Citrus Sinensis ID: 017421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNHRCARKY
Secondary Structure (PSIPRED)
ccEEccccccccccccccccEEEccccccccccccccccccccccccccccHHEEEccccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEcccccEEEEEccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccEEccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEccccccEEEEcccccEEEEccccccccccccEEEEEEcccccEEEEEEccccccccccEEcEEcccccEEEEEEEEEEEEEEEEcccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccHcccEEEHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHccccccccccccccHHHHHHHHHccccccccccccccEEEEccccccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEccHccccccccEEEEEcccccEEEEEEEEEEEccccccccccccccccHEEEEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mfvtasgvdfdemgyAMSRFEIEsefydaadtvnqasnsrskfkkplsALDHEIAQLTklksepkehfskevpgkrhlpvSTVKMLagregnysgrgrfsaADCCHMLsrylpvngpwpvdqttsrAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRwtvtdtslspdqrhlvyasmspIVHIVDVGSGTMESLANVTeihdgldfsaaddggysfGIFSLKfstdgrelvagssddciYVYDLEANKLSLRILAHtsdvntvcfgdesghliysgsddnlckvNSVLLLtrsinpcnkylfnpcnKYLIIYLILVISIyspnilldnYFLLRTFYSFMVHILFSgylhndhnhrcarky
Flexible Loop (DISEMBL)
mfvtasgvdfdemgYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQltklksepkehfskevpgkrhlpvstVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGylhndhnhrcarky
Low Complexity Region (SEG)
MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKyliiylilvisiysPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNHRCARKY
Disordered region (IsUnstruct)
*********FDEMGYAMSRFEIESEFY**********************************************************LA***GNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDH********
Disordered Region (DISOPRED)
*******VDFDEMGYAMSRFEI*******************************IAQLTKLKSE****************VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNHRCARKY
Disordered Region (DISEMBL)
MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNHRCARKY
Disordered Region (DISPRO)
*FVTASGVDFDEMGYAMSRFEIES*******************KKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNHRCARK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNHRCARKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q40153	473	LEC14B protein OS=Lithosp	N/A	no	0.760	0.598	0.669	1e-108
O24467	475	LEC14B homolog OS=Prunus	N/A	no	0.744	0.583	0.670	1e-104
Q8TEB1	546	DDB1- and CUL4-associated	yes	no	0.537	0.366	0.353	4e-31
Q5R7H5	546	DDB1- and CUL4-associated	yes	no	0.537	0.366	0.353	4e-31
Q91VU6	549	DDB1- and CUL4-associated	yes	no	0.553	0.375	0.348	1e-30
Q5E9I8	546	DDB1- and CUL4-associated	yes	no	0.548	0.373	0.347	2e-30
Q5M9G8	549	DDB1- and CUL4-associated	yes	no	0.537	0.364	0.348	3e-30
P90794	571	DDB1- and CUL4-associated	yes	no	0.491	0.320	0.292	6e-13
A8XEN7	554	DDB1- and CUL4-associated	N/A	no	0.516	0.346	0.275	3e-12
P49695	742	Probable serine/threonine	yes	no	0.408	0.204	0.306	1e-10

>sp|Q40153|LE14B_LITER LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/284 (66%), Positives = 232/284 (81%), Gaps = 1/284 (0%)

Query: 13  MGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEV 72
           MGYAMSRFE +     ++ + +  ++  S   KP+  LDHEIAQLT+L+S P E+ S+++
Sbjct: 1   MGYAMSRFETDVSVIFSS-SSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDL 59

Query: 73  PGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF 132
             KR LP+ST+KMLAGRE N SGRGRFS+ADCCH++SR+LPVN P  VDQ TSR Y+SQF
Sbjct: 60  LVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTSRVYLSQF 119

Query: 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192
           S DGSLF+AGFQ   IRIY+V++GWK+Q DI+AK +RWT+TD SLSPDQ+ L YAS++PI
Sbjct: 120 STDGSLFIAGFQGCHIRIYNVDKGWKVQNDIIAKCVRWTITDASLSPDQKFLAYASLTPI 179

Query: 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252
            HIV  GS   ES ANVT+IHDGLDFS+ DDGGYSFG+FS+KFSTDGRE+VAG+SD+ I 
Sbjct: 180 AHIVKFGSAATESHANVTDIHDGLDFSSNDDGGYSFGVFSIKFSTDGREIVAGTSDESIC 239

Query: 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           VYDLEA++LSLRI AH SDVN+VCF DESGHLIYSGSDDNLCKV
Sbjct: 240 VYDLEADRLSLRISAHESDVNSVCFADESGHLIYSGSDDNLCKV 283

Lithospermum erythrorhizon (taxid: 34254)

>sp|O24467|LE14B_PRUAR LEC14B homolog OS=Prunus armeniaca PE=2 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/279 (67%), Positives = 225/279 (80%), Gaps = 2/279 (0%)

Query: 18  SRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRH 77
           +RF  ++   D+ + V  + +S+    +  +  DHEIAQLTK +S P +  S+++PGK  
Sbjct: 5   TRFGKDNSACDSGNAVEGSGSSKGP-NEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSR 63

Query: 78  LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 137
           L VST+KML GRE N+SGRGRFS+AD CH+LSRYLP+NGPW VDQ+TS AYVSQFS DG 
Sbjct: 64  LLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTSPAYVSQFSNDGL 123

Query: 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197
            FVAGFQ   IRIY+V++GWK+QKDIL KSLRWT+TDTSLSPDQR+LVYASM+PIV+IV+
Sbjct: 124 FFVAGFQGGHIRIYNVDKGWKVQKDILTKSLRWTITDTSLSPDQRYLVYASMTPIVNIVN 183

Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
           VGS   ESLANVTEIH+GLDFS   D    FGIFS++FSTDGRELVA S D  IYVYDL+
Sbjct: 184 VGSSMTESLANVTEIHEGLDFSVGGDED-EFGIFSVRFSTDGRELVAASRDASIYVYDLQ 242

Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ANK++LRI AH+SDVNTVCF DE+GHLIYSGSDDNLCKV
Sbjct: 243 ANKVNLRIPAHSSDVNTVCFADETGHLIYSGSDDNLCKV 281

Prunus armeniaca (taxid: 36596)

>sp|Q8TEB1|DCA11_HUMAN DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1

 Score =  135 bits (341), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 120/215 (55%), Gaps = 15/215 (6%)

Query: 84  KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
           +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
           Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251

Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
                    + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query: 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct: 300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R7H5|DCA11_PONAB DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 120/215 (55%), Gaps = 15/215 (6%)

Query: 84  KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
           +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
           Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG 251

Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
                    + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query: 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct: 300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q91VU6|DCA11_MOUSE DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 15/221 (6%)

Query: 78  LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 137
           L  S  +ML  RE     RG FS  +   ++S +LP +  +  D  + +A+   +S DG 
Sbjct: 127 LQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHFLPNDLSF-TDTYSQKAFCGIYSKDGQ 185

Query: 138 LFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196
           +F++  Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI 
Sbjct: 186 IFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHIC 245

Query: 197 DV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255
           ++ G G         + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D
Sbjct: 246 NIYGEG---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFD 293

Query: 256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            E N+ +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct: 294 REQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q5E9I8|DCA11_BOVIN DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 15/219 (6%)

Query: 80  VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 139
           +S  +ML  RE     +G FS  +   ++S +LP N     D  + +A+   +S DG +F
Sbjct: 129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187

Query: 140 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
           ++  Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++
Sbjct: 188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247

Query: 199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
            G G         + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E
Sbjct: 248 YGEG---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295

Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            N+ +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct: 296 QNRRTLQIESHEDDVNAVAFADVSSQILFSGGDDAICKV 334

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Bos taurus (taxid: 9913)

>sp|Q5M9G8|DCA11_RAT DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 119/215 (55%), Gaps = 15/215 (6%)

Query: 84  KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
           +ML  RE     RG FS  +   ++S +LP +  +  D  + +A+   +S DG +F++  
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVMSHFLPNDLSF-TDTYSQKAFCGIYSKDGQIFMSAC 191

Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
           Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI  + G G
Sbjct: 192 QDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICSIYGEG 251

Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
                    + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query: 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct: 300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 15/198 (7%)

Query: 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY--DVERGWKIQKDIL 164
           +L+ +LP N    VD+  ++++ +Q+  +G+  V   Q  +IR Y  + ++     K + 
Sbjct: 148 VLNSHLP-NQKRRVDRVATKSFCTQYIQNGTKIVVASQDEKIRFYQRNPDKSKYRSKYMK 206

Query: 165 AKSLR-----WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219
           +  LR     W++ DT++S +   + Y +    V    VG        N+T     L+  
Sbjct: 207 SDELRVDQCGWSILDTAISLNGDLIAYGTWKDAVF---VGKLDFTERQNITWFPIDLN-- 261

Query: 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG 278
             + G     +F +KFS    ++V G+S   I+V+D+E  +    I+ AH  DVN+VCF 
Sbjct: 262 -GEPGRDHCAVFCVKFSDSSEQIVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVNSVCFA 320

Query: 279 DESGHLIYSGSDDNLCKV 296
           D   +LIYS  DD L KV
Sbjct: 321 DLGSNLIYSAGDDGLVKV 338

Involved in regulation of lifespan.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XEN7|DCA11_CAEBR DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 15/207 (7%)

Query: 99  FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK 158
            ++A   H+L+ +LP N    VDQ  ++ + +Q+  +G   V   Q  +   +   +  K
Sbjct: 117 MTSASRAHLLNTHLP-NKKRRVDQLRTKNFCAQYIQNGRKMVVSSQGERENSFLSTKSGK 175

Query: 159 IQKDILAKSLRWTVT--------DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210
           I+  +   S++ T          DT+++     + Y +    V+I     G ME   N  
Sbjct: 176 IEISLPILSMQRTPCGPLQLVDLDTAVNQQGDLISYCTWKDAVYI-----GRMEQEDNQN 230

Query: 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHT 269
                +D+           +F ++FS D  ++V G+S+  I+V+D+E  +    I+ AH 
Sbjct: 231 ITWFPIDWHGEHAVQNQCAVFCVRFSDDSEQIVCGTSEYSIHVFDVEQRRRIRTIVNAHE 290

Query: 270 SDVNTVCFGDESGHLIYSGSDDNLCKV 296
            DVN+VCF D   +LIYS  DD L KV
Sbjct: 291 DDVNSVCFADYGSNLIYSAGDDGLVKV 317

Involved in regulation of lifespan.

Caenorhabditis briggsae (taxid: 6238)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
           T   Y   FS DGS+  +G +   IR++DV  G   ++D+L       V   + SPD   
Sbjct: 585 TDYVYAVAFSPDGSMVASGSRDGTIRLWDVATG--KERDVLQAPAE-NVVSLAFSPDGSM 641

Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
           LV+ S S  VH+ DV SG  E+L                  G++  + ++ FS DG  L 
Sbjct: 642 LVHGSDS-TVHLWDVASG--EALHTFE--------------GHTDWVRAVAFSPDGALLA 684

Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           +GS D  I ++D+ A +    +  HT  V++V F  E G  + S S+D   ++
Sbjct: 685 SGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPE-GTTLASASEDGTIRI 736

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
225436851	486	PREDICTED: LEC14B homolog [Vitis vinifer	0.793	0.606	0.797	1e-133
297809835	493	transducin family protein [Arabidopsis l	0.795	0.600	0.751	1e-126
22328262	493	transducin/WD40 domain-containing protei	0.795	0.600	0.755	1e-126
3924603	555	putative WD-repeat protein [Arabidopsis	0.774	0.518	0.765	1e-125
224128636	488	predicted protein [Populus trichocarpa]	0.790	0.602	0.760	1e-124
358248886	493	uncharacterized protein LOC100815163 [Gl	0.793	0.598	0.733	1e-123
357442645	321	LEC14B protein, partial [Medicago trunca	0.793	0.919	0.709	1e-120
357442621	495	LEC14B protein [Medicago truncatula] gi|	0.793	0.595	0.709	1e-119
449491526	488	PREDICTED: LOW QUALITY PROTEIN: LEC14B h	0.790	0.602	0.712	1e-116
449462296	488	PREDICTED: LEC14B homolog [Cucumis sativ	0.790	0.602	0.712	1e-116

>gi|225436851|ref|XP_002271734.1| PREDICTED: LEC14B homolog [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/296 (79%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
           M+ TAS    +EMGYAMSR E++S+F DA   ++   N+  +  K L+ LDHEI+QLTKL
Sbjct: 1   MYFTASEGAANEMGYAMSRLELDSDFCDAGKDIHGNDNTE-RLNKELNHLDHEISQLTKL 59

Query: 61  KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
           +S P E  S+ +PGKR  PVSTVKMLAGREGNYSGRGRFS+ADCCHMLSRYLPVNGPW V
Sbjct: 60  RSGPHECLSQIIPGKRDSPVSTVKMLAGREGNYSGRGRFSSADCCHMLSRYLPVNGPWLV 119

Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
           DQ TSRAYVSQFSADGSLFVAGFQ S IRIY+V+RGWK+QK+ILAKSLRWTVTDTSLSPD
Sbjct: 120 DQMTSRAYVSQFSADGSLFVAGFQGSHIRIYNVDRGWKVQKNILAKSLRWTVTDTSLSPD 179

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           QRHLVYASMSPIVHIV++GS   ESLAN+TEIHDGLDFSAADD GYSFGIFS+KFSTDGR
Sbjct: 180 QRHLVYASMSPIVHIVNIGSAATESLANITEIHDGLDFSAADDEGYSFGIFSVKFSTDGR 239

Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ELVAGSSDD IYVYDLEANKLSLRILAHTSDVNTVCF DESGHLIYSGSDD+LCKV
Sbjct: 240 ELVAGSSDDSIYVYDLEANKLSLRILAHTSDVNTVCFADESGHLIYSGSDDSLCKV 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809835|ref|XP_002872801.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318638|gb|EFH49060.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/298 (75%), Positives = 255/298 (85%), Gaps = 2/298 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFK--KPLSALDHEIAQLT 58
           MF   S +D DEMGYAMSR EIES+  D         +S +  +  + L+ LDHEI+Q+T
Sbjct: 1   MFFGPSEIDTDEMGYAMSRLEIESDLCDTGKDFCGVGSSSASHRSSEHLADLDHEISQVT 60

Query: 59  KLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPW 118
           KLKS P + +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP+ GPW
Sbjct: 61  KLKSSPHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPIKGPW 120

Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
            VDQ  SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLS
Sbjct: 121 LVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLS 180

Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
           PDQR+LVYASMSPIVHIVDVGSGT ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTD
Sbjct: 181 PDQRNLVYASMSPIVHIVDVGSGTTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240

Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           GR++VAGSSDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKV
Sbjct: 241 GRDIVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKV 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328262|ref|NP_192211.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|334186335|ref|NP_001190666.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|20466538|gb|AAM20586.1| putative WD-repeat protein [Arabidopsis thaliana] gi|23198298|gb|AAN15676.1| putative WD-repeat protein [Arabidopsis thaliana] gi|332656861|gb|AEE82261.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332656862|gb|AEE82262.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/298 (75%), Positives = 254/298 (85%), Gaps = 2/298 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTV--NQASNSRSKFKKPLSALDHEIAQLT 58
           MF   S  D DEMGYAMSR EIES+  D    V    +S+   +  + L+ LDHEI+Q+T
Sbjct: 1   MFFGPSEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVT 60

Query: 59  KLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPW 118
           KLKS P + +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP  GPW
Sbjct: 61  KLKSSPHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPW 120

Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
            VDQ  SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLS
Sbjct: 121 LVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLS 180

Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
           PDQR+LVYASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTD
Sbjct: 181 PDQRNLVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240

Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           GRE+VAGSSDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKV
Sbjct: 241 GREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3924603|gb|AAC79104.1| putative WD-repeat protein [Arabidopsis thaliana] gi|7269787|emb|CAB77787.1| putative WD-repeat protein [Arabidopsis thaliana]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/290 (76%), Positives = 251/290 (86%), Gaps = 2/290 (0%)

Query: 9   DFDEMGYAMSRFEIESEFYDAADTV--NQASNSRSKFKKPLSALDHEIAQLTKLKSEPKE 66
           D DEMGYAMSR EIES+  D    V    +S+   +  + L+ LDHEI+Q+TKLKS P +
Sbjct: 71  DADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSSPHQ 130

Query: 67  HFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSR 126
            +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP  GPW VDQ  SR
Sbjct: 131 RYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSR 190

Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
           AYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLSPDQR+LVY
Sbjct: 191 AYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRNLVY 250

Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
           ASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+VAGS
Sbjct: 251 ASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGS 310

Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           SDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKV
Sbjct: 311 SDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKV 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128636|ref|XP_002320381.1| predicted protein [Populus trichocarpa] gi|222861154|gb|EEE98696.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/296 (76%), Positives = 246/296 (83%), Gaps = 2/296 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
           M+  A     DEMGYAMSR E ESE  D   T+ +A +S+ +    L+ LDHEIAQ+TKL
Sbjct: 1   MYFFARRTSVDEMGYAMSRLETESELCDGGKTIPEAGSSK-RASNWLNNLDHEIAQVTKL 59

Query: 61  KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
           KS P +  ++ VPG     VSTVKML GRE NYS RGRFSAAD CHMLSRYLPVNGPW V
Sbjct: 60  KSSPHKQLAELVPGMHKSSVSTVKMLVGREANYSARGRFSAADRCHMLSRYLPVNGPWLV 119

Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
           DQ ++RAYVSQFSADGSLFVAGFQ S IRIY+VE+GWK+QK+ILAKSLRWTVTDTSLSPD
Sbjct: 120 DQMSTRAYVSQFSADGSLFVAGFQGSYIRIYNVEKGWKVQKNILAKSLRWTVTDTSLSPD 179

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           QRHLVYASMSPIVHIVD GS   ESLANVTE HDGLDFS+  DGGYSFGIFS+KFSTDGR
Sbjct: 180 QRHLVYASMSPIVHIVDAGSAETESLANVTEFHDGLDFSSG-DGGYSFGIFSVKFSTDGR 238

Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ELVAGS+DD IYVYDLE NKLSLRILAHTSDVNTVCF DESGHLI+SGSDDNLCKV
Sbjct: 239 ELVAGSNDDSIYVYDLEQNKLSLRILAHTSDVNTVCFADESGHLIFSGSDDNLCKV 294

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248886|ref|NP_001239957.1| uncharacterized protein LOC100815163 [Glycine max] gi|255636711|gb|ACU18691.1| unknown [Glycine max]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/296 (73%), Positives = 248/296 (83%), Gaps = 1/296 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
           M+ TAS +  DEMGYAMSR EIES   +  D + + S+S  + K+PL  LD+EIAQ+TKL
Sbjct: 1   MYATASALYIDEMGYAMSRLEIESGLSEDGDAIQEDSSS-GETKRPLKNLDNEIAQITKL 59

Query: 61  KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
           KS P +   +   G+  LPVS VKMLAGRE NYSGRGRFS+AD CH+LSRYLPVNGPW +
Sbjct: 60  KSTPHQQLVQVGTGRPELPVSPVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLI 119

Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
           DQ +SRAYVSQFSADGSLF+AGFQ S IRIY+V+RGWK+QK+ILAK+LRWT+TDTSLSPD
Sbjct: 120 DQMSSRAYVSQFSADGSLFIAGFQGSHIRIYNVDRGWKVQKNILAKNLRWTITDTSLSPD 179

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           QR+LVYASMSPIVHIV+ GS   ESLANVTEIHDGLDFS+ DDGGYSFGIF +KFS DG+
Sbjct: 180 QRYLVYASMSPIVHIVNAGSAETESLANVTEIHDGLDFSSNDDGGYSFGIFCVKFSKDGK 239

Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ELVAGSS D IYVYDLEANKLSLRILAHT DVNTVCF DE+ HLIYSGSDD+ CKV
Sbjct: 240 ELVAGSSGDSIYVYDLEANKLSLRILAHTCDVNTVCFADETSHLIYSGSDDSFCKV 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442645|ref|XP_003591600.1| LEC14B protein, partial [Medicago truncatula] gi|355480648|gb|AES61851.1| LEC14B protein, partial [Medicago truncatula]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/296 (70%), Positives = 245/296 (82%), Gaps = 1/296 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
           M+  +  +  D+MGYAMSR +++S   +  + + + S S  K KK    LD+EIAQ+TKL
Sbjct: 1   MYAISGALYVDQMGYAMSRLDVDSSDTEDGNAILEDS-STGKAKKAFENLDNEIAQITKL 59

Query: 61  KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
           KS P +    +  G++ LPVS VKMLAGRE N SGRGRFS+AD CH+LSRYLPVNGPWP+
Sbjct: 60  KSTPHQLLVHDGSGRKELPVSPVKMLAGRESNCSGRGRFSSADRCHLLSRYLPVNGPWPI 119

Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
           DQ  SRAYVSQFSADGSLFVAGFQ + I+IY+VE+GWK+QK+IL KSLRWT+TDTSLSPD
Sbjct: 120 DQMPSRAYVSQFSADGSLFVAGFQGNHIKIYNVEKGWKVQKNILTKSLRWTITDTSLSPD 179

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           Q HLVYASMSPIVHIV+VGS   ESLANVTEIHDGLDFS+ DDGGYSFGIFSLKFSTDG+
Sbjct: 180 QSHLVYASMSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSLKFSTDGK 239

Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ELVAG+S D IYVYDLE NK+SLRILAHT+DVNTVCF DE+GHLIYSGSDD+ CKV
Sbjct: 240 ELVAGTSGDSIYVYDLETNKVSLRILAHTADVNTVCFADETGHLIYSGSDDSFCKV 295

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442621|ref|XP_003591588.1| LEC14B protein [Medicago truncatula] gi|355480636|gb|AES61839.1| LEC14B protein [Medicago truncatula]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/296 (70%), Positives = 245/296 (82%), Gaps = 1/296 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
           M+  +  +  D+MGYAMSR +++S   +  + + + S S  K KK    LD+EIAQ+TKL
Sbjct: 1   MYAISGALYVDQMGYAMSRLDVDSSDTEDGNAILEDS-STGKAKKAFENLDNEIAQITKL 59

Query: 61  KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
           KS P +    +  G++ LPVS VKMLAGRE N SGRGRFS+AD CH+LSRYLPVNGPWP+
Sbjct: 60  KSTPHQLLVHDGSGRKELPVSPVKMLAGRESNCSGRGRFSSADRCHLLSRYLPVNGPWPI 119

Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
           DQ  SRAYVSQFSADGSLFVAGFQ + I+IY+VE+GWK+QK+IL KSLRWT+TDTSLSPD
Sbjct: 120 DQMPSRAYVSQFSADGSLFVAGFQGNHIKIYNVEKGWKVQKNILTKSLRWTITDTSLSPD 179

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           Q HLVYASMSPIVHIV+VGS   ESLANVTEIHDGLDFS+ DDGGYSFGIFSLKFSTDG+
Sbjct: 180 QSHLVYASMSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSLKFSTDGK 239

Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ELVAG+S D IYVYDLE NK+SLRILAHT+DVNTVCF DE+GHLIYSGSDD+ CKV
Sbjct: 240 ELVAGTSGDSIYVYDLETNKVSLRILAHTADVNTVCFADETGHLIYSGSDDSFCKV 295

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491526|ref|XP_004158926.1| PREDICTED: LOW QUALITY PROTEIN: LEC14B homolog [Cucumis sativus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/296 (71%), Positives = 237/296 (80%), Gaps = 2/296 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
           M+   S     +MGYA+SR EI S+     D    AS       KPL+ LD EIAQLT++
Sbjct: 1   MYGIPSWAIIGDMGYALSRLEIGSDC--DGDMSTSASGEAQVSNKPLNNLDDEIAQLTRM 58

Query: 61  KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
           KS P  H S+ +PGK  + +S VKMLAGRE NYSG+GRFSA DCCH+LSRYLPVNGPW V
Sbjct: 59  KSGPSAHLSQVLPGKPEVYISPVKMLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLV 118

Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
           DQ TSRAYVSQFS+DGSLFVAGFQ S IRIY+V+ GWK+QK+ILAKSLRWT+TDTSLSPD
Sbjct: 119 DQMTSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPD 178

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           QR+LVYASMSPI+HIV+V S   ESLANVTEIH+GLDF A  DG  SFGIFS+KFSTDGR
Sbjct: 179 QRYLVYASMSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGR 238

Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ELVAGSSDD IYVYDLE NKLSLRILAH SDVNTVCF DE+GHL+YSGSDD  CKV
Sbjct: 239 ELVAGSSDDSIYVYDLETNKLSLRILAHRSDVNTVCFADETGHLVYSGSDDTFCKV 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462296|ref|XP_004148877.1| PREDICTED: LEC14B homolog [Cucumis sativus]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/296 (71%), Positives = 237/296 (80%), Gaps = 2/296 (0%)

Query: 1   MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
           M+   S     +MGYA+SR EI S+     D    AS       KPL+ LD EIAQLT++
Sbjct: 1   MYGIPSWAIIGDMGYALSRLEIGSDC--DGDMSTSASGEAQVSNKPLNNLDDEIAQLTRM 58

Query: 61  KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
           KS P  H S+ +PGK  + +S VKMLAGRE NYSG+GRFSA DCCH+LSRYLPVNGPW V
Sbjct: 59  KSGPSAHLSQVLPGKPEVYISPVKMLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLV 118

Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
           DQ TSRAYVSQFS+DGSLFVAGFQ S IRIY+V+ GWK+QK+ILAKSLRWT+TDTSLSPD
Sbjct: 119 DQMTSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPD 178

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           QR+LVYASMSPI+HIV+V S   ESLANVTEIH+GLDF A  DG  SFGIFS+KFSTDGR
Sbjct: 179 QRYLVYASMSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGR 238

Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           ELVAGSSDD IYVYDLE NKLSLRILAH SDVNTVCF DE+GHL+YSGSDD  CKV
Sbjct: 239 ELVAGSSDDSIYVYDLETNKLSLRILAHRSDVNTVCFADETGHLVYSGSDDTFCKV 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2139335	493	AT4G03020 "AT4G03020" [Arabido	0.795	0.600	0.761	9.8e-119
ZFIN|ZDB-GENE-050809-116	541	dcaf11 "ddb1 and cul4 associat	0.548	0.377	0.364	1.1e-32
UNIPROTKB|Q8TEB1	546	DCAF11 "DDB1- and CUL4-associa	0.537	0.366	0.358	1.7e-31
UNIPROTKB|F1SGL8	546	DCAF11 "Uncharacterized protei	0.537	0.366	0.353	2.2e-31
UNIPROTKB|Q5R7H5	546	DCAF11 "DDB1- and CUL4-associa	0.537	0.366	0.358	2.2e-31
UNIPROTKB|F1MVT2	546	DCAF11 "DDB1- and CUL4-associa	0.548	0.373	0.351	4.8e-31
UNIPROTKB|Q5E9I8	546	DCAF11 "DDB1- and CUL4-associa	0.548	0.373	0.351	4.8e-31
RGD|1311288	549	Dcaf11 "DDB1 and CUL4 associat	0.725	0.491	0.302	4.9e-31
MGI|MGI:90168	549	Dcaf11 "DDB1 and CUL4 associat	0.553	0.375	0.357	6.4e-31
ASPGD|ASPL0000074293	660	AN4800 [Emericella nidulans (t	0.459	0.259	0.389	2.1e-27

TAIR|locus:2139335 AT4G03020 "AT4G03020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 227/298 (76%), Positives = 255/298 (85%)

Query:     1 MFVTASGVDFDEMGYAMSRFEIESEFYDAA-DTVNQASNSRS-KFKKPLSALDHEIAQLT 58
             MF   S  D DEMGYAMSR EIES+  D   D     S+S S +  + L+ LDHEI+Q+T
Sbjct:     1 MFFGPSEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVT 60

Query:    59 KLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPW 118
             KLKS P + +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP  GPW
Sbjct:    61 KLKSSPHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPW 120

Query:   119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
              VDQ  SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLS
Sbjct:   121 LVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLS 180

Query:   179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
             PDQR+LVYASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTD
Sbjct:   181 PDQRNLVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240

Query:   239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
             GRE+VAGSSDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKV
Sbjct:   241 GREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKV 298

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-050809-116 dcaf11 "ddb1 and cul4 associated factor 11" [Danio rerio (taxid:7955)]

 Score = 359 (131.4 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 79/217 (36%), Positives = 121/217 (55%)

Query:    81 STVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV 140
             S   MLA RE        FS  +C  + S +LP +  +  D    + +   +S +G++F+
Sbjct:   134 SFTHMLAEREQGRCRGSSFSHGECSRIRSHFLPNHVVYK-DTYQQKVFCGVYSDEGNMFL 192

Query:   141 AGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199
             +  Q   IR+YD  RG + ++K + A+ + W++ D   +PD R ++Y+S S  +H+  V 
Sbjct:   193 SACQDQNIRLYDTSRGRFTLKKTVKARDVGWSILDVCFTPDARCVLYSSWSDYIHVCSVD 252

Query:   200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259
                        E H  LD +  D+    F +FSL  STDG+E++ G++D C+YV+D E N
Sbjct:   253 GDN--------ETHTALDLNP-DER--RFCVFSLAASTDGKEILGGANDGCLYVFDREQN 301

Query:   260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
             K +L+I AH  DVN V F D S  L++SGSDD LCKV
Sbjct:   302 KRTLKIDAHEDDVNAVAFADSSSQLLFSGSDDALCKV 338

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q8TEB1 DCAF11 "DDB1- and CUL4-associated factor 11" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 1.7e-31, P = 1.7e-31
 Identities = 77/215 (35%), Positives = 121/215 (56%)

Query:    84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
             +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct:   133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query:   144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
             Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct:   192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251

Query:   202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
                      + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct:   252 ---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query:   262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
             +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct:   300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SGL8 DCAF11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 348 (127.6 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 76/215 (35%), Positives = 120/215 (55%)

Query:    84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
             +ML  RE     RG FS  +   ++S +LP N    +D  + +A+   +S DG +F++  
Sbjct:   133 QMLLQRERGLCHRGSFSLGEQSRVMSHFLP-NDLGFIDTYSQKAFCGIYSKDGQIFMSAC 191

Query:   144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
             Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct:   192 QDQVIRMYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251

Query:   202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
                      + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct:   252 ---------DTHTALDLRPVER---RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query:   262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
             +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct:   300 TLQIESHEDDVNAVAFADMSSQILFSGGDDAICKV 334

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q5R7H5 DCAF11 "DDB1- and CUL4-associated factor 11" [Pongo abelii (taxid:9601)]

 Score = 348 (127.6 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 77/215 (35%), Positives = 121/215 (56%)

Query:    84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
             +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct:   133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query:   144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
             Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct:   192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG 251

Query:   202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
                      + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct:   252 ---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query:   262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
             +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct:   300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F1MVT2 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 4.8e-31, P = 4.8e-31
 Identities = 77/219 (35%), Positives = 123/219 (56%)

Query:    80 VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 139
             +S  +ML  RE     +G FS  +   ++S +LP N     D  + +A+   +S DG +F
Sbjct:   129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187

Query:   140 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
             ++  Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++
Sbjct:   188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247

Query:   199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
              G G         + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E
Sbjct:   248 YGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295

Query:   258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
              N+ +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct:   296 QNRRTLQIESHEDDVNAVAFADVSSQILFSGGDDAICKV 334

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q5E9I8 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 4.8e-31, P = 4.8e-31
 Identities = 77/219 (35%), Positives = 123/219 (56%)

Query:    80 VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 139
             +S  +ML  RE     +G FS  +   ++S +LP N     D  + +A+   +S DG +F
Sbjct:   129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187

Query:   140 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
             ++  Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++
Sbjct:   188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247

Query:   199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
              G G         + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E
Sbjct:   248 YGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295

Query:   258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
              N+ +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct:   296 QNRRTLQIESHEDDVNAVAFADVSSQILFSGGDDAICKV 334

GO:0016567 "protein ubiquitination" evidence=IEA

RGD|1311288 Dcaf11 "DDB1 and CUL4 associated factor 11" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 4.9e-31, P = 4.9e-31
 Identities = 87/288 (30%), Positives = 146/288 (50%)

Query:    14 GYAMSRFEIESEFYDAADTVNQASNSR--SKFKKPLSAL-DHEIAQLTKLKSEPKEHFSK 70
             G   +  ++     D+ +  + A + R   ++  P+ A  D    +  ++K+  +    +
Sbjct:    60 GGGAANLQLIQALSDSEEEHDSAWDGRLGDRYNPPVDATPDTRELEYNEIKTRVELATGR 119

Query:    71 EVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS 130
                G+     S  +ML  RE     RG FS  +   ++S +LP N     D  + +A+  
Sbjct:   120 LGLGRTAQEHSFPRMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCG 178

Query:   131 QFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189
              +S DG +F++  Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S 
Sbjct:   179 IYSKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSW 238

Query:   190 SPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248
             S  +HI  + G G         + H  LD    D+    F +FS+  S+DGRE++ G++D
Sbjct:   239 SDYIHICSIYGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGAND 286

Query:   249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
              C+YV+D E N+ +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct:   287 GCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO;ISS

MGI|MGI:90168 Dcaf11 "DDB1 and CUL4 associated factor 11" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 6.4e-31, P = 6.4e-31
 Identities = 79/221 (35%), Positives = 122/221 (55%)

Query:    78 LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 137
             L  S  +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG 
Sbjct:   127 LQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQ 185

Query:   138 LFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196
             +F++  Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI 
Sbjct:   186 IFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHIC 245

Query:   197 DV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255
             ++ G G         + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D
Sbjct:   246 NIYGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFD 293

Query:   256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
              E N+ +L+I +H  DVN V F D S  +++SG DD +CKV
Sbjct:   294 REQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKV 334

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

ASPGD|ASPL0000074293 AN4800 [Emericella nidulans (taxid:162425)]

 Score = 315 (115.9 bits), Expect = 2.1e-27, P = 2.1e-27
 Identities = 69/177 (38%), Positives = 99/177 (55%)

Query:   125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQR 182
             ++ Y  QFS DG+ F +  Q  ++R+YD      WK  K +      WT+TD +LSPD R
Sbjct:   230 AKCYSGQFSDDGNFFFSCAQDFKVRMYDTSNPYEWKYYKTVDYPLASWTITDATLSPDNR 289

Query:   183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFSTDGR 240
              L Y+S+  +V +         S   + ++        A D  G   F ++S++FS DGR
Sbjct:   290 FLAYSSLRQLVCLAPTDPAD-SSDPIILDLASSAQRRVARDIFGRDGFAVWSVRFSGDGR 348

Query:   241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKV 296
             E+VAG+ D  + VYDLE  +  LRI  H  DVN VCFGD+S  H++YSGSDD+  +V
Sbjct:   349 EIVAGTGDHSVIVYDLETRQSVLRIRNHEDDVNAVCFGDKSSPHILYSGSDDSTVRV 405

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.004
PRK05137	435	PRK05137, tolB, translocation protein TolB; Provis	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
           FS DG +  +  +   I+++DVE G K    +   +  W V   + SPD   +  +S   
Sbjct: 101 FSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHT-DW-VNSVAFSPDGTFVASSSQDG 157

Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
            + + D+ +G           H G              + S+ FS DG +L++ SSD  I
Sbjct: 158 TIKLWDLRTG---KCVATLTGHTG-------------EVNSVAFSPDGEKLLSSSSDGTI 201

Query: 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            ++DL   K    +  H + VN+V F    G+L+ SGS+D   +V
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAF-SPDGYLLASGSEDGTIRV 245

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 20/173 (11%)

Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
           T       FS DG L   G     I+++D+E G  ++           V D + S D  +
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG---PVRDVAASADGTY 65

Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
           L   S    + + D+ +G       V  +            G++  + S+ FS DGR L 
Sbjct: 66  LASGSSDKTIRLWDLETGEC-----VRTLT-----------GHTSYVSSVAFSPDGRILS 109

Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           + S D  I V+D+E  K    +  HT  VN+V F    G  + S S D   K+
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV-CFGDESGH 283
           G++ G+  + FS DG+ L  GS D  I V+DLE  +L   +  HT  V  V    D  G 
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GT 64

Query: 284 LIYSGSDDNLCKV 296
            + SGS D   ++
Sbjct: 65  YLASGSSDKTIRL 77

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 6e-07
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 14/178 (7%)

Query: 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179
           +           FS DG L ++G     I+++D++ G K+ K +              SP
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239
           D   ++ AS S    +      T   L    E H                + SL FS DG
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-------------SVTSLAFSPDG 167

Query: 240 RELVAGSSDDC-IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           + L +GSS D  I ++DL   K    +  HT  V+++ F  + G LI SGS D   ++
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 6e-07
 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 29/244 (11%)

Query: 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-Q 181
           +       FS DG  L         I+++D+  G  +            V+  + SPD  
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDGG 211

Query: 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241
             +   S    + + D+ +G  + L +    H     S+              FS DG  
Sbjct: 212 LLIASGSSDGTIRLWDLSTG--KLLRSTLSGHSDSVVSS--------------FSPDGSL 255

Query: 242 LVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLC------ 294
           L +GSSD  I ++DL ++   LR L+ H+S V +V F  +   L    SD  +       
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 295 -KVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH 353
            K+ S L L     P +   F+P    L+       +I   ++           +S ++ 
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375

Query: 354 ILFS 357
           + FS
Sbjct: 376 VSFS 379

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 4e-06
 Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 33/220 (15%)

Query: 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188
           VS FS DGSL  +G     IR++D+     + + +   S    V   + SPD + L   S
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS--VLSVAFSPDGKLLASGS 303

Query: 189 MSPIVHIVDVGSGTMESLANVTEI------------HDGLDFSAADDGGYSF-------- 228
               V + D+ +G + S   +                  L    +DDG            
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 229 --------GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280
                    + S+ FS DGR + +GS+D  + ++DL    L   +  HTS V ++ F   
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF-SP 422

Query: 281 SGHLIYSGSDDNLCKVNSV--LLLTRSINPCNKYLFNPCN 318
            G  + SGS DN  ++  +   L + S +P  K L +  +
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSS 462

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 21/125 (16%)

Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
           FS DG   ++      I+++D+  G  +    L       V   + SPD   L   S   
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLG--TLRGHENG-VNSVAFSPDGYLLASGSEDG 241

Query: 192 IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
            + + D+ +G  +++L+  T                   + SL +S DG+ L +GS+D  
Sbjct: 242 TIRVWDLRTGECVQTLSGHTN-----------------SVTSLAWSPDGKRLASGSADGT 284

Query: 251 IYVYD 255
           I ++D
Sbjct: 285 IRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 25/177 (14%)

Query: 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216
             +   +L       +T  + SPD   L+  S    + + D              + +G 
Sbjct: 54  PDLSSLLLRGHEDS-ITSIAFSPDGELLLSGSSDGTIKLWD--------------LDNGE 98

Query: 217 DFSAADDGGYSFGIFSLKF-STDGRELVAGSSDDC--IYVYDLE-ANKLSLRILAHTSDV 272
               + +G +   +  L   S DG  ++  SS     + ++DL    KL   +  H+  V
Sbjct: 99  KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV 158

Query: 273 NTVCFGDESGHLIYSGSDDNLCKV------NSVLLLTRSINPCNKYLFNPCNKYLII 323
            ++ F  +   L    S D   K+        +  L    +P +   F+P    LI 
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 57/220 (25%), Positives = 87/220 (39%), Gaps = 57/220 (25%)

Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDI------LA-----KSLRWTVTDTSLSPD 180
           F  DG  F       +I+I++ E   K  +DI      LA       + W       S  
Sbjct: 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWN------SYI 544

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD------GLDFSAAD---------DG- 224
           +  +  ++   +V + DV    +     VTE+ +       +D+S+AD         DG 
Sbjct: 545 KSQVASSNFEGVVQVWDVARSQL-----VTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599

Query: 225 --------GYSFGIFSLK-------FSTD-GRELVAGSSDDCIYVYDLEANKLSL-RILA 267
                   G S G    K       F ++ GR L  GS+D  +Y YDL   KL L  ++ 
Sbjct: 600 VKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659

Query: 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSIN 307
           H+  V+ V F D S   + S S DN  K+  + +    IN
Sbjct: 660 HSKTVSYVRFVDSS--TLVSSSTDNTLKLWDLSMSISGIN 697

Length = 793

>gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 27/87 (31%)

Query: 178 SPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
           SP+++ + Y S     P V+++D+ +G  E + N   +                  F+ +
Sbjct: 210 SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGM-----------------TFAPR 252

Query: 235 FSTDGRELV-----AGSSDDCIYVYDL 256
           FS DGR++V      G++D  IY  DL
Sbjct: 253 FSPDGRKVVMSLSQGGNTD--IYTMDL 277

Length = 435

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.87
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0646	476	consensus WD40 repeat protein [General function pr	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.78
KOG4328	498	consensus WD40 protein [Function unknown]	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG2048	691	consensus WD40 repeat protein [General function pr	99.74
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG1273	405	consensus WD40 repeat protein [General function pr	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.66
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.66
KOG4227	609	consensus WD40 repeat protein [General function pr	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.64
PRK04922	433	tolB translocation protein TolB; Provisional	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.61
COG2319	466	FOG: WD40 repeat [General function prediction only	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.59
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.59
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.58
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.55
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.55
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
KOG1963	792	consensus WD40 repeat protein [General function pr	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.52
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
PRK00178	430	tolB translocation protein TolB; Provisional	99.5
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.49
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.48
PRK01742	429	tolB translocation protein TolB; Provisional	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.46
KOG1310	758	consensus WD40 repeat protein [General function pr	99.46
KOG4227	609	consensus WD40 repeat protein [General function pr	99.44
PRK01029	428	tolB translocation protein TolB; Provisional	99.44
PRK03629	429	tolB translocation protein TolB; Provisional	99.43
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.43
KOG1334	559	consensus WD40 repeat protein [General function pr	99.43
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.39
KOG2315	566	consensus Predicted translation initiation factor	99.39
PRK05137	435	tolB translocation protein TolB; Provisional	99.39
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.37
PRK04922	433	tolB translocation protein TolB; Provisional	99.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.32
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.31
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.31
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.3
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.27
KOG2321	703	consensus WD40 repeat protein [General function pr	99.26
COG4946	668	Uncharacterized protein related to the periplasmic	99.25
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.25
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.2
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.2
PRK04043	419	tolB translocation protein TolB; Provisional	99.19
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.18
PRK00178	430	tolB translocation protein TolB; Provisional	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.14
KOG1334	559	consensus WD40 repeat protein [General function pr	99.13
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.12
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.12
KOG4547	541	consensus WD40 repeat-containing protein [General	99.1
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.1
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.05
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.02
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.95
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.94
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.92
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG2314	698	consensus Translation initiation factor 3, subunit	98.9
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.89
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.89
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.87
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.85
KOG2315	566	consensus Predicted translation initiation factor	98.82
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
PRK04043	419	tolB translocation protein TolB; Provisional	98.76
KOG2695	425	consensus WD40 repeat protein [General function pr	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.75
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.73
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.66
KOG2314	698	consensus Translation initiation factor 3, subunit	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.65
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.64
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.63
KOG2695	425	consensus WD40 repeat protein [General function pr	98.6
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.57
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.57
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.56
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.53
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.49
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.48
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.47
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.46
KOG3621	726	consensus WD40 repeat-containing protein [General	98.46
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.45
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.43
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.42
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.28
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.19
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.16
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.06
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.05
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.03
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.99
PRK02888	635	nitrous-oxide reductase; Validated	97.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.94
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.93
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.89
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.77
COG3391	381	Uncharacterized conserved protein [Function unknow	97.76
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.75
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.75
PRK02888	635	nitrous-oxide reductase; Validated	97.73
KOG3621	726	consensus WD40 repeat-containing protein [General	97.71
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.67
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.67
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.64
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.64
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.55
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.54
PRK13616	591	lipoprotein LpqB; Provisional	97.53
COG3391	381	Uncharacterized conserved protein [Function unknow	97.52
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.5
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.42
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.4
KOG2395	644	consensus Protein involved in vacuole import and d	97.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.3
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.3
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.27
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.27
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.21
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.2
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.18
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.15
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.13
KOG2444	238	consensus WD40 repeat protein [General function pr	97.06
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.98
KOG2395	644	consensus Protein involved in vacuole import and d	96.96
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.94
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.94
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.93
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.92
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.91
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.86
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.85
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.8
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.68
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.52
PHA02713	557	hypothetical protein; Provisional	96.45
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.4
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.36
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.34
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.32
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.25
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.07
KOG2444	238	consensus WD40 repeat protein [General function pr	96.0
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.98
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.78
PRK13616	591	lipoprotein LpqB; Provisional	95.78
PRK13684	334	Ycf48-like protein; Provisional	95.66
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.61
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.48
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.42
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.35
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.35
PHA03098	534	kelch-like protein; Provisional	95.31
PHA02713	557	hypothetical protein; Provisional	95.27
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.14
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.03
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.01
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.95
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.8
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.38
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.33
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.32
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.3
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.21
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.21
PHA02790	480	Kelch-like protein; Provisional	94.04
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.02
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.88
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.77
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.63
PRK10115	686	protease 2; Provisional	93.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.45
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.37
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.26
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.16
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.93
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	92.86
PRK10115	686	protease 2; Provisional	92.86
KOG2247	615	consensus WD40 repeat-containing protein [General	92.77
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.66
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.59
PRK13684	334	Ycf48-like protein; Provisional	92.56
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.07
PHA03098	534	kelch-like protein; Provisional	91.89
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.17
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.85
PHA02790	480	Kelch-like protein; Provisional	90.47
COG5167	776	VID27 Protein involved in vacuole import and degra	90.41
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.16
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.9
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.9
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.43
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.31
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.05
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.97
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.87
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.76
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.75
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.71
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.32
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.77
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.33
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.98
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.14
COG5167	776	VID27 Protein involved in vacuole import and degra	85.55
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.54
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	85.04
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.83
KOG2247	615	consensus WD40 repeat-containing protein [General	84.67
COG4590	733	ABC-type uncharacterized transport system, permeas	84.06
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	84.03
PLN02193	470	nitrile-specifier protein	83.41
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.28
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.14
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	82.57
PF12768	281	Rax2: Cortical protein marker for cell polarity	81.31
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.02
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	80.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.9

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-40  Score=282.60  Aligned_cols=228  Identities=19%  Similarity=0.239  Sum_probs=211.0

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+-+....+|.....+....|.+|...|.++.|+|.  +..+|+|+.||++++|++.+...+..   +.+|...|..++|
T Consensus       193 ~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~---l~gH~~RVs~Vaf  269 (459)
T KOG0272|consen  193 GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD---LEGHLARVSRVAF  269 (459)
T ss_pred             eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh---hhcchhhheeeee
Confidence            555567788998888888999999999999999996  56899999999999999998766655   7789899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      +|+|++|++++.|.+-++||+.++.......                ||...|.+++|+|||.++++|+.|..-+|||++
T Consensus       270 HPsG~~L~TasfD~tWRlWD~~tk~ElL~QE----------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR  333 (459)
T KOG0272|consen  270 HPSGKFLGTASFDSTWRLWDLETKSELLLQE----------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR  333 (459)
T ss_pred             cCCCceeeecccccchhhcccccchhhHhhc----------------ccccccceeEecCCCceeeccCccchhheeecc
Confidence            9999999999999999999999987654444                899999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEecc-CCCeEEEEeeeeEE
Q 017421          258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNP-CNKYLIIYLILVIS  330 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~  330 (372)
                      ++.++..+.+|..+|.+|+|+ |+|..||||+.|++++|||++      ++..|.+-|+.+.|+| .|.+|++++     
T Consensus       334 tgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-----  407 (459)
T KOG0272|consen  334 TGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-----  407 (459)
T ss_pred             cCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-----
Confidence            999999999999999999999 999999999999999999998      5668999999999999 688999888     


Q ss_pred             EeeceEEEeecccceEEEEEeee
Q 017421          331 IYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                       ||+++++|.-.++++++++.||
T Consensus       408 -yD~t~kiWs~~~~~~~ksLaGH  429 (459)
T KOG0272|consen  408 -YDNTVKIWSTRTWSPLKSLAGH  429 (459)
T ss_pred             -cCcceeeecCCCcccchhhcCC
Confidence             9999999999999999999999

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-38  Score=265.49  Aligned_cols=256  Identities=21%  Similarity=0.253  Sum_probs=222.5

Q ss_pred             CCCccccceeeeecccC-----ccCCCCc---cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCC
Q 017421           75 KRHLPVSTVKMLAGREG-----NYSGRGR---FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS  146 (372)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  146 (372)
                      +.+...+....+.||..     .|++.+.   ..++|.+.++|+...........+|...|.|++|+|||+.||+|+.||
T Consensus       100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg  179 (480)
T KOG0271|consen  100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG  179 (480)
T ss_pred             cccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence            33334556667778877     3677553   378888999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCeEEEEeeecccCCcceEEEEECC-----CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421          147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA  221 (372)
Q Consensus       147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                      +|++||..+++.+-.  .+.+|...|++++|.|     ..++|++++.||.|+|||+..+.+.....             
T Consensus       180 ~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-------------  244 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-------------  244 (480)
T ss_pred             eEEEecCCCCCcccc--cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-------------
Confidence            999999999876554  4668999999999987     57799999999999999999988765554             


Q ss_pred             CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe----------CCCC---------
Q 017421          222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG----------DESG---------  282 (372)
Q Consensus       222 ~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------p~~~---------  282 (372)
                         ||+.+|+|+.|--+| +|++|+.|++|++|+...|.+...+.+|...|+.++.+          .|.+         
T Consensus       245 ---gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  245 ---GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             ---cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence               799999999997654 89999999999999999999999999999999998876          1223         


Q ss_pred             ----------------CEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          283 ----------------HLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       283 ----------------~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                                      ..|++|+.|.++.+|+..       .+.+|..-|+.+.||||++++|+++      ||..|+||
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS------FDkSVkLW  394 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS------FDKSVKLW  394 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee------cccceeee
Confidence                            359999999999999975       3448999999999999999999998      89999999


Q ss_pred             ecccceEEEEEeeeEE
Q 017421          340 NYFLLRTFYSFMVHIL  355 (372)
Q Consensus       340 ~~~~~~~~~~~~~h~~  355 (372)
                      +-.+|+-+.+|.||+.
T Consensus       395 ~g~tGk~lasfRGHv~  410 (480)
T KOG0271|consen  395 DGRTGKFLASFRGHVA  410 (480)
T ss_pred             eCCCcchhhhhhhccc
Confidence            9999999999999963

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=247.66  Aligned_cols=284  Identities=17%  Similarity=0.216  Sum_probs=241.2

Q ss_pred             ccchhHHHHHHh-cccc-------CCccccccccCCCCCccccceeeeecccCcc-----CCCCc---cccCCceeEeee
Q 017421           47 LSALDHEIAQLT-KLKS-------EPKEHFSKEVPGKRHLPVSTVKMLAGREGNY-----SGRGR---FSAADCCHMLSR  110 (372)
Q Consensus        47 ~~~l~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~  110 (372)
                      +++|.+|++++. +++.       ....+....+....+..++..++|+||..++     +++.+   ..+.|..+++|+
T Consensus         4 ~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWD   83 (343)
T KOG0286|consen    4 LEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWD   83 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEE
Confidence            445555555555 3332       3344556667788888999999999999864     33443   267778899999


Q ss_pred             eeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--e-EEEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421          111 YLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYA  187 (372)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  187 (372)
                      .+..+..+.+.-....|..++|+|.|+++|+|+-|....||++.+.  + .......+.+|.+.+.++.|-+ ..+|+++
T Consensus        84 s~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~  162 (343)
T KOG0286|consen   84 SFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTG  162 (343)
T ss_pred             cccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEec
Confidence            9999999999999999999999999999999999999999999854  1 2233445779999999999997 5579999


Q ss_pred             eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421          188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL  266 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  266 (372)
                      +.|.+..+||+++++....+.                ||.+.|.+++++| +++.+++|+.|+..++||++.+.+.+++.
T Consensus       163 SGD~TCalWDie~g~~~~~f~----------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~  226 (343)
T KOG0286|consen  163 SGDMTCALWDIETGQQTQVFH----------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE  226 (343)
T ss_pred             CCCceEEEEEcccceEEEEec----------------CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence            999999999999998766554                7999999999999 99999999999999999999999999999


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                      +|+..|++++|. |+|.-|++|+.|+++|+||+|.-+        ....+|++++||..|++|.++.      -|.++.+
T Consensus       227 ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy------~d~~c~v  299 (343)
T KOG0286|consen  227 GHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY------DDFTCNV  299 (343)
T ss_pred             ccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee------cCCceeE
Confidence            999999999999 999999999999999999999422        4556899999999999999983      3789999


Q ss_pred             eecccceEEEEEeeeE
Q 017421          339 DNYFLLRTFYSFMVHI  354 (372)
Q Consensus       339 w~~~~~~~~~~~~~h~  354 (372)
                      ||.-.++.+..+.||-
T Consensus       300 WDtlk~e~vg~L~GHe  315 (343)
T KOG0286|consen  300 WDTLKGERVGVLAGHE  315 (343)
T ss_pred             eeccccceEEEeeccC
Confidence            9999999999999883

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.7e-38  Score=267.13  Aligned_cols=217  Identities=20%  Similarity=0.217  Sum_probs=201.2

Q ss_pred             cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421           99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      ..+.|...++|.+........+.+|...|..++|+|+|++|++++.|.+-++||++++..+..   ..+|...|.+++|.
T Consensus       236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~---QEGHs~~v~~iaf~  312 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL---QEGHSKGVFSIAFQ  312 (459)
T ss_pred             eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh---hcccccccceeEec
Confidence            366777899999988888889999999999999999999999999999999999998855443   67999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      |||.++++|+.|..-+|||++++.++....                ||..+|..++|+|+|..||||+.|++++|||++.
T Consensus       313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~----------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLA----------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             CCCceeeccCccchhheeecccCcEEEEec----------------ccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            999999999999999999999999866555                7888999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      ...+.++.+|.+-|+.|+|+|..|.+|+|++.|++++||..+      ++.+|...|.++..+||++++++++      |
T Consensus       377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s------~  450 (459)
T KOG0272|consen  377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS------F  450 (459)
T ss_pred             cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec------c
Confidence            999999999999999999996689999999999999999976      5569999999999999999999987      9


Q ss_pred             eceEEEee
Q 017421          333 SPNILLDN  340 (372)
Q Consensus       333 d~~i~lw~  340 (372)
                      |.++++|.
T Consensus       451 DRT~KLW~  458 (459)
T KOG0272|consen  451 DRTIKLWR  458 (459)
T ss_pred             Cceeeecc
Confidence            99999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.4e-35  Score=267.87  Aligned_cols=203  Identities=16%  Similarity=0.180  Sum_probs=186.6

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      .+.+|.++|+++.|+|+.++|++++.|+++++|.+.+...+..   ..+|..||+.+.|+|-|-++|+++.|++-++|..
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~---y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI---YKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEE---ecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            4789999999999999999999999999999999998866654   6699999999999999999999999999999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      ......++..                ||.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+.+|.++|++++||
T Consensus       523 d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S  586 (707)
T KOG0263|consen  523 DHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS  586 (707)
T ss_pred             ccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence            8877665554                788999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                       |+|++|++|+.||.|.+||+..      +.+|.+.|.++.|+.+|..|++++      -|++|++||+..-...
T Consensus       587 -p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg------~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  587 -PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG------ADNSVRLWDLTKVIEL  654 (707)
T ss_pred             -CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC------CCCeEEEEEchhhccc
Confidence             9999999999999999999974      458999999999999999999986      5888999987655444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-34  Score=232.72  Aligned_cols=225  Identities=16%  Similarity=0.175  Sum_probs=192.0

Q ss_pred             ccCCceeEeeeeeCCC-----CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421          100 SAADCCHMLSRYLPVN-----GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  174 (372)
                      .+.|+.+++|.+....     ....+.+|...|..+..++||++.++++.|+++++||+.+++....   +.+|...|.+
T Consensus        34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~---f~GH~~dVls  110 (315)
T KOG0279|consen   34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR---FVGHTKDVLS  110 (315)
T ss_pred             cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE---EEecCCceEE
Confidence            4566778888876543     2467899999999999999999999999999999999999855554   6689889999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEE
Q 017421          175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIY  252 (372)
Q Consensus       175 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~  252 (372)
                      ++|+||.+.+++|+.|.+|++|++...........               ++...|+|+.|+|+  ..+|++++.|++|+
T Consensus       111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~---------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvK  175 (315)
T KOG0279|consen  111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED---------------SHREWVSCVRFSPNESNPIIVSASWDKTVK  175 (315)
T ss_pred             EEecCCCceeecCCCcceeeeeeecccEEEEEecC---------------CCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence            99999999999999999999999976543222221               23569999999998  67999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeee
Q 017421          253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      +||+++-+....+.+|.+.++.+.+| |||.+.++|+.||.+.+||++..+     ++...|.+++|+|+--+|+++.  
T Consensus       176 vWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at--  252 (315)
T KOG0279|consen  176 VWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT--  252 (315)
T ss_pred             EEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc--
Confidence            99999999999999999999999999 999999999999999999998543     6788999999999988898885  


Q ss_pred             eEEEeeceEEEeecccceEEEEE
Q 017421          328 VISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                           +..|++||..++..+..+
T Consensus       253 -----~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  253 -----ATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             -----CCceEEEeccchhhhhhc
Confidence                 555777777766655444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-33  Score=228.27  Aligned_cols=213  Identities=17%  Similarity=0.186  Sum_probs=181.1

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+++|.+.|+++.|++|.++|++++.||.+.|||.-+..+...+..   ....|..++|+|.++++++|+.|+...||+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            67899999999999999999999999999999999988766665332   233699999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      +.+.............          .||.+.+.|+.|-+| ..|++++.|.++.+||+++++.+..+.+|.+.|.++++
T Consensus       126 ls~~d~~g~~~v~r~l----------~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSREL----------AGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             cccccccccceeeeee----------cCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence            9865332222222111          268899999999885 46899999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +|.+++.+++|+-|+..++||+|      ++.+|...|+++.|.|+|.-+++++      -|++.+++|+...+++..|
T Consensus       195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS------DD~tcRlyDlRaD~~~a~y  267 (343)
T KOG0286|consen  195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS------DDATCRLYDLRADQELAVY  267 (343)
T ss_pred             CCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC------CCceeEEEeecCCcEEeee
Confidence            95599999999999999999998      5669999999999999999999997      3677777777776655444

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-33  Score=233.44  Aligned_cols=210  Identities=23%  Similarity=0.259  Sum_probs=179.9

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|.++|.|++|+|+|..|++|+.|.++++||+.+......   .++|...|.+++|+|||+.|++|+.||.|++||
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t---~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT---CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee---ecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            45789999999999999999999999999999999998766554   779999999999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  272 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v  272 (372)
                      .++|+......               .||...|++++|.|     ..++|++++.||.|+|||+..++++..+.+|..+|
T Consensus       186 pktg~~~g~~l---------------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V  250 (480)
T KOG0271|consen  186 PKTGQQIGRAL---------------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV  250 (480)
T ss_pred             CCCCCcccccc---------------cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence            99988632221               26889999999986     56899999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEec-----------cCCCe---------------
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFN-----------PCNKY---------------  320 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s-----------~~g~~---------------  320 (372)
                      +|+.|-  ...+|++|+.|++|++|+..      .+++|..+|+.++.+           |.|+.               
T Consensus       251 TCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY  328 (480)
T KOG0271|consen  251 TCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY  328 (480)
T ss_pred             EEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence            999995  55699999999999999975      577999999988877           33433               


Q ss_pred             ----------EEEEeeeeEEEeeceEEEeecccc-eEEEEEeee
Q 017421          321 ----------LIIYLILVISIYSPNILLDNYFLL-RTFYSFMVH  353 (372)
Q Consensus       321 ----------l~~~~~~~~~~~d~~i~lw~~~~~-~~~~~~~~h  353 (372)
                                |++++      -|.++.||+-... +++....||
T Consensus       329 ~~~~~~~~erlVSgs------Dd~tlflW~p~~~kkpi~rmtgH  366 (480)
T KOG0271|consen  329 EAVLKDSGERLVSGS------DDFTLFLWNPFKSKKPITRMTGH  366 (480)
T ss_pred             HHhhccCcceeEEec------CCceEEEecccccccchhhhhch
Confidence                      77775      3688999986544 466666666

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=214.37  Aligned_cols=230  Identities=17%  Similarity=0.144  Sum_probs=196.7

Q ss_pred             ccCCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+....++++++.....  ...+.+|...|.++.|..+|+++++|+.||+++|||++....-+    ...+.++|.++..
T Consensus        57 aa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR----~~~~~spVn~vvl  132 (311)
T KOG0315|consen   57 AAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR----NYQHNSPVNTVVL  132 (311)
T ss_pred             hccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch----hccCCCCcceEEe
Confidence            44556788888777654  46688999999999999999999999999999999999842222    4456679999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      +|+...|+++..+|.|++||+....+.......               -...|.++...|||.+++.+...|.+++|++-
T Consensus       133 hpnQteLis~dqsg~irvWDl~~~~c~~~liPe---------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  133 HPNQTELISGDQSGNIRVWDLGENSCTHELIPE---------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             cCCcceEEeecCCCcEEEEEccCCccccccCCC---------------CCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence            999999999999999999999887653322211               11379999999999999999999999999986


Q ss_pred             CC------eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          258 AN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       258 ~~------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +.      +++..++.|.+.+..+.+| |++++|++++.|.+++||+...       +++|..+++.++||.||+||+++
T Consensus       198 ~~~~~s~l~P~~k~~ah~~~il~C~lS-Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  198 NHQTASELEPVHKFQAHNGHILRCLLS-PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             CCCccccceEhhheecccceEEEEEEC-CCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence            54      3566788999999999999 9999999999999999999873       45888999999999999999999


Q ss_pred             eeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421          325 LILVISIYSPNILLDNYFLLRTFYSFMVHIL  355 (372)
Q Consensus       325 ~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~  355 (372)
                      +      -|...++|+...+++++.+.+|..
T Consensus       277 s------sd~~~rlW~~~~~k~v~qy~gh~K  301 (311)
T KOG0315|consen  277 S------SDHTARLWDLSAGKEVRQYQGHHK  301 (311)
T ss_pred             C------CCCceeecccccCceeeecCCccc
Confidence            6      589999999999999999999953

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-30  Score=211.58  Aligned_cols=234  Identities=18%  Similarity=0.149  Sum_probs=191.0

Q ss_pred             ceeeeecccCcc-----CCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 017421           82 TVKMLAGREGNY-----SGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV  153 (372)
Q Consensus        82 ~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  153 (372)
                      +.+.+.||....     +.++.|   .+.|+..++|+....+...+|.+|...|.+++|++|.+.+++|+.|.+|++|++
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            356677776643     344444   677788999999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEeeecccCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEE
Q 017421          154 ERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF  231 (372)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  231 (372)
                      ... +..+.. ...+..-|.++.|+|+  ...|++++.|++|++||+++.+......                ||+..++
T Consensus       135 ~g~-ck~t~~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~----------------gh~~~v~  196 (315)
T KOG0279|consen  135 LGV-CKYTIH-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI----------------GHSGYVN  196 (315)
T ss_pred             ccc-EEEEEe-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc----------------cccccEE
Confidence            765 333322 2222667999999997  7889999999999999999877544333                6888999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------
Q 017421          232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------  303 (372)
Q Consensus       232 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------  303 (372)
                      .+++||||.++++|+.||.+.+||++.++.+..+. |...|.+++|+ |+.-.|+.+ .+..|+|||+.+..        
T Consensus       197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs-pnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS-PNRYWLCAA-TATSIKIWDLESKAVVEELKLD  273 (315)
T ss_pred             EEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec-CCceeEeec-cCCceEEEeccchhhhhhcccc
Confidence            99999999999999999999999999999987775 78899999999 887777766 45569999987311        


Q ss_pred             -------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          304 -------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       304 -------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                             .......+++|+++|+.|+++-      -|+.|++|.+.
T Consensus       274 ~~g~s~~~~~~~clslaws~dG~tLf~g~------td~~irv~qv~  313 (315)
T KOG0279|consen  274 GIGPSSKAGDPICLSLAWSADGQTLFAGY------TDNVIRVWQVA  313 (315)
T ss_pred             ccccccccCCcEEEEEEEcCCCcEEEeee------cCCcEEEEEee
Confidence                   1234468899999999999883      37888999764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-31  Score=229.70  Aligned_cols=221  Identities=15%  Similarity=0.185  Sum_probs=188.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...|++++|+.+|.+||+|+.||.++||+.... .+.   .+..|+++|.++.|+.+|.+|++++.|+++.+||..++..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            467999999999999999999999999998755 333   3778999999999999999999999999999999988887


Q ss_pred             eeecceeecc-ccc------ceecc-C-----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          204 ESLANVTEIH-DGL------DFSAA-D-----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       204 ~~~~~~~~~~-~~~------~~~~~-~-----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      .....+.... ..+      .|... .                 -.||.+.|.++.|+|.|.+|++++.|++++||.+..
T Consensus       311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            6655543332 111      11111 0                 147999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCCeEEEEEeCC--------CCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEE
Q 017421          259 NKLSLRILAHTSDVNTVCFGDE--------SGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~--------~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ..+...+.+|...|+.+.|+|.        .+..+++++.|++|++||+.      ++..|..+|++++|+|+|+++|+|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence            9999999999999999999932        23579999999999999987      455899999999999999999999


Q ss_pred             eeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          325 LILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       325 ~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      +      .|+.+.+|+..+++.++++.+-.
T Consensus       471 s------~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  471 S------LDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             C------CCCeeEeccccchheeEeecCCC
Confidence            7      79999999999999999987654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.2e-30  Score=237.42  Aligned_cols=225  Identities=16%  Similarity=0.173  Sum_probs=198.1

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH  183 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (372)
                      ..+.+|.+....-....++|...+.+++++|||+++|+|+.||.|+|||...+-+...   ...|...|+.+.|+..++.
T Consensus       330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT---FteHts~Vt~v~f~~~g~~  406 (893)
T KOG0291|consen  330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT---FTEHTSGVTAVQFTARGNV  406 (893)
T ss_pred             ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE---eccCCCceEEEEEEecCCE
Confidence            3678899988888888999999999999999999999999999999999999977776   7789999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeEE
Q 017421          184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLS  262 (372)
Q Consensus       184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg-~i~iwd~~~~~~~  262 (372)
                      +++++.||+|+.||+...+.-+....+..               ....|++..|.|.++++|+.|. .|.+|++++|+.+
T Consensus       407 llssSLDGtVRAwDlkRYrNfRTft~P~p---------------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll  471 (893)
T KOG0291|consen  407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEP---------------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL  471 (893)
T ss_pred             EEEeecCCeEEeeeecccceeeeecCCCc---------------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence            99999999999999988776554443332               2678999999999999999886 4999999999999


Q ss_pred             EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421          263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI  336 (372)
Q Consensus       263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i  336 (372)
                      ..+.+|+++|.+++|+ |++..|+++|.|.+||+||+-.-      -.+...+..++|+|+|+-|++++      -|++|
T Consensus       472 DiLsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT------ldgqI  544 (893)
T KOG0291|consen  472 DILSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT------LDGQI  544 (893)
T ss_pred             ehhcCCCCcceeeEEc-cccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE------ecceE
Confidence            9999999999999999 99999999999999999998522      15667889999999999999986      58999


Q ss_pred             EEeecccceEEEEEeee
Q 017421          337 LLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       337 ~lw~~~~~~~~~~~~~h  353 (372)
                      .+||...+....+..|-
T Consensus       545 tf~d~~~~~q~~~Idgr  561 (893)
T KOG0291|consen  545 TFFDIKEAVQVGSIDGR  561 (893)
T ss_pred             EEEEhhhceeeccccch
Confidence            99998888777665554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=7.5e-31  Score=219.87  Aligned_cols=213  Identities=17%  Similarity=0.150  Sum_probs=193.2

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|.+.|.|+++.|-..+|++|+.|++|+|||+.++.....   +.+|...|..+++++...++++++.|+.|+.||
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            46789999999999999999999999999999999999977665   668888999999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      ++..+.++...                ||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+
T Consensus       222 Le~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  222 LEYNKVIRHYH----------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             chhhhhHHHhc----------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence            99988755554                78999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      . +....+++|+.|++|++||++      ++..|...|.+++.+|....+|+++       ..+|+-|++..|.-+..+.
T Consensus       286 ~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-------~dnik~w~~p~g~f~~nls  357 (460)
T KOG0285|consen  286 Q-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-------PDNIKQWKLPEGEFLQNLS  357 (460)
T ss_pred             e-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-------CccceeccCCccchhhccc
Confidence            9 666679999999999999998      4558999999999999988888884       6678999999998888888


Q ss_pred             eeEEEe
Q 017421          352 VHILFS  357 (372)
Q Consensus       352 ~h~~~~  357 (372)
                      +|..+.
T Consensus       358 gh~~ii  363 (460)
T KOG0285|consen  358 GHNAII  363 (460)
T ss_pred             ccccee
Confidence            886555

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=7.2e-31  Score=240.38  Aligned_cols=200  Identities=22%  Similarity=0.301  Sum_probs=182.6

Q ss_pred             ceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 017421           82 TVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV  153 (372)
Q Consensus        82 ~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  153 (372)
                      ..+.+.||...     |++..+|   .+.|...++|.+..........+|..+|+.+.|+|.|-+||+++.|++.++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            45568888874     5666665   566689999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEE
Q 017421          154 ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL  233 (372)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  233 (372)
                      .....++.   ..+|-+.|.|+.|+|+..++++|+.|.+|++||+.+|...+++.                ||.++|.++
T Consensus       523 d~~~PlRi---faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~----------------GH~~~V~al  583 (707)
T KOG0263|consen  523 DHNKPLRI---FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT----------------GHKGPVTAL  583 (707)
T ss_pred             ccCCchhh---hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec----------------CCCCceEEE
Confidence            87655543   67898999999999999999999999999999999999877775                799999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       234 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                      +|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|+++.|+ .+|..||+|+.|.+|++||+..
T Consensus       584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS-~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS-RDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe-cCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999999999999999999999999999999 9999999999999999999873

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.9e-31  Score=220.53  Aligned_cols=236  Identities=16%  Similarity=0.171  Sum_probs=208.7

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+....+...-+++|...|..++|+..|+++++++.|-.+++||..+...  ......+|...|.++.|-|
T Consensus       126 as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~--c~ks~~gh~h~vS~V~f~P  203 (406)
T KOG0295|consen  126 ASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR--CIKSLIGHEHGVSSVFFLP  203 (406)
T ss_pred             ecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH--HHHHhcCcccceeeEEEEe
Confidence            44578899999999998888999999999999999999999999999999999987321  2223557777899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      .|.+|++++.|.+|+.|++.++-+...+.                +|...|..++.+.||.++++++.|.+|++|-+.++
T Consensus       204 ~gd~ilS~srD~tik~We~~tg~cv~t~~----------------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~  267 (406)
T KOG0295|consen  204 LGDHILSCSRDNTIKAWECDTGYCVKTFP----------------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK  267 (406)
T ss_pred             cCCeeeecccccceeEEecccceeEEecc----------------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence            99999999999999999999998866655                67789999999999999999999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCC--------------CCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCC
Q 017421          260 KLSLRILAHTSDVNTVCFGDE--------------SGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNK  319 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~--------------~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~  319 (372)
                      ++...+..|+-+|.|++|.|.              .++++++++.|++|++||+.      ++.+|..+|.+++|+|.|+
T Consensus       268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk  347 (406)
T KOG0295|consen  268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK  347 (406)
T ss_pred             hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence            998999999999999999741              23599999999999999998      4569999999999999999


Q ss_pred             eEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEEEeee
Q 017421          320 YLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGY  359 (372)
Q Consensus       320 ~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~~~~~  359 (372)
                      ||+++.      -|+++++||+.+++....+..|-.|-.-
T Consensus       348 yi~Sca------DDktlrvwdl~~~~cmk~~~ah~hfvt~  381 (406)
T KOG0295|consen  348 YILSCA------DDKTLRVWDLKNLQCMKTLEAHEHFVTS  381 (406)
T ss_pred             EEEEEe------cCCcEEEEEeccceeeeccCCCcceeEE
Confidence            999986      4899999999999999999888665543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.2e-29  Score=236.51  Aligned_cols=237  Identities=24%  Similarity=0.231  Sum_probs=200.7

Q ss_pred             ccCCCCcc---ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeec
Q 017421           92 NYSGRGRF---SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILA  165 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~  165 (372)
                      .|++++.+   ...++.+++|......  ....+.+|...|++++|+|+++++++++.|++|+|||+... ..+..   .
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~---l  242 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT---L  242 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE---e
Confidence            35555554   5566778888885555  45556889999999999999999999999999999999443 44444   6


Q ss_pred             ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE
Q 017421          166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  245 (372)
Q Consensus       166 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~  245 (372)
                      .+|...|++++|+|+++++++|+.|++|++||++++++.....                +|...|++++|++++++|+++
T Consensus       243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----------------~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK----------------GHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee----------------ccCCceEEEEECCCCCEEEEc
Confidence            6999999999999999999999999999999999988766554                688899999999999999999


Q ss_pred             eCCCeEEEEECCCCe--EEEEeecCCCC--eEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCC---CeeEE
Q 017421          246 SSDDCIYVYDLEANK--LSLRILAHTSD--VNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSIN---PCNKY  312 (372)
Q Consensus       246 s~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~---~v~~~  312 (372)
                      +.|+.|++||+.++.  +...+.++...  +++++|+ |++.+|+++..|+.+++||++..      ..|..   .+.+.
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence            999999999999998  56777766655  9999999 99999999999999999999843      24444   34555


Q ss_pred             EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      ..++.+.+++++.      .|+.|.+|+..++..+..+.+|.
T Consensus       386 ~~~~~~~~i~sg~------~d~~v~~~~~~s~~~~~~l~~h~  421 (456)
T KOG0266|consen  386 TLSTGGKLIYSGS------EDGSVYVWDSSSGGILQRLEGHS  421 (456)
T ss_pred             cccCCCCeEEEEe------CCceEEEEeCCccchhhhhcCCC
Confidence            6678899999886      79999999999999999999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.4e-29  Score=236.07  Aligned_cols=210  Identities=23%  Similarity=0.288  Sum_probs=183.4

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC-
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-  200 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-  200 (372)
                      .+...|.++.|+++|+.+++++.++.+++|+....+. .......+|...|..++|+|+++++++++.|++|++||+.. 
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            3478899999999999999999999999999976652 11122468888999999999999999999999999999943 


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      +.......                ||...|++++|+|+|+++++|+.|++|++||++++++...+.+|...|++++|+ +
T Consensus       236 ~~~~~~l~----------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~  298 (456)
T KOG0266|consen  236 GRNLKTLK----------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-P  298 (456)
T ss_pred             CeEEEEec----------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-C
Confidence            34444333                688899999999999999999999999999999999999999999999999999 9


Q ss_pred             CCCEEEEEeCCCeEEEEeccccc--------CCCC--CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          281 SGHLIYSGSDDNLCKVNSVLLLT--------RSIN--PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       281 ~~~~l~s~~~dg~i~vwd~~~~~--------~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      ++++|++++.|+.|++||+.+..        .+..  +++.+.|+|++.+++++.      -|+.+++||+..++....+
T Consensus       299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~------~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS------LDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec------CCCeEEEEEccCCcceeee
Confidence            99999999999999999997443        2222  589999999999999985      4779999999999999999


Q ss_pred             eeeEE
Q 017421          351 MVHIL  355 (372)
Q Consensus       351 ~~h~~  355 (372)
                      .+|..
T Consensus       373 ~~~~~  377 (456)
T KOG0266|consen  373 TGHSN  377 (456)
T ss_pred             cccCC
Confidence            99864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=201.69  Aligned_cols=240  Identities=17%  Similarity=0.176  Sum_probs=202.7

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+-|..+++|....+.....++...+.|+.+.+.|+++.||+++. ..|++||+.++... ......+|...|+++.|..
T Consensus        16 A~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   16 AGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQC   93 (311)
T ss_pred             ccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEee
Confidence            345678889999988888888888999999999999999999887 68999999987543 2233667878899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      +|+++++|+.||+++|||++...+.+...                 |.++|+++..+|+...|++|..+|.|++||+...
T Consensus        94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             cCeEEEecCCCceEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            99999999999999999999866655444                 5569999999999999999999999999999988


Q ss_pred             eEEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------------cccCCCCCeeEEEeccCCCeEEEEee
Q 017421          260 KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------------LLTRSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       260 ~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------------~~~~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      .+...+. ....+|.++... ++|.+++.+...|.+++|++-            .++.|...+..+.+|||+++|++++ 
T Consensus       157 ~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-  234 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-  234 (311)
T ss_pred             ccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-
Confidence            7665553 445689999999 999999999999999999985            3457888999999999999999986 


Q ss_pred             eeEEEeeceEEEeecccc-eEEEEEeee------EEEe---eecccCCc
Q 017421          327 LVISIYSPNILLDNYFLL-RTFYSFMVH------ILFS---GYLHNDHN  365 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~~~-~~~~~~~~h------~~~~---~~~~~~~~  365 (372)
                           .|.++++|+..+. +....+.+|      +.|+   -||-...+
T Consensus       235 -----sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  235 -----SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             -----CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence                 6899999998887 777777787      5665   45555444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.3e-29  Score=201.23  Aligned_cols=204  Identities=20%  Similarity=0.278  Sum_probs=174.6

Q ss_pred             ccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      ..+.+|+++++.++|+|- |..||+++.|+.|+||++..+. -..+.....+|+..|.+++|+|.|++|++++.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            456789999999999997 8999999999999999998532 22233344578889999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEeecCCCCe
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDV  272 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v  272 (372)
                      |.-..+.......+              .||.+.|.+++|+++|++||+++.|..|.||.+..+   ++...++.|...|
T Consensus        88 w~k~~~efecv~~l--------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV  153 (312)
T KOG0645|consen   88 WKKEDGEFECVATL--------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV  153 (312)
T ss_pred             eecCCCceeEEeee--------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence            99876665433222              168889999999999999999999999999999754   4778889999999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEecc---------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVL---------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~---------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      ..+.|+ |...+|++++.|++|++|+-.         ++.+|...|.+++|+|.|..|++++      -|+++++|.+.
T Consensus       154 K~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s------dD~tv~Iw~~~  225 (312)
T KOG0645|consen  154 KHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS------DDGTVSIWRLY  225 (312)
T ss_pred             cEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec------CCcceEeeeec
Confidence            999999 999999999999999999754         5668889999999999999999886      47888888744

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=5.1e-31  Score=224.26  Aligned_cols=200  Identities=19%  Similarity=0.219  Sum_probs=178.6

Q ss_pred             CccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          117 PWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       117 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      ...++. |...|++++|+|+...|++++.||+|+|||.........   +.+|.+.|.+++|+|...+|++++.|..|++
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v---L~GHgwdVksvdWHP~kgLiasgskDnlVKl  248 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV---LRGHGWDVKSVDWHPTKGLIASGSKDNLVKL  248 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe---eccCCCCcceeccCCccceeEEccCCceeEe
Confidence            334444 559999999999999999999999999999987644443   5799999999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      ||.+++.++....                +|...|..+.|+|++++|++++.|..++++|+++.+.++++.+|...|+++
T Consensus       249 WDprSg~cl~tlh----------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~  312 (464)
T KOG0284|consen  249 WDPRSGSCLATLH----------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL  312 (464)
T ss_pred             ecCCCcchhhhhh----------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence            9999999866554                688899999999999999999999999999999989999999999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      .|+|-...+|.+|+.||.|..|.+..       ...|...|++++|+|=|..|++++      -|.++++|.-
T Consensus       313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs------nd~t~rfw~r  379 (464)
T KOG0284|consen  313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS------NDRTVRFWTR  379 (464)
T ss_pred             ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecC------CCcceeeecc
Confidence            99988899999999999999999862       237899999999999999999986      5888888853

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.1e-30  Score=222.25  Aligned_cols=216  Identities=16%  Similarity=0.204  Sum_probs=186.6

Q ss_pred             CceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC
Q 017421          103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR  182 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (372)
                      ..-+.+|+........+++.|..+|+++.|+++|.++++|+.+|.|++|+..-.. +..  ....|...|++++|+|+..
T Consensus       117 SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~--~~ahh~eaIRdlafSpnDs  193 (464)
T KOG0284|consen  117 SGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI--IQAHHAEAIRDLAFSPNDS  193 (464)
T ss_pred             cccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH--hhHhhhhhhheeccCCCCc
Confidence            3456678877777777889999999999999999999999999999999987542 111  1334447899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE
Q 017421          183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS  262 (372)
Q Consensus       183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  262 (372)
                      .|++++.||+|+|||....+......                ||...|.+++|+|...+|++|+.|..|++||.++++++
T Consensus       194 kF~t~SdDg~ikiWdf~~~kee~vL~----------------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl  257 (464)
T KOG0284|consen  194 KFLTCSDDGTIKIWDFRMPKEERVLR----------------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL  257 (464)
T ss_pred             eeEEecCCCeEEEEeccCCchhheec----------------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence            99999999999999998877654443                78889999999999999999999999999999999999


Q ss_pred             EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421          263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI  336 (372)
Q Consensus       263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i  336 (372)
                      .++.+|...|..+.|+ +++++|+++|.|..++++|+++      .++|...|+++.|+|-..-|++..     -||+.+
T Consensus       258 ~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg-----g~Dgsv  331 (464)
T KOG0284|consen  258 ATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG-----GSDGSV  331 (464)
T ss_pred             hhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec-----cCCCce
Confidence            9999999999999999 9999999999999999999984      448999999999999876655441     279999


Q ss_pred             EEeeccc
Q 017421          337 LLDNYFL  343 (372)
Q Consensus       337 ~lw~~~~  343 (372)
                      ..|.+..
T Consensus       332 vh~~v~~  338 (464)
T KOG0284|consen  332 VHWVVGL  338 (464)
T ss_pred             EEEeccc
Confidence            9998773

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-29  Score=200.40  Aligned_cols=214  Identities=16%  Similarity=0.193  Sum_probs=192.9

Q ss_pred             CCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421          113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  192 (372)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  192 (372)
                      |......+..+.++|..+.|+-||++.++++.|.+|++|+...+..+..   ..+|...|..++.+.|...|++++.|..
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCce
Confidence            4455667888999999999999999999999999999999999977776   6688889999999999999999999999


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTS  270 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~  270 (372)
                      +.+||+++|+......                ||.+.|+.+.|+.+...+++|+.|.++++||.++.  ++++.+.....
T Consensus        83 v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             EEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence            9999999999876665                78899999999999999999999999999999865  57888888888


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      .|.++..+   +..|++|+.||++|.||+|...    ....+|++++|+++++..+++.      -|++++|-|-.+|+.
T Consensus       147 ~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~------l~stlrLlDk~tGkl  217 (307)
T KOG0316|consen  147 GVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS------LDSTLRLLDKETGKL  217 (307)
T ss_pred             ceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee------ccceeeecccchhHH
Confidence            99999886   6789999999999999999543    5678999999999999988774      599999999999999


Q ss_pred             EEEEeeeE
Q 017421          347 FYSFMVHI  354 (372)
Q Consensus       347 ~~~~~~h~  354 (372)
                      +.+|.||.
T Consensus       218 L~sYkGhk  225 (307)
T KOG0316|consen  218 LKSYKGHK  225 (307)
T ss_pred             HHHhcccc
Confidence            99999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.3e-29  Score=220.13  Aligned_cols=231  Identities=17%  Similarity=0.185  Sum_probs=198.6

Q ss_pred             eeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEE
Q 017421          108 LSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLV  185 (372)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  185 (372)
                      ...+.|....+.+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +.+++.   ..+|..+|.++.|+++|..++
T Consensus       198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt---f~gH~k~Vrd~~~s~~g~~fL  274 (503)
T KOG0282|consen  198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT---FKGHRKPVRDASFNNCGTSFL  274 (503)
T ss_pred             ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh---hhcchhhhhhhhccccCCeee
Confidence            345567777788899999999999999 899999999999999999987 445554   779999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEE
Q 017421          186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLR  264 (372)
Q Consensus       186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~  264 (372)
                      +++.|+.|++||+++|++.......                 ..++|+.|+|++ +.+++|+.|+.|+.||+++++.++.
T Consensus       275 S~sfD~~lKlwDtETG~~~~~f~~~-----------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe  337 (503)
T KOG0282|consen  275 SASFDRFLKLWDTETGQVLSRFHLD-----------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE  337 (503)
T ss_pred             eeecceeeeeeccccceEEEEEecC-----------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence            9999999999999999986655432                 278999999998 8889999999999999999999999


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------------------------------------------
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------------------------------------------  301 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------------------------------------------  301 (372)
                      +..|-+.|..+.|- ++|+.+++.+.|++++||+.+.                                           
T Consensus       338 Yd~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  338 YDRHLGAILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             HHhhhhheeeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence            99999999999999 9999999999999999999751                                           


Q ss_pred             ---------ccCCC--CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee-EEEeeecccCCc
Q 017421          302 ---------LTRSI--NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH-ILFSGYLHNDHN  365 (372)
Q Consensus       302 ---------~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h-~~~~~~~~~~~~  365 (372)
                               +++|.  +--..+.|||||.+|++|.      -||.+.+||+.+-+.+..+.+| ..-.+...++++
T Consensus       417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd------sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD------SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             ccccCHhhhhcceeccCceeeEEEcCCCCeEEeec------CCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence                     01222  2346789999999999995      5899999999999999999999 444566655555

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.6e-27  Score=221.69  Aligned_cols=211  Identities=16%  Similarity=0.083  Sum_probs=169.4

Q ss_pred             ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEE----EEeeecccCCcceEEEEECCCC-CEEEEEeCCC
Q 017421          118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSP  191 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg  191 (372)
                      ..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++...    .....+.+|...|.+++|+|++ ++|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            45789999999999999 8899999999999999999764211    1123356888899999999975 6899999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  271 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  271 (372)
                      .|++||++++.......                +|...|.+++|+|+|++|++++.|+.|++||+++++.+..+.+|.+.
T Consensus       149 tVrIWDl~tg~~~~~l~----------------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIK----------------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             EEEEEECCCCeEEEEEc----------------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence            99999999886543322                46678999999999999999999999999999999998888888765


Q ss_pred             -eEEEEEeCCCCCEEEEEe----CCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421          272 -VNTVCFGDESGHLIYSGS----DDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       272 -v~~~~~sp~~~~~l~s~~----~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                       +..+.|. +++..+++++    .|+.|++||++...        .....+....|++++++|++++     .-|++|++
T Consensus       213 ~~~~~~w~-~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg-----kgDg~Iri  286 (493)
T PTZ00421        213 KSQRCLWA-KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS-----KGEGNIRC  286 (493)
T ss_pred             cceEEEEc-CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE-----eCCCeEEE
Confidence             3467888 6666666654    47999999998543        1223455667999999988774     12899999


Q ss_pred             eecccceEEEEE
Q 017421          339 DNYFLLRTFYSF  350 (372)
Q Consensus       339 w~~~~~~~~~~~  350 (372)
                      ||+.+++.+..+
T Consensus       287 wdl~~~~~~~~~  298 (493)
T PTZ00421        287 FELMNERLTFCS  298 (493)
T ss_pred             EEeeCCceEEEe
Confidence            999988866543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=6.6e-29  Score=215.73  Aligned_cols=239  Identities=16%  Similarity=0.188  Sum_probs=194.4

Q ss_pred             CCCccccceeeeecccCccCCCCcc---------ccCCceeEeeeeeC-CCCCccccCCCCceEEEEECCCCCEEEEEeC
Q 017421           75 KRHLPVSTVKMLAGREGNYSGRGRF---------SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ  144 (372)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  144 (372)
                      +..+|.+....+.||..+.+....|         .+.|..+.+|+++. ......+.+|..+|..++|+++|..|++++.
T Consensus       199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence            3444666777888888865443322         67788899999998 5567789999999999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCC
Q 017421          145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  223 (372)
Q Consensus       145 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (372)
                      |+.|++||+++|+.+......    ..++++.|+|++ +.+++|+.|+.|+.||+++++......               
T Consensus       279 D~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---------------  339 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---------------  339 (503)
T ss_pred             ceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------
Confidence            999999999999887764432    268999999988 788999999999999999998644332               


Q ss_pred             CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------
Q 017421          224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---------------------------------------  264 (372)
Q Consensus       224 ~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------------------------  264 (372)
                       .|-+.|..+.|-++|+.+++.++|++++||+.+.+-.+..                                       
T Consensus       340 -~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  340 -RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             -hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence             3667999999999999999999999999999876432211                                       


Q ss_pred             -------eecCC--CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCC-eEEEEeeee
Q 017421          265 -------ILAHT--SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNK-YLIIYLILV  328 (372)
Q Consensus       265 -------~~~~~--~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~-~l~~~~~~~  328 (372)
                             +.+|.  +.-..+.|| |||.+|++|+.||.+.+||.+      .++.|..++..+.|+|... .+|+++   
T Consensus       419 r~nkkK~feGh~vaGys~~v~fS-pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~---  494 (503)
T KOG0282|consen  419 RLNKKKRFEGHSVAGYSCQVDFS-PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG---  494 (503)
T ss_pred             ccCHhhhhcceeccCceeeEEEc-CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc---
Confidence                   12332  234568899 999999999999999999987      4668999999999999854 455554   


Q ss_pred             EEEeeceEEEee
Q 017421          329 ISIYSPNILLDN  340 (372)
Q Consensus       329 ~~~~d~~i~lw~  340 (372)
                         |||.|++|+
T Consensus       495 ---w~G~Ikiwd  503 (503)
T KOG0282|consen  495 ---WDGLIKIWD  503 (503)
T ss_pred             ---cCceeEecC
Confidence               999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=6.8e-28  Score=197.88  Aligned_cols=236  Identities=17%  Similarity=0.175  Sum_probs=199.0

Q ss_pred             cCCCCcc---ccCCceeEeeeeeC-CCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccC
Q 017421           93 YSGRGRF---SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL  168 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  168 (372)
                      |.+.+.+   .+.|+.+.+|+... .+..+.+.+|.++|..+.|.+|++.|++++.|.+|+.||.++++...+   .+.|
T Consensus        55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk---~k~h  131 (338)
T KOG0265|consen   55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK---HKGH  131 (338)
T ss_pred             ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh---hccc
Confidence            4555543   67788899999554 566788999999999999999999999999999999999999988776   6677


Q ss_pred             CcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          169 RWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       169 ~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                      ..-|.++.-+.-| .++.+++.|+++++||+++.........                 ..+++++.|..++..+++|+-
T Consensus       132 ~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-----------------kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  132 TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-----------------KYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             cceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-----------------ceeEEEEEecccccceeeccc
Confidence            7778877744434 4566788899999999998776544421                 237999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------C----CCCCeeEEE
Q 017421          248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------R----SINPCNKYL  313 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~----~~~~v~~~~  313 (372)
                      |+.|++||++.+.....+.+|...|+.+..+ ++|.++.+-+.|.++++||++...          +    .......++
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            9999999999999999999999999999999 999999999999999999998322          1    123346789


Q ss_pred             eccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421          314 FNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL  355 (372)
Q Consensus       314 ~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~  355 (372)
                      |+|++..+.+++      -|..+++||....+.++-+-||..
T Consensus       274 wsp~~~~i~ags------~dr~vyvwd~~~r~~lyklpGh~g  309 (338)
T KOG0265|consen  274 WSPNGTKITAGS------ADRFVYVWDTTSRRILYKLPGHYG  309 (338)
T ss_pred             ccCCCCcccccc------ccceEEEeecccccEEEEcCCcce
Confidence            999999998886      588999999999999999999953

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=4.7e-29  Score=208.48  Aligned_cols=215  Identities=18%  Similarity=0.179  Sum_probs=186.1

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      ...|.++.+|+.........+.+|++.|.|+.|.  .+.|++|+.|.+|+|||+++++.+..   ..+|-..|..+.|+ 
T Consensus       213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t---lihHceaVLhlrf~-  286 (499)
T KOG0281|consen  213 GLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT---LIHHCEAVLHLRFS-  286 (499)
T ss_pred             ccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH---HhhhcceeEEEEEe-
Confidence            4556788999988888889999999999999986  66999999999999999999987765   55777889999997 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                       ..++++++.|..+.+||+.....+.......             ||.+.|+.+.|+  .++|++++.|.+|++|++.++
T Consensus       287 -ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-------------GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  287 -NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-------------GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             -CCEEEEecCCceeEEEeccCchHHHHHHHHh-------------hhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence             5689999999999999998876544444332             688899999987  569999999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      +.++++.+|...|.|+.+.   ++++++|+.|.+|++||+.      .+++|..-|.++.|..  +.+++|.      ||
T Consensus       351 efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGa------YD  419 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGA------YD  419 (499)
T ss_pred             eeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeecc------cc
Confidence            9999999999999999874   8999999999999999986      4669999999999854  5677776      99


Q ss_pred             ceEEEeecccceEE
Q 017421          334 PNILLDNYFLLRTF  347 (372)
Q Consensus       334 ~~i~lw~~~~~~~~  347 (372)
                      |.|++||+.++-..
T Consensus       420 GkikvWdl~aaldp  433 (499)
T KOG0281|consen  420 GKIKVWDLQAALDP  433 (499)
T ss_pred             ceEEEEecccccCC
Confidence            99999998876543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=9.2e-28  Score=197.13  Aligned_cols=212  Identities=18%  Similarity=0.197  Sum_probs=179.1

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.....  .....++|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            345689999999999999999999999999999999765422  233466999999999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      |+++|+.....+                +|..-++.+.-+.-| .++.+++.|+++++||+++...++++. ..-.++++
T Consensus       118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv  180 (338)
T KOG0265|consen  118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV  180 (338)
T ss_pred             ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence            999999865554                577788888744344 456788999999999999998887775 45689999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc----e
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL----R  345 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~----~  345 (372)
                      .|. ..+..+.+|+-|+.|++||++      ++.+|..+|+.+..+|+|.++.+-+      .|.++++||+..-    +
T Consensus       181 ~f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns------Md~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  181 GFK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS------MDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             Eec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc------ccceEEEEEecccCCCCc
Confidence            999 899999999999999999996      5679999999999999999998764      5889999987543    4


Q ss_pred             EEEEEeeeE
Q 017421          346 TFYSFMVHI  354 (372)
Q Consensus       346 ~~~~~~~h~  354 (372)
                      .+.-|.+|.
T Consensus       254 ~v~if~g~~  262 (338)
T KOG0265|consen  254 CVKIFQGHI  262 (338)
T ss_pred             eEEEeecch
Confidence            466677764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=1e-26  Score=204.11  Aligned_cols=245  Identities=19%  Similarity=0.198  Sum_probs=193.9

Q ss_pred             cCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421          101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (372)
                      +.|..+.++.-.|-+....+..|..-|+|+.|+|||.+|++.+.||++.+||-.+++.+..+.....|++.|.+++|+||
T Consensus       167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD  246 (603)
T KOG0318|consen  167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD  246 (603)
T ss_pred             cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC
Confidence            33345556666677777778899999999999999999999999999999999999888876667799999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecceeeccc----cc----------------ce-ecc------CCCCccccEEEE
Q 017421          181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----GL----------------DF-SAA------DDGGYSFGIFSL  233 (372)
Q Consensus       181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~----------------~~-~~~------~~~~h~~~i~~~  233 (372)
                      ++.+++++.|.+++|||+.+.++..........+    ++                .| ++.      .-.||...|+++
T Consensus       247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL  326 (603)
T KOG0318|consen  247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL  326 (603)
T ss_pred             CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence            9999999999999999999988765544332211    11                11 111      115899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEE-----------EEee------------------------------------
Q 017421          234 KFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRIL------------------------------------  266 (372)
Q Consensus       234 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~------------------------------------  266 (372)
                      ..+|++++|++|+.||.|.-||..++..-           ..+.                                    
T Consensus       327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~  406 (603)
T KOG0318|consen  327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS  406 (603)
T ss_pred             EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence            99999999999999999999998765321           0000                                    


Q ss_pred             --------------------------cC--------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccC
Q 017421          267 --------------------------AH--------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTR  304 (372)
Q Consensus       267 --------------------------~~--------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~  304 (372)
                                                .+        .-...+++++ |+++.+++|+.|+.|+||.+.        ....
T Consensus       407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~  485 (603)
T KOG0318|consen  407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE  485 (603)
T ss_pred             CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCcccceeeeec
Confidence                                      00        0123567888 999999999999999999986        2347


Q ss_pred             CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          305 SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       305 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      |..+|+.++||||+.+|+++.      -.+.+.+||+.+........+
T Consensus       486 h~a~iT~vaySpd~~yla~~D------a~rkvv~yd~~s~~~~~~~w~  527 (603)
T KOG0318|consen  486 HRAAITDVAYSPDGAYLAAGD------ASRKVVLYDVASREVKTNRWA  527 (603)
T ss_pred             ccCCceEEEECCCCcEEEEec------cCCcEEEEEcccCceecceee
Confidence            899999999999999999994      357888999988887554444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=8e-28  Score=198.37  Aligned_cols=218  Identities=19%  Similarity=0.202  Sum_probs=182.1

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeeecccCCcceEEEEECCCC
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---------------WKIQKDILAKSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~  181 (372)
                      ...+..|++++.+.+|+|||.++|+|+.|-.|+|.|++..               ..-.....+..|..+|.++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            3456789999999999999999999999999999998721               1111233466888899999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL  261 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  261 (372)
                      ..|++|+.|++|+++|+.......-.+...              ...+|.++.|+|.|.+|+.|++..++++||+++-++
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q--------------d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc  250 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------------DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC  250 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhh--------------ccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence            999999999999999998765443333322              123899999999999999999999999999999988


