~   78 (375)
                      ++|+||..|+++| ++++||+||.|.+||||.+.... ...|+++......+|++|+||..|+++|++++ +||+||.|.
T Consensus        19 ~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~   97 (406)
T 4d9s_A           19 LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGD   97 (406)
T ss_dssp             EEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCG
T ss_pred             EEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCC
Confidence            4799999999999 99999999999999999998877 56677776666669999999999999999986 999999999


Q ss_pred             CCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCE
Q 017198           79 SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV  158 (375)
Q Consensus        79 ~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i  158 (375)
                      +||||.+... ....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|..+..+.. .+|
T Consensus        98 ~GqLG~g~~~-~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~i  175 (406)
T 4d9s_A           98 FGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG-IRI  175 (406)
T ss_dssp             GGTTCSSSCC-CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT-CCE
T ss_pred             CcCCCCCCCC-ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC-CcE
Confidence            9999998874 47889999999999999999999999999999999999999999999998888888988887754 689


Q ss_pred             EEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCC
Q 017198          159 VQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY  238 (375)
Q Consensus       159 ~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~  238 (375)
                      ++|+||.+|+++|+++|+||+||.|.++|||.+.......|+++..+.  ..+|++|+||.+|+++|+++|+||+||.|.
T Consensus       176 ~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~v~~wG~n~  253 (406)
T 4d9s_A          176 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGWSK  253 (406)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred             EEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCCEEEeeCCC
Confidence            999999999999999999999999999999999988888898887653  348999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCc
Q 017198          239 CGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHH  318 (375)
Q Consensus       239 ~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~  318 (375)
                      +||||.++......|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.   ......|.+++.+...+
T Consensus       254 ~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~v~~~~~~~  330 (406)
T 4d9s_A          254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN---NLDQCSPVQVRFPDDQK  330 (406)
T ss_dssp             TSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS---SSCEEEEEEECCGGGCC
T ss_pred             CCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC---CCCCccCEEEeccCCCc
Confidence            999999999999999999998888999999999999999999999999999999999886   44567788888777789


Q ss_pred             EEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccceEEEe
Q 017198          319 VSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI  365 (375)
Q Consensus       319 i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~  365 (375)
                      |++|+||.+|+++|+++|+||+||+|.+||||+|+..+...|+.|..
T Consensus       331 v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~  377 (406)
T 4d9s_A          331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEA  377 (406)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred             EEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeee
Confidence            99999999999999999999999999999999999988888887653
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-32
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-26
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-19
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-09
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-32
 Identities = 83/381 (21%), Positives = 133/381 (34%), Gaps = 24/381 (6%)

Query: 6   GRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAF 64
              H    +    V + G    G LG G    +      ++ P    VVQ  A   H   
Sbjct: 4   KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVC 61

Query: 65  VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHV 124
           + +SGQV++ G N     G   +          +        QV+AG + T  LT  G V
Sbjct: 62  LSKSGQVYSFGCNDEGALGRDTSVEGSEMVP-GKVELQEKVVQVSAGDSHTAALTDDGRV 120

Query: 125 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 184
              GS        G             ++    VV++A+G  +++ +T +G +Y+ G G 
Sbjct: 121 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 180

Query: 185 NFCLGHGEQHDELQPRAIQTFR--------------RKGIHVVRVSAGDEHVVALDSSGY 230
              LG   +    +       R              R  +       G     A+   G+
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240

Query: 231 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHL--AVQVCARKRKTFVLVDTGSVYGFGW 288
           VY +G      LG        +P+ L+S K+     V     +  T  +   G  Y  G 
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300

Query: 289 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 348
             +G LG  +      +  P ++  L A  VS ++ G      VT  GR+F +G     Q
Sbjct: 301 AEYGRLGLGEGAEEKSI--PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 356

Query: 349 LGHDTLRGCLEPTEIFIQEME 369
           LG         P E+  +++E
Sbjct: 357 LGTGQDEDAWSPVEMMGKQLE 377
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.52
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.44
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 95.9
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 93.89
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 93.86
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 91.93
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 91.72
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 91.62
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 90.9
d1wp5a_323 Topoisomerase IV subunit A, ParC, C-terminal domai 90.61
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 90.0
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 89.89
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 83.61
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 82.23
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-60  Score=444.56  Aligned_cols=353  Identities=23%  Similarity=0.293  Sum_probs=288.2

Q ss_pred             CeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCC
Q 017198            8 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRD   86 (375)
Q Consensus         8 ~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~   86 (375)
                      .|++++ .||+||+||.|.+||||.+........|.++..+.  +|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~   83 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT   83 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCC
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccc
Confidence            699999 99999999999999999998777677787877665  799999999999999999999999999999999987


Q ss_pred             CCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC
Q 017198           87 TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS  166 (375)
Q Consensus        87 ~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~  166 (375)
                      ... ...|.+.......+|++|+||..|+++++++|+||+||.+...+.+.........+..........+|++|++|..
T Consensus        84 ~~~-~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~  162 (401)
T d1a12a_          84 SVE-GSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGND  162 (401)
T ss_dssp             CST-TGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSS
T ss_pred             ccc-cccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEeccc
Confidence            653 3333333434566899999999999999999999999987655544332222222221111222268999999999


Q ss_pred             eEEEEECCCcEEEEeCCCCCccCCCCCCCc-----------cCceeeeccc---cCCccEEEEEcCCCeEEEEeCCCCEE
Q 017198          167 YMLAVTGNGVVYSFGSGSNFCLGHGEQHDE-----------LQPRAIQTFR---RKGIHVVRVSAGDEHVVALDSSGYVY  232 (375)
Q Consensus       167 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~-----------~~p~~i~~~~---~~~~~i~~i~~g~~~~~~lt~~g~v~  232 (375)
                      |+++++++|++|+||.|.++|+|.......           ..|..+....   ....+|.+|+||..|+++|+++|++|
T Consensus       163 ~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~  242 (401)
T d1a12a_         163 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY  242 (401)
T ss_dssp             EEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEE
T ss_pred             ceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEe
Confidence            999999999999999999999997644221           1233332111   12347999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCCCcccCeeccCCC--CCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceE
Q 017198          233 TWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI  310 (375)
Q Consensus       233 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~  310 (375)
                      .||.|.++++|.........+.++..+.  ...++.+++|..|+++++++|+||+||.|.++|||.+..  ......|..
T Consensus       243 ~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~--~~~~~~P~~  320 (401)
T d1a12a_         243 GFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG--AEEKSIPTL  320 (401)
T ss_dssp             EEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT--CCCEEEEEE
T ss_pred             eecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcc--cccccCCEE
Confidence            9999999999998887777776665444  346999999999999999999999999999999998753  344567888


Q ss_pred             cCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccceEEEecc
Q 017198          311 LDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE  367 (375)
Q Consensus       311 ~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~  367 (375)
                      ++.+.  +|++|+||.+|+++|+++|+||+||+|.+||||+|+.....+|++|..+.
T Consensus       321 i~~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~  375 (401)
T d1a12a_         321 ISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ  375 (401)
T ss_dssp             CCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred             cCCCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccC
Confidence            88665  69999999999999999999999999999999999999999999886544
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure