Citrus Sinensis ID: 017235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MELAFAHFSSLRISAVTSFRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccEEccccccccccccccccHHHcccccccccccEEcccccccEccccccccHHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHEEEEEcc
Coil and Loop (DISEMBL)
MELAFAHFSSLRISAVtsfrstyphqtktpikpncissehlsktsnkfpsfglyrhrtgfkhaskqrNFIWAssqigaagsdpllnKVSAFRDACWRflrphtirgtaLGSVALVARALIENPNLIKWSLLLKAFSGLLALIcgngyivginqiydigidkvnkpylpiaagdlsVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLflgtiysvppfrMKRFAVAAFLIIATVRGFLLNFGVYYATRAALglsfewnaPVAFITAFVTLFALVIAVTkdlpdvegdrkFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Flexible Loop (DISEMBL)
MELAFAHFSSLRISAVTsfrstyphqtktpikpncissehlsktsNKFPSFGLYRHRTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTkdlpdvegdrKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Low Complexity Region (SEG)
MELAFAHFSSLRISAVTSFRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWslllkafsgllalICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Disordered region (IsUnstruct)
*****AHFSSLRISAVTSF****************************FPSFGLYRHRTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG**
Disordered Region (DISOPRED)
******************************************************************************************FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Disordered Region (DISEMBL)
MELAFAHFSSLRISAVTSFRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Disordered Region (DISPRO)
*******FSSLRISAVTSFRSTYPHQTKTPI**************************TGFKHA*********************LNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELAFAHFSSLRISAVTSFRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
Q1ACB3	386	Homogentisate phytyltrans	yes	no	0.957	0.930	0.713	1e-143
Q0D576	379	Probable homogentisate ph	yes	no	0.797	0.788	0.769	1e-132
Q8VWJ1	393	Homogentisate phytyltrans	no	no	0.92	0.877	0.310	2e-35
B7FA90	404	Probable homogentisate ph	no	no	0.8	0.742	0.353	2e-34
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.690	0.631	0.306	6e-23
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.789	0.723	0.296	3e-21
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.493	0.656	0.287	7e-11
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.410	0.56	0.294	4e-09
Q5W6H5	376	Chlorophyll synthase, chl	no	no	0.434	0.433	0.286	5e-08
Q9M3W5	378	Chlorophyll synthase, chl	N/A	no	0.448	0.444	0.284	5e-08

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/366 (71%), Positives = 301/366 (82%), Gaps = 7/366 (1%)

Query: 1   MELAFAHFSSLRISAVTS--FRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRT 58
           MEL+ +    +R S++      +++ H+    +    IS         +F S    R R+
Sbjct: 1   MELSISQSPRVRFSSLAPRFLAASHHHRPSVHLAGKFISLPR----DVRFTSLSTSRMRS 56

Query: 59  GFKHASKQRNFIWASSQIGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVAR 117
            F   + ++  I A SQ+GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS ALV R
Sbjct: 57  KFVSTNYRKISIRACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTR 116

Query: 118 ALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ 177
           ALIEN +LIKWSL+LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ
Sbjct: 117 ALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ 176

Query: 178 SAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATV 237
           SAW LVIFFA+ GLL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLIIATV
Sbjct: 177 SAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATV 236

Query: 238 RGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIST 297
           RGFLLNFGVY+ATRAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+IST
Sbjct: 237 RGFLLNFGVYHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQIST 296

Query: 298 LATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLE 357
           LATKLGV+NIAFLGSGLLL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+FQTW+LE
Sbjct: 297 LATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLE 356

Query: 358 RANYTK 363
           +ANYTK
Sbjct: 357 KANYTK 362

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  470 bits (1210), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/299 (76%), Positives = 258/299 (86%)

Query: 65  KQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPN 124
            +R+ +   SQ GAAG  PL   +S  +D+CWRFLRPHTIRGTALGS+ALVARALIENP 
Sbjct: 57  SRRDAVRVCSQAGAAGPAPLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQ 116

Query: 125 LIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVI 184
           LI W L+ KAF GL+ALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSVQ+AW LV+
Sbjct: 117 LINWWLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVV 176

Query: 185 FFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 244
            FA  G  IV  NFGPFITSLYCLGLFLGTIYSVPPFR+KR+ VAAFLIIATVRGFLLNF
Sbjct: 177 LFAAAGFSIVVTNFGPFITSLYCLGLFLGTIYSVPPFRLKRYPVAAFLIIATVRGFLLNF 236

Query: 245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV 304
           GVYYATRAALGL+F+W++PVAFIT FVTLFALVIA+TKDLPDVEGDRK++ISTLATKLGV
Sbjct: 237 GVYYATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGV 296

Query: 305 KNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 363
           +NIAFLGSGLL+ NYVAAI  A  MPQAFRR +M+P H  LA  ++FQTW+LE+A YTK
Sbjct: 297 RNIAFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTK 355

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 195/380 (51%), Gaps = 35/380 (9%)

Query: 9   SSLRISAVTSFRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLY-RHRTGFKHASKQR 67
            +L++ +++  R      +K   KP      +L +   +  S  LY +H++ F+  +   
Sbjct: 22  QNLKLHSLSEIRVLRCDSSKVVAKPKF--RNNLVRPDGQGSSLLLYPKHKSRFRVNA--- 76

Query: 68  NFIWASSQIGAAGSDPLLNKVSAFRD---ACWRFLRPHTIRGTALGSVALVARALIENPN 124
                + Q  A  S+   +K  +FRD   A +RF RPHT+ GT L S+  V+   +E  +
Sbjct: 77  ----TAGQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVL-SILSVSFLAVEKVS 128

Query: 125 LIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVI 184
            I   L       ++A +  N YIVG+NQ+ D+ IDKVNKPYLP+A+G+ SV +   +V 
Sbjct: 129 DISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVA 188

Query: 185 FFAVTGLLIVAFNFG------PFITSLYCLGLFLGTIYSV--PPFRMKRFAVAAFLIIAT 236
            F+     I++F  G      P   +L+ +   LGT YS+  P  R KRFA+ A + I  
Sbjct: 189 SFS-----IMSFWLGWIVGSWPLFWALF-VSFMLGTAYSINLPLLRWKRFALVAAMCILA 242

Query: 237 VRGFLLNFGVYYATRA-ALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKI 295
           VR  ++    Y   +    G    +  P+ F TAF++ F++VIA+ KD+PD+EGD+ F I
Sbjct: 243 VRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGI 302

Query: 296 STLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWL 355
            + +  LG K + +    LL + Y  AIL     P  + + + +  HVILA+ L  +   
Sbjct: 303 RSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKS 362

Query: 356 LERANYTKVILATCCTLGMW 375
           ++ ++ T++   T C + +W
Sbjct: 363 VDLSSKTEI---TSCYMFIW 379

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 169/331 (51%), Gaps = 31/331 (9%)

Query: 41  LSKTSNKFPSFGLYRHRTGFKHASKQRNFIWASSQIGAAG-----------SDPLLNKVS 89
           LS    + PSF   +   G+K +  +      SS   A+G           S  +   +S
Sbjct: 46  LSSQRTQGPSFDQCQKFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSSSIWKPIS 105

Query: 90  AFRDACWRFLRPHTIRGTALG--SVALVARALIENPNLIKWSLLLKAFSGLLALICGNGY 147
           +  DA +RF RPHT+ GTAL   SV+L+A   +EN + +    L      ++A +  N Y
Sbjct: 106 SSLDAFYRFSRPHTVIGTALSIVSVSLLA---VENLSDVSPLFLTGLLEAVVAALFMNIY 162

Query: 148 IVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGL-LIVAFNFGPFITSLY 206
           IVG+NQ++DI IDKVNKP LP+A+G+ S  +   LV  FA     L  A    P   +L+
Sbjct: 163 IVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALF 222

Query: 207 CLGLFLGTIYSV--PPFRMKRFAVAAFLIIATVRG------FLLNFGVYYATRAALGLSF 258
            +   LGT YS+  P  R KR AV A L I  VR       F L+   +   R A+    
Sbjct: 223 -ISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAV---- 277

Query: 259 EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 318
            +  P+ F TAF+T F++VIA+ KD+PD+EGDR F I + + +LG K + ++  GLL + 
Sbjct: 278 -FTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMA 336

Query: 319 YVAAILAAIYMPQAFRRNLMIPAHVILASCL 349
           Y  AIL        + +   +  H ILA+ L
Sbjct: 337 YCVAILMGATSACLWSKYATVVGHAILAAIL 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  108 bits (270), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 151/287 (52%), Gaps = 28/287 (9%)

Query: 82  DP--LLNKVSAFRDACWRFLRPHTIRGTALGSV--ALVARALIENPNLIKWSLLLKAFSG 137
           DP  + + V+   D  ++F RP+ +    LG+   +LVA   +E  + +  +  +     
Sbjct: 102 DPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVA---VEKLSDLSLAFFIGWLQV 158

Query: 138 LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAF- 196
           ++A+IC + + VG+NQ+ DI IDK+NKP LP+A+G LS ++   +VI  A + +L + F 
Sbjct: 159 VVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRN---VVIITASSLILGLGFA 215

Query: 197 ---NFGPFITSLYCLGLFLGTIYSV--PPFRMKRFAV-AAFLIIATVR-----GFLLNFG 245
              +  P   +++ +   + + Y+V  P  R K++ V  A   IA V      GF L+  
Sbjct: 216 WIVDSWPLFWTVF-ISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQ 274

Query: 246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK 305
                R        +  P+ F TA V+++A+VIA+ KD+PD+EGD KF I +L+ +LG K
Sbjct: 275 TCVFKRPT-----TFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPK 329

Query: 306 NIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQ 352
            + ++   LL + Y   IL     P  + + + +  H +LAS L + 
Sbjct: 330 RVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYH 376

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 157/331 (47%), Gaps = 35/331 (10%)

Query: 34  NCISSEHLSKTSN-KFPSFGLYRHRTGFK-HASKQRNFIWASSQIGAAGSDPLLNKVSAF 91
            CI      +  N KF    + +   GF+ HAS  +N +           D + N +SAF
Sbjct: 68  KCIRGGSTYQECNRKFVVKAISKQPLGFEAHASNPKNIL-----------DSVKNVLSAF 116

Query: 92  RDACWRFLRPHTIRGTALG--SVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIV 149
               + F  P+T+ G  L   S +L+A   +E  + I  S L+    G+L  +    Y+ 
Sbjct: 117 ----YWFSYPYTMIGITLCAFSSSLLA---VEKLSDISLSFLIGVLQGVLPQLFIEIYLC 169

Query: 150 GINQIYDIGIDKVNKPYLPIAAGDLSVQ-----SAWFLVIFFAVTGLLIVAFNFGPFITS 204
           G+NQ+YD+ IDK+NKP+LP+A+G  S +     SA FL + F  T +        P I +
Sbjct: 170 GVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWIT----GSWPLICN 225

Query: 205 LYCLGLFLGTIYS--VPPFRMKRFA-VAAFLIIATVRGFLLNFGVYYATRAALGLSFEWN 261
           L  +     T YS  VP  R KR+  VAA  +I+T    L     ++     L     + 
Sbjct: 226 LVVIASSW-TAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFP 284

Query: 262 APVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 321
             + F+ AF+T ++L +A++KD+PDVEGD++  I + A +LG K   ++      + +  
Sbjct: 285 RSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGV 344

Query: 322 AILAAIYMPQAFRRNLMIPAHVILASCLLFQ 352
            ILA       + +      + +LAS L +Q
Sbjct: 345 GILAGASCSHFWTKIFTGMGNAVLASILWYQ 375

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 34/219 (15%)

Query: 97  RFLRPHTIRGTALGSVA--LVARALIENPNLIKWSLLLKAF---SGLLALICGNGYIVGI 151
           + +R H + G ALG++   LV+          +W L LK     + ++ LI   GY+  I
Sbjct: 8   QLVRIHNVIGAALGAIMGFLVSS---------QWYLELKGILLSALVVGLIAAGGYV--I 56

Query: 152 NQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGL-LIVAFNFGPFITSLYCLGL 210
           N +YD+ IDK+NKPY PI +G +SV  A  L I   + G+ L +  N    + +L     
Sbjct: 57  NDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALVTA-- 114

Query: 211 FLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSF---EWNAPVAFI 267
            +G IY      +K+      L++AT     + +G         GL+F    W   +   
Sbjct: 115 -IGLIYYAK--DLKKTGFYGNLLVATTTALSIFYG---------GLAFFSDNWLLRIIIP 162

Query: 268 TAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKN 306
           T +     L+  + K + D  GD    + TLAT LG+  
Sbjct: 163 TLYAFFLTLIREIVKGIEDYNGDSLNNVKTLATTLGINK 201

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 138 LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA-WFLVIFFAVTGLLIVAF 196
           +++LI   GY+  IN +YDI +DK+NKP  P+ +G ++V  A  F ++ FAV  ++ +  
Sbjct: 44  VVSLIAAGGYV--INDVYDIEVDKINKPERPLPSGRIAVNIARRFSIVLFAVGLIISIPL 101

Query: 197 NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGL 256
              PF  +L  + L      S     +K+  +    I+A           YY   A+  L
Sbjct: 102 GLIPFGFALITIVLLYEYARS-----LKKLGLVGNFIVALTSA----LSAYYGGLASGSL 152

Query: 257 SFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKN 306
              +  P    T ++  F L     K + D+EGD++  ++TLA KLG K+
Sbjct: 153 LGNFIIP----TIYIFFFTLSREFVKGIEDIEGDKRNGVNTLAVKLGEKS 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 15/178 (8%)

Query: 143 CGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWFLVIFFAVTGLL--IVAF 196
           C  GY   IN  YD  ID +N+PY PI +G +S    +   W L++     G L  + A 
Sbjct: 135 CLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENEVITQIWALLLAGLGLGALLDVWAG 194

Query: 197 NFGPFITSLYCLGLFLGTIYSVPPFRMKRFA-VAAFLIIATVRGFLLNFGVYYATRAALG 255
           +  P I  L   G  L  IYS PP ++K+   +  F + A+  G       ++A +A  G
Sbjct: 195 HDFPIIFYLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGL-----PWWAGQALFG 249

Query: 256 LSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSG 313
                   +  +T+  ++  L IA+  D   VEGDR   + +L    G++   ++  G
Sbjct: 250 TL---TPDIVVLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVG 304

Involved in one of the last steps of the biosynthesis of chlorophyll a.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 15/183 (8%)

Query: 138 LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWFLVIFFAVTGLL- 192
           L++  C  GY   IN  YD  ID +N+PY PI +G +S    +   W L++     G L 
Sbjct: 132 LMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLGALL 191

Query: 193 -IVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFA-VAAFLIIATVRGFLLNFGVYYAT 250
            I A +  P I  L   G  L  IYS PP ++K+   +  F + A+  G       ++A 
Sbjct: 192 DIWAGHDFPIIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGL-----PWWAG 246

Query: 251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 310
           +A  G        +  +T   ++  L IA+  D   +EGDR   + +L    G++   ++
Sbjct: 247 QALFGTL---TPDIVVLTCLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWI 303

Query: 311 GSG 313
             G
Sbjct: 304 CVG 306

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a with either geranylgeranyldiphosphate (GGPP) or phytyldiphosphate (PhyPP). May also use with a lower efficiency the monophosphates GGMP and PhyMP, but not the non-phosphorylated alcohols geranylgeraniol and phytol. The tetraprenyl diphosphate must bind to the enzyme as the first substrate and esterification occurs when this pre-loaded enzyme meets the second substrate, chlorophyllide.

Avena sativa (taxid: 4498)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
224088146	391	predicted protein [Populus trichocarpa]	0.968	0.928	0.765	1e-155
297739777	390	unnamed protein product [Vitis vinifera]	0.962	0.925	0.777	1e-154
255581572	373	bacteriochlorophyll synthase, putative [	0.949	0.954	0.757	1e-153
297833984	385	prenyltransferase [Arabidopsis lyrata su	0.957	0.932	0.715	1e-145
225441577	323	PREDICTED: homogentisate phytyltransfera	0.784	0.910	0.857	1e-141
145332363	386	homogentisate solanesyltransferase [Arab	0.957	0.930	0.713	1e-141
238479737	393	homogentisate solanesyltransferase [Arab	0.957	0.913	0.699	1e-138
10998133	441	unnamed protein product [Arabidopsis tha	0.829	0.705	0.762	1e-138
449437534	389	PREDICTED: homogentisate phytyltransfera	0.962	0.928	0.721	1e-137
356500395	389	PREDICTED: homogentisate phytyltransfera	0.856	0.825	0.743	1e-134

>gi|224088146|ref|XP_002308343.1| predicted protein [Populus trichocarpa] gi|222854319|gb|EEE91866.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/367 (76%), Positives = 309/367 (84%), Gaps = 4/367 (1%)

Query: 1   MELAFAHFSSLRISAVTSFRSTYPHQTKTPIKPNCISSEHLSKTSNKFPS----FGLYRH 56
           MEL+F+  SSL ISA+ + R+T  HQ K PIKP   S +   K+S  FPS    + L R 
Sbjct: 1   MELSFSPPSSLGISALNTHRNTSSHQPKIPIKPTSKSFDLFFKSSKPFPSSTEIYSLKRS 60

Query: 57  RTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVA 116
                +   +RN IWA SQ GAAGSDP+LNK+S F+DACWRFLRPHTIRGTALGS ALVA
Sbjct: 61  LKLAPNRHYRRNPIWACSQAGAAGSDPILNKISDFKDACWRFLRPHTIRGTALGSTALVA 120

Query: 117 RALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSV 176
           RALIEN N+IKWSL+LKAFSGL ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSV
Sbjct: 121 RALIENTNMIKWSLVLKAFSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSV 180

Query: 177 QSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIAT 236
           QSAW LVIFFAV G+LIV  NFGPFITSLYCLGLFLGTIYSVPP R KRF V AFLIIAT
Sbjct: 181 QSAWLLVIFFAVAGVLIVGLNFGPFITSLYCLGLFLGTIYSVPPLRFKRFPVIAFLIIAT 240

Query: 237 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIS 296
           VRGFLLNFGVY+ATRAALGL FEW++PVAFIT FVTLFALVIA+TKDLPDVEGDRK+ IS
Sbjct: 241 VRGFLLNFGVYHATRAALGLPFEWSSPVAFITTFVTLFALVIAITKDLPDVEGDRKYNIS 300

Query: 297 TLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLL 356
           TLATKLGV+NIAFLGSGLLL+NYV A+LAAIYMPQ F R+LMIPAH ILA  L+FQ W+L
Sbjct: 301 TLATKLGVRNIAFLGSGLLLVNYVGAVLAAIYMPQDFSRSLMIPAHTILALSLVFQMWVL 360

Query: 357 ERANYTK 363
           E+ANYTK
Sbjct: 361 EQANYTK 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739777|emb|CBI29959.3| unnamed protein product [Vitis vinifera]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/368 (77%), Positives = 311/368 (84%), Gaps = 7/368 (1%)

Query: 1   MELAFAHFSSLRISAVTSF-RSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRTG 59
           MELAF+  SSLRISA T    S+Y H+ + PI P C SS  L K+     S G + HRTG
Sbjct: 1   MELAFSPSSSLRISATTPHCDSSYLHR-RIPINPACKSSVWLLKSPENPSSIG-FHHRTG 58

Query: 60  FKHASKQRNF----IWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALV 115
           F       +F    IWAS+Q+GAAGSDP LNK S F+DACWRFLRPHTIRGTALGS ALV
Sbjct: 59  FPKPVSSTHFRRFSIWASTQVGAAGSDPPLNKFSVFKDACWRFLRPHTIRGTALGSTALV 118

Query: 116 ARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS 175
           ARALIENPNLIKWSLL KAFSGLLALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLS
Sbjct: 119 ARALIENPNLIKWSLLFKAFSGLLALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLS 178

Query: 176 VQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA 235
           VQSAWFLV+FFAV G+LIV  NFG FITSLYCLGL LGTIYSVPPFRMKRF VAAFLIIA
Sbjct: 179 VQSAWFLVLFFAVAGVLIVGSNFGSFITSLYCLGLVLGTIYSVPPFRMKRFPVAAFLIIA 238

Query: 236 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKI 295
           TVRGFLLNFGVYYATRAALGL F W+APV FIT FVTLFALVIA+TKDLPDVEGDRK++I
Sbjct: 239 TVRGFLLNFGVYYATRAALGLPFMWSAPVVFITTFVTLFALVIAITKDLPDVEGDRKYQI 298

Query: 296 STLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWL 355
           STLATKLGV+NIAFLGSGLLL+NY+ +ILAAIYMPQAFR +LMIPAH ILA+ L+FQ  +
Sbjct: 299 STLATKLGVRNIAFLGSGLLLVNYIGSILAAIYMPQAFRLSLMIPAHAILAAGLIFQARV 358

Query: 356 LERANYTK 363
           LE+ANYTK
Sbjct: 359 LEQANYTK 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581572|ref|XP_002531591.1| bacteriochlorophyll synthase, putative [Ricinus communis] gi|223528787|gb|EEF30794.1| bacteriochlorophyll synthase, putative [Ricinus communis]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/367 (75%), Positives = 310/367 (84%), Gaps = 11/367 (2%)

Query: 1   MELAFAHFSSLRISAVTSF---RSTYPHQTKTPIKPNCISSEH-----LSKTSNKFPSFG 52
           MEL F+  SSLRI A+TS     S + HQ+K P KP   ++ +      SK S   P  G
Sbjct: 1   MELTFSPSSSLRIPAITSHCNPSSHHHHQSKLPTKPTAAAAANSPCFSFSKCSKLLPLSG 60

Query: 53  LYRHRTGFKHA---SKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTAL 109
            Y +R   KHA   S +RN IWA +++GAAGSDP+LNK+S F+DACWRFLRPHTIRGTAL
Sbjct: 61  FYTNRNCSKHAPNTSFRRNSIWACTKVGAAGSDPVLNKISEFKDACWRFLRPHTIRGTAL 120

Query: 110 GSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI 169
           GS ALVARALIENPNLIKWSLLLKA SGL ALICGNGYIVGINQIYDIGIDKVNKPYLPI
Sbjct: 121 GSTALVARALIENPNLIKWSLLLKAVSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPI 180

Query: 170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVA 229
           AAGDLSVQSAW LVIFF+VTG+L+V  NFGPFITSLYCLGLFLGTIYS+PPFRMKRFAVA
Sbjct: 181 AAGDLSVQSAWLLVIFFSVTGILMVGLNFGPFITSLYCLGLFLGTIYSIPPFRMKRFAVA 240

Query: 230 AFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEG 289
           AFLIIA VRGFLLNFGVY+ATRAALGLSFEW++PVAFIT FVTLFALVIA+TKDLPDVEG
Sbjct: 241 AFLIIAMVRGFLLNFGVYHATRAALGLSFEWSSPVAFITTFVTLFALVIAITKDLPDVEG 300

Query: 290 DRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCL 349
           DRK+KISTLAT LGV+NIAFLG+GLLLLNY+ A+ AAIYMPQAFRR+LMIP H ILA+ L
Sbjct: 301 DRKYKISTLATSLGVRNIAFLGTGLLLLNYIGAVWAAIYMPQAFRRSLMIPVHTILAAFL 360

Query: 350 LFQTWLL 356
           +FQ  L+
Sbjct: 361 IFQVGLI 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833984|ref|XP_002884874.1| prenyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297330714|gb|EFH61133.1| prenyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/365 (71%), Positives = 304/365 (83%), Gaps = 6/365 (1%)

Query: 1   MELAFAHFSSLRISAVTS--FRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRT 58
           MEL+ +    +R S++      +++ H++   +    IS          F S    R R+
Sbjct: 1   MELSISQSPCVRFSSLAPRFLAASHHHRSSVHLAGKFISLPR----DVSFTSLSTSRMRS 56

Query: 59  GFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARA 118
            F   + ++  I A SQ+GAAG+DP+L++++ F++ACWRFLRPHTIRGTALGS ALVARA
Sbjct: 57  KFVSTNYRKISIQACSQVGAAGTDPVLDRITRFQNACWRFLRPHTIRGTALGSTALVARA 116

Query: 119 LIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQS 178
           LIEN +LIKWSL+LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQS
Sbjct: 117 LIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQS 176

Query: 179 AWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVR 238
           AW LVIFFA+ GLL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF +AAFLIIATVR
Sbjct: 177 AWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPIAAFLIIATVR 236

Query: 239 GFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTL 298
           GFLLNFGVY+ATRAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+ISTL
Sbjct: 237 GFLLNFGVYHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTL 296

Query: 299 ATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLER 358
           ATKLGV+NIAFLGSGLLL+NYV+AI  A YMPQ FR +LMIPAH+ILASCL+FQTW+LE+
Sbjct: 297 ATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHLILASCLIFQTWVLEK 356

Query: 359 ANYTK 363
           ANYTK
Sbjct: 357 ANYTK 361

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441577|ref|XP_002276728.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic [Vitis vinifera]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/294 (85%), Positives = 271/294 (92%)

Query: 70  IWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWS 129
           + AS+Q+GAAGSDP LNK S F+DACWRFLRPHTIRGTALGS ALVARALIENPNLIKWS
Sbjct: 6   VQASTQVGAAGSDPPLNKFSVFKDACWRFLRPHTIRGTALGSTALVARALIENPNLIKWS 65

Query: 130 LLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVT 189
           LL KAFSGLLALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSVQSAWFLV+FFAV 
Sbjct: 66  LLFKAFSGLLALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVLFFAVA 125

Query: 190 GLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 249
           G+LIV  NFG FITSLYCLGL LGTIYSVPPFRMKRF VAAFLIIATVRGFLLNFGVYYA
Sbjct: 126 GVLIVGSNFGSFITSLYCLGLVLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYA 185

Query: 250 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAF 309
           TRAALGL F W+APV FIT FVTLFALVIA+TKDLPDVEGDRK++ISTLATKLGV+NIAF
Sbjct: 186 TRAALGLPFMWSAPVVFITTFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAF 245

Query: 310 LGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 363
           LGSGLLL+NY+ +ILAAIYMPQAFR +LMIPAH ILA+ L+FQ  +LE+ANYTK
Sbjct: 246 LGSGLLLVNYIGSILAAIYMPQAFRLSLMIPAHAILAAGLIFQARVLEQANYTK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332363|ref|NP_001078138.1| homogentisate solanesyltransferase [Arabidopsis thaliana] gi|122177780|sp|Q1ACB3.1|HPT2_ARATH RecName: Full=Homogentisate phytyltransferase 2, chloroplastic; AltName: Full=Vitamin E pathway gene 2-2 protein; Short=AtVTE2-2; Flags: Precursor gi|81295668|gb|ABB70127.1| homogentisate phytyltransferase VTE2-2 [Arabidopsis thaliana] gi|332641604|gb|AEE75125.1| homogentisate solanesyltransferase [Arabidopsis thaliana]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/366 (71%), Positives = 301/366 (82%), Gaps = 7/366 (1%)

Query: 1   MELAFAHFSSLRISAVTS--FRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRT 58
           MEL+ +    +R S++      +++ H+    +    IS         +F S    R R+
Sbjct: 1   MELSISQSPRVRFSSLAPRFLAASHHHRPSVHLAGKFISLPR----DVRFTSLSTSRMRS 56

Query: 59  GFKHASKQRNFIWASSQIGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVAR 117
            F   + ++  I A SQ+GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS ALV R
Sbjct: 57  KFVSTNYRKISIRACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTR 116

Query: 118 ALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ 177
           ALIEN +LIKWSL+LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ
Sbjct: 117 ALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ 176

Query: 178 SAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATV 237
           SAW LVIFFA+ GLL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLIIATV
Sbjct: 177 SAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATV 236

Query: 238 RGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIST 297
           RGFLLNFGVY+ATRAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+IST
Sbjct: 237 RGFLLNFGVYHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQIST 296

Query: 298 LATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLE 357
           LATKLGV+NIAFLGSGLLL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+FQTW+LE
Sbjct: 297 LATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLE 356

Query: 358 RANYTK 363
           +ANYTK
Sbjct: 357 KANYTK 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479737|ref|NP_001154609.1| homogentisate solanesyltransferase [Arabidopsis thaliana] gi|332641605|gb|AEE75126.1| homogentisate solanesyltransferase [Arabidopsis thaliana]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/373 (69%), Positives = 297/373 (79%), Gaps = 14/373 (3%)

Query: 1   MELAFAHFSSLRISAVTS--FRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRHRT 58
           MEL+ +    +R S++      +++ H+    +    IS         +F S    R R 
Sbjct: 1   MELSISQSPRVRFSSLAPRFLAASHHHRPSVHLAGKFISLPR----DVRFTSLSTSRMRI 56

Query: 59  -----GFKHASKQRNFIWASSQI--GAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALG 110
                 FK      N+     QI  GAA SD P+L++++ F++ACWRFLRPHTIRGTALG
Sbjct: 57  LAVALTFKSRCVYVNYEIPKDQILVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALG 116

Query: 111 SVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 170
           S ALV RALIEN +LIKWSL+LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA
Sbjct: 117 STALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 176

Query: 171 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAA 230
           AGDLSVQSAW LVIFFA+ GLL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAA
Sbjct: 177 AGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAA 236

Query: 231 FLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGD 290
           FLIIATVRGFLLNFGVY+ATRAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGD
Sbjct: 237 FLIIATVRGFLLNFGVYHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGD 296

Query: 291 RKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLL 350
           RKF+ISTLATKLGV+NIAFLGSGLLL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+
Sbjct: 297 RKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLI 356

Query: 351 FQTWLLERANYTK 363
           FQTW+LE+ANYTK
Sbjct: 357 FQTWVLEKANYTK 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10998133|dbj|BAB03104.1| unnamed protein product [Arabidopsis thaliana]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/328 (76%), Positives = 279/328 (85%), Gaps = 17/328 (5%)

Query: 55  RHRTGFKHASKQRNFIWASSQIGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVA 113
           R    F + + +  +  A SQ+GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS A
Sbjct: 69  RSVCAFCNGTHKSRYYQACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTA 128

Query: 114 LVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGD 173
           LV RALIEN +LIKWSL+LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGD
Sbjct: 129 LVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGD 188

Query: 174 LSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLI 233
           LSVQSAW LVIFFA+ GLL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLI
Sbjct: 189 LSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLI 248

Query: 234 IATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKF 293
           IATVRGFLLNFGVY+ATRAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF
Sbjct: 249 IATVRGFLLNFGVYHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKF 308

Query: 294 KISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMP----------------QAFRRNL 337
           +ISTLATKLGV+NIAFLGSGLLL+NYV+AI  A YMP                Q FR +L
Sbjct: 309 QISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQYAALKRPTLLSFNNEQVFRGSL 368

Query: 338 MIPAHVILASCLLFQTWLLERANYTKVI 365
           MIPAHVILAS L+FQTW+LE+ANYTK I
Sbjct: 369 MIPAHVILASGLIFQTWVLEKANYTKSI 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437534|ref|XP_004136547.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like [Cucumis sativus] gi|449523848|ref|XP_004168935.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like [Cucumis sativus]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/377 (72%), Positives = 304/377 (80%), Gaps = 16/377 (4%)

Query: 1   MELAFAHFSSLRISAVTS-FRSTYPHQTKTPIKPNCISSEHLSKTSNKFPSFGLYRH--- 56
           ME +     SLR  AV S  + + PH TK  ++P        +  S   PSF L+     
Sbjct: 1   MEHSMFQSVSLRTPAVNSTLKPSLPH-TKLLVRPAA------TPPSTLLPSFTLHMQPRW 53

Query: 57  -----RTGFKHASKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGS 111
                R     + K+R  I A +Q+GAAG DPL+N +SAFRDACWRFLRPHTIRGTALGS
Sbjct: 54  PRSCRRNVLTKSWKRRTSIQACTQVGAAGPDPLVNNISAFRDACWRFLRPHTIRGTALGS 113

Query: 112 VALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA 171
           V+LV RALIEN +LIKWSL+ KA SGL ALICGNGYIVGINQIYDIGIDKVNKPYLPIAA
Sbjct: 114 VSLVTRALIENSHLIKWSLVFKALSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAA 173

Query: 172 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAF 231
           GDLSV+SAW LVIFFAV GLL+V  NFGPFITSLY LGLFLGTIYSVPPFRMKRF VAAF
Sbjct: 174 GDLSVKSAWLLVIFFAVAGLLVVGLNFGPFITSLYSLGLFLGTIYSVPPFRMKRFPVAAF 233

Query: 232 LIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDR 291
           LIIATVRGFLLNFGVYYATRAALGL+FEW++PVAFIT FVTLFALVIA+TKDLPDVEGDR
Sbjct: 234 LIIATVRGFLLNFGVYYATRAALGLTFEWSSPVAFITTFVTLFALVIAITKDLPDVEGDR 293

Query: 292 KFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLF 351
           KF+ISTLATKLGV+NI+FLGSGLLLLNYVAAI AAIYMPQAF R +MIP H ILA  L+F
Sbjct: 294 KFQISTLATKLGVRNISFLGSGLLLLNYVAAIAAAIYMPQAFNRFIMIPVHAILALSLIF 353

Query: 352 QTWLLERANYTKVILAT 368
           Q+WLLERANY++  ++T
Sbjct: 354 QSWLLERANYSQEAIST 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500395|ref|XP_003519017.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like [Glycine max]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/327 (74%), Positives = 271/327 (82%), Gaps = 6/327 (1%)

Query: 43  KTSNKFPSFGLYRHR-----TGFKHASKQRNFIWASSQIGAAGSD-PLLNKVSAFRDACW 96
           + S  F S GL+ H             ++ + I A + +GA+GSD PL  ++   +DACW
Sbjct: 39  RFSKHFNSIGLHHHSHRCCSNAVPERPQRPSSIRACTGVGASGSDRPLAERLLDLKDACW 98

Query: 97  RFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYD 156
           RFLRPHTIRGTALGS ALVARALIEN NLIKWSL  KAF GL ALICGNGYIVGINQIYD
Sbjct: 99  RFLRPHTIRGTALGSFALVARALIENTNLIKWSLFFKAFCGLFALICGNGYIVGINQIYD 158

Query: 157 IGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIY 216
           I IDKVNKPYLPIAAGDLSVQSAWFLVIFFA  GL IV  NFGPFI SLY LGLFLGTIY
Sbjct: 159 ISIDKVNKPYLPIAAGDLSVQSAWFLVIFFAAAGLSIVGLNFGPFIFSLYTLGLFLGTIY 218

Query: 217 SVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFAL 276
           SVPPFRMKRF VAAFLIIATVRGFLLNFGVYYATRAALGL+FEW++PV FIT FVT FAL
Sbjct: 219 SVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFAL 278

Query: 277 VIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRN 336
           VIA+TKDLPDVEGDRK++IST ATKLGV+NIAFLGSG+LL+NY+ ++LAAIYMPQAFRR 
Sbjct: 279 VIAITKDLPDVEGDRKYQISTFATKLGVRNIAFLGSGILLVNYIVSVLAAIYMPQAFRRW 338

Query: 337 LMIPAHVILASCLLFQTWLLERANYTK 363
           L+IPAH I A  L++Q W+LE+ANYTK
Sbjct: 339 LLIPAHTIFAISLIYQAWILEQANYTK 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.968	0.923	0.672	1.5e-122
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.757	0.722	0.335	1e-36
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.704	0.648	0.314	3.6e-25
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.706	0.646	0.297	5.9e-24
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.48	0.465	0.289	3.6e-09

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 248/369 (67%), Positives = 284/369 (76%)

Query:     1 MELAFAHFSSLRISAVTS--FRSTYPHQTKTPIKPNCIS-SEHLSKTSNKFPSFGLYRHR 57
             MEL+ +    +R S++      +++ H+    +    IS    +  TS       +    
Sbjct:     1 MELSISQSPRVRFSSLAPRFLAASHHHRPSVHLAGKFISLPRDVRFTSLSTSRMRILAVA 60

Query:    58 TGFKHASKQRNFIWASSQI--GAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVAL 114
               FK      N+     QI  GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS AL
Sbjct:    61 LTFKSRCVYVNYEIPKDQILVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTAL 120

Query:   115 VARALIENPNLIKWXXXXXXXXXXXXXICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDL 174
             V RALIEN +LIKW             ICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDL
Sbjct:   121 VTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDL 180

Query:   175 SVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLII 234
             SVQSAW LVIFFA+ GLL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLII
Sbjct:   181 SVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLII 240

Query:   235 ATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFK 294
             ATVRGFLLNFGVY+ATRAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+
Sbjct:   241 ATVRGFLLNFGVYHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQ 300

Query:   295 ISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTW 354
             ISTLATKLGV+NIAFLGSGLLL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+FQTW
Sbjct:   301 ISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTW 360

Query:   355 LLERANYTK 363
             +LE+ANYTK
Sbjct:   361 VLEKANYTK 369

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 100/298 (33%), Positives = 159/298 (53%)

Query:    86 NKVSAFRD---ACWRFLRPHTIRGTALGSVALVARALIENPNLIKWXXXXXXXXXXXXXI 142
             +K  +FRD   A +RF RPHT+ GT L S+  V+   +E  + I               +
Sbjct:    88 SKQKSFRDSLDAFYRFSRPHTVIGTVL-SILSVSFLAVEKVSDISPLLFTGILEAVVAAL 146

Query:   143 CGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG--P 200
               N YIVG+NQ+ D+ IDKVNKPYLP+A+G+ SV +   +V  F++    +  +  G  P
Sbjct:   147 MMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWL-GWIVGSWP 205

Query:   201 FITSLYCLGLFLGTIYSV--PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRA-ALGLS 257
                +L+ +   LGT YS+  P  R KRFA+ A + I  VR  ++    Y   +    G  
Sbjct:   206 LFWALF-VSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query:   258 FEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL 317
               +  P+ F TAF++ F++VIA+ KD+PD+EGD+ F I + +  LG K + +    LL +
Sbjct:   265 ILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQM 324

Query:   318 NYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 375
              Y  AIL     P  + + + +  HVILA+ L  +   ++ ++ T++   T C + +W
Sbjct:   325 AYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEI---TSCYMFIW 379

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 88/280 (31%), Positives = 141/280 (50%)

Query:    82 DP--LLNKVSAFRDACWRFLRPHTIRGTALGSV--ALVARALIENPNLIKWXXXXXXXXX 137
             DP  +   V+   D  ++F RP+ I    LG+   +LVA   +E  + +           
Sbjct:    99 DPKNIWGSVNDALDTFYKFCRPYAIFSVVLGATFKSLVA---VERLSDLSLAFFIGWLQV 155

Query:   138 XXXXICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN 197
                 IC + + VG+NQ+ DI IDK+NKP LP+A+G+LS ++   +     + GL   A+ 
Sbjct:   156 VVAVICIHIFDVGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGF-AWI 214

Query:   198 FG--PFITSLYCLGLFLGTIYSV--PPFRMKRFAV-AAFLIIATVRGFL-LNFGVYYATR 251
              G  P   +++   +F    Y+V  P  R K++ V  A   IA V     L F ++  T 
Sbjct:   215 VGSWPLFWTVFICCMFAAA-YNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQT- 272

Query:   252 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLG 311
                     +  P+ F TA V+++A+VIA+ KD+PD+EGD KF I +L+ +LG K + ++ 
Sbjct:   273 CVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWIC 332

Query:   312 SGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLF 351
               LL + Y   IL     P  + + + +  H ILAS L +
Sbjct:   333 VSLLEMAYGVTILVGATSPILWSKIITVLGHAILASVLWY 372

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 275 (101.9 bits), Expect = 5.9e-24, P = 5.9e-24
 Identities = 83/279 (29%), Positives = 140/279 (50%)

Query:    82 DP--LLNKVSAFRDACWRFLRPHTIRGTALGSV--ALVARALIENPNLIKWXXXXXXXXX 137
             DP  + + V+   D  ++F RP+ +    LG+   +LVA   +E  + +           
Sbjct:   102 DPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVA---VEKLSDLSLAFFIGWLQV 158

Query:   138 XXXXICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIV-AF 196
                 IC + + VG+NQ+ DI IDK+NKP LP+A+G LS ++   +     + GL      
Sbjct:   159 VVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIV 218

Query:   197 NFGPFITSLYCLGLFLGTIYSV--PPFRMKRFAV-AAFLIIATVRGFL-LNFGVYYATRA 252
             +  P   +++ +   + + Y+V  P  R K++ V  A   IA V     L F ++  T  
Sbjct:   219 DSWPLFWTVF-ISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQT-C 276

Query:   253 ALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGS 312
                    +  P+ F TA V+++A+VIA+ KD+PD+EGD KF I +L+ +LG K + ++  
Sbjct:   277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query:   313 GLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLF 351
              LL + Y   IL     P  + + + +  H +LAS L +
Sbjct:   337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWY 375

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 57/197 (28%), Positives = 87/197 (44%)

Query:   143 CGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWFLVIF-FAVTGLLIV-AF 196
             C  GY   IN  YD  ID +N+PY PI +G +S    +   W L++    + G+L V A 
Sbjct:   146 CLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDVWAG 205

Query:   197 NFGPFITSLYCLGLFLGTIYSVPPFRMKRFA-VAAFLIIATVRGFLLNFGVYYATRAALG 255
             +  P +  L   G  L  IYS PP ++K+   V  F + A+          ++A +A  G
Sbjct:   206 HTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVGNFALGASYISL-----PWWAGQALFG 260

Query:   256 LSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL 315
                     V  +T   ++  L IA+  D   VEGDR   + +L    G +   ++  G +
Sbjct:   261 TL---TPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAI 317

Query:   316 LLNY--VAAILAAIYMP 330
              +    VA  L A   P
Sbjct:   318 DITQLSVAGYLLASGKP 334


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.140   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      375       362   0.00082  117 3  11 22  0.41    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  233 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.72u 0.12s 26.84t   Elapsed:  00:00:01
  Total cpu time:  26.72u 0.12s 26.84t   Elapsed:  00:00:01
  Start:  Fri May 10 23:44:25 2013   End:  Fri May 10 23:44:26 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1ACB3	HPT2_ARATH	2, ., 5, ., 1, ., n, 8	0.7131	0.9573	0.9300	yes	no
Q0D576	HPT2_ORYSJ	2, ., 5, ., 1, ., n, 8	0.7692	0.7973	0.7889	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VI1085	hypothetical protein (392 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•	•		0.903
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•	•		0.903
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•	•		0.903
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.863
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.851
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.848
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.845
	gw1.XVI.1986.1	hypothetical protein (359 aa)						•	•		0.839

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	375
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-66
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	2e-43
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-23
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-20
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	1e-20
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-16
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	5e-15
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	4e-14
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	3e-12
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	3e-12
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	1e-11
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	3e-10
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-08
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	3e-06
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	7e-06
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	3e-05
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	6e-04
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	0.001
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	0.002
PRK12876	300	PRK12876, ubiA, prenyltransferase; Reviewed	0.003

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  211 bits (540), Expect = 3e-66
 Identities = 96/259 (37%), Positives = 149/259 (57%), Gaps = 1/259 (0%)

Query: 94  ACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQ 153
           A W+F RPHTI GT+L  + L   A+  + N I  + L       +A +CGN YIVG+NQ
Sbjct: 15  ALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQ 74

Query: 154 IYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLG 213
           + DI ID++NKP+LP+AAG+ S +    +VI   +  L++ A   GP++     + L +G
Sbjct: 75  LTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALL-GPWLLITVGISLLIG 133

Query: 214 TIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTL 273
           T YS+PP R+KRF + A L I TVRG ++N G++   +  LG S      V  +T FV +
Sbjct: 134 TAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLV 193

Query: 274 FALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAF 333
           F   IA+ KD+PD+EGDR+++I+T   +LG + +  L   +L   Y+  I   +      
Sbjct: 194 FTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV 253

Query: 334 RRNLMIPAHVILASCLLFQ 352
               +I +H+IL + L ++
Sbjct: 254 NPAFLIVSHLILLALLWWR 272

Length = 308

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  151 bits (384), Expect = 2e-43
 Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 8/243 (3%)

Query: 111 SVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 170
           SV+L+A   + + + + ++ LL+A   L+  +  N YIVG+NQ+YDI IDKVNKPYLP+A
Sbjct: 5   SVSLLAVESLSDFSPLFFTGLLEA---LVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLA 61

Query: 171 AGDLSVQSAWFLVIFFAVTGLLI-VAFNFGPFITSLYCLGLFLGTIYSV--PPFRMKRFA 227
           +G+ SV +   +V  FA+    +       P   +L+ +   LGT YS+  P  R KR A
Sbjct: 62  SGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALF-VSFVLGTAYSINLPLLRWKRSA 120

Query: 228 VAAFLIIATVRGFLLNFGVYYATRA-ALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPD 286
           VAA   I  VR  ++    +   +   LG    +  P+ F TAF+  F++VIA+ KD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 287 VEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILA 346
           VEGDR F I + + +LG K + +L   LL + Y AAIL        + + + +  H ILA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 347 SCL 349
           S L
Sbjct: 241 SIL 243

Length = 280

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 98.1 bits (245), Expect = 2e-23
 Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 20/271 (7%)

Query: 96  WRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIY 155
            + LR        L  +  +   L+    L    LLL AF   LA          IN + 
Sbjct: 14  LKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAF---LAFFLARSAGYVINDLA 70

Query: 156 DIGIDKVNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLG 213
           D  ID++N      P+ +G +SV+ A  L I   + GL +      P    L    L L 
Sbjct: 71  DREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALL-LNPLAFLLSLAALVLA 129

Query: 214 TIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTL 273
             Y      +KRF     L++    G     G       A  +          +     L
Sbjct: 130 LAY----PFLKRFTFLPQLVLGLAFGLGALAG-------AAAVGGSLPLLAWLLLLAAIL 178

Query: 274 FALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAF 333
           + L   +   + D+EGDRK  + +L    G+K    L   LLL    +A+L  + +    
Sbjct: 179 WTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLA---SALLVLLGLLAGL 235

Query: 334 RRNLMIPAHVILASCLLFQTWLLERANYTKV 364
              + +   ++ A  LL+Q  +++  +    
Sbjct: 236 LGLIYLLGLLVAALLLLYQILIVDVRDPPAC 266

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 77/238 (32%), Positives = 111/238 (46%), Gaps = 15/238 (6%)

Query: 128 WSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKV--NKPYLPIAAGDLSVQSAWFLVIF 185
              LL     LLAL+        +N  +D  ID    NKP  P+ +G +S + A  L + 
Sbjct: 19  VLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLA 78

Query: 186 FAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 245
             + GLL+     GP +  L  LGL LG +YS PP R+KR  +   L++    G L+  G
Sbjct: 79  LLLLGLLLALL-LGPLLLLLGLLGLLLGLLYS-PPLRLKRRPLLGELVVGLAFGLLILLG 136

Query: 246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK 305
            Y           +  +P+  +   V L +L I +T D+ DVEGDRK  I TL  +LG K
Sbjct: 137 AYAVGG-------DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRK 189

Query: 306 NIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 363
               L + LL     AA+L  + +       L++ A ++LA  LL    LL R N  +
Sbjct: 190 RALALYALLL----AAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEE 243

Length = 259

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 39/229 (17%)

Query: 128 WSLL--LKAFSG-LLA--LICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFL 182
           W+L   LK  +G LLA  L+CG      +N  +D  +D +N+PY PI +G +S++   +L
Sbjct: 58  WTLENVLKLLAGMLLAGPLLCG--TSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYL 115

Query: 183 VIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKR------FAVAAFLIIAT 236
           +    V GL  VA+  GP++     LGLFL  IYS PP R+K+      +AV        
Sbjct: 116 IAVLTVLGLA-VAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYE--- 171

Query: 237 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIS 296
                   G+ +   AA   +   + P+  +    +L A  I    D   VEGDR+  + 
Sbjct: 172 --------GLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLR 223

Query: 297 TLATKLGVKNIAFLGS-----------GLLLL---NYVAAILAAIYMPQ 331
           +L    G KN A +              LLL       AAI+  + +PQ
Sbjct: 224 SLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQ 272

Length = 314

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 28/209 (13%)

Query: 130 LLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVT 189
           ++L A    + L+C  G +  IN IYDI IDK+NKP  PI +G +S++ A    I   + 
Sbjct: 39  IILAALV--VFLVCAGGNV--INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIV 94

Query: 190 GLLIVAF-NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 248
           GL++  F N   F+ +L  L   L  +Y+     +K+  +   LI+A + G    FG   
Sbjct: 95  GLILSIFINIYAFLIAL--LNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFG--- 146

Query: 249 ATRAALGLSFEWNAPVAFITAFVTLFALVI-AVTKDLPDVEGDRKFKISTLATKLGVKNI 307
                 GL+   N     I      F+     + KD+ D+EGD K  + TL  K G+K  
Sbjct: 147 ------GLAVF-NVLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKS 199

Query: 308 AFLGSGLLL-------LNYVAAILAAIYM 329
            ++   LL+       L Y   I    Y+
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYL 228

Length = 279

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 74.6 bits (183), Expect = 5e-15
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 43/222 (19%)

Query: 138 LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWFLVIF-FAVTGLL 192
           LL+  C  GY   IN  YD  ID +N+PY PI +G +S    +     L I   A+  +L
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 193 IV-AFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV----- 246
            + A +  P +  L   G F+  IYS PP ++K+             G+L NF +     
Sbjct: 120 DLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQ------------NGWLGNFALGASYI 167

Query: 247 ---YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLG 303
              ++A  A  G   E N  +A +T   ++  L IA+  D   VEGDR   + +L    G
Sbjct: 168 ALPWWAGHALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG 224

Query: 304 VKNIAFLGSGLLLL--------------NYVAAILAAIYMPQ 331
           ++  A++  G + +              N  AA L A+ +PQ
Sbjct: 225 IETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVALIIPQ 266

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 67/245 (27%), Positives = 99/245 (40%), Gaps = 28/245 (11%)

Query: 94  ACWRFLRPHTIRGTALGS-VALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGIN 152
           A    LRP       L + +A+V  A+I    L     LL   +   A    N     +N
Sbjct: 6   AYLELLRP----EHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGSANA----LN 57

Query: 153 QIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL 212
             +D  +D++N+P  PI +G +S + A  L I   + G LI A+   P    +  L   L
Sbjct: 58  DYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILG-LIAAYLISPLAFLVVILVSVL 116

Query: 213 GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVT 272
           G +Y+   +++K + +   L +A + G    FG             E N  V  + A   
Sbjct: 117 GILYN---WKLKEYGLIGNLYVAFLTGMTFIFGGIAVG--------ELNEAVILLAAMAF 165

Query: 273 LFALVIAVTKDLPDVEGDRKFKISTLATKLGVK-----NIAF--LGSGLLLLNYVAAILA 325
           L  L   + KD+ DVEGDR     TLA   G K       A   L   L  L Y+  I  
Sbjct: 166 LMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFN 225

Query: 326 AIYMP 330
            +Y+ 
Sbjct: 226 ILYLA 230

Length = 279

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 144 GNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA---WFLVIFFAVTGLLIVAFNFGP 200
           G G+   +N  +D+ +D+VN+P  PI +G LS + A     +V+  A+   + +  + G 
Sbjct: 62  GTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGG 121

Query: 201 ----FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGL 256
                I S    GLF+  IYS PP ++K+      L  A   GF   F  + +  A    
Sbjct: 122 ERGMVIISSILAGLFVAYIYSAPPLKLKK----NILTSAPAVGFSYGFITFLSANALFS- 176

Query: 257 SFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL 316
             +    V ++       A+ + +  D   VEGD++  + +L   +G KN  FL S  ++
Sbjct: 177 --DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKN-TFLVS-FII 232

Query: 317 LNYVAAILAAIYMPQAFRRNLMIPAHVILASCLL 350
           ++ V A+ A +    A+     +  + IL   +L
Sbjct: 233 IDLVFAVFAWL----AWSWGFTVLMYFILVGLVL 262

Length = 331

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 37/198 (18%)

Query: 127 KWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFF 186
            W L+L     L+A   G G+   IN  +D  +D +N+P  PI +G +S++   +  +  
Sbjct: 35  HWWLML--LGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVL 92

Query: 187 AVTGLLIVAFNFGPFITSLYCL-GLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 245
            V GLL VA   G ++  L+ + G+ L  IYS+PP ++KR             G+L    
Sbjct: 93  TVAGLL-VALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKR------------NGWLGP-- 137

Query: 246 VYYATRAALGLSFE---WNA------PVAFITAFVTLF----ALVIAVTKDLPDVEGDRK 292
                  A+GLS+E   W A      P+ + +  V L     A  I    D   VEGDR+
Sbjct: 138 ------PAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQ 191

Query: 293 FKISTLATKLGVKNIAFL 310
             + +L   +GVK  A +
Sbjct: 192 LGLRSLPVMIGVKRAAIV 209

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 27/228 (11%)

Query: 107 TALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPY 166
            A    +LV  A +     I W LLL  F  L+A      YI  IN + D+  D +NKP 
Sbjct: 18  IAALGQSLVYMASLLLGLPISWLLLLITF--LIAAA---VYI--INYLTDLEEDIINKP- 69

Query: 167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAF----NFGPFITSLYCLGLFLGTIYSVPPF- 221
                   S   A+ L +   V GL + A+      GP    ++ + L LG +YSV    
Sbjct: 70  ---ERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKR 126

Query: 222 RMKRFAVAAFLIIATVRGFLLNF-GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAV 280
           R+KR  +   L+++ +        GVYY             + +     F+ L + +  +
Sbjct: 127 RLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIREI 179

Query: 281 TKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 328
             D+ D+EGDRK  + TL   LG +        LL+LN +  IL  + 
Sbjct: 180 VFDIKDIEGDRKSGLKTLPIVLGKERTLKF---LLILNLLFLILLILG 224

Length = 285

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 59/217 (27%), Positives = 86/217 (39%), Gaps = 39/217 (17%)

Query: 143 CGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS-----VQSAWFLVIFFAVTGLLIV-AF 196
              GY   IN  YD  ID +N+PY PI +G +S      Q    L+    +   L V A 
Sbjct: 134 FLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAG 193

Query: 197 NFGPFITSLYCLGLFLGTIYSVPPFRMKR------FAVAAFLIIATVRGFLLNFGVYYAT 250
           +  P +  L   G  L  IYS PP ++K+      +A+ A  I             ++A 
Sbjct: 194 HDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLP----------WWAG 243

Query: 251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK----- 305
           +A  G        V  +T   ++  L IA+  D   +EGDR   + +L    GV+     
Sbjct: 244 QALFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWI 300

Query: 306 -----NIAFLGSGLLLLN----YVAAILAAIYMPQAF 333
                +I  L     LL     Y A  L  + +PQ F
Sbjct: 301 CVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIF 337

Length = 375

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 15/186 (8%)

Query: 140 ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG 199
            L  G G    IN  +D  ID++N+P  PI +G +S + A    I     G+ + AF   
Sbjct: 48  FLATGAGN--AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVAL-AFLLP 104

Query: 200 PFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGL-SF 258
           P   ++      L  +Y+     +K         +A + G    FG      AA+G    
Sbjct: 105 PLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGG-----AAVGTEGL 156

Query: 259 EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 318
                +  + A  TL   +I   KD+ D+EGDR     TL   +GV+   ++ +  LL+ 
Sbjct: 157 LALLVLFALAALATLAREII---KDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVA 213

Query: 319 YVAAIL 324
             A+ L
Sbjct: 214 VAASPL 219

Length = 276

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 151 INQIYDIGIDKVNKPYLPIAAGDLSVQSA-WFLVIFFAVTGLLIVAFNFGPFITSLYCLG 209
           IN  +D  IDK+N+P  P+  G +S ++A ++ ++ FAV   L    N   F+ +L    
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL--GA 113

Query: 210 LFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITA 269
             L  +Y+   +++K       +++A + G    +G     R  L       A    I A
Sbjct: 114 YVLMFLYA---WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGL-------AGYLAICA 163

Query: 270 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 324
           F  L  +   + KD+ D+EGD+     TL   +G K  A++G+   +L  +A+ L
Sbjct: 164 F--LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFL 216

Length = 277

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 48/246 (19%), Positives = 81/246 (32%), Gaps = 20/246 (8%)

Query: 96  WRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIY 155
               RP T+       +   A A     +     + L A    + L          N  +
Sbjct: 12  LELARPKTLPAAIAPVIVGTALAFWYGKS-FNLLVALLALIAAILLQILVNLA---NDYF 67

Query: 156 DI--GIDKVNKPYLP----IAAGDLSVQSAWFLVIFF---AVTGLLIVAFNFGPFITSLY 206
           D   G D      L     I    +       L +F         +I+A      +  L 
Sbjct: 68  DYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG 127

Query: 207 CLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAF 266
            L +  G +Y+  PF +    +    +     G L+  G YY           W   +  
Sbjct: 128 LLCIAAGILYTGGPFPLGYMGLGEIFVGVFF-GPLIVLGAYYIQTG----RLSWAILLPS 182

Query: 267 ITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA 326
           +   + +    I +  +L D+E D +    TLA +LG KN   L + LL++ Y+A ++  
Sbjct: 183 LPVGILIAN--ILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFV 240

Query: 327 IYMPQA 332
           I     
Sbjct: 241 ILGLFP 246

Length = 303

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 15/239 (6%)

Query: 128 WSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KPYLPIAAGDLSVQSAWFLVIF 185
              L      L+A +      +  N+I D  ID  N      P+ +G +S + A  ++I 
Sbjct: 32  LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL 91

Query: 186 FAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 245
                 L  ++   P    L  L L +  IY       KRF      ++ +  G      
Sbjct: 92  SLAL-FLSASYFLNPLAFILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGLAP-LA 145

Query: 246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK 305
            + A    +  SF   A +  I   V  +     +   + D E DRK  + ++  + G+K
Sbjct: 146 GWVAVIGTI--SFFLVAWLLGIG--VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIK 201

Query: 306 NIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKV 364
               + S   ++ ++  +L   Y+   +   + + A +++   L ++ ++++  + +K+
Sbjct: 202 AALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKI 257

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 25/106 (23%)

Query: 168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFA 227
           P+A+G +SV+ A   ++   +  L ++     P    L    L L   Y   PF MKR  
Sbjct: 78  PLASGAVSVRQAILFLLVQLLVALGVL-LQLNPLTILLGVASLALVATY---PF-MKRI- 131

Query: 228 VAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTL 273
                               Y  +  LGL+F W A + +      L
Sbjct: 132 -------------------TYWPQLVLGLAFGWGALMGWAAVTGDL 158

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 20/197 (10%)

Query: 141 LICGNGYIVGINQIYDIGIDKVNKPYLPIAAGD--LSVQSAWFLVIFFAVTGLLIVAFNF 198
           L   N ++ G+N ++D   D++N    P    +  +  +    +++  A++G L +AF  
Sbjct: 54  LFPANVFLYGVNDVFDADTDELN----PKKDREREVRYRGDRRVLVAVALSGALALAFLL 109

Query: 199 G-PFITSLYCLG-LFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGL 256
             P       L  L L   YS PP R K   V   L          + G+Y     A   
Sbjct: 110 VLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSL----------SNGLYILPGVAAYA 159

Query: 257 SFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL 316
               + P     A   L+A+ +     +PD+E DR   I T AT LG +      +   L
Sbjct: 160 LVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWL 219

Query: 317 LNYVAAILAAIYMPQAF 333
           L   AA  AA+ +    
Sbjct: 220 L--AAAAFAAVDLRLGA 234

Length = 282

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 28/188 (14%)

Query: 151 INQIYDIGIDKVNK--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYC- 207
           IN I+D  IDK        P+A+G LSV+ A  L+    +  L+I+         +    
Sbjct: 64  INDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLL------LNKTTI 117

Query: 208 -LGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALG-LSFE----WN 261
            L      +  + P  MKRF     L +    GF  N G+  A  A    L  E    + 
Sbjct: 118 YLSFIAVILIVLYPL-MKRFFYWPQLFL----GFTFNMGILMAFAAVQNQLDIEAILLYI 172

Query: 262 APVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 321
             + +   + T++A          D + D K  + + A   G K   ++    ++   + 
Sbjct: 173 GCIFWTIGYDTIYAYQ--------DKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILW 224

Query: 322 AILAAIYM 329
            IL  I  
Sbjct: 225 LILGIISS 232

Length = 285

>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 55/222 (24%), Positives = 86/222 (38%), Gaps = 25/222 (11%)

Query: 135 FSGLLALICGNGYIVGINQIYDIGIDKVN----KPYLPIAAGDLSVQSAWFLVIFFAVTG 190
             G  A  C     + +NQI D  IDK N       LP  A  LS+  +  L+   +   
Sbjct: 50  SLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLP--AKLLSINFSMLLLTLCSFLF 107

Query: 191 LLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVR--GFLLNFGVYY 248
           L +      P   SL  L   L  IY       KR       I+  V     L+NF  + 
Sbjct: 108 LSLCWL-LNPLCFSLAVLSTLLMIIYPY----TKRVTFLCHWILGLVYYLAILMNF--FA 160

Query: 249 ATRAALGLSFEWNAPVAFITAFVTLFALVIA---VTKDLPDVEGDRKFKISTLATKLGVK 305
                L  S    A +  I+     F ++IA   +   + D+E DRK  + ++  + G K
Sbjct: 161 IIETPLSFSLFCMASLWGIS-----FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEK 215

Query: 306 NIAFLGSGLLLLNYVAAILAAIYMP--QAFRRNLMIPAHVIL 345
               + S  L+ + +A +L   ++   + F    ++P  VIL
Sbjct: 216 KAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVIL 257

Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
PLN02922	315	prenyltransferase	99.97
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.96
PRK12871	297	ubiA prenyltransferase; Reviewed	99.96
PLN02776	341	prenyltransferase	99.96
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.95
PRK13591	307	ubiA prenyltransferase; Provisional	99.95
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.95
PRK13592	299	ubiA prenyltransferase; Provisional	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.94
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.85
PRK08238	479	hypothetical protein; Validated	99.82
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.52
KOG4581	359	consensus Predicted membrane protein [Function unk	99.24
PRK13595	292	ubiA prenyltransferase; Provisional	90.6
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	90.58
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	90.53
PRK12884	279	ubiA prenyltransferase; Reviewed	90.2
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	89.6
PRK13592	299	ubiA prenyltransferase; Provisional	89.56
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	88.22
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	87.24
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	86.97
PRK12872	285	ubiA prenyltransferase; Reviewed	86.83
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	86.63
PLN00012	375	chlorophyll synthetase; Provisional	86.21
PRK13591	307	ubiA prenyltransferase; Provisional	86.08
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.74
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	85.58
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	85.48
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	85.47
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	84.49
PRK12882	276	ubiA prenyltransferase; Reviewed	83.39
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	83.1
PRK12392	331	bacteriochlorophyll c synthase; Provisional	82.16
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	82.0
PRK05951	296	ubiA prenyltransferase; Reviewed	81.81
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	81.61
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	81.23
PRK13105	282	ubiA prenyltransferase; Reviewed	81.16
PRK12875	282	ubiA prenyltransferase; Reviewed	80.45

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.4e-47  Score=371.20  Aligned_cols=290  Identities=34%  Similarity=0.567  Sum_probs=242.7

Q ss_pred             CchhHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccccc
Q 017235           81 SDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGID  160 (375)
Q Consensus        81 ~~~~~~~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D  160 (375)
                      |+..+++..+++++|+|++|||+.+++.++++++...+....+..+++..+...+..+++..+++.+++++||++|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            56678899999999999999999999999988655433222222233323333333445566788888899999999999


Q ss_pred             ccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHH
Q 017235          161 KVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGF  240 (375)
Q Consensus       161 ~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~  240 (375)
                      ++|||+||+++|++|+++++.+.+++.++|+.++. ..|+..+.++.++.+++++||.||+|+||+|++++++++.+.|.
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~  160 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV  160 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence            99999999999999999999999999999988775 47888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHH
Q 017235          241 LLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYV  320 (375)
Q Consensus       241 ~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~  320 (375)
                      .+.+|.+.......+.+..++...++++++.++|+.++++.||++|+||||+.|+||+|+++|++++.+++..++.++|+
T Consensus       161 i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~  240 (308)
T PRK12887        161 IVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL  240 (308)
T ss_pred             HHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence            88888877654333333345566667788888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235          321 AAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  373 (375)
Q Consensus       321 ~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~  373 (375)
                      ..++.+......+...++..||++++.+++||...+|.+  +++++.+||||.
T Consensus       241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~i  291 (308)
T PRK12887        241 GMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQ--DKQAIAQFYQFI  291 (308)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc--cchHHHHHHHHH
Confidence            988887766666666667799999999999999999886  899999999984

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.3e-42  Score=328.80  Aligned_cols=241  Identities=35%  Similarity=0.542  Sum_probs=207.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHH
Q 017235          130 LLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFIT-SLYCL  208 (375)
Q Consensus       130 ~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~-~l~~l  208 (375)
                      .+...+.+++++++++.|++|+||++|+|+||+|||+||+|||++|+++++.++..+.++|+.++.. .|+..+ .....
T Consensus        21 ~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~-~g~~~l~~al~~   99 (280)
T PLN02878         21 FFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWI-VGSWPLFWALFV   99 (280)
T ss_pred             HHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HChHHHHHHHHH
Confidence            4444556778889999999999999999999999999999999999999999999999999988754 565433 33345


Q ss_pred             HHHhhhhccC--CCCCcccccchhHHHHHHHHHHHHHHHHHHHHH-hhhccCccchHHHHHHHHHHHHHHHHHHHHccCC
Q 017235          209 GLFLGTIYSV--PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR-AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLP  285 (375)
Q Consensus       209 ~~~l~~~YS~--pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~-~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~  285 (375)
                      ++++++.||.  ||+|+||+++++..+...+.|...++|.|...+ ..+|.+..++.++++.+++++++..+++++||++
T Consensus       100 ~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~  179 (280)
T PLN02878        100 SFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIP  179 (280)
T ss_pred             HHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCc
Confidence            6688999996  999999999998888878888877888776643 3445444555666666667888899999999999


Q ss_pred             ChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH
Q 017235          286 DVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVI  365 (375)
Q Consensus       286 D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~  365 (375)
                      |+||||+.|++|+|+++|++++.+++..++.++|+..++.+...+..+...++..||++++..+++|...+|.  +++++
T Consensus       180 DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~--~sk~~  257 (280)
T PLN02878        180 DVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDL--SSKAA  257 (280)
T ss_pred             CchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCc--ccHHH
Confidence            9999999999999999999999999999999999988888888888888889999999999999999999997  49999


Q ss_pred             HHHHHHhc
Q 017235          366 LATCCTLG  373 (375)
Q Consensus       366 ~~~f~~~~  373 (375)
                      +.+||||.
T Consensus       258 i~~fY~fi  265 (280)
T PLN02878        258 ITSFYMFI  265 (280)
T ss_pred             HHHHHHHH
Confidence            99999984

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.3e-37  Score=295.09  Aligned_cols=261  Identities=16%  Similarity=0.198  Sum_probs=200.5

Q ss_pred             HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCc
Q 017235           91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLP  168 (375)
Q Consensus        91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RP  168 (375)
                      ++++|+|++||++.......+.   .+++++.++.+++..++..+++ ..+..+++|+  +||+.|+|+|++|+|  +||
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~---~g~~lA~~~~~~~~~l~l~~~~-~~~~rsag~~--~Ndi~Dr~iD~~~~RT~~RP   75 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFIL---AGYVIAAGHYIHPIKILLILIA-AVSARTSAMS--INRIEGLRYDMINPRKKDWA   75 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhcccCCCCcCCCCC
Confidence            3678999999999765444444   3444554443454444333333 2356778887  999999999999965  799


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235          169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY  248 (375)
Q Consensus       169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~  248 (375)
                      +|+|++|++||+.+.+++.++++.++ ...|+.++.+......+...|+    .+||++.++|+++|...|+ .++++|.
T Consensus        76 LpsG~is~~~A~~~~~~~~~~~~~~~-~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~-~~l~g~~  149 (286)
T PRK12895         76 LVSGRIKMREAIAFTIIFIAIFEICT-FLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGL-GVLAGYL  149 (286)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHh-HHHHHHH
Confidence            99999999999999999988887654 4578888777766666666776    7999999999999999996 6777787


Q ss_pred             HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235          249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  328 (375)
Q Consensus       249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~  328 (375)
                      +.++.    +++....+++.+..++|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.++.......++.
T Consensus       150 Av~g~----~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~  225 (286)
T PRK12895        150 AVIPA----FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIY  225 (286)
T ss_pred             HHcCC----CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            76542    23323333456677899999999999999999999999999999999999988888888887777777755


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHH-HHHHHhc
Q 017235          329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVIL-ATCCTLG  373 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~~f~~~~  373 (375)
                      .. +   ..|+++.++.+.+++|||..++++  |++++ ..|++-+
T Consensus       226 ~~-~---~~y~~~~~~~~~~l~~q~~~~~~~--~~~~~~~~~F~~N  265 (286)
T PRK12895        226 IR-T---LWYLAALIIIYTLVIYQHLIIDPR--NPINKRMSFFNAN  265 (286)
T ss_pred             Hh-h---HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHc
Confidence            43 2   356688888899999999999876  55666 5666544

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.8e-36  Score=291.47  Aligned_cols=267  Identities=16%  Similarity=0.155  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--C
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--Y  166 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~  166 (375)
                      +.++++|++++||++..++.+...+...+++++.++.+++..++..+++. .+.++++|+  +||++|+|+|++|+|  +
T Consensus         6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg~-~~~~~a~~~--~Nd~~D~~iD~~~~Rt~~   82 (290)
T PRK12870          6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILGA-LATSAAGCV--VNDLWDRDIDPQVERTRF   82 (290)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHHhccCCCCCcccC
Confidence            45788999999999998887666555555555544456665554333332 345778887  999999999998764  6


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 017235          167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV  246 (375)
Q Consensus       167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~  246 (375)
                      ||+|+|++|++|++.+..++.++++.++. ..|+.++.+...+.++.++||    ..||++.+++++.|+..|+ .++++
T Consensus        83 RPL~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l~g  156 (290)
T PRK12870         83 RPLASRRLSVKVGIVIAIVALLCAAGLAF-FLNPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIAWGF-AVLIS  156 (290)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHHHHh-HHHHH
Confidence            99999999999999999999988887664 468888877777788888998    5899999999999988886 46677


Q ss_pred             HHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHH
Q 017235          247 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA  326 (375)
Q Consensus       247 ~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~  326 (375)
                      |.+.++.    .+  ...+++.+..++|+.++++++++||+|+|+++|+||+|+++|++++.++.. ++.+........+
T Consensus       157 ~~a~~g~----~~--~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~  229 (290)
T PRK12870        157 WSAVTGH----LD--LGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILG  229 (290)
T ss_pred             HHHHcCC----CC--HHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHH
Confidence            7766542    22  333456677889999999999999999999999999999999998887776 4444444444555


Q ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhcc
Q 017235          327 IYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  374 (375)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~  374 (375)
                      +....++   .|.++..+.+..+.||+..+++++++++.+.++++.+-
T Consensus       230 ~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~  274 (290)
T PRK12870        230 VLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNV  274 (290)
T ss_pred             HHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhh
Confidence            5544332   34466777788999999999888889999999988654

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.9e-35  Score=284.20  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC-
Q 017235           87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-  165 (375)
Q Consensus        87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p-  165 (375)
                      ..+.++++|+|++||++.++...+...   +++++.++.+++..++..+++. .++.+++|+  +||++|+|+|++|+| 
T Consensus        10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~---g~~la~~~~~~~~~l~l~~lg~-~l~~~a~~~--~Nd~~D~diD~~~~RT   83 (300)
T PRK13106         10 NTRSKFYIILRFLRIEQTFFSLPMAYL---GAFVAIKGIPPISTLILIFLAL-FFLRTAGMT--NDNLADLEIDAKNPRT   83 (300)
T ss_pred             hhHHHHHHHHHHHccccHHHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHH--HHhhHHhccccCCCcc
Confidence            356689999999999999877665543   3344444456665554333332 356777777  999999999999965 


Q ss_pred             -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235          166 -YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  244 (375)
Q Consensus       166 -~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~  244 (375)
                       +||+|+|++|++|++.+..++.+.+++++ ...|+.+..+..++.++.+.|+    .+||++.++|+++|+..|+.+..
T Consensus        84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~-~~ln~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~~~  158 (300)
T PRK13106         84 KNRPLVTGAIKISEAKALITAGLILFFASA-YLVNRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGLAVFS  158 (300)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHHHH
Confidence             79999999999999988766555555443 4578887777777777778898    69999999999999999986444


Q ss_pred             HHHHHHHhhhccCc--cchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHH
Q 017235          245 GVYYATRAALGLSF--EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA  322 (375)
Q Consensus       245 g~~~a~~~~~g~~~--~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~  322 (375)
                       ++.+.++....+.  ....+.+++.+..++|+.++|++|++||+|+|++.|+||+|+++| +++++++..++.++.++.
T Consensus       159 -G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~  236 (300)
T PRK13106        159 -GAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLD  236 (300)
T ss_pred             -HHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHH
Confidence             4555543221110  011222334456679999999999999999999999999999999 889999998988888888