Q ss_pred             EEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------ccc-CC-CCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          262 SLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLT-RS-INPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       262 ~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~-~~-~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      ...-.   .|.+.|+++.++ +.+++.++++.||.|++||--      ++. .| ...|.+..|..+|++++++.     
T Consensus       251 fvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-----  324 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-----  324 (430)
T ss_pred             eeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-----
Confidence            65543   688999999999 999999999999999999953      222 33 46799999999999999875     


Q ss_pred             EeeceEEEeecccceEEEEEeeeEE
Q 017421          331 IYSPNILLDNYFLLRTFYSFMVHIL  355 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~~~~h~~  355 (372)
                       -|..++||.+.+++.+..|.|-..
T Consensus       325 -~DS~vkLWEi~t~R~l~~YtGAg~  348 (430)
T KOG0640|consen  325 -KDSTVKLWEISTGRMLKEYTGAGT  348 (430)
T ss_pred             -CcceeeeeeecCCceEEEEecCCc
Confidence             699999999999999999988643

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1.4e-27  Score=200.37  Aligned_cols=246  Identities=16%  Similarity=0.148  Sum_probs=213.6

Q ss_pred             CccccceeeeecccC-----ccCCCCc---cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcE
Q 017421           77 HLPVSTVKMLAGREG-----NYSGRGR---FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQI  148 (372)
Q Consensus        77 ~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  148 (372)
                      -.|.+..+++.||..     .+.+...   ..++|+.+.+|++....-...+.+|...|..+++|+--.++++++.|+.|
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV  217 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence            346677888888886     2333332   27888999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccc
Q 017421          149 RIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF  228 (372)
Q Consensus       149 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  228 (372)
                      +.||++..+.++.   ..+|-+.|.+++.+|.-..|++|+.|..++|||+++........                ||..
T Consensus       218 KCwDLe~nkvIR~---YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~----------------GH~~  278 (460)
T KOG0285|consen  218 KCWDLEYNKVIRH---YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS----------------GHTN  278 (460)
T ss_pred             EEEechhhhhHHH---hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec----------------CCCC
Confidence            9999998866665   77898999999999999999999999999999999987654444                7999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cc
Q 017421          229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LL  302 (372)
Q Consensus       229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~  302 (372)
                      +|..+.+.|....+++|+.|++|++||++.++...++..|...|.+++.+ |....||+++.|. |+-|++.      .+
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh-P~e~~fASas~dn-ik~w~~p~g~f~~nl  356 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH-PKENLFASASPDN-IKQWKLPEGEFLQNL  356 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecC-CchhhhhccCCcc-ceeccCCccchhhcc
Confidence            99999999988889999999999999999999999999999999999999 8899999998765 8999986      45


Q ss_pred             cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          303 TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       303 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      .+|...|..+....||-++..+       -++.+.+||+.+|..++.+
T Consensus       357 sgh~~iintl~~nsD~v~~~G~-------dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDGVLVSGG-------DNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             ccccceeeeeeeccCceEEEcC-------CceEEEEEecCcCcccccc
Confidence            5788899999999997666555       3678889999999887766

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.7e-26  Score=214.65  Aligned_cols=218  Identities=15%  Similarity=0.104  Sum_probs=165.1

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeE-EE----EeeecccCCcceEEEEE
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQ----KDILAKSLRWTVTDTSL  177 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~-~~----~~~~~~~~~~~v~~~~~  177 (372)
                      ..+.+|+.........+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.++.. ..    ......+|...|.+++|
T Consensus        54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf  133 (568)
T PTZ00420         54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW  133 (568)
T ss_pred             eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence            34556665554455668899999999999996 78999999999999999976421 11    11234678889999999


Q ss_pred             CCCCCEE-EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 017421          178 SPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL  256 (372)
Q Consensus       178 ~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~  256 (372)
                      +|++..+ ++++.|+.|++||++++.......                 |...|.+++|+|+|.+|++++.|+.|+|||+
T Consensus       134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        134 NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence            9988764 688999999999999887532221                 2247999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCCCeEEE-----EEeCCCCCEEEEEeCCC----eEEEEeccccc------CC---CCCeeEEEeccCC
Q 017421          257 EANKLSLRILAHTSDVNTV-----CFGDESGHLIYSGSDDN----LCKVNSVLLLT------RS---INPCNKYLFNPCN  318 (372)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~-----~~sp~~~~~l~s~~~dg----~i~vwd~~~~~------~~---~~~v~~~~~s~~g  318 (372)
                      ++++.+..+.+|.+.+.+.     .|+ +++.+|++++.|+    .|+|||++...      .+   ...+......++|
T Consensus       197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        197 RKQEIASSFHIHDGGKNTKNIWIDGLG-GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CCCcEEEEEecccCCceeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            9999999999998765443     345 7888899888764    79999998432      11   1222223334557


Q ss_pred             CeEEEEeeeeEEEeeceEEEeecccce
Q 017421          319 KYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      .++++|.      -|++|++|++..+.
T Consensus       276 ~l~lsGk------GD~tIr~~e~~~~~  296 (568)
T PTZ00420        276 LIYLIGK------GDGNCRYYQHSLGS  296 (568)
T ss_pred             CEEEEEE------CCCeEEEEEccCCc
Confidence            7777774      38999999987663

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-27  Score=221.21  Aligned_cols=221  Identities=17%  Similarity=0.158  Sum_probs=195.6

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH  183 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (372)
                      ..+.+|++.-......|..|.++|++++|+|++.+|++|+.|-.|+||+..+.+++..   +.+|-..|..+.|++.-.+
T Consensus        31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft---L~GHlDYVRt~~FHheyPW  107 (1202)
T KOG0292|consen   31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT---LLGHLDYVRTVFFHHEYPW  107 (1202)
T ss_pred             ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh---hccccceeEEeeccCCCce
Confidence            3567899888888899999999999999999999999999999999999998876665   7799999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---
Q 017421          184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---  260 (372)
Q Consensus       184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~---  260 (372)
                      |++++.|-+|+||+..+++++....                ||...|.|..|+|...+++++|.|.+|++||+..-+   
T Consensus       108 IlSASDDQTIrIWNwqsr~~iavlt----------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~  171 (1202)
T KOG0292|consen  108 ILSASDDQTIRIWNWQSRKCIAVLT----------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN  171 (1202)
T ss_pred             EEEccCCCeEEEEeccCCceEEEEe----------------cCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence            9999999999999999999877665                788999999999999999999999999999985210   


Q ss_pred             --------------------------EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCC
Q 017421          261 --------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSI  306 (372)
Q Consensus       261 --------------------------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~  306 (372)
                                                ..+.+.+|...|+-++|+ |.-.+|++|+.|..|++|.+.        +..+|.
T Consensus       172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~  250 (1202)
T KOG0292|consen  172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY  250 (1202)
T ss_pred             CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEEEeccccceeehhhhccc
Confidence                                      123456899999999999 888899999999999999875        566999


Q ss_pred             CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      ++|+++-|+|...++++.+      .|++|++||....+.+..|
T Consensus       251 nnVssvlfhp~q~lIlSns------EDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  251 NNVSSVLFHPHQDLILSNS------EDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             CCcceEEecCccceeEecC------CCccEEEEecccccceeee
Confidence            9999999999988887775      6889999998877776666

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.7e-27  Score=198.22  Aligned_cols=209  Identities=14%  Similarity=0.155  Sum_probs=182.4

Q ss_pred             eEeeeeeCC-CCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE
Q 017421          106 HMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL  184 (372)
Q Consensus       106 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  184 (372)
                      ..+|.+... .......+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++..   ..+|..-|..+..+.||..+
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t---~~~h~ewvr~v~v~~DGti~  250 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT---FPGHSEWVRMVRVNQDGTII  250 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe---ccCchHhEEEEEecCCeeEE
Confidence            455555542 22344578999999999999999999999999999999999988876   67888889999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---------------CCEEEEEeCCC
Q 017421          185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---------------GRELVAGSSDD  249 (372)
Q Consensus       185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---------------~~~l~s~s~dg  249 (372)
                      ++++.|.+|++|-+.++.+.....                +|..+|.|++|-|.               ++++.+++.|+
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR----------------~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELR----------------EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhh----------------ccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence            999999999999999987755554                56778999999762               25899999999


Q ss_pred             eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEE
Q 017421          250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLII  323 (372)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~  323 (372)
                      +|++||+.++.++.++.+|...|..++|+ |.|++|+++..|+++++||++.      +..|..-|+++.|+.+-.++++
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~-p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFS-PGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVT  393 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceeeeeEEc-CCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEe
Confidence            99999999999999999999999999999 9999999999999999999984      4478888999999999999998


Q ss_pred             EeeeeEEEeeceEEEee
Q 017421          324 YLILVISIYSPNILLDN  340 (372)
Q Consensus       324 ~~~~~~~~~d~~i~lw~  340 (372)
                      |+      -|.++++|.
T Consensus       394 Gs------Vdqt~KvwE  404 (406)
T KOG0295|consen  394 GS------VDQTVKVWE  404 (406)
T ss_pred             cc------ccceeeeee
Confidence            85      377788875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=2.5e-26  Score=199.14  Aligned_cols=202  Identities=17%  Similarity=0.161  Sum_probs=169.4

Q ss_pred             eEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----------------------
Q 017421          106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----------------------  162 (372)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------------  162 (372)
                      .++|+. +......+..|.++|.++.|+..|++|++++-|+++.+||..++......                       
T Consensus       259 ~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~t  337 (524)
T KOG0273|consen  259 ARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSST  337 (524)
T ss_pred             EEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCC
Confidence            444443 44556678899999999999999999999999999999998765322211                       


Q ss_pred             ---------------eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcc
Q 017421          163 ---------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS  227 (372)
Q Consensus       163 ---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  227 (372)
                                     ....+|.++|.++.|+|.+.+|++++.|+++++|............                .|.
T Consensus       338 d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~----------------~Hs  401 (524)
T KOG0273|consen  338 DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ----------------AHS  401 (524)
T ss_pred             CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh----------------hhc
Confidence                           1223788899999999999999999999999999987766533332                577


Q ss_pred             ccEEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 017421          228 FGIFSLKFSTDG---------RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS  298 (372)
Q Consensus       228 ~~i~~~~~sp~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd  298 (372)
                      ..|..+.|+|+|         ..+++++.|++|++||+..+.++.++..|..+|++++|+ |+|+++|+|+.||.|++|+
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS-~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS-PNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec-CCCcEEEecCCCCeeEecc
Confidence            799999999964         468899999999999999999999999999999999999 9999999999999999999


Q ss_pred             ccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421          299 VLLLT-----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       299 ~~~~~-----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .++.+     .....|..++|+.+|..|.++.
T Consensus       481 ~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  481 TKTGKLVKSYQGTGGIFELCWNAAGDKLGACA  512 (524)
T ss_pred             ccchheeEeecCCCeEEEEEEcCCCCEEEEEe
Confidence            98544     4456789999999999888763

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=2.1e-25  Score=203.33  Aligned_cols=245  Identities=17%  Similarity=0.192  Sum_probs=197.4

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------------
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------  155 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------------  155 (372)
                      ++.+.++   .+.|...+++.......  +..+.+|...|-++-|..+...+.+.+.||.+.+|....            
T Consensus       153 Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~  232 (893)
T KOG0291|consen  153 WSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDE  232 (893)
T ss_pred             eccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccc
Confidence            3455554   46667777877777666  778899999999999999999999999999999998761            


Q ss_pred             -----------CeE--------EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeccee-ecccc
Q 017421          156 -----------GWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT-EIHDG  215 (372)
Q Consensus       156 -----------~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~  215 (372)
                                 ++.        ..+..........+++.+|++..+.|++|-..|...+|++....++....+. .....
T Consensus       233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t  312 (893)
T KOG0291|consen  233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT  312 (893)
T ss_pred             cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence                       000        0111112223357999999999999999999999999998776654443332 11111


Q ss_pred             ccee---------ccC-----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 017421          216 LDFS---------AAD-----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT  269 (372)
Q Consensus       216 ~~~~---------~~~-----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  269 (372)
                      +.+.         ...                 ..||...+++++++|||+++|+|+.||.|+|||..++-|..++..|+
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt  392 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT  392 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC
Confidence            2222         111                 25899999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------------------------------------------------
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------------------------------------------------  300 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------------------------------------------------  300 (372)
                      ..|+.+.|+ ..|+.+++.+-||+|+.||+.                                                 
T Consensus       393 s~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll  471 (893)
T KOG0291|consen  393 SGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL  471 (893)
T ss_pred             CceEEEEEE-ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence            999999999 999999999999999999984                                                 


Q ss_pred             -cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          301 -LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       301 -~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                       .+.+|.+||.+++|+|+|..|++++      ||.+|++||+...
T Consensus       472 DiLsGHEgPVs~l~f~~~~~~LaS~S------WDkTVRiW~if~s  510 (893)
T KOG0291|consen  472 DILSGHEGPVSGLSFSPDGSLLASGS------WDKTVRIWDIFSS  510 (893)
T ss_pred             ehhcCCCCcceeeEEccccCeEEecc------ccceEEEEEeecc
Confidence             1338999999999999999999998      9999999998776

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.2e-25  Score=182.25  Aligned_cols=215  Identities=14%  Similarity=0.078  Sum_probs=174.3

Q ss_pred             ccCCceeEeeeeeCCCC---Cccc-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLPVNG---PWPV-DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.++.+++|.......   ...+ .+|+..|+.++|+|.|++|++++.|.++.||.-..+ .......+.+|...|.++
T Consensus        33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~V  111 (312)
T KOG0645|consen   33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCV  111 (312)
T ss_pred             ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEE
Confidence            56677788887764221   1112 479999999999999999999999999999997755 333345578999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421          176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD  255 (372)
Q Consensus       176 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd  255 (372)
                      +|+++|++||+++.|..|.||.+..+..........             +|+..|..+.|+|...+|++++.|.+|++|+
T Consensus       112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-------------~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~  178 (312)
T KOG0645|consen  112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-------------EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYR  178 (312)
T ss_pred             EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-------------cccccccEEEEcCCcceeEEeccCCeEEEEe
Confidence            999999999999999999999998665433333333             4777999999999999999999999999998


Q ss_pred             CC---CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--cccCCCCCeeEEEeccCCCeEEEE-eeeeE
Q 017421          256 LE---ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--LLTRSINPCNKYLFNPCNKYLIIY-LILVI  329 (372)
Q Consensus       256 ~~---~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~v~~~~~s~~g~~l~~~-~~~~~  329 (372)
                      -.   ...+.+++.+|...|.+++|+ +.|..|++++.|++++||-..  ....|...++.+.|. +| .|+++ .++.+
T Consensus       179 ~~~dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i  255 (312)
T KOG0645|consen  179 DEDDDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NG-VIASGGGDDAI  255 (312)
T ss_pred             ecCCCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-cc-ceEeccCCCEE
Confidence            76   346899999999999999999 999999999999999999955  334677899999998 54 45544 44444


Q ss_pred             EE
Q 017421          330 SI  331 (372)
Q Consensus       330 ~~  331 (372)
                      .+
T Consensus       256 ~l  257 (312)
T KOG0645|consen  256 RL  257 (312)
T ss_pred             EE
Confidence            44

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=3e-26  Score=192.81  Aligned_cols=232  Identities=15%  Similarity=0.103  Sum_probs=188.2

Q ss_pred             ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421           98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      ...+.|+.-.+|+.-....+..+.+|+..|.++.|+.+|.+||+|..+|.|+||...++.......   ..-..+.=+.|
T Consensus        80 aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~W  156 (399)
T KOG0296|consen   80 ATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKW  156 (399)
T ss_pred             EecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEe
Confidence            346777888899999999999999999999999999999999999999999999999886555433   22234777899


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      +|.+..|+.|+.||.+.+|.+..+.......                ||..++++=.|.|+|+.++++..||+|++||+.
T Consensus       157 Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k  220 (399)
T KOG0296|consen  157 HPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK  220 (399)
T ss_pred             cccccEEEeecCCCcEEEEECCCcceeeEec----------------CCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence            9999999999999999999998864433333                688899999999999999999999999999999


Q ss_pred             CCeEEEEeec------C---------------------------------------------CCCeEEEEEeC--CCCCE
Q 017421          258 ANKLSLRILA------H---------------------------------------------TSDVNTVCFGD--ESGHL  284 (372)
Q Consensus       258 ~~~~~~~~~~------~---------------------------------------------~~~v~~~~~sp--~~~~~  284 (372)
                      +++++..+..      +                                             ...+.|+.+.|  ..=.+
T Consensus       221 tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL  300 (399)
T KOG0296|consen  221 TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL  300 (399)
T ss_pred             CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence            9988776541      1                                             00111222221  23346


Q ss_pred             EEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421          285 IYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL  355 (372)
Q Consensus       285 l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~  355 (372)
                      .|+|+-||+|.|||+..     .-.|..+|+.+.|-+ ..+|+++.      .++.|+.||+.+|+.+..+.||..
T Consensus       301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c------~~g~v~~wDaRtG~l~~~y~GH~~  369 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC------ANGKVRQWDARTGQLKFTYTGHQM  369 (399)
T ss_pred             hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec------cCceEEeeeccccceEEEEecCch
Confidence            78899999999999863     337889999999999 56666664      599999999999999999999954

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.8e-25  Score=195.99  Aligned_cols=229  Identities=23%  Similarity=0.239  Sum_probs=193.5

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      ...+..+.+|+.........+..|...+..+.|+|++++|++++.+|.|++|++.++.....   ...|...+.++.|+|
T Consensus        27 ~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~  103 (289)
T cd00200          27 GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYVSSVAFSP  103 (289)
T ss_pred             eecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE---EeccCCcEEEEEEcC
Confidence            33467788888887776777888999999999999999999999999999999998654444   346666899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      +++++++++.++.|.+||+.+++......                .|...+.++.|+|++.++++++.++.|++||++++
T Consensus       104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  167 (289)
T cd00200         104 DGRILSSSSRDKTIKVWDVETGKCLTTLR----------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG  167 (289)
T ss_pred             CCCEEEEecCCCeEEEEECCCcEEEEEec----------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence            98888888889999999998766533322                35568999999999999998888999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      +....+..|...+.++.|+ ++++.+++++.|+.|++||++.      +..+...+.++.|+|++.+++++.      .|
T Consensus       168 ~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~  240 (289)
T cd00200         168 KCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS------ED  240 (289)
T ss_pred             ccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc------CC
Confidence            8888888898899999999 8998999999999999999973      236777999999999988888774      48


Q ss_pred             ceEEEeecccceEEEEEeeeE
Q 017421          334 PNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       334 ~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      +.+++|+..+++.+..+.+|.
T Consensus       241 ~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         241 GTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             CcEEEEEcCCceeEEEccccC
Confidence            899999999888888887663

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.1e-27  Score=209.77  Aligned_cols=214  Identities=16%  Similarity=0.096  Sum_probs=190.2

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+..++.+|.+++|+|...+++++-.+|.|.||+.++...+.....   ..-||.+..|-+..+++++|+.|..|+||+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEe
Confidence            34556889999999999999999999999999999999877766433   334899999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~  276 (372)
                      ..+++....+.                .|...|++++.+|...+++++++|-+|++||.+. ..+.+++.+|+..|.+++
T Consensus        84 ynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~  147 (794)
T KOG0276|consen   84 YNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA  147 (794)
T ss_pred             cccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence            99988655544                4777999999999999999999999999999975 468899999999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCC--CeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCN--KYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                      |+|.|.+.+++++-|++|+||.+.      ++++|...|+++.|-+-|  .+|++++      -|.++++||+++.++++
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga------DD~tiKvWDyQtk~CV~  221 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA------DDLTIKVWDYQTKSCVQ  221 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC------CCceEEEeecchHHHHH
Confidence            999999999999999999999996      677999999999998866  4888886      37899999999999999


Q ss_pred             EEeeeEEE
Q 017421          349 SFMVHILF  356 (372)
Q Consensus       349 ~~~~h~~~  356 (372)
                      .+.||+-.
T Consensus       222 TLeGHt~N  229 (794)
T KOG0276|consen  222 TLEGHTNN  229 (794)
T ss_pred             Hhhccccc
Confidence            99999643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.6e-26  Score=210.18  Aligned_cols=240  Identities=16%  Similarity=0.184  Sum_probs=198.0

Q ss_pred             cccceeeeecccCccCC-----CC---ccccCCceeEeeeeeCCCC----CccccCCCCceEEEEECCCC-CEEEEEeCC
Q 017421           79 PVSTVKMLAGREGNYSG-----RG---RFSAADCCHMLSRYLPVNG----PWPVDQTTSRAYVSQFSADG-SLFVAGFQA  145 (372)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d  145 (372)
                      +.....++.||....-.     .+   ...+.|+..++|++.....    .....+|.+.|.+++++..+ .+|++++.|
T Consensus       354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D  433 (775)
T KOG0319|consen  354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD  433 (775)
T ss_pred             CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence            33445577888774322     22   2367788999998833322    23457999999999998755 688999999


Q ss_pred             CcEEEEeCCCCeEEEEe------eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccccee
Q 017421          146 SQIRIYDVERGWKIQKD------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS  219 (372)
Q Consensus       146 g~i~vwd~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  219 (372)
                      .++++|++...+.....      .....|...|.+++++|+.++|++|+.|.+.++|+++.........           
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-----------  502 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-----------  502 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-----------
Confidence            99999999863221111      1235778889999999999999999999999999999666554444           


Q ss_pred             ccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       220 ~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                           ||...|.++.|+|..+.++|+|.|++|+||.+.+..++.++.+|...|..+.|- .+|..|++++.||-|++|++
T Consensus       503 -----GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~-~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  503 -----GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI-RNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             -----CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee-eCCcEEEeccCCCcEEEEec
Confidence                 788899999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             c------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          300 L------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       300 ~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +      ++..|...|+++.-+|.+.+++++.      -|+.|.+|.=
T Consensus       577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg------~Dg~i~~wkD  618 (775)
T KOG0319|consen  577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGG------GDGRIIFWKD  618 (775)
T ss_pred             cchhhhhhhhhccceeEEEeecCccceeEecC------CCeEEEEeec
Confidence            7      5679999999999999999888775      4888888853

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.6e-27  Score=188.34  Aligned_cols=217  Identities=14%  Similarity=0.124  Sum_probs=182.3

Q ss_pred             ccCCceeEeeeeeCCCCC-ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVNGP-WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .++|..+++|+..+...| ..++.|...|.++.|++ +++.+++++.|++|++|+...+..+..   ..+|..-|....|
T Consensus        79 a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T---f~gh~~~Iy~a~~  155 (311)
T KOG0277|consen   79 ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT---FNGHNSCIYQAAF  155 (311)
T ss_pred             EecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe---ecCCccEEEEEec
Confidence            667778889886655544 56789999999999999 566788899999999999988877766   7789999999999


Q ss_pred             CC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 017421          178 SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD  255 (372)
Q Consensus       178 ~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd  255 (372)
                      +| ..+.+++++.|+.+++||++.......+.                .|...|.++.|+. +.+.++||+.|+.|+.||
T Consensus       156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~----------------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD  219 (311)
T KOG0277|consen  156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIE----------------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWD  219 (311)
T ss_pred             CCCCCCeEEEccCCceEEEEEecCCCceeEEE----------------eccceeEeecccccCCcEEEecCCCceEEEEe
Confidence            99 78899999999999999998764332222                3667899999987 557889999999999999


Q ss_pred             CCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccC-CCeEEEEee
Q 017421          256 LEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPC-NKYLIIYLI  326 (372)
Q Consensus       256 ~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~-g~~l~~~~~  326 (372)
                      ++.- .++..+.+|.-.|..++|||....+|++++.|-++||||..       +...|+.-|..+.|++- +.++|... 
T Consensus       220 ir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g-  298 (311)
T KOG0277|consen  220 IRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG-  298 (311)
T ss_pred             hhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc-
Confidence            9874 47888899999999999998888999999999999999986       34478888999999985 44566555 


Q ss_pred             eeEEEeeceEEEeec
Q 017421          327 LVISIYSPNILLDNY  341 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~  341 (372)
                           ||..+++|+-
T Consensus       299 -----WDe~l~Vw~p  308 (311)
T KOG0277|consen  299 -----WDELLYVWNP  308 (311)
T ss_pred             -----cccceeeecc
Confidence                 9999999984

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=8.9e-27  Score=211.86  Aligned_cols=239  Identities=17%  Similarity=0.100  Sum_probs=194.5

Q ss_pred             cCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE-EEeeecccCCcceEEEEECC
Q 017421          101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .....++++ ..+......+.+|...|.+++...+|.+|++|+.|.++++|.++++... .......+|...|.+++++.
T Consensus       343 TNs~~lr~y-~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~  421 (775)
T KOG0319|consen  343 TNSPELRLY-TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK  421 (775)
T ss_pred             eCCCceEEE-ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc
Confidence            333455555 4455556688999999999997677899999999999999998554221 22223568888999999977


Q ss_pred             C-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          180 D-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       180 ~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      . ..+|++++.|+++++|++...+..........       ......|...|++++.+|+.++|+||+.|.+.+||++..
T Consensus       422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~-------~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~  494 (775)
T KOG0319|consen  422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC-------RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ  494 (775)
T ss_pred             cCccEEEEecCCceEEEecCCCcccccccceehh-------hHHHHhhcccccceEecCCCceEEecccccceeeecccC
Confidence            4 46789999999999999986332111111000       001124778999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      .....++.+|...|.|+.|+ +..+.++|+|.|++|+||.+.      ++.+|...|..+.|-.+|+.|+++.      .
T Consensus       495 ~~l~~vLsGH~RGvw~V~Fs-~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~------a  567 (775)
T KOG0319|consen  495 LRLLGVLSGHTRGVWCVSFS-KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG------A  567 (775)
T ss_pred             ceEEEEeeCCccceEEEEec-cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc------C
Confidence            99999999999999999999 999999999999999999987      5668999999999999999998875      6


Q ss_pred             eceEEEeecccceEEEEEeeeE
Q 017421          333 SPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       333 d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      ||-|++|++.+...+.++.+|.
T Consensus       568 dGliKlWnikt~eC~~tlD~H~  589 (775)
T KOG0319|consen  568 DGLIKLWNIKTNECEMTLDAHN  589 (775)
T ss_pred             CCcEEEEeccchhhhhhhhhcc
Confidence            9999999999999999998883

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.3e-25  Score=196.85  Aligned_cols=211  Identities=26%  Similarity=0.304  Sum_probs=178.8

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|..+|.+++|+|++++|++++.+|.|.+|++.++.....   ...|...+..+.|+|+++.+++++.+|.|++|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence            34678999999999999999999999999999999987754333   446667788999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      +.+++......                .|...+.++.|+|+++++++++.++.|.+||+++++....+..|...+.+++|
T Consensus        80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  143 (289)
T cd00200          80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF  143 (289)
T ss_pred             cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence            98764432222                35558999999999888888888999999999999888888889999999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      + +++.++++++.|+.|++||++.      +..+...+.++.|+|+++.++++.      .|+.+++||..+++.+..+.
T Consensus       144 ~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~~~i~i~d~~~~~~~~~~~  216 (289)
T cd00200         144 S-PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS------SDGTIKLWDLSTGKCLGTLR  216 (289)
T ss_pred             c-CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec------CCCcEEEEECCCCceecchh
Confidence            9 8788999888899999999873      336677899999999998888775      38889999998888877775


Q ss_pred             eeE
Q 017421          352 VHI  354 (372)
Q Consensus       352 ~h~  354 (372)
                      .|.
T Consensus       217 ~~~  219 (289)
T cd00200         217 GHE  219 (289)
T ss_pred             hcC
Confidence            553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=5.5e-26  Score=195.16  Aligned_cols=233  Identities=19%  Similarity=0.192  Sum_probs=191.0

Q ss_pred             cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421           99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      ..+.|+...+.+....+-...+.||...|+.+.++|+...+++++.|..|+||........   .....|..+|+.+..+
T Consensus       236 TGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---~~~~~h~~~V~~ls~h  312 (506)
T KOG0289|consen  236 TGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---TSSRPHEEPVTGLSLH  312 (506)
T ss_pred             ecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc---cccccccccceeeeec
Confidence            3555667788887777778889999999999999999999999999999999998765432   2356888899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      |.|.+|++++.|+...+.|++++.........              +..-.+++.+|+|||..|.+|+.||.|+|||+.+
T Consensus       313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cCCcEEEEecCCceEEEEEccCCcEEEEEeec--------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            99999999999999999999999875544321              0112689999999999999999999999999999


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEe-eeeEE
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYL-ILVIS  330 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~-~~~~~  330 (372)
                      +..+..|.+|.++|..++|+ .+|-+|++++.|+.|++||+|.++       ....++.++.|.+.|++|++++ +-.+.
T Consensus       379 ~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  379 QTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             ccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            99999999999999999999 999999999999999999999554       3334799999999999998873 11222


Q ss_pred             EeeceEEEeecccceEEEEEeeeE
Q 017421          331 IYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      +++..-+     ..+++..+..|.
T Consensus       458 ~~~k~~k-----~W~~~~~~~~~s  476 (506)
T KOG0289|consen  458 ICKKKTK-----SWTEIKELADHS  476 (506)
T ss_pred             EEecccc-----cceeeehhhhcc
Confidence            2222222     445666666665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.9e-26  Score=179.86  Aligned_cols=248  Identities=17%  Similarity=0.179  Sum_probs=204.3

Q ss_pred             cccceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEE
Q 017421           79 PVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI  150 (372)
Q Consensus        79 ~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  150 (372)
                      |.+..+++..++..     |..++.+   .+.++.+++|+...........+|...|..++.+.|...|++|+.|..+.+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence            33344445554442     3334433   677889999999999988999999999999999999999999999999999


Q ss_pred             EeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccE
Q 017421          151 YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI  230 (372)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  230 (372)
                      ||+.+++..++   +.+|.+.|..+.|+.+...+++|+.|..+++||.++....+++.+.+..              ..|
T Consensus        86 wDV~TGkv~Rr---~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--------------D~V  148 (307)
T KOG0316|consen   86 WDVNTGKVDRR---FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--------------DGV  148 (307)
T ss_pred             EEcccCeeeee---cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--------------Cce
Confidence            99999988777   7799999999999999999999999999999999988776665544332              368


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cC
Q 017421          231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TR  304 (372)
Q Consensus       231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~  304 (372)
                      .++..+  +..|++|+.||+++.||++.|+......+  .+|++++|+ ++++..+.++.|++|++.|-.+.      ++
T Consensus       149 ~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s-~d~nc~La~~l~stlrLlDk~tGklL~sYkG  223 (307)
T KOG0316|consen  149 SSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFS-KDGNCSLASSLDSTLRLLDKETGKLLKSYKG  223 (307)
T ss_pred             eEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEec-CCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence            888775  67899999999999999999987655544  589999999 99999999999999999998753      35


Q ss_pred             CCCCe--eEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          305 SINPC--NKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       305 ~~~~v--~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      |.+.-  ...+++....++++++      .|+.+.+||+...+.+..+.+|.
T Consensus       224 hkn~eykldc~l~qsdthV~sgS------EDG~Vy~wdLvd~~~~sk~~~~~  269 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQSDTHVFSGS------EDGKVYFWDLVDETQISKLSVVS  269 (307)
T ss_pred             cccceeeeeeeecccceeEEecc------CCceEEEEEeccceeeeeeccCC
Confidence            65543  3456677777888886      69999999999999998887774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.4e-25  Score=224.07  Aligned_cols=211  Identities=17%  Similarity=0.216  Sum_probs=170.0

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEE
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH  194 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  194 (372)
                      +..|.+.|.+++|+|+|++||+|+.|+.|+||++...    ...........+...+.+++|+| ++.+|++++.||.|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            4568999999999999999999999999999997542    11000001112234689999987 578999999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN  273 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  273 (372)
                      +||+.+++......                +|...|++++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..|.
T Consensus       559 lWd~~~~~~~~~~~----------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~  621 (793)
T PLN00181        559 VWDVARSQLVTEMK----------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC  621 (793)
T ss_pred             EEECCCCeEEEEec----------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence            99999876543332                5778999999997 7899999999999999999999888888754 6899


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc---
Q 017421          274 TVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL---  343 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~---  343 (372)
                      ++.|+++++.+|++|+.||.|++||++.       +.+|...|..+.|. ++.+|++++      .|++|++||+..   
T Consensus       622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s------~D~~ikiWd~~~~~~  694 (793)
T PLN00181        622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS------TDNTLKLWDLSMSIS  694 (793)
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE------CCCEEEEEeCCCCcc
Confidence            9999767899999999999999999973       23688899999997 567777765      689999999864   


Q ss_pred             ---ceEEEEEeeeE
Q 017421          344 ---LRTFYSFMVHI  354 (372)
Q Consensus       344 ---~~~~~~~~~h~  354 (372)
                         .+.+..+.+|.
T Consensus       695 ~~~~~~l~~~~gh~  708 (793)
T PLN00181        695 GINETPLHSFMGHT  708 (793)
T ss_pred             ccCCcceEEEcCCC
Confidence               35677777774

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.1e-27  Score=187.43  Aligned_cols=211  Identities=16%  Similarity=0.165  Sum_probs=173.3

Q ss_pred             CCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCC
Q 017421          123 TTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       123 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      -...+..++|+++ .+.+++++.||++++||+....  ..+...++|...|.++.|++ +++.+++++.|++|++|+...
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            4678999999995 5678889999999999965432  23344778999999999999 566788889999999999987


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  279 (372)
                      +.......                ||...|....|+|. .+++++++.|+.+++||++..-....+..|...+.|+.|+.
T Consensus       137 ~~Sv~Tf~----------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k  200 (311)
T KOG0277|consen  137 PNSVQTFN----------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK  200 (311)
T ss_pred             CcceEeec----------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence            77655543                68889999999994 68999999999999999987554455889999999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccc-eEEEEE
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLL-RTFYSF  350 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~-~~~~~~  350 (372)
                      -+.+.++||+.|+.|+.||++.+       .+|.-.|..++|||... .|++++      ||-++++||.... ..+...
T Consensus       201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas------YDmT~riw~~~~~ds~~e~~  274 (311)
T KOG0277|consen  201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS------YDMTVRIWDPERQDSAIETV  274 (311)
T ss_pred             cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc------ccceEEecccccchhhhhhh
Confidence            78899999999999999999854       37888999999999865 555666      9999999999844 344555


Q ss_pred             eeeEEEe
Q 017421          351 MVHILFS  357 (372)
Q Consensus       351 ~~h~~~~  357 (372)
                      .-|+.|.
T Consensus       275 ~~HtEFv  281 (311)
T KOG0277|consen  275 DHHTEFV  281 (311)
T ss_pred             hccceEE
Confidence            5666665

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=5.6e-27  Score=194.53  Aligned_cols=251  Identities=17%  Similarity=0.174  Sum_probs=212.8

Q ss_pred             ccCCCCcc---ccCCceeEeeeeeCCCCCc--------cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 017421           92 NYSGRGRF---SAADCCHMLSRYLPVNGPW--------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ  160 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  160 (372)
                      .|++++.+   .+.|..+.+|++..+.-..        .+.-+..+|.|++|+.|...+|+|+.||.|+||.+++|.+++
T Consensus       220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR  299 (508)
T KOG0275|consen  220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR  299 (508)
T ss_pred             eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence            57888876   5566677799988765332        234578999999999999999999999999999999998887


Q ss_pred             EeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC
Q 017421          161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR  240 (372)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  240 (372)
                      .+  ...|...|+++.|+.|+..+++++.|-++++--+++|++...++                ||++.|+...|.+||+
T Consensus       300 rF--drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----------------GHsSyvn~a~ft~dG~  361 (508)
T KOG0275|consen  300 RF--DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----------------GHSSYVNEATFTDDGH  361 (508)
T ss_pred             Hh--hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc----------------CccccccceEEcCCCC
Confidence            63  34777789999999999999999999999999999999865554                8999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCCCCee
Q 017421          241 ELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSINPCN  310 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~  310 (372)
                      ++++++.||+|++|+.++.+|+.+++.  ..-+|.++-.-|.+...++++...++|.|.++.        ..+...+...
T Consensus       362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi  441 (508)
T KOG0275|consen  362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFI  441 (508)
T ss_pred             eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceE
Confidence            999999999999999999999988874  345788888887888899999999999998875        2334556677


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee-EEEeeecccCCcc
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH-ILFSGYLHNDHNH  366 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h-~~~~~~~~~~~~~  366 (372)
                      +.+.+|.|.++++..      .|+.++.+.+.+|+..+.+.+| ....|--|+++-+
T Consensus       442 ~~~lSpkGewiYcig------ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN  492 (508)
T KOG0275|consen  442 NAILSPKGEWIYCIG------EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN  492 (508)
T ss_pred             EEEecCCCcEEEEEc------cCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence            888999999998775      6899999999999999999999 4455777766543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=5.1e-25  Score=193.45  Aligned_cols=244  Identities=16%  Similarity=0.146  Sum_probs=191.4

Q ss_pred             CccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421           97 GRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      ..+....+.+++..+........+..|..+++...|+|.|-++|+|...|+|+|||......+.+.. .....++|..++
T Consensus        32 ~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKne-f~v~aG~I~Di~  110 (603)
T KOG0318|consen   32 NILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNE-FQVLAGPIKDIS  110 (603)
T ss_pred             eEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeee-eeecccccccce
Confidence            3446666777777777777788889999999999999999999999999999999987754444322 334445899999


Q ss_pred             ECCCCCEEEEEeCC----CeEEEEECCCCc------eeeecc----------eeeccc--ccceecc-------CCCCcc
Q 017421          177 LSPDQRHLVYASMS----PIVHIVDVGSGT------MESLAN----------VTEIHD--GLDFSAA-------DDGGYS  227 (372)
Q Consensus       177 ~~~~~~~l~~~~~d----g~i~vwd~~~~~------~~~~~~----------~~~~~~--~~~~~~~-------~~~~h~  227 (372)
                      |++++++|+..+..    |.+.+||..+..      ...+..          .....+  .++|-..       ....|.
T Consensus       111 Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs  190 (603)
T KOG0318|consen  111 WDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS  190 (603)
T ss_pred             eCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc
Confidence            99999999887653    457788864311      111100          000000  0111111       124688


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---  301 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---  301 (372)
                      .-|+|+.|+|||.++++.+.||+|.+||-.+++.+..+.   +|.+.|.+++|+ ||+..|++++.|.+++|||+.+   
T Consensus       191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccce
Confidence            899999999999999999999999999999999999987   899999999999 9999999999999999999741   


Q ss_pred             ----------------------------------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeece
Q 017421          302 ----------------------------------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPN  335 (372)
Q Consensus       302 ----------------------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~  335 (372)
                                                                    ..+|...|+++..+|++++|++++      ||+.
T Consensus       270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs------yDG~  343 (603)
T KOG0318|consen  270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS------YDGH  343 (603)
T ss_pred             EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec------cCce
Confidence                                                          227889999999999999999998      9999


Q ss_pred             EEEeecccceEEE
Q 017421          336 ILLDNYFLLRTFY  348 (372)
Q Consensus       336 i~lw~~~~~~~~~  348 (372)
                      |.-|+..+|..-+
T Consensus       344 I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  344 INSWDSGSGTSDR  356 (603)
T ss_pred             EEEEecCCccccc
Confidence            9999998876543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.3e-26  Score=203.28  Aligned_cols=221  Identities=17%  Similarity=0.164  Sum_probs=189.7

Q ss_pred             eeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE
Q 017421          105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL  184 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  184 (372)
                      .+-+|+.....-...+.-..-+|++..|-+..+++++|+.|..|+||+.++++.+..   +..|...|.+++.+|...++
T Consensus        36 ~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~---FeAH~DyIR~iavHPt~P~v  112 (794)
T KOG0276|consen   36 DVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT---FEAHSDYIRSIAVHPTLPYV  112 (794)
T ss_pred             eeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE---eeccccceeeeeecCCCCeE
Confidence            446777776666666777788999999999999999999999999999999987776   77899999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEE
Q 017421          185 VYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLS  262 (372)
Q Consensus       185 ~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~  262 (372)
                      ++++.|-.|++||.+..-. .+.+.                ||...|.+++|+| |.+.+++++.|++|++|.+.+..+.
T Consensus       113 LtsSDDm~iKlW~we~~wa~~qtfe----------------GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n  176 (794)
T KOG0276|consen  113 LTSSDDMTIKLWDWENEWACEQTFE----------------GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN  176 (794)
T ss_pred             EecCCccEEEEeeccCceeeeeEEc----------------CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc
Confidence            9999999999999976532 22222                6888999999999 5689999999999999999999999


Q ss_pred             EEeecCCCCeEEEEEeC-CCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeece
Q 017421          263 LRILAHTSDVNTVCFGD-ESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPN  335 (372)
Q Consensus       263 ~~~~~~~~~v~~~~~sp-~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~  335 (372)
                      .++.+|...|+|+.|-+ +|..+|++|+.|.+|+|||..      ++.+|...|..+.|+|.-..+++|+      -|++
T Consensus       177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs------EDGT  250 (794)
T KOG0276|consen  177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS------EDGT  250 (794)
T ss_pred             eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec------CCcc
Confidence            99999999999999972 234599999999999999987      6779999999999999999999986      5778


Q ss_pred             EEEeecccceEEEEE
Q 017421          336 ILLDNYFLLRTFYSF  350 (372)
Q Consensus       336 i~lw~~~~~~~~~~~  350 (372)
                      +++|+..|-+....+
T Consensus       251 vriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  251 VRIWNSKTYKLEKTL  265 (794)
T ss_pred             EEEecCcceehhhhh
Confidence            888877766655444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=3.7e-27  Score=197.19  Aligned_cols=233  Identities=20%  Similarity=0.205  Sum_probs=192.4

Q ss_pred             ceeeeecccCc-----cCCCC-ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 017421           82 TVKMLAGREGN-----YSGRG-RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER  155 (372)
Q Consensus        82 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  155 (372)
                      ..+.|.||.+.     |.... ...++|.++++|++...+....+.+|...|..+.|+  ..++++++.|.++.|||+..
T Consensus       229 c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s  306 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS  306 (499)
T ss_pred             HHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence            45566666653     22222 227778899999999999999999999999999998  66899999999999999987


Q ss_pred             CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE
Q 017421          156 GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF  235 (372)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  235 (372)
                      ...+.....+.+|...|..+.|+  .+++++++.|.+|++|++.++.+.....                ||.-.|-|+.+
T Consensus       307 ps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~----------------gHkRGIAClQY  368 (499)
T KOG0281|consen  307 PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN----------------GHKRGIACLQY  368 (499)
T ss_pred             chHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh----------------cccccceehhc
Confidence            65444344567999999999995  5699999999999999999998876665                78889988886


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc--------------
Q 017421          236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL--------------  301 (372)
Q Consensus       236 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--------------  301 (372)
                      .  ++++++|+.|.+|++||+..|.+++.+.+|+.-|.|+.|.   .+.+++|+.||+|++||+.+              
T Consensus       369 r--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~  443 (499)
T KOG0281|consen  369 R--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR  443 (499)
T ss_pred             c--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHH
Confidence            4  8999999999999999999999999999999999999995   57899999999999999863              


Q ss_pred             -ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          302 -LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       302 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                       +..|.+.|..+.|..  ..+++++      .|.+|.+||+.++-+-
T Consensus       444 ~lv~hsgRVFrLQFD~--fqIvsss------HddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  444 TLVEHSGRVFRLQFDE--FQIISSS------HDDTILIWDFLNGPPS  482 (499)
T ss_pred             hhhhccceeEEEeecc--eEEEecc------CCCeEEEEEcCCCCcc
Confidence             236777888888854  3444443      6899999998877543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=6.5e-25  Score=177.70  Aligned_cols=210  Identities=16%  Similarity=0.204  Sum_probs=186.5

Q ss_pred             CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      +|..+.+|..+++-+.++.+|.+|++++.|.++.||-..+|+.+-.   ..+|.+.|+++..+.+.+++++|+.|.++++
T Consensus         2 rpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt---y~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    2 RPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT---YDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             CccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee---ecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            3567899999999999999999999999999999999888877776   7799999999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECC-------CCeEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLE-------ANKLSL  263 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~-------~~~~~~  263 (372)
                      ||+++|+++......                 .+|..+.|+++|++++..+++     +.|.++|++       ..++..
T Consensus        79 WDv~tGk~la~~k~~-----------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   79 WDVETGKQLATWKTN-----------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             EEcCCCcEEEEeecC-----------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence            999999987665532                 389999999999988876654     569999998       345678


Q ss_pred             EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421          264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI  336 (372)
Q Consensus       264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i  336 (372)
                      .+..+...++.+-|. |-++.|++|..||.|..||+++.       +.|...|+.++++||..++++++      -|.+-
T Consensus       142 kI~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s------~Dtta  214 (327)
T KOG0643|consen  142 KIPTPDSKITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS------KDTTA  214 (327)
T ss_pred             EecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc------cCccc
Confidence            888888999999999 99999999999999999999854       47888999999999999999986      68999


Q ss_pred             EEeecccceEEEEEee
Q 017421          337 LLDNYFLLRTFYSFMV  352 (372)
Q Consensus       337 ~lw~~~~~~~~~~~~~  352 (372)
                      ++||+.+...++.|..
T Consensus       215 kl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  215 KLVDVRTLEVLKTYTT  230 (327)
T ss_pred             eeeeccceeeEEEeee
Confidence            9999999998887743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=1.4e-24  Score=216.77  Aligned_cols=229  Identities=18%  Similarity=0.179  Sum_probs=180.5

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCC-------CCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQK  161 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~  161 (372)
                      |++.+.+   .+.+..+++|+.....       .+.....+...|.+++|+| ++.+|++++.||+|++||+.++..+..
T Consensus       491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~  570 (793)
T PLN00181        491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE  570 (793)
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            4555543   5566778888754211       1111223456899999987 578999999999999999998866554


Q ss_pred             eeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEc-CCC
Q 017421          162 DILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDG  239 (372)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-p~~  239 (372)
                         ..+|...|++++|+| ++.+|++|+.|+.|++||++++.......                 +...+.++.|+ +++
T Consensus       571 ---~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------------~~~~v~~v~~~~~~g  630 (793)
T PLN00181        571 ---MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------------TKANICCVQFPSESG  630 (793)
T ss_pred             ---ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------cCCCeEEEEEeCCCC
Confidence               567888999999997 78999999999999999999876543322                 11368899995 578


Q ss_pred             CEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------------cccCCC
Q 017421          240 RELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------------LLTRSI  306 (372)
Q Consensus       240 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------------~~~~~~  306 (372)
                      .+|++|+.|+.|++||+++.. .+..+.+|...|.++.|.  ++..|++++.|++|++||++            ++.+|.
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~  708 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT  708 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence            999999999999999998765 566778999999999996  67899999999999999986            234678


Q ss_pred             CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      ..+..++|+|++.+|++++      .|+.+++|+......+.+
T Consensus       709 ~~i~~v~~s~~~~~lasgs------~D~~v~iw~~~~~~~~~s  745 (793)
T PLN00181        709 NVKNFVGLSVSDGYIATGS------ETNEVFVYHKAFPMPVLS  745 (793)
T ss_pred             CCeeEEEEcCCCCEEEEEe------CCCEEEEEECCCCCceEE
Confidence            8889999999999999986      688888888766554433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=5.7e-26  Score=186.25  Aligned_cols=216  Identities=15%  Similarity=0.141  Sum_probs=174.8

Q ss_pred             EeeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe------------EEEEeeecccCCcceE
Q 017421          107 MLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVT  173 (372)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~  173 (372)
                      ++..+.-.+.......|.+.|+++.+.+ .|+++++|+.||.|.|||++...            ++.......+|+..|.
T Consensus        26 Ril~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is  105 (397)
T KOG4283|consen   26 RILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS  105 (397)
T ss_pred             hhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeee
Confidence            3344444555566678999999999988 78999999999999999998642            1111122456788999


Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CCEEEEEeCCC
Q 017421          174 DTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDD  249 (372)
Q Consensus       174 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~s~dg  249 (372)
                      ++.|.| |..++.+++.|.+++|||.++.+....++..                 ..|.+-+|+|-   ..++|+|..+-
T Consensus       106 s~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-----------------~~VYshamSp~a~sHcLiA~gtr~~  168 (397)
T KOG4283|consen  106 SAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-----------------GKVYSHAMSPMAMSHCLIAAGTRDV  168 (397)
T ss_pred             eeEEeeecCceeecccccceEEEeecccceeeEEeecC-----------------ceeehhhcChhhhcceEEEEecCCC
Confidence            999999 7778889999999999999988765554432                 36777788873   45788999999


Q ss_pred             eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---------------------cCCCCC
Q 017421          250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------------------TRSINP  308 (372)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------------------~~~~~~  308 (372)
                      .|++-|+.+|...+++.+|...|.++.|+|...-.|++|+.||.|++||++..                     ..|.+.
T Consensus       169 ~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk  248 (397)
T KOG4283|consen  169 QVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK  248 (397)
T ss_pred             cEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence            99999999999999999999999999999666667899999999999999721                     156778