Q ss_pred             HHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017235          323 ILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERA  359 (375)
Q Consensus       323 i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~  359 (375)
                      +..++....++   .|+++..+.+.++.||+..++++
T Consensus       237 ~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~  270 (300)
T PRK13106        237 LLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK  270 (300)
T ss_pred             HHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc
Confidence            87777665543   45677778889999999999775

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.2e-35  Score=283.21  Aligned_cols=268  Identities=21%  Similarity=0.193  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CC
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YL  167 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~R  167 (375)
                      +++++|++++||+++.++.+.......+.+++.++.+++..++..+++ .+++.+++|+  +||+.|+|+|++|+|  +|
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~g-~~l~~~a~~~--~Nd~~D~~iD~~~~RT~~R   81 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILG-GLAVSGAGCI--ANDLWDRRIDRKVERTKNR   81 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHHH-HHHHHHHHHH--HHHHHHHhhccCCCcCCCC
Confidence            457899999999999988888776666655654444555544433332 3466777777  999999999999986  69


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235          168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFN---FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  244 (375)
Q Consensus       168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~~---~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~  244 (375)
                      |+|+|++|+++|+.+.+++.++++.+....   .|+.+..+..++++...+||    .+||++.+++++.|+..++ +++
T Consensus        82 Pl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~~a~-~~l  156 (294)
T PRK12873         82 PLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALCWGF-AVL  156 (294)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHHHHh-HHH
Confidence            999999999999999999988888765432   36777777777777888998    6999999999888887554 677


Q ss_pred             HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235          245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  324 (375)
Q Consensus       245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~  324 (375)
                      ++|.+.++.+    ++....+++.+..++|+.++|++++++|+|+|+++|++|+|+++|+ ++..+...++.++.+++..
T Consensus       157 ~gw~Av~g~~----~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~  231 (294)
T PRK12873        157 IPWAAAEGSL----NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLAL  231 (294)
T ss_pred             HHHHHHhCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHH
Confidence            7888776532    3333334445677899999999999999999999999999999997 4666667777888877777


Q ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235          325 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  373 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~  373 (375)
                      .++..+.++   .|.++.++.+.++.|||..+++++..+++|-+.++-+
T Consensus       232 ~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n  277 (294)
T PRK12873        232 AAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQ  277 (294)
T ss_pred             HHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhc
Confidence            787766553   4557777888999999999998755578887776644

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.4e-35  Score=280.67  Aligned_cols=259  Identities=16%  Similarity=0.160  Sum_probs=193.7

Q ss_pred             HHHHHHHHchhhHHHHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCc
Q 017235           92 RDACWRFLRPHTIRGTALGSV-ALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLP  168 (375)
Q Consensus        92 l~~~~~l~Rp~~~~g~~l~~~-~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RP  168 (375)
                      +++++|++||+|.+.....+. +.+++...+ ++.+++..++..+++. .+..+++|+  +||++|+|+|++|+|  +||
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFAS-DGSVHWADLLLVTVAM-VGARTFAMA--ANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHhhCCCCCCCCCCCCC
Confidence            678999999999764333222 222222222 3446665554333332 345677777  999999999999985  799


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235          169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY  248 (375)
Q Consensus       169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~  248 (375)
                      +|+|++|++|++.+.+.+..+++.++ ...|+.++.+..++++..+.|+    ..||++.+++++.|+..++ .++++|.
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~~-~~l~g~~  151 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAA-ALLNPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQAV-GPVGAWI  151 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHHH-HHHHHHH
Confidence            99999999999998887776666554 3468887777777777778997    7899999999999988665 4667787


Q ss_pred             HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235          249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  328 (375)
Q Consensus       249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~  328 (375)
                      ++++.    .+  +..+++.+..++|+.+++++|++||+|+|++.|+||+|+++|++++.++...++.+.+++.+..++.
T Consensus       152 a~~g~----~~--~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~  225 (284)
T PRK12888        152 AVTGT----WS--WPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA  225 (284)
T ss_pred             HHcCC----CC--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77542    22  3444566778899999999999999999999999999999999999998888887887777776766


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHH-HHHHH
Q 017235          329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVIL-ATCCT  371 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~~f~~  371 (375)
                      ...++   .|+++..+.+.+++|||..++++  |++.+ +.|++
T Consensus       226 ~~~~~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~  264 (284)
T PRK12888        226 VGFGA---LWWIGLAITAGAFAYEHAIVSPT--DLSRVNRAFFT  264 (284)
T ss_pred             hCCcH---HHHHHHHHHHHHHHHHHHHcCcc--CHHHHHHHHHH
Confidence            55553   34567778889999999999876  44444 35553

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=8.6e-35  Score=280.68  Aligned_cols=267  Identities=19%  Similarity=0.140  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHH-HHc-CCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC-
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARA-LIE-NPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-  165 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a-~~~-~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p-  165 (375)
                      +.++++|+|++|.+++.++.+..+....+. +.+ .++.+++..++..+++. .++++++|+  +||++|+|+|++|+| 
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~-~~~~~a~~~--~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGA-LLLRGAGCT--INDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HHHHHHHHH--HHhhHHhccccCCCCC
Confidence            357889999999999998887775433333 333 23345665444333332 355677777  999999999999874 


Q ss_pred             -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235          166 -YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  244 (375)
Q Consensus       166 -~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~  244 (375)
                       +||+|+|++|++||+.+..++.++++.++. ..|+.++.+..++.++.++||    .+||++.+++++.|+..++ .++
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l  153 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGLTFNW-GAL  153 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHHHHHH-HHH
Confidence             799999999999999999988888887654 458888888878888888998    6999999999988877665 456


Q ss_pred             HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235          245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  324 (375)
Q Consensus       245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~  324 (375)
                      ++|.+.++..    ++. ..+.+....++|+.++++++++||+|+|+++|+||+|+++|+++..++.. ++.+++..+..
T Consensus       154 ~g~~av~g~~----~~~-~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~  227 (289)
T PLN02809        154 LGWAAVKGSL----DPA-VVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLAL  227 (289)
T ss_pred             HHHHHHhCCC----ChH-HHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHH
Confidence            6676665422    222 22224556678999999999999999999999999999999996666664 66667777666


Q ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235          325 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      .++....++   .+.+++++.+.+++||+..+|++  ++++|.+.|+.+.|
T Consensus       228 ~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~--~~~~~~~~F~~n~~  273 (289)
T PLN02809        228 SGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLS--SRADCNRKFVSNKW  273 (289)
T ss_pred             HHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCCH
Confidence            666554432   34568888899999999999886  67788887776543

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1e-34  Score=280.13  Aligned_cols=266  Identities=20%  Similarity=0.203  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--  165 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~-~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--  165 (375)
                      .+++++|++++||+++.++.+...+...+..++.++. +++..++..+++. .++++++|+  +|||+|+|+|++|+|  
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~ll~~l~~-~l~~~a~~~--~Nd~~D~~iD~~~~Rt~   80 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGS-VLMRSAGCI--INDIFDRKIDKHVARTK   80 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHH-HHHHHHHHH--HHhHHHhhhccCCCccc
Confidence            4568899999999998876665555445555543333 5555444333332 355677777  999999999998774  


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235          166 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  245 (375)
Q Consensus       166 ~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g  245 (375)
                      +||+++|++|++|++.+..++.++++.++. ..|+.++.+++++.++.++||    ..||++.+++++.|+..|+ .+++
T Consensus        81 ~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~l~  154 (285)
T PRK12847         81 NRPLASGALSVKQALILLFILLLIALVILL-LLNKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTFNM-GILM  154 (285)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHHHH-HHHH
Confidence            799999999999999999999888887764 468888888888888889998    5999999999998888775 4666


Q ss_pred             HHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHH
Q 017235          246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA  325 (375)
Q Consensus       246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~  325 (375)
                      +|.+.++.    ++  ...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++.....+..+...++ 
T Consensus       155 ~~~a~~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-  227 (285)
T PRK12847        155 AFAAVQNQ----LD--IEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-  227 (285)
T ss_pred             HHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-
Confidence            77766532    22  344556777889999999999999999999999999999999999999888776555555443 


Q ss_pred             HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235          326 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      ++......  .++ .+.++....+.+++..++.+  +++.+.+.++.++|
T Consensus       228 ~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~  272 (285)
T PRK12847        228 GIISSLHN--IFY-LAILAAAGIFYYQYKLLDFD--NPANCMYAFKANHY  272 (285)
T ss_pred             HHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhHH
Confidence            33222211  122 34445566888898877654  56778888887764

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.7e-35  Score=278.99  Aligned_cols=264  Identities=20%  Similarity=0.252  Sum_probs=190.5

Q ss_pred             HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccc
Q 017235           91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA  170 (375)
Q Consensus        91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~  170 (375)
                      .+++|++++||++...+.++...+.   +++.+...++..++..+++ ..+..+++|+  +||++|+|+|++|+|+||++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~---~~a~~~~~~~~~~~l~~l~-~~l~~~~~~~--~Nd~~D~~iD~~~~~~Rpl~   76 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGA---FIAGGILSSPSLTGLAFAA-VFLATGAGNA--INDYFDREIDRINRPDRPIP   76 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHH---HHhccccchHHHHHHHHHH-HHHHHHHHHH--HHHHhhhccccccCCCCCcC
Confidence            3689999999999987777666443   3333322333222222222 2355677777  99999999999999999999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 017235          171 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT  250 (375)
Q Consensus       171 sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~  250 (375)
                      +|++|++|++.++.++.++|++++. ..|+....+..++.++.++||.   ++||++.+||+++|...|..+.+|.....
T Consensus        77 ~G~is~~~a~~~~~~l~~~g~~~~~-~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~  152 (276)
T PRK12882         77 SGAVSPRGALAFSILLFAAGVALAF-LLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVG  152 (276)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999987765 3688877777777788889985   89999999999999988887665543221


Q ss_pred             HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017235          251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMP  330 (375)
Q Consensus       251 ~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~~  330 (375)
                           .. .+ ...+.+.+..++|+.+++++||++|+|+|+++|+||+|+++|+|++.++...++++.........+...
T Consensus       153 -----~~-~~-~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~  225 (276)
T PRK12882        153 -----TE-GL-LALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLST  225 (276)
T ss_pred             -----cc-ch-HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11 11 222345566678889999999999999999999999999999999999887776665554433222222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235          331 QAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       331 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      .+   ..|++..++....+++..++... +++++.+++.++++||
T Consensus       226 ~~---~~y~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~f~~~~~  266 (276)
T PRK12882        226 FG---LWYLVLVAPADLVMLAAAYRSLK-KTDPTASQKLLKYGMF  266 (276)
T ss_pred             hh---HHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence            22   23455555555555554443322 2367889999999886

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.2e-34  Score=278.81  Aligned_cols=247  Identities=26%  Similarity=0.372  Sum_probs=185.6

Q ss_pred             HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccc
Q 017235           91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA  170 (375)
Q Consensus        91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~  170 (375)
                      ++++|++++||++...+.++...+.   .++.+..+++..++..+++ ..+..+++|+  +||++|+|+|++|+|+||++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~---~la~~~~~~~~~~~l~~l~-~~l~~~~~~~--iNd~~D~~iD~~~~~~Rpl~   75 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGY---LIASNFKIDLKGIILAALV-VFLVCAGGNV--INDIYDIEIDKINKPERPIP   75 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHH---HHHccCCcchHHHHHHHHH-HHHHHHHHHH--HHhhcccccccccCCCCCcC
Confidence            3678999999999988877666443   3333333455444333333 2355677777  99999999999999999999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 017235          171 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT  250 (375)
Q Consensus       171 sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~  250 (375)
                      +|++|+++++.++.++.++++.++.. .|+.+..+++++.++.++||.   ++||++.+||+++|...|..+..|. .+.
T Consensus        76 sG~is~~~a~~~~~~l~~~~~~l~~~-l~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~-~~~  150 (279)
T PRK09573         76 SGRISLKEAKIFSITLFIVGLILSIF-INIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG-LAV  150 (279)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH-HHH
Confidence            99999999999999999999877653 688888888888888899984   7999999999999999999765554 333


Q ss_pred             HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017235          251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMP  330 (375)
Q Consensus       251 ~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~~  330 (375)
                      ++      .  ...+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++.++.....++......+......
T Consensus       151 ~~------~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~  222 (279)
T PRK09573        151 FN------V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGI  222 (279)
T ss_pred             cc------c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21      1  122334556678899999999999999999999999999999999999887776666655543322221


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017235          331 QAFRRNLMIPAHVILASCLLFQTWLLERA  359 (375)
Q Consensus       331 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~  359 (375)
                      .+   .+|+++..+.+..++++..+.-++
T Consensus       223 ~~---~~y~~~~~~~~~~~l~~~~~~~~~  248 (279)
T PRK09573        223 FG---IYYLIVVIICDILFIIAMLILLKN  248 (279)
T ss_pred             HH---HHHHHHHHHHhHHHHHHHHHHHcC
Confidence            22   245666767778888887766443

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.9e-34  Score=276.55  Aligned_cols=266  Identities=18%  Similarity=0.159  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH-Hc-CCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC
Q 017235           86 NKVSAFRDACWRFLRPHTIRGTALGSVALVARAL-IE-NPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN  163 (375)
Q Consensus        86 ~~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~-~~-~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n  163 (375)
                      ++.++++++|+|++||++.+.+...+..+...+. .. .++.+++..++..+++. .+..+++|+  +||++|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILAA-VSARNFAMA--FNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHH-HHHHHHHHH--HHhhhhhccccCC
Confidence            4567789999999999999877766654432221 11 12345666554333332 245666666  9999999999999


Q ss_pred             CC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHH
Q 017235          164 KP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL  241 (375)
Q Consensus       164 ~p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~  241 (375)
                      +|  +||+|+|++|++|++.+.+++.++++.++. ..|+.+..+.+..++....||    .+||++.+++++.|+..|+.
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~~n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g~~~~~~  153 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSY-FINPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLGLSLGLA  153 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHh----hhcccccccHHHHHHHHHHH
Confidence            85  799999999999999999888877766554 468887777666666788999    69999999999999987764


Q ss_pred             HHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHH
Q 017235          242 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA  321 (375)
Q Consensus       242 ~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~  321 (375)
                       ++.+|.+.++.    ++  ...+++.+..++|+.+++++|+++|+|+|+++|+||+|+++|++++.++...++....+.
T Consensus       154 -~l~G~~av~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~  226 (291)
T PRK12874        154 -PIAGVVAVLGE----IP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLF  226 (291)
T ss_pred             -HHHHHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHH
Confidence             55567666542    22  222345567789999999999999999999999999999999999988877666655555


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 017235          322 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCT  371 (375)
Q Consensus       322 ~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~  371 (375)
                      ....++....++   +++++..+.+..+.+|+..++.+  +++.++.|+.
T Consensus       227 ~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~ff~  271 (291)
T PRK12874        227 WLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKD--FKKIDKAFFT  271 (291)
T ss_pred             HHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence            544444333332   34566767778888998888543  3446666654

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=7.6e-35  Score=280.70  Aligned_cols=222  Identities=22%  Similarity=0.245  Sum_probs=168.4

Q ss_pred             HHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcccc
Q 017235           93 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA  171 (375)
Q Consensus        93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~-~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~s  171 (375)
                      ++|++++||+++.....++..+.+.+- ..++. .+|...+...+....++.+++|+  +|||+|+|+|++|+|+||+++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~-~~~~~~~~~~~~ll~~~~~~~l~~~~~n~--~Nd~~D~~~D~~~~~~Rpi~~   77 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASG-YERGFPEHWWLMLLGMLMAGPLGTGFSQS--INDYFDRDVDAINEPQRPIPS   77 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhcc-CCCCcchhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhCcccCCCCCCCCCC
Confidence            468899999999888877775543220 11222 34443322111112245666776  999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 017235          172 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR  251 (375)
Q Consensus       172 G~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~  251 (375)
                      |++|+++++.+.+++.+++++++....++....+++++.+++++||.||+++||++++|++.++...|..+..+++.+..
T Consensus        78 G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~  157 (283)
T TIGR01476        78 GIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA  157 (283)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999988888877654444435666677888999999999999999899999998877766555554331


Q ss_pred             hhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235          252 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  324 (375)
Q Consensus       252 ~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~  324 (375)
                           .  +++..++.++..++++.+++++||++|+|+|+++|+||+|+++|+|++++++..+..++++..+.
T Consensus       158 -----~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       158 -----P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             -----C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence                 1  23344445667778899999999999999999999999999999999999998877777765553

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=2e-34  Score=277.71  Aligned_cols=259  Identities=16%  Similarity=0.214  Sum_probs=194.2

Q ss_pred             HHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CCCcc
Q 017235           92 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPI  169 (375)
Q Consensus        92 l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~RPl  169 (375)
                      +++|+|++||++..+..+.+.+   +++++.++.+++..++..+++. .++.+++|+  +||++|+|+|++|+  |+||+
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~---g~~la~~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYA---GALLAAKGLPGLKTLILILIAA-VSARTAAMA--FNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHH---HHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHH--HHHHHHHcccCCCCccCCCCC
Confidence            6799999999998876555443   3344434456665554333332 355677777  99999999999994  58999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 017235          170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA  249 (375)
Q Consensus       170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a  249 (375)
                      ++|++|+++++.+.+++.+++++++ ...|+.+..++.++.++.++|+    .+||++.+++++.|...|. +++++|.+
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~~~g~~a  149 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSAS-YFLNPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGL-APLAGWVA  149 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHH-HHHHHHHH
Confidence            9999999999999887776666554 3467777777777777788998    6899999999999988776 45666777


Q ss_pred             HHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017235          250 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM  329 (375)
Q Consensus       250 ~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~  329 (375)
                      .++..    +.....+++.+..++|+.+++++||+||+|+|+++|+||+|+++|+|++.++...+..+++....+.++..
T Consensus       150 ~~g~~----~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  225 (282)
T TIGR01475       150 VIGTI----SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYV  225 (282)
T ss_pred             HhCCc----cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65422    21133344566778999999999999999999999999999999999999998888888887777666655


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHH-HHH
Q 017235          330 PQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILAT-CCT  371 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-f~~  371 (375)
                      +.++   .+.++..+.+..+.+++...+++  +++++++ |+.
T Consensus       226 ~~g~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~  263 (282)
T TIGR01475       226 GNGY---IALLALILIGLILAYEHYIVDPG--DQSKIQRAFFY  263 (282)
T ss_pred             hCcH---HHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence            4443   45566667778888898877754  5566655 444

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=5.9e-34  Score=279.29  Aligned_cols=254  Identities=22%  Similarity=0.270  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCC-CCcHHHHH--HHHHHHH-HHHHHhhhhhhccccccccccccC
Q 017235           88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPN-LIKWSLLL--KAFSGLL-ALICGNGYIVGINQIYDIGIDKVN  163 (375)
Q Consensus        88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~-~~~~~~ll--~~l~~~v-~lv~a~~~v~~iNd~~D~~~D~~n  163 (375)
                      ..+++|+|++++||+++... ++...+  ++ ++.++ .+++..+.  .....+. .+..+++++  +|||+|+|+|++|
T Consensus         8 ~~~~~k~~l~L~kP~t~l~~-~p~~~g--~~-lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~--iND~~D~~~D~~n   81 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWISV-FPCLAG--GV-MASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS--VNDYFDLELDRVN   81 (331)
T ss_pred             hhHHHHHHHHHHCHHHHHHH-HHHHHH--HH-HHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhH--HhcceeecccccC
Confidence            35568899999999988733 333322  22 33221 12222211  1111111 233445566  9999999999999


Q ss_pred             CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHH
Q 017235          164 KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNF-------GPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIAT  236 (375)
Q Consensus       164 ~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~-------~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~  236 (375)
                      +|+||+++|++|+++++.+.+++.+++++++.+..       ++..+..++++++++++||.||+++||+++.++..+|+
T Consensus        82 ~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl  161 (331)
T PRK12392         82 EPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGF  161 (331)
T ss_pred             CCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHH
Confidence            99999999999999999999998888887765321       12223334567788999999999999998889999998


Q ss_pred             HHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHH
Q 017235          237 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL  316 (375)
Q Consensus       237 ~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l  316 (375)
                      ..|+....+. .+..   +   +.++..+++++..++|+.+++++||++|+|+|++.|+||+|+++|++++.++....+.
T Consensus       162 ~~~~~~~~~~-~a~~---g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~  234 (331)
T PRK12392        162 SYGFITFLSA-NALF---S---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIID  234 (331)
T ss_pred             HHHHHHHHHH-HHHh---c---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHH
Confidence            8887554433 2322   2   1234444566777899999999999999999999999999999999999998887766


Q ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 017235          317 LNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLE  357 (375)
Q Consensus       317 ~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~  357 (375)
                      ++.+..+..++...+++   .+....++++.++.+|....+
T Consensus       235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~r  272 (331)
T PRK12392        235 LVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLYR  272 (331)
T ss_pred             HHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHh
Confidence            67666666666555443   233445566777888887654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.6e-34  Score=275.55  Aligned_cols=264  Identities=20%  Similarity=0.206  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--
Q 017235           88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--  165 (375)
Q Consensus        88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--  165 (375)
                      +.+++++|+|++||++......+...+   ++++.++.+++..++..+++. .+..+++|+  +||++|+|+|++|+|  
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g---~~lA~~~~~~~~~l~~~~l~~-~l~~~a~~~--~Nd~~D~~iD~~~~RT~   77 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIG---AVLAALGLPGASQLDWILMAM-VGARTAAMG--FNRLIDAEIDARNPRTA   77 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHH---HHHhccCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHhhccCCCCCCCC
Confidence            456788999999999987665555433   334433445554444333332 355677777  999999999999985  


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235          166 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  245 (375)
Q Consensus       166 ~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g  245 (375)
                      +||+++|++|++|++.+...+.++++. .....|+.+..+.+++.++.+.||    .+||++.+++++.|+..++ ++++
T Consensus        78 ~RPL~sG~is~~~A~~~~~~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~-~~l~  151 (291)
T PRK12886         78 GRAIPAGLISKGSAILFIVLSSLLMLF-AAWFLNPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLAL-APLG  151 (291)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHH-HHHH
Confidence            699999999999998886555554443 334578888777777777788999    5899999999988887554 5677


Q ss_pred             HHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHH
Q 017235          246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA  325 (375)
Q Consensus       246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~  325 (375)
                      +|.+.++.    ++  .+.+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++...+..+.+...+..
T Consensus       152 g~~a~~g~----~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~  225 (291)
T PRK12886        152 AWIAIRGT----IE--LPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFAL  225 (291)
T ss_pred             HHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHH
Confidence            88877542    22  3334566677899999999999999999999999999999999999998877777777766665


Q ss_pred             HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235          326 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  373 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~  373 (375)
                      ++....++   .|.++.++.+..+++|++..++++. ++.++++|+.+
T Consensus       226 ~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~F~~~  269 (291)
T PRK12886        226 GISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDL-TRLDAAFFNMN  269 (291)
T ss_pred             HHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHh
Confidence            55443332   4556666777888889888875421 34566766544

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=1.2e-33  Score=280.83  Aligned_cols=217  Identities=23%  Similarity=0.324  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHH------HHHHHHHHHHHHHHhhhhhhcccccccccccc
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL------LLKAFSGLLALICGNGYIVGINQIYDIGIDKV  162 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~------ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~  162 (375)
                      .+.+++|++++||+++....++++.+.+   . .++ ++|..      ++..++ ...++.+++|+  +|||+|+|+|++
T Consensus        82 ~~~~k~~l~L~RP~t~~~~~~~v~~G~~---~-~g~-~~~~~~~~~~~ll~~ll-~~~L~~~~an~--iNDy~D~~iD~~  153 (375)
T PLN00012         82 TDIWKIRLQLTKPVTWPPLVWGVLCGAA---A-SGN-FHWTLEDVAKSIVCMLM-SGPFLTGYTQT--INDWYDREIDAI  153 (375)
T ss_pred             hHHHHHHHHHhCHHHHHHHHHHHHHHHH---H-cCC-CCchhhhHHHHHHHHHH-HHHHHHHHHHH--HHCeecHhhhcc
Confidence            4567899999999999888887775543   2 222 33432      111111 12345566666  999999999999