Q ss_pred             eeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          309 CNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       309 v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |.+++|+.+|.++++..      -|..+++|+...|+
T Consensus       249 vngla~tSd~~~l~~~g------td~r~r~wn~~~G~  279 (397)
T KOG4283|consen  249 VNGLAWTSDARYLASCG------TDDRIRVWNMESGR  279 (397)
T ss_pred             eeeeeecccchhhhhcc------CccceEEeecccCc
Confidence            99999999999998774      48889999988775

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=7.4e-26  Score=191.34  Aligned_cols=245  Identities=16%  Similarity=0.198  Sum_probs=188.5

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeEEEEe-eecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~  175 (372)
                      ++-|...++|.. .+.....+.+|.++|.+++|....   ..|++++.|.++++|..+.+...... ....+|...|.++
T Consensus       121 gsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV  199 (423)
T KOG0313|consen  121 GSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV  199 (423)
T ss_pred             eecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence            334445555553 455677889999999988885433   45999999999999999887544332 2245899999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCceeeecceee---------cccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE---------IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       176 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      +..+++..+++|+.|..|++|+..+...........         ...+.....-...||..+|.++.|++ ...+++++
T Consensus       200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S  278 (423)
T KOG0313|consen  200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS  278 (423)
T ss_pred             EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence            999999999999999999999943222111110000         00000000011248999999999988 67899999


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---------ccCCCCCeeEEEeccC
Q 017421          247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---------LTRSINPCNKYLFNPC  317 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~v~~~~~s~~  317 (372)
                      .|.+|+.||+.++....++.+ .....|+.++ +..++|++|+.|..|++||.|+         +.+|.+.|.++.|+|.
T Consensus       279 wDHTIk~WDletg~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~  356 (423)
T KOG0313|consen  279 WDHTIKVWDLETGGLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT  356 (423)
T ss_pred             ccceEEEEEeecccceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence            999999999999998888774 4688999999 8999999999999999999983         4489999999999999


Q ss_pred             CCeEEEEeeeeEEEeeceEEEeecccce-EEEEEeee
Q 017421          318 NKYLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVH  353 (372)
Q Consensus       318 g~~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h  353 (372)
                      ..+++++     ..||++++|||+.+.+ +++...+|
T Consensus       357 ~~~~~~S-----~S~D~t~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  357 NEFQLVS-----GSYDNTVKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             CceEEEE-----EecCCeEEEEEeccCCCcceeeccC
Confidence            8776654     2289999999999998 89999888

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.6e-26  Score=193.17  Aligned_cols=220  Identities=19%  Similarity=0.240  Sum_probs=186.0

Q ss_pred             eCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC
Q 017421          112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  191 (372)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  191 (372)
                      .|.+....+..|...|+-+.||++|++||+++.|.+..||++.....+.-.....+|..+|..+.|+||.+++++++.+.
T Consensus       212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE  291 (519)
T ss_pred             CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence            45566678899999999999999999999999999999999877655544555778999999999999999999999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TS  270 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~  270 (372)
                      .+.+||..+|........               ++...+.+++|.|||..+++|+.|+++..||++. +....+.+- ..
T Consensus       292 ~~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~  355 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDP  355 (519)
T ss_pred             heeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccc
Confidence            999999999987554431               2446899999999999999999999999999984 334444432 24


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      .|.+++.+ +||+++++.+.|..|++++..+     +-....+|++++.|.+|+++++..      -+..+.+||+...+
T Consensus       356 ~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL------~~qei~LWDl~e~~  428 (519)
T KOG0293|consen  356 KVHDLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL------QDQEIHLWDLEENK  428 (519)
T ss_pred             eeEEEEEc-CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc------ccCeeEEeecchhh
Confidence            68999999 9999999999999999999863     335667999999999999987764      68999999999888


Q ss_pred             EEEEEeeeE
Q 017421          346 TFYSFMVHI  354 (372)
Q Consensus       346 ~~~~~~~h~  354 (372)
                      .++.|.||.
T Consensus       429 lv~kY~Ghk  437 (519)
T KOG0293|consen  429 LVRKYFGHK  437 (519)
T ss_pred             HHHHhhccc
Confidence            888888874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.9e-26  Score=208.40  Aligned_cols=194  Identities=19%  Similarity=0.226  Sum_probs=157.0

Q ss_pred             cc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe----------------------------E--E---------
Q 017421          120 VD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW----------------------------K--I---------  159 (372)
Q Consensus       120 ~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----------------------------~--~---------  159 (372)
                      +. .|.+.|+++.||+||++||+|+.|+.|+||.+...+                            .  +         
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            45 899999999999999999999999999999876500                            0  0         


Q ss_pred             ------------------EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421          160 ------------------QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA  221 (372)
Q Consensus       160 ------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                                        ..+..+.+|.+.|..+.|+.+ ++|++++.|.+|++|++....++..+.             
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-------------  407 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-------------  407 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-------------
Confidence                              001123488889999999964 589999999999999999998877775             


Q ss_pred             CCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          222 DDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       222 ~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                          |...|+|++|+| |.+||++|+-||.|+||++...+.+.-.. -..-|++++|. |+|+..+.|+.+|.+++|+..
T Consensus       408 ----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~-PdGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  408 ----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYS-PDGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             ----cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEec-cCCceEEEEEeccEEEEEEcc
Confidence                778999999999 67999999999999999999877654444 34789999999 889999999999999999987


Q ss_pred             ccc---------------CCCCCeeEEEeccCCC--eEEEEeeeeEEEeec
Q 017421          301 LLT---------------RSINPCNKYLFNPCNK--YLIIYLILVISIYSP  334 (372)
Q Consensus       301 ~~~---------------~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~d~  334 (372)
                      -++               .+. .|+++.|.|...  .|+++.|..|+|||+
T Consensus       482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            221               233 799999998644  777775444444443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.7e-25  Score=203.71  Aligned_cols=243  Identities=15%  Similarity=0.115  Sum_probs=195.4

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.|..+++|++........+.+|-..|+.+.|++.-.+|++++.|.+|+||+..+..++..   ..+|...|.|.+|+|
T Consensus        69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav---ltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV---LTGHNHYVMCAQFHP  145 (1202)
T ss_pred             cCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE---EecCceEEEeeccCC
Confidence            44456788999999999999999999999999999999999999999999999999988776   678888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecce--eeccccc-----------ceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANV--TEIHDGL-----------DFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      ....+++++.|-+|+|||+..-+.......  .....+.           ....+-..||.-.|+-++|+|.-.+|++|+
T Consensus       146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~  225 (1202)
T KOG0292|consen  146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA  225 (1202)
T ss_pred             ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence            999999999999999999975433222111  0000000           011111258999999999999999999999


Q ss_pred             CCCeEEEEECCCCe--EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCC
Q 017421          247 SDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCN  318 (372)
Q Consensus       247 ~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g  318 (372)
                      +|..|++|.+...+  .+.+..+|.+.|.++-|+ |..+++++.+.|++|+|||+.      +++.....-+.++-+|..
T Consensus       226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh-p~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l  304 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH-PHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL  304 (1202)
T ss_pred             CcceeeEEEeccccceeehhhhcccCCcceEEec-CccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence            99999999987554  456677999999999999 999999999999999999986      344556778899999999


Q ss_pred             CeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          319 KYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      ++++++.       |+-+.++.+..-++.+...+-
T Consensus       305 NLfAAgH-------DsGm~VFkleRErpa~~v~~n  332 (1202)
T KOG0292|consen  305 NLFAAGH-------DSGMIVFKLERERPAYAVNGN  332 (1202)
T ss_pred             ceeeeec-------CCceEEEEEcccCceEEEcCC
Confidence            9999994       666666666655555444433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.9e-25  Score=198.64  Aligned_cols=233  Identities=17%  Similarity=0.145  Sum_probs=195.7

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc-CCcceEEEEECCCCC
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQR  182 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~  182 (372)
                      ..+.+|.............+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..   ..+ |...|-+++|.  +.
T Consensus       197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---~~~~h~~rvg~laW~--~~  271 (484)
T KOG0305|consen  197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---LRGSHASRVGSLAWN--SS  271 (484)
T ss_pred             ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---ccCCcCceeEEEecc--Cc
Confidence            4566777766664444455589999999999999999999999999999988766655   334 88899999998  67


Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE
Q 017421          183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS  262 (372)
Q Consensus       183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  262 (372)
                      .+.+|+.++.|..+|++..+.....  .             .+|...|+.+.|++|++++|+|+.|+.+.|||....++.
T Consensus       272 ~lssGsr~~~I~~~dvR~~~~~~~~--~-------------~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  272 VLSSGSRDGKILNHDVRISQHVVST--L-------------QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             eEEEecCCCcEEEEEEecchhhhhh--h-------------hcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            8999999999999999987653321  1             168889999999999999999999999999999888899


Q ss_pred             EEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeece
Q 017421          263 LRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPN  335 (372)
Q Consensus       263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~  335 (372)
                      ..+..|...|.+++|+|-...+||+|+  .|+.|++||..+..     .....|.++.|++..+-|+++.+.    -++.
T Consensus       337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~----s~n~  412 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY----SENQ  412 (484)
T ss_pred             EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCC----CCCc
Confidence            999999999999999988899999986  69999999998544     456789999999999888877422    3578


Q ss_pred             EEEeecccceEEEEEeeeEEEeeec
Q 017421          336 ILLDNYFLLRTFYSFMVHILFSGYL  360 (372)
Q Consensus       336 i~lw~~~~~~~~~~~~~h~~~~~~~  360 (372)
                      |.||++.+.+.+..+.+|..=..||
T Consensus       413 i~lw~~ps~~~~~~l~gH~~RVl~l  437 (484)
T KOG0305|consen  413 ITLWKYPSMKLVAELLGHTSRVLYL  437 (484)
T ss_pred             EEEEeccccceeeeecCCcceeEEE
Confidence            9999999999999999997653333

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=5.6e-25  Score=186.09  Aligned_cols=216  Identities=16%  Similarity=0.156  Sum_probs=176.1

Q ss_pred             ccCCceeEeeeeeCCCCC----ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------------
Q 017421          100 SAADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------------------  156 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------  156 (372)
                      .+.|+.+++|.+.+....    .+-.||...|-+++..++|..+++|+.|..|+||+....                   
T Consensus       165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~  244 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE  244 (423)
T ss_pred             ecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence            677888999998876643    233599999999999999999999999999999993321                   


Q ss_pred             ---eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEE
Q 017421          157 ---WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL  233 (372)
Q Consensus       157 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  233 (372)
                         ........+.+|..+|.++.|++ ...+++++.|.+|++||+.++........                 ...++++
T Consensus       245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-----------------~ksl~~i  306 (423)
T KOG0313|consen  245 KEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-----------------NKSLNCI  306 (423)
T ss_pred             hcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-----------------CcceeEe
Confidence               00012345679999999999998 77899999999999999999987544332                 2379999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------cc
Q 017421          234 KFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LT  303 (372)
Q Consensus       234 ~~sp~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~  303 (372)
                      ..+|..++|++|+.|..+++||.+++.   ..+++.+|.+.|.++.|+|.+...|++|+.|+++++||+|+       +.
T Consensus       307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             ecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            999999999999999999999998764   56778899999999999988888999999999999999994       34


Q ss_pred             CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee
Q 017421          304 RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN  340 (372)
Q Consensus       304 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~  340 (372)
                      +|...|.++.|+..+ .+++|+      -|++|+++.
T Consensus       387 ~h~DKvl~vdW~~~~-~IvSGG------aD~~l~i~~  416 (423)
T KOG0313|consen  387 GHNDKVLSVDWNEGG-LIVSGG------ADNKLRIFK  416 (423)
T ss_pred             cCCceEEEEeccCCc-eEEecc------CcceEEEec
Confidence            889999999998754 555543      355555553

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=5.5e-25  Score=177.59  Aligned_cols=247  Identities=15%  Similarity=0.214  Sum_probs=184.7

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw  196 (372)
                      ..+++|...|.+++|+.+|..|++|+.|+++.||+++.. .........+|...|-.+.|+| ....+++++.|..|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            456789999999999999999999999999999999987 3344455678888899999998 66789999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCC------------------------CCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADD------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIY  252 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~  252 (372)
                      |++.+++..........-.+.++|...                        ......++.++|+-++.+++.....|+|.
T Consensus        93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            999999865554333222222222211                        12334556667766666666555567777


Q ss_pred             EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEe-
Q 017421          253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYL-  325 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~-  325 (372)
                      |.....-+++..+++|.....|+.|+ |+|++||+|+.|..+.+||+.      .+..+.-+|..+.|+.||++||+++ 
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             EEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence            77777777788889999999999999 999999999999999999986      4567889999999999999999986 


Q ss_pred             eeeEEEee--ceEEEeecccceEEEEEeee--EEEeeecccCCcc
Q 017421          326 ILVISIYS--PNILLDNYFLLRTFYSFMVH--ILFSGYLHNDHNH  366 (372)
Q Consensus       326 ~~~~~~~d--~~i~lw~~~~~~~~~~~~~h--~~~~~~~~~~~~~  366 (372)
                      |..|.|.+  .--++|++....+.++-.=|  ....-|-+.+++.
T Consensus       252 Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~  296 (313)
T KOG1407|consen  252 DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDG  296 (313)
T ss_pred             cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCC
Confidence            44555543  22367777766655554444  2333555555554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-24  Score=174.75  Aligned_cols=224  Identities=20%  Similarity=0.216  Sum_probs=180.3

Q ss_pred             CCCCcc-ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421           94 SGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV  172 (372)
Q Consensus        94 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  172 (372)
                      .++..| .+.|...-+|.....+..-...+|.+.|+|++.+.+.+++++|+.|.++++||+++|+.+...    ....+|
T Consensus        21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~V   96 (327)
T KOG0643|consen   21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW----KTNSPV   96 (327)
T ss_pred             CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe----ecCCee
Confidence            344445 445567779999999999999999999999999999999999999999999999999777653    334479


Q ss_pred             EEEEECCCCCEEEEEeC-----CCeEEEEECCCCceeeecc--eeecccccceeccCCCCccccEEEEEEcCCCCEEEEE
Q 017421          173 TDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLAN--VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  245 (372)
Q Consensus       173 ~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~  245 (372)
                      ..+.|+++|++++....     .+.|.++|++.........  .....           .+.+.++.+-|.|-+..|++|
T Consensus        97 k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----------t~~skit~a~Wg~l~~~ii~G  165 (327)
T KOG0643|consen   97 KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----------TPDSKITSALWGPLGETIIAG  165 (327)
T ss_pred             EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----------CCccceeeeeecccCCEEEEe
Confidence            99999999998887654     4689999998443110000  00000           133589999999999999999


Q ss_pred             eCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----------------------
Q 017421          246 SSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----------------------  301 (372)
Q Consensus       246 s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----------------------  301 (372)
                      ..||.|.+||+++++ .+.....|...|+.++++ ++..++++++.|.+-++||.++                       
T Consensus       166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d  244 (327)
T KOG0643|consen  166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD  244 (327)
T ss_pred             cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc
Confidence            999999999999985 445556799999999999 9999999999999999999751                       


Q ss_pred             --------------------------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          302 --------------------------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       302 --------------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                                                            .++|-++|++++|+|+|+..+++.      .|+.+++.
T Consensus       245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG------EDG~VR~h  314 (327)
T KOG0643|consen  245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG------EDGYVRLH  314 (327)
T ss_pred             eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC------CCceEEEE
Confidence                                                  226888999999999999998885      46666665

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=4.7e-25  Score=201.05  Aligned_cols=204  Identities=18%  Similarity=0.192  Sum_probs=172.7

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-----CeEEE--Ee--eecccCCcceEEEEECCCCCEEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQ--KD--ILAKSLRWTVTDTSLSPDQRHLVYA  187 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~~~--~~--~~~~~~~~~v~~~~~~~~~~~l~~~  187 (372)
                      ...++.|.+.|+.++.+||++.+++|+.|.+|++||+.-     +....  ..  ...-.....|.++.+|||+++|+++
T Consensus       447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs  526 (888)
T KOG0306|consen  447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS  526 (888)
T ss_pred             hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence            345578999999999999999999999999999999752     11101  00  0011223479999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421          188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      -.|.+++||-+++-+......                ||.-||.||..+||+++++||+.|.+|++|-++-|.|-..+.+
T Consensus       527 LLdnTVkVyflDtlKFflsLY----------------GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA  590 (888)
T KOG0306|consen  527 LLDNTVKVYFLDTLKFFLSLY----------------GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA  590 (888)
T ss_pred             eccCeEEEEEecceeeeeeec----------------ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence            999999999998876432222                7888999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      |...|.++.|. |...++++++.|+.|+-||-.      ++.+|...|++++.+|+|.++++++      .|.+|++|.-
T Consensus       591 HdDSvm~V~F~-P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s------hD~sIRlwE~  663 (888)
T KOG0306|consen  591 HDDSVMSVQFL-PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS------HDKSIRLWER  663 (888)
T ss_pred             ccCceeEEEEc-ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc------CCceeEeeec
Confidence            99999999999 889999999999999999865      5669999999999999999999886      5778888864


Q ss_pred             cc
Q 017421          342 FL  343 (372)
Q Consensus       342 ~~  343 (372)
                      ..
T Consensus       664 td  665 (888)
T KOG0306|consen  664 TD  665 (888)
T ss_pred             cC
Confidence            43

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.4e-24  Score=189.15  Aligned_cols=216  Identities=18%  Similarity=0.163  Sum_probs=174.2

Q ss_pred             eeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEE
Q 017421          108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVY  186 (372)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~  186 (372)
                      ++..........+......|++++|-.||++||+|...|.|+|||..+...++   ....|+.++..+.|+|+ +..+++
T Consensus        52 ly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t~l~s  128 (487)
T KOG0310|consen   52 LYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNTMLVS  128 (487)
T ss_pred             EEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCeEEEe
Confidence            33333334444466678899999999999999999999999999955432222   36789999999999994 556778


Q ss_pred             EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEE
Q 017421          187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN-KLSLR  264 (372)
Q Consensus       187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~-~~~~~  264 (372)
                      |+.|+.+++||+.+........                +|+..|.|.+|+|.. ..+++|+.||.|++||++.. ..+.+
T Consensus       129 ~sDd~v~k~~d~s~a~v~~~l~----------------~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e  192 (487)
T KOG0310|consen  129 GSDDKVVKYWDLSTAYVQAELS----------------GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE  192 (487)
T ss_pred             cCCCceEEEEEcCCcEEEEEec----------------CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence            8889999999999887411111                688899999999964 57899999999999999987 56666


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL  337 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~  337 (372)
                      +. |..+|..+.+- |.|..|++++ ...++|||+.+.       ..|...|+++++..++..|++++      -|+.++
T Consensus       193 ln-hg~pVe~vl~l-psgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s------LD~~VK  263 (487)
T KOG0310|consen  193 LN-HGCPVESVLAL-PSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS------LDRHVK  263 (487)
T ss_pred             ec-CCCceeeEEEc-CCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc------cccceE
Confidence            65 99999999999 8999999985 467999999732       25999999999999999998885      488888


Q ss_pred             EeecccceEEEEEe
Q 017421          338 LDNYFLLRTFYSFM  351 (372)
Q Consensus       338 lw~~~~~~~~~~~~  351 (372)
                      ++|+.+.+.+.++.
T Consensus       264 Vfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  264 VFDTTNYKVVHSWK  277 (487)
T ss_pred             EEEccceEEEEeee
Confidence            88888888887763

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=3.2e-24  Score=200.07  Aligned_cols=230  Identities=18%  Similarity=0.122  Sum_probs=193.1

Q ss_pred             ccCCceeEeeeeeCCCCCcc-ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          100 SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      .+.++.+.+|+......... +.+|.+.|+++++..-++++++|+.|.+++|||..++.+...   +.+|...+.++...
T Consensus       224 ~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~~  300 (537)
T KOG0274|consen  224 GSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTID  300 (537)
T ss_pred             cCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEcc
Confidence            44445566888887777766 899999999999988889999999999999999999988776   66888889888775


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                        ...+++|+.|.+|++|++.++....+..                +|..+|+++..+  +.++++|+.|++|++||+.+
T Consensus       301 --~~~~~sgs~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  301 --PFLLVSGSRDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             --CceEeeccCCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence              4568888999999999999988766654                578899999988  78999999999999999999


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      ++++..+.+|...|+++.+. +. ..+++|+.|++|++||+++.       ..|..-+..+.  ..+++|+++.      
T Consensus       361 ~~cl~sl~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~------  430 (537)
T KOG0274|consen  361 GKCLKSLSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSS------  430 (537)
T ss_pred             ceeeeeecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEecc------
Confidence            99999999999999999886 33 89999999999999999866       36666665554  4467787775      


Q ss_pred             eeceEEEeecccceEEEEEee-eEEEeeeccc
Q 017421          332 YSPNILLDNYFLLRTFYSFMV-HILFSGYLHN  362 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~~~~~~~-h~~~~~~~~~  362 (372)
                      .|++|++||+.+++.++.+.+ |....+.|+.
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~  462 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALAL  462 (537)
T ss_pred             ccccEEEeecccCceeeeeccCCcccEEEeec
Confidence            699999999999999999988 5433344443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=1.1e-24  Score=188.49  Aligned_cols=206  Identities=14%  Similarity=0.150  Sum_probs=168.3

Q ss_pred             ccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeE----EEEeeecccCCcceEEEEECC-CCCEEEEEeCCC
Q 017421          118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSP  191 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  191 (372)
                      .++.+|...-++++|++. .-.|++++.|++|++||+.....    +.......+|...|..++|++ +...|++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            368899998899999995 45688999999999999975433    445556789999999999999 667889999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-eEEEEeecCC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-KLSLRILAHT  269 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~  269 (372)
                      .+.|||++++ ........             .+|.++|+|++|+|- +..||+|+.|++|.+||+++- +++.++.+|.
T Consensus       251 ~L~iwD~R~~-~~~~~~~~-------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~  316 (422)
T KOG0264|consen  251 KLMIWDTRSN-TSKPSHSV-------------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE  316 (422)
T ss_pred             eEEEEEcCCC-CCCCcccc-------------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC
Confidence            9999999964 11111111             258889999999995 567799999999999999975 4788899999


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc--------------------ccCCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL--------------------LTRSINPCNKYLFNPCNKYLIIYLILVI  329 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~  329 (372)
                      ..|.+|.|+|.....|++++.|+.+.|||+..                    ..+|...|..+.|+|+..+++++..   
T Consensus       317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva---  393 (422)
T KOG0264|consen  317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA---  393 (422)
T ss_pred             cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec---
Confidence            99999999988889999999999999999962                    1278899999999999988776631   


Q ss_pred             EEeeceEEEeecc
Q 017421          330 SIYSPNILLDNYF  342 (372)
Q Consensus       330 ~~~d~~i~lw~~~  342 (372)
                        -|+.+.||+..
T Consensus       394 --eDN~LqIW~~s  404 (422)
T KOG0264|consen  394 --EDNILQIWQMA  404 (422)
T ss_pred             --CCceEEEeecc
Confidence              36777777654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=9.1e-24  Score=177.97  Aligned_cols=211  Identities=18%  Similarity=0.092  Sum_probs=181.2

Q ss_pred             CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      ....|..|+..|.+++.+|+.+++++|+.|....+|++.++.....   ..+|+..|+++.|+.+|.+|++|..+|.|+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e---ltgHKDSVt~~~FshdgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE---LTGHKDSVTCCSFSHDGTLLATGDMSGKVLV  132 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE---ecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence            3566889999999999999999999999999999999999974444   7799999999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      |+..++.......  .              .-..+.-+.|+|.+..|+.|+.||.+.+|.+.+....+.+.+|..++++=
T Consensus       133 ~~~stg~~~~~~~--~--------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G  196 (399)
T KOG0296|consen  133 FKVSTGGEQWKLD--Q--------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG  196 (399)
T ss_pred             EEcccCceEEEee--c--------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence            9999988644432  0              11368889999999999999999999999999977788999999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                      .|. |+|+.++++..||+|++|++.+..       ........+.++..+..+..+.      -++.+.+-+..+|+.+.
T Consensus       197 ~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~------~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  197 EFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN------SEGVACGVNNGSGKVVN  269 (399)
T ss_pred             ccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc------CCccEEEEccccceEEE
Confidence            999 889999999999999999998653       1233567788888888887775      47778888888888887


Q ss_pred             EEee
Q 017421          349 SFMV  352 (372)
Q Consensus       349 ~~~~  352 (372)
                      .+++
T Consensus       270 ~~n~  273 (399)
T KOG0296|consen  270 CNNG  273 (399)
T ss_pred             ecCC
Confidence            7774