Q ss_pred             CCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHH
Q 017235          163 NKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIAT  236 (375)
Q Consensus       163 n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~------~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~  236 (375)
                      |+|+||+++|++|+++++.+.+++.++++.++.+.      .++..+.+++++++++++||.||+++||++++||+.+|.
T Consensus       154 ~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~  233 (375)
T PLN00012        154 NEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGA  233 (375)
T ss_pred             CCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHH
Confidence            99999999999999999987766666666555432      256667777778888999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHH
Q 017235          237 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL  316 (375)
Q Consensus       237 ~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l  316 (375)
                      ..|..+.++++ +..+      .+++..++++++.++|+.+++++||++|+|+|+++|++|+||++|++++++++..++.
T Consensus       234 ~~~~lp~~~g~-a~~g------~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~  306 (375)
T PLN00012        234 SYISLPWWAGQ-ALFG------TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID  306 (375)
T ss_pred             HHHHHHHHHHH-HHcC------CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence            88876666555 3322      2334445566777899999999999999999999999999999999999998875554


Q ss_pred             HHHH
Q 017235          317 LNYV  320 (375)
Q Consensus       317 ~a~~  320 (375)
                      +..+
T Consensus       307 l~~l  310 (375)
T PLN00012        307 ITQL  310 (375)
T ss_pred             HHHH
Confidence            4443

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.3e-34  Score=274.85  Aligned_cols=266  Identities=17%  Similarity=0.167  Sum_probs=194.5

Q ss_pred             HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcC------CC---CCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccc
Q 017235           91 FRDACWRFLRPHTIRGTALGSVALVARALIEN------PN---LIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDK  161 (375)
Q Consensus        91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~------~~---~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~  161 (375)
                      +.+.|.|+.|.+|   ++++....+++++++.      .+   .++|..++...+++ ...++++|+  +||++|+|+|+
T Consensus         3 ~~~~~~~~i~~~h---t~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~Rsag~~--~Nd~~DrdiD~   76 (300)
T PRK12876          3 RIKYFQQLINCKY---ALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAF-FCARTVGII--VNQIIDCAIDK   76 (300)
T ss_pred             hHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHH-HHHHHHHHH--HHhHHHhcccC
Confidence            4778899999888   3455554444555542      34   56777665444333 245677777  99999999999


Q ss_pred             cCCC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHH
Q 017235          162 VNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRG  239 (375)
Q Consensus       162 ~n~p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G  239 (375)
                      +|+|  +||+|+|++|++||+.+.+++.++++++ ....|+.+..+..+++++.++||    ++||+++++|++.|+..+
T Consensus        77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l-~~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~  151 (300)
T PRK12876         77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSL-CWLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYY  151 (300)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHH
Confidence            9996  7999999999999999987665555544 34579998888888888888998    699999999999998877


Q ss_pred             HHHHHHHHHHHHhhhccCccchH--HHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHH
Q 017235          240 FLLNFGVYYATRAALGLSFEWNA--PVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL  317 (375)
Q Consensus       240 ~~~~~g~~~a~~~~~g~~~~~~~--~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~  317 (375)
                      + .++++|.+..+.   +..+..  ..++.++..++|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.+
T Consensus       152 ~-~~l~~~~Av~~~---~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l  227 (300)
T PRK12876        152 L-AILMNFFAIIET---PLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA  227 (300)
T ss_pred             H-HHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence            6 566677665431   112211  2223455667888899999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH-HHHH-HhhccCCCCHHHHHHHHHhccC
Q 017235          318 NYVAAILAAIYMPQAFRRNLMIPAHVILASCL-LFQT-WLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       318 a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l-~~~~-~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      +.+...+.++..+.++  .+++.+.++.+..+ .+|| ..++  +++++.+.+||+.+.|
T Consensus       228 ~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~F~~N~~  283 (300)
T PRK12876        228 SAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLID--KKKSTLEQKFFLGNIY  283 (300)
T ss_pred             HHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHhcCH
Confidence            8877777776655553  23555555444444 5666 5563  3467788888877654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=6.3e-34  Score=275.11  Aligned_cols=271  Identities=23%  Similarity=0.277  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC
Q 017235           85 LNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK  164 (375)
Q Consensus        85 ~~~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~  164 (375)
                      .++..++++.+.+++|+++++++.....+.+.+...+..+.+++..++.+.++ +.+..+++|+  +||++|+|+|++|+
T Consensus         3 ~~~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~ag~~--iND~~D~eiD~~n~   79 (289)
T COG0382           3 MMSLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLA-FFLARSAGYV--INDLADREIDRINP   79 (289)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHhHH--HHHHhhhhccCCCC
Confidence            34556777888888888888877776665555555544344443333322222 2344566666  99999999999999


Q ss_pred             C--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHH
Q 017235          165 P--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL  242 (375)
Q Consensus       165 p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~  242 (375)
                      |  +||+|+|++|+++++.+.+++.++++.+++ ..|+..+.+...+.++.+.|+    ++||++.++|+++|...|+.+
T Consensus        80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~  154 (289)
T COG0382          80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALAL-LLNPLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGA  154 (289)
T ss_pred             CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHH
Confidence            9  899999999999999999999998887764 578888888888889999994    899999999999999999876


Q ss_pred             HHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHH
Q 017235          243 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA  322 (375)
Q Consensus       243 ~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~  322 (375)
                      ..|.. +..+      +...+.+++.+..++|+.+++++||++|+|+||+.|+||+|+.+|++++..++...+ ...+..
T Consensus       155 ~~g~~-a~~~------~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~  226 (289)
T COG0382         155 LAGAA-AVGG------SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALL  226 (289)
T ss_pred             HHHHH-HHhC------ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHH
Confidence            66543 3321      123444566778889999999999999999999999999999999999999998887 333333


Q ss_pred             HHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235          323 ILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       323 i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      ...++......  ..++.++.+.+..+++|+..++.+  ++..+..+++.+|+
T Consensus       227 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  275 (289)
T COG0382         227 VLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVR--DPPACFALFDVNLL  275 (289)
T ss_pred             HHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhccc--ChHHHHHHHHHhhH
Confidence            33443332221  256778888889999999999876  77788888887764

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=9.5e-34  Score=272.99  Aligned_cols=264  Identities=17%  Similarity=0.162  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CC
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YL  167 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~R  167 (375)
                      +++++|+|++|++++.++.+...+...+..++.++.+++..++..+++. .+.++++|+  +||++|+|+|++|+|  +|
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~~~~l~~~g~-~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~R   79 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVVFVLGV-FLMRAAGCV--INDYADRDFDGHVKRTKNR   79 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHH--HHhhHHhccCCCCCCCCCC
Confidence            4688999999999988777666544445555544445655443333332 355678887  999999999998764  69


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 017235          168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY  247 (375)
Q Consensus       168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~  247 (375)
                      |+|+|++|+++++.++.++.+++++++. ..|+.+..+..++.++.++|+    ..||++.+++++.|+..|+.+ ..+|
T Consensus        80 Pl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~g~~~-~~g~  153 (282)
T PRK12848         80 PLASGAVSEKEALALFVVLVLVAFLLVL-TLNTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAFGWGI-PMAF  153 (282)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHHHHHH-HHHH
Confidence            9999999999999999999998887654 468888877777888888996    589999999999899888754 4566


Q ss_pred             HHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHH
Q 017235          248 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI  327 (375)
Q Consensus       248 ~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~  327 (375)
                      .+.++.    .+  ...+++.+..++|+.+.++.++++|+|+|+++|+||+|+++|++++.++... +.+........++
T Consensus       154 ~a~~~~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~  226 (282)
T PRK12848        154 AAVQGS----VP--LEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLALLAWAGW  226 (282)
T ss_pred             HHHhCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHHHHHHHH
Confidence            665532    22  3344566677899999999999999999999999999999999988877643 3344333334444


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhcc
Q 017235          328 YMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  374 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~  374 (375)
                      ....+   ..|.++..+.+..+.+|+..++++  ++++|.+.++-+.
T Consensus       227 ~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~F~~n~  268 (282)
T PRK12848        227 LLGLG---WAYYWGLLVAAALFVYQQKLIRDR--EREACFKAFLNNN  268 (282)
T ss_pred             HhcCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCc
Confidence            33333   245566778889999999987664  5666666655443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.3e-33  Score=275.77  Aligned_cols=222  Identities=27%  Similarity=0.382  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHH-----HHHHHHHHHHHHHHhhhhhhccccccccccccC
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL-----LLKAFSGLLALICGNGYIVGINQIYDIGIDKVN  163 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~-----ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n  163 (375)
                      .+++++|++++||+++..++++...+.+   ...  ..+|..     ++...+....++.+++|+  +|||+|+|+|++|
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~---~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~Nd~~D~~~D~~~   96 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAV---SSG--AFGWTLENVLKLLAGMLLAGPLLCGTSQT--LNDYFDREVDAIN   96 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHH---HcC--CCCcchhHHHHHHHHHHHHHHHHHHHHHH--HhhhhccCccccC
Confidence            3457789999999998877666654332   221  223332     111111112245677777  9999999999999


Q ss_pred             CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235          164 KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  243 (375)
Q Consensus       164 ~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~  243 (375)
                      +|+||+++|++|+++++.+..++.+++++++. ..|+....+++++.+++++||.||+++||++++||+++|...|..+.
T Consensus        97 ~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~  175 (314)
T PRK07566         97 EPYRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPW  175 (314)
T ss_pred             CCCCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHH
Confidence            99999999999999999999998888887764 36888777777888889999999999999998899999999888776


Q ss_pred             HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235          244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  323 (375)
Q Consensus       244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i  323 (375)
                      ++++.+.++   .  .+++..++++++.++++.+++++||++|+|+|+++|+||+|+++|++++.+++..+..++++..+
T Consensus       176 ~~g~~~~~~---~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~  250 (314)
T PRK07566        176 WAGAAAFGA---G--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI  250 (314)
T ss_pred             HHHHHHhcc---C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence            766655432   1  22344455666777889999999999999999999999999999999999998877777766553

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=2.3e-33  Score=273.23  Aligned_cols=224  Identities=24%  Similarity=0.329  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHH-----HHHHHHHHHHHHHhhhhhhccccccccccc
Q 017235           87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLL-----LKAFSGLLALICGNGYIVGINQIYDIGIDK  161 (375)
Q Consensus        87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~l-----l~~l~~~v~lv~a~~~v~~iNd~~D~~~D~  161 (375)
                      ...+++++|++++||+++....+++..+..   .. ++ ++|...     +..++....++.+++|+  +|||+|+|+|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~---~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~--~NDy~D~d~D~   83 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAA---AS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQT--INDFYDRDIDA   83 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHH---Hc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhhhhc
Confidence            345667899999999999888877665432   22 22 333321     11111112345666666  99999999999


Q ss_pred             cCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHH
Q 017235          162 VNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA  235 (375)
Q Consensus       162 ~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~------~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg  235 (375)
                      .|+|+||+++|++|+++++.+++.+.+++++++.+.      .++..+.+++++++++++||.||+++||++++|++.++
T Consensus        84 ~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        84 INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG  163 (306)
T ss_pred             cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence            999999999999999999999988888887776532      13566777778888999999999999999988999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHH
Q 017235          236 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL  315 (375)
Q Consensus       236 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~  315 (375)
                      ...+..+..+++ +.++      ++++..+++++..++|+.++++.||++|+|+|+++|+||+|+++|++++++++.++.
T Consensus       164 ~~~~~~~~~~~~-a~~g------~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~  236 (306)
T TIGR02056       164 ASYIALPWWAGH-ALFG------ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAI  236 (306)
T ss_pred             HHHHHHHHHHHH-HHhC------CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence            888876666655 3222      233444456777788999999999999999999999999999999999999998777


Q ss_pred             HHHHHHHHH
Q 017235          316 LLNYVAAIL  324 (375)
Q Consensus       316 l~a~~~~i~  324 (375)
                      ..++...+.
T Consensus       237 ~~~~~~~~~  245 (306)
T TIGR02056       237 DIFQGLIAA  245 (306)
T ss_pred             HHHHHHHHH
Confidence            776655543

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=1.7e-33  Score=271.07  Aligned_cols=262  Identities=20%  Similarity=0.193  Sum_probs=192.0

Q ss_pred             HHHHHHHchhhHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCc
Q 017235           93 DACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLP  168 (375)
Q Consensus        93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~--~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RP  168 (375)
                      ++|.+++|++++.++.+.......+..++..  +.+++..++..+++ ..+.++++|+  +|||+|+|+|++|+|  +||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVG-AILMRGAGCV--INDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH-HHHHHHHHHH--HHhHhhhcccccCCcccCCC
Confidence            5788999999888776666654444444432  33455443323222 2345677777  999999999998864  799


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235          169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY  248 (375)
Q Consensus       169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~  248 (375)
                      +|+|++|++|++.+..++.++|+.++. ..|+.+..+++++.++.+.||    .+||++.+++++.|+..++.+ +.+|.
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~-~~g~~  152 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGA-LMGWA  152 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHH-HHHHH
Confidence            999999999999999999998987764 478888888888888899998    699999999999888777644 44466


Q ss_pred             HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235          249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  328 (375)
Q Consensus       249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~  328 (375)
                      +.++    ..+  ...+++.+..++|+.+++++|+++|+|+|+++|+||+|+++|++++.+... ++.++.....+.++.
T Consensus       153 a~~g----~~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~~~~  225 (281)
T TIGR01474       153 AVTG----DLS--TAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLLALAGLI  225 (281)
T ss_pred             HHcC----CCc--HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHHHHHHHH
Confidence            6553    222  333335566779999999999999999999999999999999988655444 334433333344443


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235          329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      ...+   ..|.++..+.+..+++++..++.  +++++++++++.++|
T Consensus       226 ~~~~---~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~F~~~~~  267 (281)
T TIGR01474       226 AGLG---PVYYLGLAAAALLLIRQIATLDI--RDPENCLKLFKANNY  267 (281)
T ss_pred             hCCc---HHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhH
Confidence            3323   24456677788999999998854  356778899988764

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.4e-33  Score=268.50  Aligned_cols=263  Identities=24%  Similarity=0.320  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcc
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI  169 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl  169 (375)
                      +++++|++++||++..++.++...+.   +++.+..+ +..++..+++ ..++.+++|+  +||++|+|+|++|+|+||+
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~---~la~~~~~-~~~~~l~~l~-~~l~~~a~~~--~Nd~~D~~~D~~~r~~Rpl   74 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGA---IIALGGLP-LDEALLGFLT-AFFASGSANA--LNDYFDYEVDRINRPDRPI   74 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHH---HHHCCCCc-hHHHHHHHHH-HHHHHHHHHH--HHhhhhHhhhhccCCCCCC
Confidence            46889999999999987777665433   34433322 2223222222 2355677777  9999999999999999999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 017235          170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA  249 (375)
Q Consensus       170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a  249 (375)
                      ++|++|+++++.++.++.+++++++. ..|+....+..++.+++++||.   ++||+++++|++++...|..+..|... 
T Consensus        75 ~~G~is~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~-  149 (279)
T PRK12884         75 PSGRISRREALLLAILLFILGLIAAY-LISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIA-  149 (279)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999998888887765 3688887777788888999984   789999889999999888655555432 


Q ss_pred             HHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017235          250 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM  329 (375)
Q Consensus       250 ~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~~  329 (375)
                      .++    .   ....++++...++|+.+.++.+|++|+|+|+++|+||+|+++|++++.++...++...++..+...+..
T Consensus       150 ~~~----~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12884        150 VGE----L---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG  222 (279)
T ss_pred             hCC----C---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211    1   113344566778999999999999999999999999999999999999988877777776555433332


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--CHHHHHHHHHhcc
Q 017235          330 PQAFRRNLMIPAHVILASCLLFQTWLLERANY--TKVILATCCTLGM  374 (375)
Q Consensus       330 ~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~~f~~~~~  374 (375)
                      ..+   ..|++...+....++++++..-++++  +....++..+++|
T Consensus       223 ~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (279)
T PRK12884        223 IFN---ILYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTAM  266 (279)
T ss_pred             Hhh---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            222   23455566777788888755433322  2223444555554

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=4.4e-33  Score=270.11  Aligned_cols=267  Identities=16%  Similarity=0.190  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CC
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PY  166 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~  166 (375)
                      +.++++|+|++||++.....+++..+.   +++.++.+++..+...+++ ..+.++++|+  +|||+|+|+|++|+  |+
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~---~la~~~~~~~~~~~l~~l~-~~l~~aa~~~--iNd~~D~~iD~~~~Rt~~   80 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGM---LLAPPGVPPLLLLLLTLLG-IALVAGAAGA--LNNYIDRDIDAKMERTKN   80 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhccCCCCCccCC
Confidence            457899999999999887777666443   3443334566544433333 2356778887  99999999999998  57


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235          167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  245 (375)
Q Consensus       167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~-l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g  245 (375)
                      ||+++|++|++|++.++.++.++|++++....|+....+..++.+ ..++||.   ++||++. +|..++...|..++++
T Consensus        81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~~g~~~~l~  156 (296)
T PRK04375         81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGAAGAMPPLI  156 (296)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHHHHHhHHHH
Confidence            999999999999999999999889887655457766665555544 4668983   6999985 6788888888777788


Q ss_pred             HHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHH
Q 017235          246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA  325 (375)
Q Consensus       246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~  325 (375)
                      +|.+.++.      ++...+++.+..++|+.+.+..++++|+|+|+++|+||+|+++|+++++++....+++.....++.
T Consensus       157 g~~a~~g~------~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~  230 (296)
T PRK04375        157 GWAAVTGS------LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLP  230 (296)
T ss_pred             HHHHhCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776532      233344567778899999999999999999999999999999999999887776655555444433


Q ss_pred             HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235          326 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      ......++.  ++..+..+.+..+.+++...+++  +++.+++.++.++|
T Consensus       231 ~~~~~~~~~--y~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~s~~  276 (296)
T PRK04375        231 VLLGMAGLL--YLVVALLLGAWFLYYAWRLYRKD--DRKWARKLFRYSIN  276 (296)
T ss_pred             HHHhccCHH--HHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHH
Confidence            332222221  22324444556666777777653  56788888887765

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.2e-32  Score=265.24  Aligned_cols=258  Identities=21%  Similarity=0.189  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC-----
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK-----  164 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~-----  164 (375)
                      +++|.+++.+||++...+..++..+.+.+... .+.++|..++..+++. .++++++|+  +|||+|++.|..|+     
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~-~~~f~~~~~ll~~l~~-~l~~~~~n~--~Ndy~D~~~g~D~~~rt~~   77 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYL-FRSFDPLLGALMLLGY-FLLHASLNV--FNDYKDYVLDCDHHETTGY   77 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHH-HHHHHHHHH--HHhHHHHhcCCccccccCC
Confidence            46788999999999998888877655444332 2346777665444332 345677777  99999976666554     


Q ss_pred             CCCccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHH
Q 017235          165 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL  241 (375)
Q Consensus       165 p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~  241 (375)
                      |+||+++|++|+++++.+..++..+++.++.   ...++..+.+++++.++++.||.||+++|+++ +||+.+++.+|..
T Consensus        78 ~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~g-lGe~~v~~~~g~~  156 (296)
T PRK05951         78 RQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRW-LGEHLVFYAWSHM  156 (296)
T ss_pred             CCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCC-chHHHHHHHHHHH
Confidence            6799999999999999988887766665443   23466677777888899999999999999885 5999999999999


Q ss_pred             HHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHH
Q 017235          242 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA  321 (375)
Q Consensus       242 ~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~  321 (375)
                      +++|.++.+++..      +...+..++...+++..++..||+||+|+|+++|+||+|+++|++++ +++..+..++|+.
T Consensus       157 ~vlg~~~~~~~~~------~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~  229 (296)
T PRK05951        157 LVMGLIYVWLGNL------SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVI  229 (296)
T ss_pred             HHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHH
Confidence            9999988876422      23444567777888889999999999999999999999999999999 7666677777776


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017235          322 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERA  359 (375)
Q Consensus       322 ~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~  359 (375)
                      .+.........+...+++++.-.....+.+++...+.+
T Consensus       230 ~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~  267 (296)
T PRK05951        230 LQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPD  267 (296)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence            65444332222222234455544455556666655443

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1e-32  Score=269.26  Aligned_cols=265  Identities=17%  Similarity=0.114  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHH---chhhHHHHHHHHHHHHHHHHHcCCC-----CCcHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 017235           86 NKVSAFRDACWRFL---RPHTIRGTALGSVALVARALIENPN-----LIKWSLLLKAFSGLLALICGNGYIVGINQIYDI  157 (375)
Q Consensus        86 ~~~~~~l~~~~~l~---Rp~~~~g~~l~~~~~~~~a~~~~~~-----~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~  157 (375)
                      +.+..++++|+|++   ||++.....++...+   ..++...     .+++..++..+++. .++++++|+  +|||+|+
T Consensus        24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G---~~lA~~~~~~~~~~~~~~~~l~~l~~-~l~~~a~~~--~Nd~~Dr   97 (314)
T PRK12878         24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWS---AALAAGAAADLGLLLLWHLFLFFVGA-IAMRGAGCT--YNDIVDR   97 (314)
T ss_pred             hhcchhHHHHHHHHccccchhhHHHHHHHHHH---HHHhcccccCCCCCCHHHHHHHHHHH-HHHHHHHHH--HHHHHHH
Confidence            44668899999999   555655555555433   3333321     34544433333332 355777777  9999999


Q ss_pred             cccccCCC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHH
Q 017235          158 GIDKVNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA  235 (375)
Q Consensus       158 ~~D~~n~p--~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg  235 (375)
                      |+|++|+|  +||+++|++|+++++.+..++.++|+.+.. ..|+.++.++++++++.++||    .+||++.+++...|
T Consensus        98 ~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~G  172 (314)
T PRK12878         98 DIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAIVAAYP----FMKRITWWPQFFLG  172 (314)
T ss_pred             hcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HHHhcCCcchHHHH
Confidence            99998875  699999999999999999988888887764 468888888888888899997    59999888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHH
Q 017235          236 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL  315 (375)
Q Consensus       236 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~  315 (375)
                      +..++.+ +.+|++.++.    +++  ..+++.+..++|+.+.+.++++||+|+|+++|+||+|+++|++++.++.....
T Consensus       173 l~~~~~~-l~g~~a~~g~----~~~--~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~  245 (314)
T PRK12878        173 LAFSWGA-LMGWAAHFGS----LSL--AAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG  245 (314)
T ss_pred             HHHHHHH-HHHHHHHhCC----Cch--HHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH
Confidence            7765544 4447776542    233  33445566779999999999999999999999999999999999988875444


Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhcc
Q 017235          316 LLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  374 (375)
Q Consensus       316 l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~  374 (375)
                      +.. ....+.+.....++   .++++..+.+..+.+|+..++.+  +++.++++|+.+.
T Consensus       246 ~~~-~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~n~  298 (314)
T PRK12878        246 LAV-LLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDID--DPDQCLRLFKSNR  298 (314)
T ss_pred             HHH-HHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccC--ChHHHHHHHHHhH
Confidence            333 33333333333332   33455555667788998888664  4556788887654

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=3.9e-32  Score=261.43  Aligned_cols=261  Identities=17%  Similarity=0.142  Sum_probs=186.0

Q ss_pred             HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CCCc
Q 017235           91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP  168 (375)
Q Consensus        91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~RP  168 (375)
                      ++++|+|++||++.....+++..+.   +++.++.+++..++..+++ ..+.++++|+  +||++|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~---~la~~~~~~~~~~~l~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~RP   74 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGY---FLAAKHGVSWLPLIPLLIG-GTLASGGSAA--FNHGIERDIDKVMSRTSKRP   74 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHH---HHhccCCCCHHHHHHHHHH-HHHHHHHHHH--HhchHhcCCCCCCCCCCCCC
Confidence            3678999999999877666666443   3443344565544433332 2355777777  99999999999998  5799


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 017235          169 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITS-LYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY  247 (375)
Q Consensus       169 l~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~-l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~  247 (375)
                      +|+|++|++|++.+++++.++|+.++....|+.... +.+...+..+.||.   ++||+++ .|..++...|..+++++|
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~-~~~~v~~~~g~~~~l~g~  150 (279)
T PRK12869         75 TPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI---WLKPRTW-LNIVIGGFAGNAAALAGY  150 (279)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc---ccccCCh-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888988776546776543 33344456789983   7999987 577888888998999999


Q ss_pred             HHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHH
Q 017235          248 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI  327 (375)
Q Consensus       248 ~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~  327 (375)
                      .+.++.      .+...+++++..++|+.++....+++|+|+|+++|+||+|+++|++++.++...+..+.....+..+.
T Consensus       151 ~a~~g~------~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~  224 (279)
T PRK12869        151 ASGTGS------LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL  224 (279)
T ss_pred             HHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887652      22344556677788999888778899999999999999999999999998887776665554443333


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHH-HHhhccCCCCHHHHHHHHHhc
Q 017235          328 YMPQAFRRNLMIPAHVILASCLLFQ-TWLLERANYTKVILATCCTLG  373 (375)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~f~~~~  373 (375)
                       ...+   ..|.++.++.+..++++ ....+. + +++++++.++.+
T Consensus       225 -~~~g---~~y~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~f~~s  265 (279)
T PRK12869        225 -YYIG---LIGLILVAILSAALMATSIRALLN-P-TKEEAWKMFKAS  265 (279)
T ss_pred             -hhcc---HHHHHHHHHHHHHHHHHHHHHhhC-C-ChHHHHHHHHHH
Confidence             2223   24555555555555544 344433 2 355666766654

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=2.4e-32  Score=262.96  Aligned_cols=264  Identities=17%  Similarity=0.156  Sum_probs=192.8

Q ss_pred             HHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC--CCCcc
Q 017235           93 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPI  169 (375)
Q Consensus        93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~-~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~--p~RPl  169 (375)
                      |+|+|++||++.....+++..+.   +++.+.. +++..++..+++ ..++.+++|+  +|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~---~la~~~~~~~~~~~~l~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~Rpl   74 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGM---WLAPGGALVNPPLLLLTLLG-TTLAAASANA--FNMYIDRDIDKKMKRTRNRPL   74 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHH---HHhCCCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhcccCcCCCCCCCCCCCC
Confidence            46899999999987777766543   3333332 566554433333 2356777777  99999999999987  57999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 017235          170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY  248 (375)
Q Consensus       170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l-~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~  248 (375)
                      ++|++|+++++.+++++.++|+.+.....|+....++.++.++ .++||.   .+||++.+ +..++...|..+++++|.
T Consensus        75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        75 VTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888755545788777777777654 789984   68999876 556677788888899998


Q ss_pred             HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235          249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  328 (375)
Q Consensus       249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~  328 (375)
                      +.++.    ++  ...+++++..++|+...+...+++|+|+|+++|+||+|+++|++++.++....++......++.++.
T Consensus       151 a~~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~  224 (280)
T TIGR01473       151 AVTGS----IS--LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFL  224 (280)
T ss_pred             HhcCC----CC--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87542    22  3334456677889988887888999999999999999999999999887776655555544444444


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhccC
Q 017235          329 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  375 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~~~  375 (375)
                      ...++  .++..+..+.+..+.+++...+++ ++++.+++.++.+||
T Consensus       225 ~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~f~~s~~  268 (280)
T TIGR01473       225 GGTGW--LYLIVATLLGALFLYLAFKFYRDP-TDRKKARKLFKFSLI  268 (280)
T ss_pred             hcccH--HHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHH
Confidence            33332  233345555667777888777654 356678888887764

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=2.9e-31  Score=256.88  Aligned_cols=226  Identities=23%  Similarity=0.222  Sum_probs=177.1

Q ss_pred             HHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccc--ccccc--CCCCC
Q 017235           92 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDI--GIDKV--NKPYL  167 (375)
Q Consensus        92 l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~--~~D~~--n~p~R  167 (375)
                      +++|++++||++...+.++...+.+.+. . .+.+++..++..+++. .++.+++|.  +|||+|+  ++|+.  ++|+|
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~-~-~~~~~~~~~ll~~l~~-~l~~~~~n~--~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAY-W-LGSFHPLLALLALLAA-LLLQIATNL--ANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHH-H-cCCccHHHHHHHHHHH-HHHHHHHHH--HHhHHHhccCCCcccccCCcc
Confidence            6789999999999988888876654432 2 1345665554333332 234566666  9999999  46754  45789


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235          168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAF---NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  244 (375)
Q Consensus       168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~---~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~  244 (375)
                      |+++|++|+++++.++..+.+++++++..   ..++..+.+++++.++++.||.||+++|+++ +||+.+++.+|...+.
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~g-lge~~~~~~~G~~~~~  156 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTG-LGELFVGVFFGLVIVL  156 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCC-cHHHHHHHHHHHHHHH
Confidence            99999999999998888877776655532   2466667777778889999999999999986 5999999999998888


Q ss_pred             HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235          245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  324 (375)
Q Consensus       245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~  324 (375)
                      +.++.+++.      .+...++.+++.++|+.++++.||++|+|+|+++|+||+|+++|++++++++..+..++++..+.
T Consensus       157 ~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~  230 (293)
T PRK06080        157 GTYYLQAGT------VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVL  230 (293)
T ss_pred             HHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHH
Confidence            888776532      23455667888889999999999999999999999999999999999999999999999987776


Q ss_pred             HHHhc
Q 017235          325 AAIYM  329 (375)
Q Consensus       325 ~~~~~  329 (375)
                      ..+..
T Consensus       231 ~~~~~  235 (293)
T PRK06080        231 LALLG  235 (293)
T ss_pred             HHHHh
Confidence            55443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=2.9e-31  Score=255.00  Aligned_cols=208  Identities=22%  Similarity=0.304  Sum_probs=155.8

Q ss_pred             HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCccc
Q 017235           91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA  170 (375)
Q Consensus        91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~  170 (375)
                      ++|+|++++||++.....++...+   ++++.++.+++..++..+++ ..+.++++|+  +||++|+|+|++|+|+||++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G---~~la~~~~~~~~~~~l~~~~-~~~~~~a~~~--~Nd~~D~~~D~~n~~~Rpl~   75 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILG---SLVALGGIPPIKTLILIFLV-VYLGCSGGNT--INDYFDYEIDKINRPNRPLP   75 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHH---HHHHcCCCCcHHHHHHHHHH-HHHHHHHHhH--HHhhhhHhccccCCCCCCCC
Confidence            367899999999988666665533   33443333444333222222 2344566777  99999999999999999999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 017235          171 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT  250 (375)
Q Consensus       171 sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~  250 (375)
                      +|++|+++++.+..++.++|+.++. ..|+..+.+.+++.+++++|+.   ++||++.+||+++|...|..+..|.. +.
T Consensus        76 sG~is~~~a~~~~~~l~~~g~~l~~-~~~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~-a~  150 (277)
T PRK12883         76 RGAMSRKAALYYSLLLFAVGLALAY-LINIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAI-AV  150 (277)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHH-Hh
Confidence            9999999999999988888887664 4788887777778888999984   78999888999999999987655543 22


Q ss_pred             HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHH
Q 017235          251 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL  317 (375)
Q Consensus       251 ~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~  317 (375)
                       +    .+++.  .+ .....+++..++++.||++|+|+|+++|+||+|+++|+++++++...+..+
T Consensus       151 -~----~~~~~--~~-~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~  209 (277)
T PRK12883        151 -G----RIGLA--GY-LAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVL  209 (277)
T ss_pred             -c----cccHH--HH-HHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHH
Confidence             1    12222  12 223356777889999999999999999999999999999999877655433

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=8.9e-31  Score=255.92  Aligned_cols=231  Identities=15%  Similarity=0.176  Sum_probs=179.7

Q ss_pred             HHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCC----CCC
Q 017235           92 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK----PYL  167 (375)
Q Consensus        92 l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~----p~R  167 (375)
                      +|.|++.+||++...+.+++..+.+.+... .+.++|..++..+++. .++++++|+  +|||+|++.|..++    ++|
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~-~~~~~~~~~ll~ll~~-~~~~~~~N~--~NDy~D~~~g~D~~~~~~~~~   78 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYV-AKIFDWLLFLAFMVAM-LAFDIATTA--INNYMDFKKALDTADYVGIGN   78 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHHHH-HHHHHHHHH--HHhHHHHhcCCCcccccCCcc
Confidence            678999999999998888887655444322 3346776554333332 235667776  99999998776664    568


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235          168 PIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  244 (375)
Q Consensus       168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~  244 (375)
                      ++++|.+|+|+++..+..+..++++++.   +..++..+.+++++.+.++.||.||+++||++ +||+.+++.+|+.++.
T Consensus        79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~g-LGe~~v~i~~G~~~v~  157 (317)
T PRK13387         79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMP-LGEIFSGLTMGFGIFL  157 (317)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCc-cHHHHHHHHHHHHHHH
Confidence            9999999999999988888877776543   34677788888899999999999999999998 6999999999999999


Q ss_pred             HHHHHHHhhhccC----------ccch----HHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHH
Q 017235          245 GVYYATRAALGLS----------FEWN----APVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL  310 (375)
Q Consensus       245 g~~~a~~~~~g~~----------~~~~----~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l  310 (375)
                      |+++.+++..+..          ..++    ...++.+++..+.+..+++.||++|+|+|+++|+||+|+++|+|++.++
T Consensus       158 g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l  237 (317)
T PRK13387        158 LAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL  237 (317)
T ss_pred             HHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence            9988876432100          0000    0122367777788888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 017235          311 GSGLLLLNYVAAILAAI  327 (375)
Q Consensus       311 ~~~l~l~a~~~~i~~~~  327 (375)
                      +.++..++|+..+....
T Consensus       238 ~~~l~~~a~l~~~~~v~  254 (317)
T PRK13387        238 FAILFYASYLAIAVIVL  254 (317)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999987765543

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=7.1e-31  Score=255.34  Aligned_cols=268  Identities=16%  Similarity=0.141  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC-
Q 017235           87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-  165 (375)
Q Consensus        87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p-  165 (375)
                      ..++.+++|++++||++...+.+++..+.+   ++..+.+++..++..+++ .+++++++|+  +||++|+|+|++|+| 
T Consensus         8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~---la~~~~~~~~~~~~~~lg-~~l~~aaa~~--~Nd~~D~~iD~~~~Rt   81 (306)
T PRK13362          8 LWEASLKDYIQVTKPGIIFGNVISVAGGFF---LASKGHVDPVLMLAAVIG-LSLVVASGCA--LNNCIDRDIDAKMQRT   81 (306)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---HHccCCCCHHHHHHHHHH-HHHHHHHHHH--HhChHHhCcCCCCCCC
Confidence            345678899999999999988887765543   333334565544333322 3466778888  999999999998764 


Q ss_pred             -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235          166 -YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  243 (375)
Q Consensus       166 -~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~-l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~  243 (375)
                       +||+|+|++|+++|+.+++++.++|+.++....|+....+..++.+ ..++||.   ++||++.+++++.|+ .|..++
T Consensus        82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~-~ga~p~  157 (306)
T PRK13362         82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSL-SGAMPP  157 (306)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHH-HHHHHH
Confidence             7999999999999999999999889876655567776655555443 4679983   799999988775555 466678


Q ss_pred             HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235          244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  323 (375)
Q Consensus       244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i  323 (375)
                      +++|.+.++.    ++  ...+++....++|+.+.+...+++|+|||+++|+||+|+++|++++++......++.....+
T Consensus       158 l~G~~a~~g~----~~--~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~  231 (306)
T PRK13362        158 VVGYCAVTGQ----FD--AGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTA  231 (306)
T ss_pred             HHHHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHH
Confidence            8888877542    22  34455677788999999999999999999999999999999999888755544333333222


Q ss_pred             HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHhc
Q 017235          324 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERAN-YTKVILATCCTLG  373 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~~~f~~~~  373 (375)
                      +.......+   ..|....+++...+++.+.+.-+++ ++++..++.|+++
T Consensus       232 l~~~~g~~g---~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S  279 (306)
T PRK13362        232 LLPLAGYTG---IGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFS  279 (306)
T ss_pred             HHHHHcccc---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            221211122   2345555566667777776654332 4555566777665

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=4.1e-31  Score=253.23  Aligned_cols=217  Identities=20%  Similarity=0.092  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCC
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKW--SLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPY  166 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~--~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~  166 (375)
                      ...++.+++.+||.+++.+..+...+.   ..+ ++.++|  ..+   +.++.+++..+..+|++||++|+|+|++|+|+
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~---~~~-g~~~~~~~~~~---~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGV---WLT-GHLYTLDPGVL---PLLLYLTLPFNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHH---HHh-cCcccchhHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence            455667899999999998887777554   233 334666  322   22334455667778889999999999999999


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235          167 LPIAAGDLSVQSAWFLVIFFAVTGLL---IVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  243 (375)
Q Consensus       167 RPl~sG~ls~~~a~~~~~~l~i~gl~---l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~  243 (375)
                      ||+++|++|+++++.+...+.++++.   ......++..+.+..++.++++.||.||+|+|++|++++++. ...|.  +
T Consensus        82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~--p  158 (292)
T PRK13595         82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYAL--P  158 (292)
T ss_pred             CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHH--H
Confidence            99999999999998876555444322   122356788777777888999999999999999999998886 44455  3


Q ss_pred             HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235          244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  323 (375)
Q Consensus       244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i  323 (375)
                      ++.+.+..   |..  ..+..   .+..++|..++|++++++|+|+||+.|+||+|+++|+|++.+++..+.+++.+...
T Consensus       159 ~~~~~~~~---g~~--~~~~~---l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~  230 (292)
T PRK13595        159 LALPALAL---GAP--VPWPP---LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW  230 (292)
T ss_pred             HHHHHHHc---CCc--chHHH---HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence            33333332   211  11121   23445888999999999999999999999999999999999999888776655544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=1.1e-28  Score=239.43  Aligned_cols=227  Identities=20%  Similarity=0.212  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--ccccCCCC
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPY  166 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~n~p~  166 (375)
                      .++++.|++.+||+++..++.++..+.+.+.. ..+.++|...+..+++. .+++++.|.  +|||+|++  .|+. ++.
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~-~~~~f~~~~~ll~ll~~-~l~q~~~N~--~NDy~D~~~G~D~~-~~~   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALG-ETGVFRLDQFITFLLAA-ILILAWENL--SNDVFDADTGIDKN-KFH   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHHH-HHHHHHHHH--HHHHHHHhccCCcc-ccc
Confidence            45678899999999999888888766544433 23357777665443332 244566666  99999987  6763 222


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235          167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  243 (375)
Q Consensus       167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~  243 (375)
                       ...++..+++++...+..+..++++++.   +..++..+.++.++++++++||.||+++|+++ +||+.+++.+|..++
T Consensus        84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~g-LGE~~v~l~~G~l~v  161 (304)
T PRK07419         84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQG-LGEPLCFLAFGPLAV  161 (304)
T ss_pred             -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCC-chHHHHHHHHHHHHH
Confidence             3445555789988888777776665543   24577778888889999999999999999998 599999999999999


Q ss_pred             HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235          244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  323 (375)
Q Consensus       244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i  323 (375)
                      .|.++.+++      .++...+..++...+.+.+++..||++|+|+|+++|+||+|+++|++++++++..+...+|+..+
T Consensus       162 ~g~~yv~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i  235 (304)
T PRK07419        162 AAALYSQTP------SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALEL  235 (304)
T ss_pred             HHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHH
Confidence            999988764      23344456777788889999999999999999999999999999999999999999999998877


Q ss_pred             HHHHh
Q 017235          324 LAAIY  328 (375)
Q Consensus       324 ~~~~~  328 (375)
                      .....
T Consensus       236 ~~v~~  240 (304)
T PRK07419        236 LPVLL  240 (304)
T ss_pred             HHHHH
Confidence            65543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.97  E-value=1.8e-28  Score=236.13  Aligned_cols=216  Identities=19%  Similarity=0.135  Sum_probs=168.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--ccccC--CCCCccccCcCC
Q 017235          100 RPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVN--KPYLPIAAGDLS  175 (375)
Q Consensus       100 Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~n--~p~RPl~sG~ls  175 (375)
                      ||++...++.++..+.+.+.. .+ .++|..++..+++. .++++++|.  +|||+|++  .|+.+  .|+|++++|.++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~-~~-~f~~~~~ll~~~~~-~~~q~~~N~--~NDy~D~~~G~D~~~~~~~~r~i~~g~is   75 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAW-LH-AFVWLVALLALATA-VLLQILSNY--ANDYGDGIKGSDTDDRIGPLRGVQKGLIT   75 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-cC-CccHHHHHHHHHHH-HHHHHHHHH--HHhHHHHhcCCChhhccCCcchhcCCCCC
Confidence            899998888888766554432 23 57777665444332 245666676  99999985  36533  468999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---hHHH------HHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 017235          176 VQSAWFLVIFFAVTGLLIVAF---NFGP------FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV  246 (375)
Q Consensus       176 ~~~a~~~~~~l~i~gl~l~~~---~~~~------~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~  246 (375)
                      ++++...++++++++++++.+   ..++      ..+.+++++++.++.||.||+++|+++ +||+.+++.+|..+++|+
T Consensus        76 ~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~g-LGE~~v~i~~G~l~v~g~  154 (284)
T TIGR00751        76 PREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAG-LGDISVLVFFGPLAVLGT  154 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCc-hHHHHHHHHHHHHHHHHH
Confidence            999998888877766655532   2344      345667788889999999999999997 599999999999999999


Q ss_pred             HHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHH
Q 017235          247 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA  326 (375)
Q Consensus       247 ~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~  326 (375)
                      |+.+++.      +++..++.++...+.+.+++..||++|+|+|+++|+||+|+++|+|++++++..+...+|+..+...
T Consensus       155 ~yvq~~~------~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~  228 (284)
T TIGR00751       155 QYLQAHR------VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFM  228 (284)
T ss_pred             HHHhcCC------CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence            9887642      3344455667777888999999999999999999999999999999999999999888887776544


Q ss_pred             H
Q 017235          327 I  327 (375)
Q Consensus       327 ~  327 (375)
                      +
T Consensus       229 ~  229 (284)
T TIGR00751       229 L  229 (284)
T ss_pred             H
Confidence            3

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02922 prenyltransferase

Probab=99.97  E-value=7.3e-28  Score=234.93  Aligned_cols=232  Identities=17%  Similarity=0.169  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--ccccCCCCC
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPYL  167 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~n~p~R  167 (375)
                      .+++.|++.+||++...+++++..+.+.+.. ..+.++|...+..+++.+ ++.++.|.  +|||+|++  .|+.++..+
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~-~~g~f~~~~~ll~ll~~~-l~q~~~N~--~NDy~D~~~G~D~~~~~~~   88 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYL-QTGLFDARRYGTLLLSSV-LVITWLNL--SNDAYDADTGVDKNKKESV   88 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHH-HHHHHHHH--HhhhhHhccCcCcccCCCC
Confidence            3467789999999999888888866554433 224578877654443332 44566666  99999986  576443221


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235          168 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFN----FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  243 (375)
Q Consensus       168 Pl~sG~ls~~~a~~~~~~l~i~gl~l~~~~----~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~  243 (375)
                      .-..|  |+++++...+.+.++++......    .++..+.+++++++.+++||.||+++||+++ ||+.+++.+|..++
T Consensus        89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i~fG~l~v  165 (315)
T PLN02922         89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFAAFGPLAT  165 (315)
T ss_pred             CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHHHHHHHHH
Confidence            22233  89999888777776665322221    3577778888999999999999999999975 99999999999999


Q ss_pred             HHHHHHHHhhhcc-Cc---cchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHH
Q 017235          244 FGVYYATRAALGL-SF---EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNY  319 (375)
Q Consensus       244 ~g~~~a~~~~~g~-~~---~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~  319 (375)
                      .|.|+++++..+. .+   .+++..++.+++..+++.+++.+||++|+|+|+++|+||+|+++|++++++++.++...+|
T Consensus       166 ~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y  245 (315)
T PLN02922        166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY  245 (315)
T ss_pred             HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence            9988887642210 11   2345556688888999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHh
Q 017235          320 VAAILAAIY  328 (375)
Q Consensus       320 ~~~i~~~~~  328 (375)
                      +..+...+.
T Consensus       246 ~~~i~~v~~  254 (315)
T PLN02922        246 SLLAALGLL  254 (315)
T ss_pred             HHHHHHHHH
Confidence            877755443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=1.4e-27  Score=227.98  Aligned_cols=227  Identities=20%  Similarity=0.211  Sum_probs=175.5

Q ss_pred             HHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccc--cccc----CC
Q 017235           91 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKV----NK  164 (375)
Q Consensus        91 ~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~--~D~~----n~  164 (375)
                      +.+.|+++.|||++...+++++.+.+.+....+ .++|...+..+++.+ ++....|.  +|||+|++  .|..    .+
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~-~f~~~~~ll~Li~~~-~iq~~vN~--~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGK-SFNLLVALLALIAAI-LLQILVNL--ANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHH-HHHHHHHH--HHhhhhhhcCCCCCCCcccc
Confidence            447899999999999999999877655544432 355655544443332 34556565  99999986  4543    12


Q ss_pred             CCCccccCcCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHH
Q 017235          165 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL  241 (375)
Q Consensus       165 p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~  241 (375)
                      .++-+...+++++..+.+.+.+...+.+++.   ...+|..+.+++++.+.++.|+.+|++++|.|+ ||+.+++++|..
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~~~vffG~l  161 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIFVGVFFGPL  161 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHHHHHHHHHH
Confidence            2456777788888887777666655544442   245677788888999999999999999999974 999999999999


Q ss_pred             HHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHH
Q 017235          242 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA  321 (375)
Q Consensus       242 ~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~  321 (375)
                      .+.|+|+.+++.      +++..+..+++..+.+..++..||+||+|+|+|+|++|+||++|+++++.+...++..+|++
T Consensus       162 ~v~g~~yiqt~~------~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~  235 (303)
T COG1575         162 IVLGAYYIQTGR------LSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA  235 (303)
T ss_pred             HHHHHHHHhccc------chHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH
Confidence            999999988642      33445667888888899999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHh
Q 017235          322 AILAAIY  328 (375)
Q Consensus       322 ~i~~~~~  328 (375)
                      .++....
T Consensus       236 ~~~~~i~  242 (303)
T COG1575         236 IVIFVIL  242 (303)
T ss_pred             HHHHHHH
Confidence            7754433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=2.2e-27  Score=228.76  Aligned_cols=221  Identities=21%  Similarity=0.219  Sum_probs=168.5

Q ss_pred             HHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccc--cccCCCCCccccC
Q 017235           95 CWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGI--DKVNKPYLPIAAG  172 (375)
Q Consensus        95 ~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~--D~~n~p~RPl~sG  172 (375)
                      |++.+||++...+++++..+.+.+... .+.++|..++..+++.+ ++++++|.  +|||+|++.  |+.+.  ....++
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~-~~~f~~~~~ll~li~~l-~~q~~~N~--~Ndy~D~~~G~D~~~~--~~~~~~   75 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQ-GGVFHLDRFALFLIAAI-LILAWINL--TNDVFDSDTGIDRFKL--HSIVNL   75 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHH-HHHHHHHH--HHhHHHHhcCCCcccc--CCcccc
Confidence            578899999998888887665544332 23577776654433322 34566666  999999874  76432  122233


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 017235          173 DLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA  249 (375)
Q Consensus       173 ~ls~~~a~~~~~~l~i~gl~l~~---~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a  249 (375)
                      ..+++++.....++..++++++.   ...++..+.++.++++.++.||.||+++|++++ ||+++++.+|..++.|+++.
T Consensus        76 ~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv  154 (285)
T TIGR02235        76 TGSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIAAALYA  154 (285)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHHHHHHH
Confidence            34578887777776666665443   245677777888899999999999999999985 99999999999999999988


Q ss_pred             HHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235          250 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  328 (375)
Q Consensus       250 ~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~  328 (375)
                      +++      .+++..++.+++..+.+.++...||++|+|+|+++|+||+|+++|+|++.+++..+...+|+..+.....
T Consensus       155 qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       155 QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG  227 (285)
T ss_pred             hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            764      2334455677888899999999999999999999999999999999999999999999999877655443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=3.7e-28  Score=234.04  Aligned_cols=252  Identities=22%  Similarity=0.234  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcc
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI  169 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl  169 (375)
                      +.+++++++.|..+......+..........     .++......+++ ..++.+++|+  +||++|+|+|++|+|+||.
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~--~N~~~D~~~D~~n~~~R~~   73 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL-----LGLPISWLLLLI-TFLIAAAVYI--INYLTDLEEDIINKPERVV   73 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH-----HcChhHHHHHHH-HHHHHHHHHH--hhhhcCCchhhcCCCchHH
Confidence            4568899999999976544443321111001     111111112222 2355667777  9999999999999999998


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCC-CcccccchhHHHHHHHHHHHHHHHHHH
Q 017235          170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPF-RMKRFAVAAFLIIATVRGFLLNFGVYY  248 (375)
Q Consensus       170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl-~lKr~~~~g~l~vg~~~G~~~~~g~~~  248 (375)
                      ++++...+.++.+..+...+++.+.....|+..+.++.++.+++++||.||+ ++||.|.+||+++|..+|..+.+++++
T Consensus        74 ~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~  153 (285)
T PRK12872         74 FSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVY  153 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence            8544333333333333333333332223478777777888888999999876 589999999999999999988777766


Q ss_pred             HHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHh
Q 017235          249 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  328 (375)
Q Consensus       249 a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~~  328 (375)
                      ..++      .++...+..+++.+++..++++++|++|+|+|+++|+||+|+++|+++++++...+.++.++..+...+.
T Consensus       154 ~~~~------~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~  227 (285)
T PRK12872        154 YYQL------TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYT  227 (285)
T ss_pred             hccc------ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432      1233444456677788889999999999999999999999999999999999999988888777655443


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017235          329 MPQAFRRNLMIPAHVILASCLLFQTWLLER  358 (375)
Q Consensus       329 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~  358 (375)
                      ....+   .++....+....+.+++...+.
T Consensus       228 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~  254 (285)
T PRK12872        228 GLLPL---LLLVLLLLLAYVLYYIIKLFAA  254 (285)
T ss_pred             hHhhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence            22221   2222333334455555555543

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.3e-27  Score=229.55  Aligned_cols=218  Identities=21%  Similarity=0.194  Sum_probs=155.8

Q ss_pred             HHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-HHhhhhhhccccccccccccCCCCCcccc
Q 017235           93 DACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALI-CGNGYIVGINQIYDIGIDKVNKPYLPIAA  171 (375)
Q Consensus        93 ~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv-~a~~~v~~iNd~~D~~~D~~n~p~RPl~s  171 (375)
                      +.+++++||.+++.+.++...   +++++ ++.++|. ++   +..+++. ..+...|++|||+|+|.|+.|+|++.. .
T Consensus         2 ~~~~~~~rP~~wi~~a~pf~~---g~~la-~~~~~~~-~l---~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          2 RQLLLSSRPISWINTAYPFAA---AYLLA-GGEIDWL-FV---VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             hhHHHhcccHHHhccHHHHHH---HHHHH-CCCCChH-HH---HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            568999999999988888774   33444 3456663 22   2223322 233333468999999999999875432 5


Q ss_pred             CcCCHHHHHHHHHHHHHHHHH---HH-HHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 017235          172 GDLSVQSAWFLVIFFAVTGLL---IV-AFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY  247 (375)
Q Consensus       172 G~ls~~~a~~~~~~l~i~gl~---l~-~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~  247 (375)
                      |.++++|+......+.+++..   +. ....++.++.++.++++.++.||.||+|+|++++.+++..+........+|.+
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~  152 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLV  152 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence            889999874433333322222   11 22336777778888899999999999999999988776554444333666665


Q ss_pred             HHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHH
Q 017235          248 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA  326 (375)
Q Consensus       248 ~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~  326 (375)
                      +. ++    .  +++..++.+..+++|+.+++++||+||+|+||++|+||+|+++|+|++.+++.+++.+++++.+..+
T Consensus       153 ~~-~~----~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        153 LA-GA----P--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             Hh-hc----c--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54 21    2  2334455677778999999999999999999999999999999999999999999999887776433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=2.7e-27  Score=229.37  Aligned_cols=255  Identities=17%  Similarity=0.169  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC------
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN------  163 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n------  163 (375)
                      +++++|++++||++......++..+.+.+.. .++.+++..++...+ ..+++.+++|+  +||++|+|+|++|      
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~-~~g~~~~~~~~l~~l-~~~l~~~ag~~--iND~~D~~~D~~~v~rtm~   78 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFA-NYGGFSWELTIKAAL-IGLFGFEAGFV--LNDYVDRKRDRLDVENTLT   78 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHH-HHHHHHHHHHH--HhhHHHHhcCcchHhhhhh
Confidence            4688999999999886555554433322211 223456654432222 22344566776  9999999999875      


Q ss_pred             ---C--CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHhhhhccCCCCCcccccc--hhHHH
Q 017235          164 ---K--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG---PFITSLYCLGLFLGTIYSVPPFRMKRFAV--AAFLI  233 (375)
Q Consensus       164 ---~--p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~---~~~~~l~~l~~~l~~~YS~pPl~lKr~~~--~g~l~  233 (375)
                         +  ++||+++|++|+++++.+.+++.++|+.++....+   ...+.+++.+.++++.|+    ..||...  .+. .
T Consensus        79 r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~----~~kr~~~~p~~~-l  153 (297)
T PRK12871         79 RYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQ----VKKRNQKYPVAQ-L  153 (297)
T ss_pred             ccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccccccHHH-H
Confidence               3  37999999999999999999998888877643222   234445556667788897    2333211  122 2


Q ss_pred             HH-HHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHH
Q 017235          234 IA-TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGS  312 (375)
Q Consensus       234 vg-~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~  312 (375)
                      +| ...++ +++++|. .++    .  .+...+++.++.++|+.+++++||++|+|+|+++|+||+|+++|+++++++..
T Consensus       154 ~G~~~~~~-~~~~g~~-~~g----~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~  225 (297)
T PRK12871        154 LGRTDFTL-FPAAGYL-CYG----Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVT  225 (297)
T ss_pred             HHHHHHHH-HHHHHHH-HhC----C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHH
Confidence            33 33343 4555553 232    2  22344456677889999999999999999999999999999999999987666


Q ss_pred             HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Q 017235          313 GLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILA  367 (375)
Q Consensus       313 ~l~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~  367 (375)
                      .+..+.+...+  ++....++  ..+.....+.+.++.+|.+..+.+  +++.|-
T Consensus       226 ~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  274 (297)
T PRK12871        226 GFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEK--SQDAGM  274 (297)
T ss_pred             HHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHH
Confidence            55555443332  22222222  122333355667788888877554  555553

>PLN02776 prenyltransferase

Probab=99.96  E-value=8.9e-27  Score=227.96  Aligned_cols=254  Identities=13%  Similarity=0.102  Sum_probs=180.6

Q ss_pred             HHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--CCccccCcCC
Q 017235           98 FLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YLPIAAGDLS  175 (375)
Q Consensus        98 l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~RPl~sG~ls  175 (375)
                      ++||+.....+++..++.   +++.++.+++..++..+++ ..+..+++|+  +||++|+|+|++|+|  +||+|+|++|
T Consensus         1 L~Kpri~~lv~~ta~~G~---~lA~~~~~~~~~l~~~~lg-~~l~~aaa~~--~N~i~DrdiD~~m~RT~~RPLpsGris   74 (341)
T PLN02776          1 LSKARLSALVVATSGAGF---VLGSGEAIDLPGLGWTCAG-TMLCAASANT--LNQVFEVKNDSKMKRTMRRPLPSGRIS   74 (341)
T ss_pred             CCcchhHHHHHHHHHHHH---HHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence            468888777777666443   4444444566555434333 2456677777  999999999999875  7999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 017235          176 VQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAAL  254 (375)
Q Consensus       176 ~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l-~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~~~~  254 (375)
                      +++|+.+++++.++|+.+.....|+.+..+..+++++ ...||    .+||++.+ |.++|.+.|..+++++|.+.++. 
T Consensus        75 ~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avtg~-  148 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWAAASGQ-  148 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHHHHcCC-
Confidence            9999999999998888665556788888777766555 56899    69999976 57999999988999999988753 


Q ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeee--chhHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 017235          255 GLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKL--GVKNIAFLGSGLLLLNYVAAILAAIYMPQA  332 (375)
Q Consensus       255 g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~l--G~~~a~~l~~~l~l~a~~~~i~~~~~~~~~  332 (375)
                         ++  +..+++.+..++|+........+.|.|||+++|++++|+.-  |+++++.+....+.+..+.++...+... +
T Consensus       149 ---~~--~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~-~  222 (341)
T PLN02776        149 ---LD--AGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT-S  222 (341)
T ss_pred             ---CC--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Confidence               23  33345667778999988888888999999999999999976  5666666665555444433332222211 1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235          333 FRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  373 (375)
Q Consensus       333 ~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~  373 (375)
                        +.+++.+.++.+..+.+++...+.+  |++..++.|.++
T Consensus       223 --~~~~~~a~~l~~~~l~~~~~~~~~~--~~~~ar~~F~~S  259 (341)
T PLN02776        223 --SPFALEAALLTAYLAASAASFYREP--TNANARKMFHGS  259 (341)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence              1245566666667777788777543  344555555543

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.1e-27  Score=226.31  Aligned_cols=266  Identities=18%  Similarity=0.187  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--
Q 017235           88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--  165 (375)
Q Consensus        88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--  165 (375)
                      -+.++|+|++++||+...+..++..++.   +++.++..++..++..+++ .++..+++++  +|+++|+|+|++++|  
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~---~lA~~~~~~~~l~~~~~~g-~~L~a~~a~a--~N~~~DrDID~~M~RT~   87 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGM---LLAPRGSINPLLLLLTLLG-GALGAGGAGA--FNMYIDRDIDALMERTR   87 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHH---HHcccccccHHHHHHHHHH-HHHHHHHHHH--HhhhhhhhHHHhhhhcc
Confidence            4678999999999999988888777544   4554344566655544433 3455666666  999999999999987  


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235          166 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  244 (375)
Q Consensus       166 ~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l-~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~  244 (375)
                      +||+++|+++++|++.++.++.++|+.+..+..|+....+++++++. .++||.   .+||++. -|+++|...|..+++
T Consensus        88 ~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~-~NiviGg~aGa~Ppl  163 (304)
T COG0109          88 KRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTP-QNIVIGGFAGAMPPL  163 (304)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcc-cceeeeecccccccc
Confidence            69999999999999999999999999887667899888777777654 569995   8999987 489999999999999


Q ss_pred             HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235          245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  324 (375)
Q Consensus       245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~  324 (375)
                      ++|.+.++..    ++....  +...+++|+...-..=.+.-+||.+++|+.++|+.-|++.+++......++.....+.
T Consensus       164 iGwaAvtg~~----~~~a~~--Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~  237 (304)
T COG0109         164 IGWAAVTGSI----SLGAIL--LFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLL  237 (304)
T ss_pred             ceeeeeeCCC----CchHHH--HHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887633    333333  3344455554433333444566779999999999999998877554333222222221


Q ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235          325 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  373 (375)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~  373 (375)
                      ..+   .+....+|.+..+++++.+++..++...++ +++..++-|+++
T Consensus       238 ~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~-~~~~A~klF~~S  282 (304)
T COG0109         238 LAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKD-DRKWARKLFKYS  282 (304)
T ss_pred             HHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHH
Confidence            111   111223567777788888888888886664 555555555543

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=4e-26  Score=219.56  Aligned_cols=223  Identities=22%  Similarity=0.168  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCC
Q 017235           88 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYL  167 (375)
Q Consensus        88 ~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~R  167 (375)
                      ..++++.++++.||+++..+..+++.+.+.+.-..+...++..+  .++.. .++.++.+++++||++|+|+|+.|+|++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~~-~~i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFAY-FLFPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHHH-HHHHHHHHHhcchhhhhhhccccCCCcc
Confidence            35678889999999999988888876554331111122333211  22222 2244556667799999999999998765


Q ss_pred             ccccCcCC--HHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHH
Q 017235          168 PIAAGDLS--VQSAWFL-VIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  244 (375)
Q Consensus       168 Pl~sG~ls--~~~a~~~-~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~  244 (375)
                      .  .+.+.  .+.+... ......+++.+.. ..++....+.+..++..+.||.||+|+|+++..+..+.|..  ..+..
T Consensus        81 ~--~r~~~~s~~~~~~~~~~l~~~l~l~l~~-~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~--~~~~~  155 (282)
T PRK12875         81 R--EREVRYRGDRRVLVAVALSGALALAFLL-VLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY--ILPGV  155 (282)
T ss_pred             C--CCCccHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHH--HHHHH
Confidence            4  11122  1211111 1112222332222 22444333334557788999999999999998654433332  34556


Q ss_pred             HHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHH
Q 017235          245 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  324 (375)
Q Consensus       245 g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~  324 (375)
                      ++|.++++.      .++..+++  ..++|+.+++++||+||+|+|+++|+||+|+++|++++++++.++++++......
T Consensus       156 ~~y~~~tg~------~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~  227 (282)
T PRK12875        156 AAYALVSGS------LPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAA  227 (282)
T ss_pred             HHHHHHcCC------CcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHH
Confidence            777766542      22333333  3468999999999999999999999999999999999999988888877766655


Q ss_pred             HH
Q 017235          325 AA  326 (375)
Q Consensus       325 ~~  326 (375)
                      .+
T Consensus       228 ~~  229 (282)
T PRK12875        228 VD  229 (282)
T ss_pred             HH
Confidence            44

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=1.2e-25  Score=216.62  Aligned_cols=214  Identities=21%  Similarity=0.219  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCCcc
Q 017235           90 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI  169 (375)
Q Consensus        90 ~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl  169 (375)
                      ...++.+++.+-...+  .+++......+..-.+..+++...+     ..+++..++|+  +||++|+|+|++|+|+||.
T Consensus        25 ~~~~~~~~~~~ss~~~--a~~a~~~~~~a~lL~g~~~~~~~~~-----~~~L~~~s~~~--iNd~~D~eiD~IN~P~r~~   95 (307)
T PRK13591         25 KFLNATFELLNSSTLV--AFSGALRIHIAFLLLGLQSSILTCI-----AGGLIIYSVYT--LDRALDSEEDAVNRSELIG   95 (307)
T ss_pred             HHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHhCCCcchHHHH-----HHHHHHHHHHH--HhhhccchhhhccCccccc
Confidence            3455566775444432  3333322222222223335555332     23466778888  9999999999999999998


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCC----C--CCcccccchhHHHHHHHHHHHHH
Q 017235          170 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVP----P--FRMKRFAVAAFLIIATVRGFLLN  243 (375)
Q Consensus       170 ~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~p----P--l~lKr~~~~g~l~vg~~~G~~~~  243 (375)
                      +    +++.++.+..+..++|+.+++ ..|+..  +++++.+.+++||.+    |  +++|+++.+||+++++.+|....
T Consensus        96 ~----s~~~a~~ls~la~llGl~La~-~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~  168 (307)
T PRK13591         96 S----NKKIGLLVSLLAFLLGTYILA-MDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIA  168 (307)
T ss_pred             c----CHHHHHHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHH
Confidence            6    788888888888888887764 456543  456777889999975    4  48899999999999999998543


Q ss_pred             HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235          244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  323 (375)
Q Consensus       244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i  323 (375)
                      .+.   ... .+   .+ .+...+.++.....++++++||++|+|+|+++|++|+|+++|+++++++...+.+++++..+
T Consensus       169 g~~---g~~-~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li  240 (307)
T PRK13591        169 GIA---GSY-CG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLG  240 (307)
T ss_pred             HHH---Hhh-hh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence            221   110 00   11 11111222222334667789999999999999999999999999999999999988888776


Q ss_pred             HHHH
Q 017235          324 LAAI  327 (375)
Q Consensus       324 ~~~~  327 (375)
                      ...+
T Consensus       241 ~~~~  244 (307)
T PRK13591        241 IALI  244 (307)
T ss_pred             HHHH
Confidence            5544

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.95  E-value=9.3e-28  Score=222.62  Aligned_cols=264  Identities=20%  Similarity=0.152  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHH-HHHHHHHHcCCCC-CcHHHHHHHHHHHHH-HHHHhhhhhhccccccccccccCCC
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSV-ALVARALIENPNL-IKWSLLLKAFSGLLA-LICGNGYIVGINQIYDIGIDKVNKP  165 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~-~~~~~a~~~~~~~-~~~~~ll~~l~~~v~-lv~a~~~v~~iNd~~D~~~D~~n~p  165 (375)
                      +.+++.|.|++|.+.++||.+-.. +.|..++.+..+. ++...+  .+++..+ ++.++||+  |||..|+|+|++.+|
T Consensus        61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL--~LFG~GAllMRgAGCt--INDlwDkdlD~KVeR  136 (353)
T KOG1381|consen   61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKML--ALFGVGALLMRGAGCT--INDLWDKDLDAKVER  136 (353)
T ss_pred             CccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHH--HHhcccHHHhccCCce--ehhhhhhhhhhhHhh
Confidence            344999999999999999887655 5555554444443 333322  3455444 35689998  999999999999987


Q ss_pred             --CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHH
Q 017235          166 --YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  243 (375)
Q Consensus       166 --~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~  243 (375)
                        .||+++|++|+++|..+..+...+|+.+. .++|+..+.++..++.+.+.|+    -+||++.+++++.|..+++-..
T Consensus       137 tklRPlAsG~ls~~qaI~fL~~ql~~gLgiL-lqLn~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLgltfnwGAl  211 (353)
T KOG1381|consen  137 TKLRPLASGSLSPRQAIGFLGAQLSLGLGIL-LQLNWYSIALGASSLALVITYP----LMKRFTYWPQLVLGLTFNWGAL  211 (353)
T ss_pred             hcccccccCCcchhHHHHHHHHHHHHhHHHH-HhccHHHHHhcccccccEEEee----hhhhcchhHHHHHhhhcchhhh
Confidence              59999999999999998888888787664 4689999888888888889998    7999999999887776655433


Q ss_pred             HHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHHHHHHH
Q 017235          244 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  323 (375)
Q Consensus       244 ~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i  323 (375)
                      + +|-+..+...    .+.. +-+.+-..+|++.+|++|++||+++|.+.|+|+.+.++|+++-.|+.. +.......+.
T Consensus       212 l-Gw~A~~g~~~----~s~~-~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La  284 (353)
T KOG1381|consen  212 L-GWCALKGSLS----PSAV-LPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLA  284 (353)
T ss_pred             h-cchhhcCccC----hhhh-hHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHH
Confidence            3 3444433221    1111 112233348999999999999999999999999999999997777655 4455666666


Q ss_pred             HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhc
Q 017235          324 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  373 (375)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~f~~~~  373 (375)
                      ..|+...|+|  ++| ++..+.+..|.+|.+.+|.|  ++.+|-++++-+
T Consensus       285 ~aG~~s~q~~--pyy-~~lg~~~~~L~~~i~~vdiD--np~dC~k~f~sN  329 (353)
T KOG1381|consen  285 AAGIASDQTW--PYY-AALGAVAARLGSQIYKVDID--NPSDCWKKFKSN  329 (353)
T ss_pred             HhhhccCCCc--hHH-HHHHHHHHHHHhheeeeecC--ChHHHHHHHHhc
Confidence            7788888886  233 44788899999999999986  777888887654

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=4.9e-26  Score=217.56  Aligned_cols=216  Identities=13%  Similarity=0.058  Sum_probs=148.4

Q ss_pred             HHHHHHhhhhhhccccccccccccCCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc--
Q 017235          139 LALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIY--  216 (375)
Q Consensus       139 v~lv~a~~~v~~iNd~~D~~~D~~n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~Y--  216 (375)
                      ++++++++++  +||++|+|+|++|+|+||+|||++|+++++.++.++.++++.+...     + .......++.+.|  
T Consensus        55 vf~~~~~gni--iNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l-----~-~i~i~~~~i~~lY~~  126 (299)
T PRK13592         55 VFGFWMILRI--ADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVL-----F-MNNVGWFLFLYIYGT  126 (299)
T ss_pred             HHHHHHHhHH--HHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHH
Confidence            4567888898  9999999999999999999999999999999998886666655432     2 1122333445566  


Q ss_pred             ---cCCCCCcccccchhHHHHHHHHHHHHHHH--HHHHH--HhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHH
Q 017235          217 ---SVPPFRMKRFAVAAFLIIATVRGFLLNFG--VYYAT--RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEG  289 (375)
Q Consensus       217 ---S~pPl~lKr~~~~g~l~vg~~~G~~~~~g--~~~a~--~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~eg  289 (375)
                         +.   ++|+.++.||+.++...|..+..|  .|.+.  ....|.+ ......+++++..++.++++|+.+|++| ||
T Consensus       127 lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD-~g  201 (299)
T PRK13592        127 LMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA-PK  201 (299)
T ss_pred             HHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-Cc
Confidence               75   899999999999999999866443  12111  1112211 1112113345667788999999999999 88


Q ss_pred             hHhCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCC---HHH
Q 017235          290 DRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI-YMPQAFRRNLMIPAHVILASCLLFQTWLLERANYT---KVI  365 (375)
Q Consensus       290 Dr~~Gi~TLpv~lG~~~a~~l~~~l~l~a~~~~i~~~~-~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~---~~~  365 (375)
                      |++ |.+|+|+++|.|++.++..++.+++.+..++.-+ ....++      +..++..+.+.++..+.-.++..   ++.
T Consensus       202 d~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~------~~l~~~~~~~l~~~~~~lk~p~~~~~~~~  274 (299)
T PRK13592        202 DET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGV------VVLVLNVIWMTVQFEQFIKSPTRFNIRER  274 (299)
T ss_pred             ccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHH------HHHHHHHHHHHHHHHHHhcCCCcchhhHH
Confidence            886 5999999999999999999888887776553322 111111      22224446667777755433312   247


Q ss_pred             HHHHHHhcc
Q 017235          366 LATCCTLGM  374 (375)
Q Consensus       366 ~~~f~~~~~  374 (375)
                      .+++.|.+|
T Consensus       275 ~~~~~ki~~  283 (299)
T PRK13592        275 VERYTYITE  283 (299)
T ss_pred             HHHHHHHHH
Confidence            778887776

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.94  E-value=1.2e-25  Score=211.77  Aligned_cols=175  Identities=30%  Similarity=0.572  Sum_probs=135.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhhhhhhcccccccccccc--CCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017235          123 PNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKV--NKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGP  200 (375)
Q Consensus       123 ~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~--n~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~  200 (375)
                      +...++..+...++++ .+....+|.  +||+.|+|+|++  |+|+||+++|+++++++..++.++.+++++++ +..++
T Consensus        17 ~~~~~~~~~~~~~l~~-~~~~~~~~~--~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~-~~~~~   92 (257)
T PF01040_consen   17 GGPFNWPIFLLGLLAV-FLLQLAVYL--LNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLA-LLLGP   92 (257)
T ss_pred             cCCCCHHHHHHHHHHH-HHHHHHHHH--hhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHH-HhcCc
Confidence            3345554443322222 244556666  999999999999  78999999999999999998888888888776 44678


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHH
Q 017235          201 FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAV  280 (375)
Q Consensus       201 ~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i  280 (375)
                      ..+.+..++.+.+++|| ||+++||+++++++++++..|..+..+.+. ..+      +++.+.++.+.+.+++......
T Consensus        93 ~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~  164 (257)
T PF01040_consen   93 WFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGG------DPPPPPFLLAIFFFLLIFAIMF  164 (257)
T ss_pred             hhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCC------cccHHHHHHHHHHHHHHHHHHH
Confidence            77777777788889999 889999999999999999888765555443 221      2234444555666677888888


Q ss_pred             HccCCChHHhHhCCCCcceeeechhHHHH
Q 017235          281 TKDLPDVEGDRKFKISTLATKLGVKNIAF  309 (375)
Q Consensus       281 ~~di~D~egDr~~Gi~TLpv~lG~~~a~~  309 (375)
                      .+|++|+|+|++.|+||+|+++|+++++.
T Consensus       165 ~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  165 FNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            88999999999999999999999999988

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.85  E-value=3.7e-19  Score=172.10  Aligned_cols=149  Identities=24%  Similarity=0.285  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC--CCC
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KPY  166 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n--~p~  166 (375)
                      .+++++|++++|||++.++.+...+++.+.-..  +...+...+.+++ .++++.+++|+  +||++|+|+|++|  +|+
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~--~~~~~~~~llafl-~~~l~~sa~y~--iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLL--NPGALLKVLLAFV-LFCLASSAVYL--VNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhc--ccchHHHHHHHHH-HHHHHHHHHHH--HHhHHHHHhhccCCCCCC
Confidence            456889999999999998887666543221111  1112222222222 23455677777  9999999999998  568


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 017235          167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV  246 (375)
Q Consensus       167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g~  246 (375)
                      ||+++|++|+++++.++.++.++|+.++. ..|+.+..+.+..+++.++||.   ++||++.+++++++...+.-+..|+
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~  158 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGG  158 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888887764 4677776666666777889994   8999999999888877776545443

>PRK08238 hypothetical protein; Validated

Probab=99.82  E-value=3.2e-18  Score=175.81  Aligned_cols=188  Identities=23%  Similarity=0.289  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccC-
Q 017235           87 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN-  163 (375)
Q Consensus        87 ~~~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~--~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n-  163 (375)
                      ..+..+++|++++|||++.++.+..++..    .+..  +...+...+.+++ .++++.+++|+  +||++|+|+|++| 
T Consensus       186 ~~~~~~~~~~~l~Rp~q~~kn~l~~~p~l----~a~~~~~~~~~~~~~~~f~-~~~l~~sa~~~--~ND~~D~e~Dr~~~  258 (479)
T PRK08238        186 PRPARLRTWLKALRVHQWAKNLLVFVPLL----AAHQFGDLQALLAALLAFL-AFSLCASAVYI--LNDLLDLEADRAHP  258 (479)
T ss_pred             CCchHHHHHHHHhCCcHHHHHHHHHHHHH----HhcccCChHHHHHHHHHHH-HHHHHHHHHHH--HHhhHHhhhhccCC
Confidence            34567899999999999999988766433    2211  1111222221222 23466778887  9999999999999 


Q ss_pred             -CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHHHHHH
Q 017235          164 -KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL  242 (375)
Q Consensus       164 -~p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~  242 (375)
                       +|+||+++|++|+++|+.++.+++++|+.+++. .|+.++.+.+..+++.++||.   ++||+++++++++|+..++-+
T Consensus       259 rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~-l~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~  334 (479)
T PRK08238        259 RKRRRPFASGALPIPFGLAAAPLLLLAGLALALA-LGPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRI  334 (479)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHH
Confidence             468999999999999999999999999877654 677666665666777889993   899999999999988877755


Q ss_pred             HHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCC
Q 017235          243 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKI  295 (375)
Q Consensus       243 ~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi  295 (375)
                      ..|+. +.    +  .+.+.  |++ .+.++..+...+.|...|.++++..|.
T Consensus       335 ~~G~~-a~----~--~~~s~--wll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        335 IAGAA-AI----G--VALSF--WLL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHH-Hh----c--cCHHH--HHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            55532 22    1  12222  222 223344556677899999999999886

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.52  E-value=3.1e-15  Score=142.53  Aligned_cols=211  Identities=18%  Similarity=0.231  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC--C
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--Y  166 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~lv~a~~~v~~iNd~~D~~~D~~n~p--~  166 (375)
                      ....+.|+|++||+.-..+++...++++   ++.+ .+++..++..-++. +++.++.|.  +||+++...|.+++|  .
T Consensus        91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYa---lap~-p~s~~~l~~~tvGT-~L~S~sANa--iNQ~~E~~~DsqM~RT~~  163 (409)
T KOG1380|consen   91 GKYARCYLELSKPRLTMLVVLTTMTGYA---LAPG-PFSFPTLLYTTVGT-GLCSASANA--INQIFEPPFDSQMKRTQN  163 (409)
T ss_pred             cchHHHHHHhcccceEEEEeeecccccc---cccc-CCCcchhHHHhhhh-HHHHhhhHh--hhhhccCCchhhhHhhcc
Confidence            3567899999999986555555554432   3333 35555554332232 344455555  999999999999987  6


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhhhccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 017235          167 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  245 (375)
Q Consensus       167 RPl~sG~ls~~~a~~~~~~l~i~gl~l~~~~~~~~~~~l~~l~~~-l~~~YS~pPl~lKr~~~~g~l~vg~~~G~~~~~g  245 (375)
                      ||+++|++|+..|+.++.+..+.|+.+.++..||....++..-++ ...+|+    .+||..+ .|.++|.+.|.++++.
T Consensus       164 Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAIPPLM  238 (409)
T KOG1380|consen  164 RPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAIPPLM  238 (409)
T ss_pred             cccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccCCccc
Confidence            999999999999999999888888776666678988877765444 356899    8999875 6889999999999999


Q ss_pred             HHHHHHhhhccCccchHHHHHHHHHHHHHHHHH--HHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHHHHHH
Q 017235          246 VYYATRAALGLSFEWNAPVAFITAFVTLFALVI--AVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLLNY  319 (375)
Q Consensus       246 ~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~--~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~l~a~  319 (375)
                      +|.+.++..+      +..++++...+.|.+-.  .+-.++  .++..+.|.+++++.=-   .+.+.+....++.+++
T Consensus       239 GwAAasg~l~------~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~  309 (409)
T KOG1380|consen  239 GWAAASGLLD------PGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY  309 (409)
T ss_pred             hhhhhccCCC------ccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence            9988765332      23344444555554431  122233  34568999999998743   3445555555555553

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.24  E-value=5.8e-12  Score=115.33  Aligned_cols=227  Identities=20%  Similarity=0.158  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH--HHHHhhhhhhccccccc--cccccCC
Q 017235           89 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLA--LICGNGYIVGINQIYDI--GIDKVNK  164 (375)
Q Consensus        89 ~~~l~~~~~l~Rp~~~~g~~l~~~~~~~~a~~~~~~~~~~~~ll~~l~~~v~--lv~a~~~v~~iNd~~D~--~~D~~n~  164 (375)
                      .++.+.|+--.||....+...+...+.+.+. ...+..++.+.- .++..++  .+..++++  .|.|+|.  .+|++..
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalay-rs~~~~d~~l~~-~fl~a~avlavh~agnl--vntyfdf~kgid~kka  133 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAY-RSHGAEDFRLAT-FFLCAFAVLAVHCAGNL--VNTYFDFIKGIDHKKA  133 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHH-hhccccchhHHH-HHHHHhhheeeecccch--hhhhhhhhhccccccc
Confidence            5678889999999987666555554443332 222223333321 1122222  34577888  9999997  5888777


Q ss_pred             CCCccccCcCCHHHHHHHHHHHHHHHHHHHH--HhHHHHH----HHHHHHHHHhhhhccCCCCCcccccchhHHHHHHHH
Q 017235          165 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA--FNFGPFI----TSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVR  238 (375)
Q Consensus       165 p~RPl~sG~ls~~~a~~~~~~l~i~gl~l~~--~~~~~~~----~~l~~l~~~l~~~YS~pPl~lKr~~~~g~l~vg~~~  238 (375)
                      .+|.++...+.+.++..++..+...|+....  ..+.|.-    .++...++--.++|+.+ +-+|+.. +|.+++-+.+
T Consensus       134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg-igfkyia-lgdliili~f  211 (359)
T KOG4581|consen  134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG-IGFKYIA-LGDLIILILF  211 (359)
T ss_pred             cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc-cceEEEe-ccCEEEEEee
Confidence            7899999999999999888888777765432  1233431    12222333345789864 5778775 4777777778


Q ss_pred             HHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHHHHHHHccCCChHHhHhCCCCcceeeechhHHHHHHHHHHHHH
Q 017235          239 GFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN  318 (375)
Q Consensus       239 G~~~~~g~~~a~~~~~g~~~~~~~~~~~l~l~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~~~a~~l~~~l~l~a  318 (375)
                      |.+.++-+|..+++.+    .|.+-  ..+++..+-+-++..-|+.+|.|.||++|+-|+++.+|...+-.++..++.+.
T Consensus       212 gpiavlfaf~~q~g~l----~~~~l--~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~p  285 (359)
T KOG4581|consen  212 GPIAVLFAFAIQTGHL----AIFPL--GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAP  285 (359)
T ss_pred             chHHHHHHHHHhcCce----eEEee--hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHH
Confidence            8876666666555433    23221  23444556677788899999999999999999999999999988988888888


Q ss_pred             HHHHHHHHH
Q 017235          319 YVAAILAAI  327 (375)
Q Consensus       319 ~~~~i~~~~  327 (375)
                      |.+..+.+.
T Consensus       286 y~lf~i~~~  294 (359)
T KOG4581|consen  286 YLLFFIFAL  294 (359)
T ss_pred             HHHHHHHHH
Confidence            877665543

>PRK13595 ubiA prenyltransferase; Provisional

Probab=90.60  E-value=5.2  Score=39.07  Aligned_cols=41  Identities=24%  Similarity=0.152  Sum_probs=25.2

Q ss_pred             HHHHHHHHHccCCChHHhHhCCCCccee---eechhHHHHHHHHH
Q 017235          273 LFALVIAVTKDLPDVEGDRKFKISTLAT---KLGVKNIAFLGSGL  314 (375)
Q Consensus       273 l~~~~~~i~~di~D~egDr~~Gi~TLpv---~lG~~~a~~l~~~l  314 (375)
                      ........+||+-|.|.|+++-++ =++   ++..+.++.+...+
T Consensus        58 p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~  101 (292)
T PRK13595         58 PFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAV  101 (292)
T ss_pred             HHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHH
Confidence            344456789999999999977654 344   33344444443333

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=90.58  E-value=3.6  Score=40.32  Aligned_cols=22  Identities=32%  Similarity=0.276  Sum_probs=17.7

Q ss_pred             hhhhhhccccccccccccCCCC
Q 017235          145 NGYIVGINQIYDIGIDKVNKPY  166 (375)
Q Consensus       145 ~~~v~~iNd~~D~~~D~~n~p~  166 (375)
                      .++++-.|+..|.|+|++|+|+
T Consensus       189 ~~~Il~aNNirDie~D~~~gk~  210 (303)
T COG1575         189 IANILLANNLRDIEEDIRNGKY  210 (303)
T ss_pred             HHHHHHhcccccchhHHhcCCc
Confidence            4445448999999999999875

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=90.53  E-value=4  Score=40.07  Aligned_cols=36  Identities=11%  Similarity=0.033  Sum_probs=22.8

Q ss_pred             hhhhccccccccccccCCC-CCccccCcCCHHHHHHHHHH
Q 017235          147 YIVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIF  185 (375)
Q Consensus       147 ~v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~  185 (375)
                      +++-.||+-|+|.|+.+.+ +-|.   ++.++.+..+...
T Consensus       189 ~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~  225 (304)
T PRK07419        189 LILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPW  225 (304)
T ss_pred             HHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHH
Confidence            3334899999999999865 4444   3444555444333

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=90.20  E-value=1.9  Score=41.28  Aligned_cols=43  Identities=19%  Similarity=0.034  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHH
Q 017235          271 VTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL  314 (375)
Q Consensus       271 ~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l  314 (375)
                      .++...+-.++||+.|.|.|+++ ++.=|..-|+   +.+..+..++
T Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~   91 (279)
T PRK12884         46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILL   91 (279)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHH
Confidence            34555566789999999999999 7888888775   4444444433

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=89.60  E-value=3.7  Score=40.36  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=18.4

Q ss_pred             hccccccccccccCC-CCCccccCc
Q 017235          150 GINQIYDIGIDKVNK-PYLPIAAGD  173 (375)
Q Consensus       150 ~iNd~~D~~~D~~n~-p~RPl~sG~  173 (375)
                      ..||+.|+|.|+.+. |+-|+.-|+
T Consensus       207 ~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        207 TLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHhHhHHHcCCcccceeEcH
Confidence            379999999999874 566775554

>PRK13592 ubiA prenyltransferase; Provisional

Probab=89.56  E-value=8.6  Score=37.64  Aligned_cols=45  Identities=27%  Similarity=0.350  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHHHH
Q 017235          271 VTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGLLL  316 (375)
Q Consensus       271 ~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l~l  316 (375)
                      +++.+.+-.++||+.|+|-|+.+ ++.=|+-=|+   +.++.++..+..
T Consensus        55 vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~  102 (299)
T PRK13592         55 VFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVA  102 (299)
T ss_pred             HHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHH
Confidence            44555667889999999999665 5666665554   555555544433

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=88.22  E-value=3.3  Score=40.52  Aligned_cols=45  Identities=11%  Similarity=-0.062  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHHHH
Q 017235          272 TLFALVIAVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLL  317 (375)
Q Consensus       272 ~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~l~  317 (375)
                      .+...+-+.+||+-|.|.|++++. +=|+.-|   .+.+..+...+..+
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~  111 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIA  111 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHH
Confidence            345556688999999999998773 4455555   44444444434333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=87.24  E-value=8.2  Score=37.48  Aligned_cols=40  Identities=13%  Similarity=0.025  Sum_probs=25.0

Q ss_pred             hhhccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHHHH
Q 017235          148 IVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTG  190 (375)
Q Consensus       148 v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i~g  190 (375)
                      ++-.||.-|+|.|+.+.+ +-|.   ++.++.+..+...+..++
T Consensus       177 iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~  217 (285)
T TIGR02235       177 ILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLS  217 (285)
T ss_pred             HHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHH
Confidence            333799999999999865 4444   444555555444443333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=86.97  E-value=11  Score=37.12  Aligned_cols=31  Identities=23%  Similarity=0.141  Sum_probs=22.3

Q ss_pred             HccCCChHHhHhCCCCcceeeech---hHHHHHHH
Q 017235          281 TKDLPDVEGDRKFKISTLATKLGV---KNIAFLGS  312 (375)
Q Consensus       281 ~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~  312 (375)
                      +||+.|+|-|+.+ +++.|+.=|+   +.++.+..
T Consensus        72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~  105 (308)
T PRK12887         72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVI  105 (308)
T ss_pred             HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHH
Confidence            9999999999965 5788876665   44444333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=86.83  E-value=15  Score=35.22  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=17.8

Q ss_pred             ccccccccccccCC-CCCccccCc
Q 017235          151 INQIYDIGIDKVNK-PYLPIAAGD  173 (375)
Q Consensus       151 iNd~~D~~~D~~n~-p~RPl~sG~  173 (375)
                      +||.-|+|.|+.++ ++-|..-|+
T Consensus       180 ~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        180 VFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHhcccchhHHHcCCcccchhcch
Confidence            79999999999875 456765554

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=86.63  E-value=3.9  Score=37.99  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHccCCChHHhHhC-CCCcceeeechhH
Q 017235          272 TLFALVIAVTKDLPDVEGDRKF-KISTLATKLGVKN  306 (375)
Q Consensus       272 ~l~~~~~~i~~di~D~egDr~~-Gi~TLpv~lG~~~  306 (375)
                      ++.....+..||+.|.|.|+.. +.+.-|..-|+-+
T Consensus        33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            3556677889999999999996 3455566556543

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN00012 chlorophyll synthetase; Provisional

Probab=86.21  E-value=9.6  Score=38.55  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=18.4

Q ss_pred             ccccccccccccCC-CCCccccCc
Q 017235          151 INQIYDIGIDKVNK-PYLPIAAGD  173 (375)
Q Consensus       151 iNd~~D~~~D~~n~-p~RPl~sG~  173 (375)
                      .||+-|+|.|+... +.-|..-|+
T Consensus       271 vnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        271 VNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HhhhcchhhHHHcCCcccceeech
Confidence            79999999999764 667776664

>PRK13591 ubiA prenyltransferase; Provisional

Probab=86.08  E-value=4.4  Score=39.84  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=17.7

Q ss_pred             ccccccccccccCCC-CCccccC
Q 017235          151 INQIYDIGIDKVNKP-YLPIAAG  172 (375)
Q Consensus       151 iNd~~D~~~D~~n~p-~RPl~sG  172 (375)
                      +||+-|.|.|+.+.+ +-|+.=|
T Consensus       198 indirDiEGDr~~G~kTLPV~lG  220 (307)
T PRK13591        198 VYDFKDVKGDTLAGIKTLPVSLG  220 (307)
T ss_pred             HHHhhhhHhHHHcCCeeEEEEEC
Confidence            799999999999864 5676544

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=85.74  E-value=4  Score=40.22  Aligned_cols=40  Identities=18%  Similarity=0.143  Sum_probs=25.1

Q ss_pred             hhhccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHHHH
Q 017235          148 IVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTG  190 (375)
Q Consensus       148 v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i~g  190 (375)
                      ++-.||+-|+|.|+.+.+ +-|.   ++.++.+..+...+.+++
T Consensus       205 ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a  245 (317)
T PRK13387        205 IMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS  245 (317)
T ss_pred             HHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence            333899999999999865 4444   444555555444444333

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=85.58  E-value=12  Score=36.07  Aligned_cols=37  Identities=24%  Similarity=-0.002  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235          268 TAFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  304 (375)
Q Consensus       268 ~l~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~  304 (375)
                      .+..++...+...+||+.|+|-|+++-+ +.=|..-|+
T Consensus        53 ~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          53 FLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence            3344456667788999999999999877 455665554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=85.48  E-value=4.5  Score=39.37  Aligned_cols=33  Identities=21%  Similarity=0.136  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235          272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  304 (375)
Q Consensus       272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~  304 (375)
                      ++...+-..+||+.|+|-|+++.+ +.=|+.-|+
T Consensus        55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   88 (289)
T PLN02809         55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA   88 (289)
T ss_pred             HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence            345555678999999999998876 577877785

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=85.47  E-value=9.1  Score=37.40  Aligned_cols=46  Identities=26%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             HHHHHHHHHccCCChHHhHhCC-CCcceeeec---hhHHHHHHHHHHHHH
Q 017235          273 LFALVIAVTKDLPDVEGDRKFK-ISTLATKLG---VKNIAFLGSGLLLLN  318 (375)
Q Consensus       273 l~~~~~~i~~di~D~egDr~~G-i~TLpv~lG---~~~a~~l~~~l~l~a  318 (375)
                      +...+..++||+.|+|.||++- ++.=|..=|   .+.+..+..++..++
T Consensus        57 l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~  106 (295)
T PRK12324         57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS  106 (295)
T ss_pred             HHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence            4455667899999999999962 233344444   454544444443333

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=84.49  E-value=11  Score=36.26  Aligned_cols=48  Identities=23%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHHHHHH
Q 017235          270 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGLLLLN  318 (375)
Q Consensus       270 ~~~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l~l~a  318 (375)
                      ..++...+-..+||+-|.|-|+++. +.=|+.-|+   +.+..+...+..++
T Consensus        45 ~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~   95 (279)
T PRK09573         45 VVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVG   95 (279)
T ss_pred             HHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHH
Confidence            3345566667899999999999864 555655554   55555444444333

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=83.39  E-value=6.9  Score=37.48  Aligned_cols=45  Identities=18%  Similarity=0.013  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHccCCChHHhHhCCCCcceeeech---hHHHHHHHHHHHH
Q 017235          272 TLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGLLLL  317 (375)
Q Consensus       272 ~l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG~---~~a~~l~~~l~l~  317 (375)
                      ++...+-..+||+-|.|-|+++. +.=|+.-|+   +.+..+..++.++
T Consensus        48 ~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~   95 (276)
T PRK12882         48 FLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAA   95 (276)
T ss_pred             HHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHH
Confidence            34455567899999999999754 666777765   4444444444333

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=83.10  E-value=4.1  Score=39.19  Aligned_cols=42  Identities=14%  Similarity=-0.005  Sum_probs=27.3

Q ss_pred             HHHHHHHHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHH
Q 017235          273 LFALVIAVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLL  315 (375)
Q Consensus       273 l~~~~~~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~  315 (375)
                      +...+-+.+||+-|.|.|++++ ++=|+.-|   ++.++.+..++.
T Consensus        49 l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~   93 (283)
T TIGR01476        49 LGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLT   93 (283)
T ss_pred             HHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHH
Confidence            4555667899999999999876 44555444   344555444333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=82.16  E-value=8.4  Score=38.27  Aligned_cols=41  Identities=27%  Similarity=0.182  Sum_probs=26.6

Q ss_pred             HHHHccCCChHHhHhCCCCcceeeec---hhHHHHHHHHHHHHHH
Q 017235          278 IAVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLLNY  319 (375)
Q Consensus       278 ~~i~~di~D~egDr~~Gi~TLpv~lG---~~~a~~l~~~l~l~a~  319 (375)
                      -..+||+-|.|.|+.++ ||=|+.-|   ++.+..+...+..++.
T Consensus        66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~  109 (331)
T PRK12392         66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAI  109 (331)
T ss_pred             HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHH
Confidence            36799999999999765 45555555   4555555544444433

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=82.00  E-value=6.5  Score=37.93  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHccCCChHHhHhCCC-Ccceeeech
Q 017235          272 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  304 (375)
Q Consensus       272 ~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG~  304 (375)
                      ++...+-..+||+.|.|-|++..+ ++=|+.-|+
T Consensus        55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~   88 (285)
T PRK12847         55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGA   88 (285)
T ss_pred             HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCC
Confidence            345556678999999999997665 355665564

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=81.81  E-value=30  Score=33.58  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHccCCChHHhHhCCCCc----ceeeec---hhHHHHHHHHHHHHH
Q 017235          271 VTLFALVIAVTKDLPDVEGDRKFKIST----LATKLG---VKNIAFLGSGLLLLN  318 (375)
Q Consensus       271 ~~l~~~~~~i~~di~D~egDr~~Gi~T----Lpv~lG---~~~a~~l~~~l~l~a  318 (375)
                      ..+...+-...||+.|.|.|+....||    =|+.-|   .+.+..+..++..++
T Consensus        49 ~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia  103 (296)
T PRK05951         49 YFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA  103 (296)
T ss_pred             HHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence            335556667899999966665554222    333333   455555544443333

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=81.61  E-value=22  Score=34.51  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=24.0

Q ss_pred             hhhccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHH
Q 017235          148 IVGINQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAV  188 (375)
Q Consensus       148 v~~iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i  188 (375)
                      +.-.||.-|+|.|+.+.+ +-|.   ++..+.+..+...+..
T Consensus       180 il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~~  218 (284)
T TIGR00751       180 VLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLLA  218 (284)
T ss_pred             HHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHHH
Confidence            333799999999998865 3343   4555555554444333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=81.23  E-value=15  Score=35.47  Aligned_cols=45  Identities=24%  Similarity=0.071  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHccCCChHHhHhCCC-Ccceeeec---hhHHHHHHHHH
Q 017235          270 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLG---VKNIAFLGSGL  314 (375)
Q Consensus       270 ~~~l~~~~~~i~~di~D~egDr~~Gi-~TLpv~lG---~~~a~~l~~~l  314 (375)
                      ...+...+-..+||+.|.|-|+++.+ +.=|..-|   ++.+..+...+
T Consensus        44 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~   92 (279)
T PRK12869         44 GGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSAL   92 (279)
T ss_pred             HHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHH
Confidence            33344566688999999999998764 33444444   45554444333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=81.16  E-value=23  Score=34.42  Aligned_cols=40  Identities=10%  Similarity=0.106  Sum_probs=28.2

Q ss_pred             ccccccccccccCCC-CCccccCcCCHHHHHHHHHHHHHHHHHH
Q 017235          151 INQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTGLLI  193 (375)
Q Consensus       151 iNd~~D~~~D~~n~p-~RPl~sG~ls~~~a~~~~~~l~i~gl~l  193 (375)
                      +||+-|+|.||.+.. +-|.   ++.++.+..+...+.+++.++
T Consensus       179 i~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~  219 (282)
T PRK13105        179 FGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVL  219 (282)
T ss_pred             HHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHH
Confidence            899999999998753 4444   566777777766666555543

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=80.45  E-value=52  Score=31.88  Aligned_cols=38  Identities=13%  Similarity=0.048  Sum_probs=24.2

Q ss_pred             ccccccccccccCC-CCCccccCcCCHHHHHHHHHHHHHHHH
Q 017235          151 INQIYDIGIDKVNK-PYLPIAAGDLSVQSAWFLVIFFAVTGL  191 (375)
Q Consensus       151 iNd~~D~~~D~~n~-p~RPl~sG~ls~~~a~~~~~~l~i~gl  191 (375)
                      +||+-|+|.|++.. ++-|.   ++..+.+..+...+.+++.
T Consensus       184 in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~  222 (282)
T PRK12875        184 FSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAA  222 (282)
T ss_pred             HHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHH
Confidence            79999999999764 44554   4445555555544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	375
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 57/354 (16%), Positives = 98/354 (27%), Gaps = 93/354 (26%)

Query: 64  SKQRNFIWASSQIGAAGSDPLLNKVSAFRDACWRFLRPH---TIRGTALGS-----VALV 115
            +QR+ ++  +Q+ A  +   L      R A    LRP     I G   GS        V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVL-GSGKTWVALDV 170

Query: 116 ARA---LIENPNLIKW---------SLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN 163
             +     +    I W           +L+    LL  I  N         +    D  +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---------WTSRSDHSS 221

Query: 164 KPYLPIAAGDLSVQSAWFLVIFFA----VTGLLIV----------AFNFGPFITSLYCLG 209
              L I     S+Q+   L            LL++          AFN         C  
Sbjct: 222 NIKLRIH----SIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-------CKI 268

Query: 210 LFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY-YATRAALGLSFEW------NA 262
           L   T       R K   V  FL  AT     L+             L  ++      + 
Sbjct: 269 LLT-T-------RFK--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 263 PVAFITAFVTLFALVIAVTKDLPDV-EGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 321
           P   +T      +++    +D     +  +      L T +    +  L        +  
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDR 377

Query: 322 -AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 374
            ++         F  +  IP  ++    L+   W     +   V++       +
Sbjct: 378 LSV---------FPPSAHIPTILL---SLI---WFDVIKSDVMVVVNKLHKYSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00