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2.8e-25  Score=184.52  Aligned_cols=187  Identities=23%  Similarity=0.262  Sum_probs=157.5

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----eecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      +..+.+-|..|+|||++|++|+-||.|.||+..+|+....+     ..+--+..+|.|+.|+.|..++++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45778899999999999999999999999999887432211     1122445689999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      .+.+|.+...+.  .             .|+..|+|+.|+.|+..+++++.|.++++.-+++|+++..+.+|.+.|+...
T Consensus       291 ri~tG~ClRrFd--r-------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  291 RIETGQCLRRFD--R-------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             EEecchHHHHhh--h-------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            999999855443  1             4777999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCC-CeEEEE
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCN-KYLIIY  324 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g-~~l~~~  324 (372)
                      |+ ++|+.+++++.||+|++|+.++..        +...+|.++..-|.+ ..++++
T Consensus       356 ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  356 FT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             Ec-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence            99 999999999999999999987422        455677777776654 334444

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=1.6e-23  Score=195.13  Aligned_cols=209  Identities=13%  Similarity=0.070  Sum_probs=155.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE----------EeeecccCCcceEEEEECC-CCCEEEEEeCCCe
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----------KDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI  192 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  192 (372)
                      -..|.....++++..+++++.+.....|+...+..+.          ......+|.+.|.+++|+| ++++|++++.|+.
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            3445556666776666666666666677654442221          1123567889999999999 8899999999999


Q ss_pred             EEEEECCCCceeeec-ceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421          193 VHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       193 i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      |++||+.++...... ....          ...+|...|.+++|+|++ ++|++++.|++|+|||+++++.+..+..|..
T Consensus       100 IkIWdi~~~~~~~~~~~~l~----------~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~  169 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIV----------HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD  169 (493)
T ss_pred             EEEEecCCCccccccCcceE----------EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence            999999865421100 0000          012588899999999985 6899999999999999999999999999999


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCC-eeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINP-CNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      .|.+++|+ ++|.+|++++.|+.|++||+++.      ..|... +..+.|.+++..++++...  ...|++|++||+.+
T Consensus       170 ~V~sla~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~Dr~VklWDlr~  246 (493)
T PTZ00421        170 QITSLEWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS--KSQQRQIMLWDTRK  246 (493)
T ss_pred             ceEEEEEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecC--CCCCCeEEEEeCCC
Confidence            99999999 89999999999999999999843      345443 4567899988777654311  12368889998876


Q ss_pred             ce
Q 017421          344 LR  345 (372)
Q Consensus       344 ~~  345 (372)
                      ..
T Consensus       247 ~~  248 (493)
T PTZ00421        247 MA  248 (493)
T ss_pred             CC
Confidence            54

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.7e-24  Score=188.54  Aligned_cols=238  Identities=18%  Similarity=0.202  Sum_probs=172.9

Q ss_pred             ccCCceeEeeeeeCCCCC----ccc-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE---------Eeeec
Q 017421          100 SAADCCHMLSRYLPVNGP----WPV-DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ---------KDILA  165 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~  165 (372)
                      .+-|..+.+|++......    ..+ ......|++++|++.|..|++.+...+.+|+|-.......         .....
T Consensus       185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT  264 (641)
T KOG0772|consen  185 GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT  264 (641)
T ss_pred             ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence            445567778887654322    122 2346789999999999999988888899999966543222         23345


Q ss_pred             ccCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          166 KSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       166 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      ++|...+++..|+|+. ..+++++.||++++||+...+........          ...++..-+++.++|+|||++||+
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~----------k~~~g~Rv~~tsC~~nrdg~~iAa  334 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT----------KPAGGKRVPVTSCAWNRDGKLIAA  334 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee----------ccCCCcccCceeeecCCCcchhhh
Confidence            7899999999999954 56889999999999999876532222111          112245568999999999999999


Q ss_pred             EeCCCeEEEEECCCCe---EEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc---------CCCCCee
Q 017421          245 GSSDDCIYVYDLEANK---LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------RSINPCN  310 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~---~~~~~~~~~~--~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~v~  310 (372)
                      |..||.|.+|+.....   ....-.+|..  .|+||.|| ++|++|++-+.|+++++||++..+         ....+-+
T Consensus       335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t  413 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT  413 (641)
T ss_pred             cccCCceeeeecCCcccccceEeeeccCCCCceeEEEec-cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC
Confidence            9999999999986543   2223346877  99999999 999999999999999999998543         2345668


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                      .++|||+.++|++|+.-.-..-.+++.++|..+...++
T Consensus       414 dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~  451 (641)
T KOG0772|consen  414 DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY  451 (641)
T ss_pred             ccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence            99999999999988421111112455555555554444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.2e-23  Score=169.89  Aligned_cols=239  Identities=14%  Similarity=0.113  Sum_probs=185.2

Q ss_pred             ccccCCceeEeeeeeCCCCC--ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421           98 RFSAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  174 (372)
                      +..+.++...+|.+.+....  ....+|.+.|-.++|+| ..++|++++.|.+|++||...+++........+    -.-
T Consensus        36 asgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e----ni~  111 (313)
T KOG1407|consen   36 ASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE----NIN  111 (313)
T ss_pred             eecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc----ceE
Confidence            44666778888888876433  34578999999999988 568899999999999999999987776443332    446


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccccee--------ccC-----------------CCCcccc
Q 017421          175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS--------AAD-----------------DGGYSFG  229 (372)
Q Consensus       175 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------------~~~h~~~  229 (372)
                      +.|+|+|.+++.+..|..|...|.++.+.............+.+.        ...                 -..|...
T Consensus       112 i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn  191 (313)
T KOG1407|consen  112 ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN  191 (313)
T ss_pred             EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc
Confidence            899999999999999999999999877654333222111111111        111                 1468889


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----C
Q 017421          230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----R  304 (372)
Q Consensus       230 i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~  304 (372)
                      ..||.|+|+|++||+|+.|..+.+||++.--+++.+..+.-+|..+.|+ .+|++||+++.|..|-|=++++..     .
T Consensus       192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS-~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS-HDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec-cCcceeeccCccceEEeEecccCCeEEEee
Confidence            9999999999999999999999999999999999999999999999999 999999999999999888887654     5


Q ss_pred             CCCCeeEEEeccCCCeEEEEeeeeEE---EeeceEEEeec
Q 017421          305 SINPCNKYLFNPCNKYLIIYLILVIS---IYSPNILLDNY  341 (372)
Q Consensus       305 ~~~~v~~~~~s~~g~~l~~~~~~~~~---~~d~~i~lw~~  341 (372)
                      +.++...++|+|...+||-+.+..-.   .--++++++-+
T Consensus       271 ~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  271 CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence            77889999999998888866433221   11155666543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1e-24  Score=191.20  Aligned_cols=224  Identities=13%  Similarity=0.136  Sum_probs=172.5

Q ss_pred             eeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEeeecccCCcceEEEEECCCCCEE
Q 017421          109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHL  184 (372)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l  184 (372)
                      ....|......+.+|+..|.++++.|.|-.|++|+.|-.|++||+.....    ...+.....  ..|.+++|++.+..|
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~i  229 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQI  229 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeE
Confidence            44567777788899999999999999999999999999999999986421    112112223  369999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EE
Q 017421          185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LS  262 (372)
Q Consensus       185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~  262 (372)
                      ++.+...+.+|+|-.........+-....    ......+||...++|-+|+|+. ..+++++.||++++||+...+ .+
T Consensus       230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYI----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             EEEecCcceeEEccCCceeeeeeccchhh----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            99999999999997755432222110000    1112235899999999999976 578899999999999997654 23


Q ss_pred             EEee-----cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---------cCCCC--CeeEEEeccCCCeEEEEee
Q 017421          263 LRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------TRSIN--PCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       263 ~~~~-----~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------~~~~~--~v~~~~~s~~g~~l~~~~~  326 (372)
                      ..+.     +..-+++.++|+ ++|++||+|+.||+|.+|+.+..         +.|..  .|+++.||+||++|++-+ 
T Consensus       306 qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-  383 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG-  383 (641)
T ss_pred             eEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc-
Confidence            3332     233478999999 99999999999999999997622         25655  899999999999999765 


Q ss_pred             eeEEEeeceEEEeecccce
Q 017421          327 LVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~~~~  345 (372)
                           +|.+++|||+...+
T Consensus       384 -----~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  384 -----FDDTLKVWDLRQFK  397 (641)
T ss_pred             -----CCCceeeeeccccc
Confidence                 79999999987655

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.1e-24  Score=180.87  Aligned_cols=258  Identities=14%  Similarity=0.126  Sum_probs=205.4

Q ss_pred             CCCCCccccceeeeecccC-----ccCCCCcc---ccCCceeEeeeeeCCCC---CccccCCCCceEEEEECCCCCEEEE
Q 017421           73 PGKRHLPVSTVKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVA  141 (372)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~  141 (372)
                      -.+...|....+++..|..     .|++.|.+   .+.|++.++|...+...   ...+.+|..+|..+.||||.++|++
T Consensus       207 c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla  286 (519)
T KOG0293|consen  207 CGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA  286 (519)
T ss_pred             cCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence            3455566666777777766     47888876   67778899999988777   6778899999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421          142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA  221 (372)
Q Consensus       142 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                      ++.+..+.+||+.++.......  .++...+.+++|.|||..+++|+.|+.+..||++..... .   .+..        
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~-~---W~gv--------  352 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG-N---WEGV--------  352 (519)
T ss_pred             cCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh-c---cccc--------
Confidence            9999999999999997655432  234567999999999999999999999999999865421 1   1110        


Q ss_pred             CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       222 ~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                          ....|.+++..+||+++++.+.|..|++++..+......+. ...+|++++.| .+++++++.-.+..+++||+..
T Consensus       353 ----r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  353 ----RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             ----ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEc-CCCcEEEEEcccCeeEEeecch
Confidence                11269999999999999999999999999998876654444 44789999999 9999999999999999999972


Q ss_pred             ------ccCCCCC--eeEEEecc-CCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEEE
Q 017421          302 ------LTRSINP--CNKYLFNP-CNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILF  356 (372)
Q Consensus       302 ------~~~~~~~--v~~~~~s~-~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~~  356 (372)
                            ..+|...  +..-+|-- +..++++|+      .|+.|++|+-.+|+.+-.+.||...
T Consensus       427 ~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS------ED~kvyIWhr~sgkll~~LsGHs~~  484 (519)
T KOG0293|consen  427 NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS------EDSKVYIWHRISGKLLAVLSGHSKT  484 (519)
T ss_pred             hhHHHHhhcccccceEEEeccCCCCcceEEecC------CCceEEEEEccCCceeEeecCCcce
Confidence                  2244432  33335543 347788886      6999999999999999999999743

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=193.63  Aligned_cols=199  Identities=15%  Similarity=0.135  Sum_probs=161.6

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd  197 (372)
                      .+.+|.+.|..+.||.++ +|++++.|.+|++|++....++..    -.|...|+|++|+| |.++|++|+.||.|+||+
T Consensus       364 ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~----F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs  438 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKV----FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS  438 (712)
T ss_pred             hhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeE----EecCCeeEEEEecccCCCcEeecccccceEEee
Confidence            468999999999999755 789999999999999998877764    35777899999999 899999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee--cC------C
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AH------T  269 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~------~  269 (372)
                      +...++..-..+.                 .-|++++|.|||++.+.|+.+|.+++|+....+......  .|      .
T Consensus       439 I~d~~Vv~W~Dl~-----------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  439 ISDKKVVDWNDLR-----------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             cCcCeeEeehhhh-----------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            9877653322221                 379999999999999999999999999998776554432  11      2


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccC--CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTR--SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      ..|+.+.|.|.+...+++.+.|..|||||.+      .+++  ....-....|+.||++|++++      -|..|++|++
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s------eDs~VYiW~~  575 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS------EDSWVYIWKN  575 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee------cCceEEEEeC
Confidence            3799999997777778888899999999995      2232  233446779999999999996      5899999998


Q ss_pred             ccce
Q 017421          342 FLLR  345 (372)
Q Consensus       342 ~~~~  345 (372)
                      ....
T Consensus       576 ~~~~  579 (712)
T KOG0283|consen  576 DSFN  579 (712)
T ss_pred             CCCc
Confidence            5444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.8e-24  Score=187.29  Aligned_cols=197  Identities=17%  Similarity=0.164  Sum_probs=160.3

Q ss_pred             CCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          122 QTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      .....|.+++|+|...+ +|+.+. -.+.||+..+......   ....+..+.++.|..||+++++|...|.|+++|+.+
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~---~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~   99 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT---FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS   99 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh---HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence            34578999999996654 454443 5799999876544333   334445799999999999999999999999999766


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  279 (372)
                      ........                +|+.++..+.|+|++ ..+++|++|+.+++||+.+......+.+|+..|.|.+|+|
T Consensus       100 r~iLR~~~----------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~  163 (487)
T KOG0310|consen  100 RVILRQLY----------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP  163 (487)
T ss_pred             HHHHHHHh----------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc
Confidence            43333222                588899999999965 5678889999999999999988778899999999999998


Q ss_pred             CCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      .+++++++|+.||+|++||+++..      .|..+|.++.+-|.|..+++++       -+.+++||+.+|.
T Consensus       164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~  228 (487)
T KOG0310|consen  164 ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGG  228 (487)
T ss_pred             CCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCc
Confidence            889999999999999999999662      7899999999999999999986       4566777777544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2e-23  Score=180.82  Aligned_cols=196  Identities=16%  Similarity=0.143  Sum_probs=168.3

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      ..|...+.+++.++||++||+|+.|..|.||+.++.+.+..   +.+|.+.|.+++|-.....+++++.|+.|++|+++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~---~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV---FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc---ccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            37889999999999999999999999999999999866665   789999999999999889999999999999999987


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      ........                ||+..|..|.-..-++.+-+|+.|+++++|++... ....+.+|.+.+.|++|-  
T Consensus       276 ~s~vetly----------------GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I--  336 (479)
T KOG0299|consen  276 LSYVETLY----------------GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI--  336 (479)
T ss_pred             hHHHHHHh----------------CCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe--
Confidence            65433332                78889999988877887778889999999999543 335667899999999996  


Q ss_pred             CCCEEEEEeCCCeEEEEeccccc------------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          281 SGHLIYSGSDDNLCKVNSVLLLT------------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       281 ~~~~l~s~~~dg~i~vwd~~~~~------------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +...|++|+.+|.|.+|++.+.+                  .+..+|++++..|...++++++      |+++++||.+.
T Consensus       337 n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS------~~G~vrLW~i~  410 (479)
T KOG0299|consen  337 NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS------WSGCVRLWKIE  410 (479)
T ss_pred             cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC------CCCceEEEEec
Confidence            77889999999999999985211                  1224899999999999999998      99999999998


Q ss_pred             cc
Q 017421          343 LL  344 (372)
Q Consensus       343 ~~  344 (372)
                      .+
T Consensus       411 ~g  412 (479)
T KOG0299|consen  411 DG  412 (479)
T ss_pred             CC
Confidence            87

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=1.8e-24  Score=173.65  Aligned_cols=219  Identities=15%  Similarity=0.117  Sum_probs=182.5

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .++|=..++|+-......+.+ .|...|.+++|+.|.++|++|+.+..++|||++..+...  ....+|.+.|..+.|..
T Consensus        77 aaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App--~E~~ghtg~Ir~v~wc~  153 (334)
T KOG0278|consen   77 AAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP--KEISGHTGGIRTVLWCH  153 (334)
T ss_pred             hcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc--hhhcCCCCcceeEEEec
Confidence            334445567777776655544 578899999999999999999999999999998764332  23668888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      ..+.|++++.|+.|++||.+++.........                 .+|+++..+++|++|.++. .+.|..||..+.
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-----------------s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf  215 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFN-----------------SPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF  215 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEecC-----------------CCCcceeeccCCCEEEEec-CceeEEeccccc
Confidence            9999999999999999999999876555432                 3899999999998766554 678999999998


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      ..+..+. ....|.+...+ |+...++.|+.|..++.||..+.       ++|.++|.++.|+|+|...++++      .
T Consensus       216 ~~lKs~k-~P~nV~SASL~-P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS------E  287 (334)
T KOG0278|consen  216 GLLKSYK-MPCNVESASLH-PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS------E  287 (334)
T ss_pred             cceeecc-Ccccccccccc-CCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC------C
Confidence            8877766 45788999999 77799999999999999998743       58899999999999999999987      6


Q ss_pred             eceEEEeecccceEE
Q 017421          333 SPNILLDNYFLLRTF  347 (372)
Q Consensus       333 d~~i~lw~~~~~~~~  347 (372)
                      |++|+||....++..
T Consensus       288 DGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  288 DGTIRLWQTTPGKTY  302 (334)
T ss_pred             CceEEEEEecCCCch
Confidence            999999998877754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.2e-23  Score=166.90  Aligned_cols=225  Identities=15%  Similarity=0.149  Sum_probs=179.2

Q ss_pred             ccccCCceeEeeeeeCCCC---CccccCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421           98 RFSAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV  172 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  172 (372)
                      ...++|+.+++....+...   ...+.+|.++|+-++|..  -|.+||++++||.|.||.-+++ ...+......|...|
T Consensus        27 ATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SV  105 (299)
T KOG1332|consen   27 ATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASV  105 (299)
T ss_pred             eeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccc
Confidence            4467788888887776654   456799999999999965  8999999999999999998877 444445566888899


Q ss_pred             EEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---C--------
Q 017421          173 TDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---G--------  239 (372)
Q Consensus       173 ~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~--------  239 (372)
                      .+++|.|  -|-.|++++.||.|.|.+++....-.......             .|...|++++|.|-   |        
T Consensus       106 NsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~-------------aH~~GvnsVswapa~~~g~~~~~~~~  172 (299)
T KOG1332|consen  106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF-------------AHEIGVNSVSWAPASAPGSLVDQGPA  172 (299)
T ss_pred             eeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh-------------ccccccceeeecCcCCCccccccCcc
Confidence            9999999  46789999999999999987652211222222             36678999999985   4        


Q ss_pred             ---CEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEEeCCCC---CEEEEEeCCCeEEEEecc---------cc
Q 017421          240 ---RELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVNSVL---------LL  302 (372)
Q Consensus       240 ---~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~---~~l~s~~~dg~i~vwd~~---------~~  302 (372)
                         +.|++|+.|..|+||+..+++  .-.++.+|.+.|..++|.|..|   ..|++++.||++.||-.+         .+
T Consensus       173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll  252 (299)
T KOG1332|consen  173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL  252 (299)
T ss_pred             cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc
Confidence               569999999999999998764  3455789999999999996553   589999999999999876         23


Q ss_pred             cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          303 TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       303 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +.....++.+.||+.|..|+++.      =|+.+.+|.-.
T Consensus       253 ~~f~~~~w~vSWS~sGn~LaVs~------GdNkvtlwke~  286 (299)
T KOG1332|consen  253 EEFPDVVWRVSWSLSGNILAVSG------GDNKVTLWKEN  286 (299)
T ss_pred             ccCCcceEEEEEeccccEEEEec------CCcEEEEEEeC
Confidence            35667899999999999999874      27788888643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=2e-23  Score=172.50  Aligned_cols=194  Identities=19%  Similarity=0.241  Sum_probs=156.1

Q ss_pred             ccCCCCcc---ccCCceeEeeeee------------CCC------CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEE
Q 017421           92 NYSGRGRF---SAADCCHMLSRYL------------PVN------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI  150 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~------------~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  150 (372)
                      .|+++|.+   .++|..+++.+..            ++.      ..+.+..|...|+++.|+|....|++|+.|++|++
T Consensus       119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl  198 (430)
T KOG0640|consen  119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL  198 (430)
T ss_pred             eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence            57777766   6666666665544            110      12346789999999999999999999999999999


Q ss_pred             EeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccE
Q 017421          151 YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI  230 (372)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  230 (372)
                      ||+...........+ ....+|.++.|+|.|.+|+.|.....+++||+++-++-...+             ++.+|+..|
T Consensus       199 FDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-------------Pd~qht~ai  264 (430)
T KOG0640|consen  199 FDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-------------PDDQHTGAI  264 (430)
T ss_pred             EecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-------------cccccccce
Confidence            999764222221111 223479999999999999999999999999999987643332             234688899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCC-CeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTS-DVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +++.+++.+++.++++.||.|++||--+++|+.++. +|.+ .|.+..|. .+|+++++.+.|..+++|.+.
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeec
Confidence            999999999999999999999999999999988875 5654 78889999 999999999999999999985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=7.7e-23  Score=186.71  Aligned_cols=233  Identities=16%  Similarity=0.170  Sum_probs=193.2

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      +++...+++|+....+..+.+..  +.+.+..|-|.++++++|...|.+.+||+.....+..   ...|.+.|++++.+|
T Consensus       390 Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et---i~AHdgaIWsi~~~p  464 (888)
T KOG0306|consen  390 SGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET---IRAHDGAIWSISLSP  464 (888)
T ss_pred             ecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh---hhccccceeeeeecC
Confidence            56667888888877766555543  3889999999999999999999999999998766554   558899999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCc-----eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGT-----MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  254 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iw  254 (372)
                      |++.+++|+.|.+|++||+.--.     ......+  .+.. ..      .-...|.|+.+||||++|+++=.|.+|+||
T Consensus       465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl--~~~r-tL------el~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL--KHTR-TL------ELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             CCCceEEecCCcEEEEEeEEEEeccCcccceeeee--ccce-EE------eccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            99999999999999999974211     1010000  0000 00      123489999999999999999999999999


Q ss_pred             ECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeee
Q 017421          255 DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILV  328 (372)
Q Consensus       255 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~  328 (372)
                      -+++-+....+.+|.-||.|+..+ ||+++++|||.|.+|++|-+.      ++..|...|.++.|-|....+.+++   
T Consensus       536 flDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g---  611 (888)
T KOG0306|consen  536 FLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG---  611 (888)
T ss_pred             EecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec---
Confidence            999999999999999999999999 999999999999999999987      4558899999999999888777775   


Q ss_pred             EEEeeceEEEeecccceEEEEEeee
Q 017421          329 ISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       329 ~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                         -|+.++-||...-..++.+.+|
T Consensus       612 ---KD~kvKqWDg~kFe~iq~L~~H  633 (888)
T KOG0306|consen  612 ---KDGKVKQWDGEKFEEIQKLDGH  633 (888)
T ss_pred             ---CcceEEeechhhhhhheeeccc
Confidence               5888999998888888888888

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=8.5e-23  Score=193.76  Aligned_cols=204  Identities=18%  Similarity=0.196  Sum_probs=167.6

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC---C------------eEEEEeeecccCCcceEEEEECCCCCE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---G------------WKIQKDILAKSLRWTVTDTSLSPDQRH  183 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (372)
                      ....|.+.|+|+.|+|||++||+|+.|+.|.||+...   +            +.......+.+|...|..+.|+|++.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            4567999999999999999999999999999999873   0            122234456789999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 017421          184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL  263 (372)
Q Consensus       184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  263 (372)
                      +++++.|+.|.+|+..+.+......                +|.+.|-.+.|.|-|++||+-+.|++|++|++.+....+
T Consensus       144 lvS~s~DnsViiwn~~tF~~~~vl~----------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k  207 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFELLKVLR----------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK  207 (942)
T ss_pred             EEEecccceEEEEccccceeeeeee----------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence            9999999999999999986555444                688899999999999999999999999999865532211


Q ss_pred             ----------------------------------------------------EeecCCCCeEEEEEeCC-----C-----
Q 017421          264 ----------------------------------------------------RILAHTSDVNTVCFGDE-----S-----  281 (372)
Q Consensus       264 ----------------------------------------------------~~~~~~~~v~~~~~sp~-----~-----  281 (372)
                                                                          .+-+|..++.+++|+|.     .     
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~  287 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTS  287 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCc
Confidence                                                                14478999999999951     1     


Q ss_pred             --CC----EEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          282 --GH----LIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       282 --~~----~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                        ++    .+|+|+.|++|.||.....+       -....|..++|+|||..|++++      +|++|.+..+...
T Consensus       288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS------~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS------LDGTVALIHFEEK  357 (942)
T ss_pred             cCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe------cCCeEEEEEcchH
Confidence              11    67899999999999986433       3567899999999999988886      7999998877653

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=2.8e-22  Score=187.81  Aligned_cols=194  Identities=11%  Similarity=0.058  Sum_probs=142.4

Q ss_pred             EeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceec
Q 017421          142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA  220 (372)
Q Consensus       142 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      |+.++.|++|+......+.   ...+|...|.+++|+|+ +.+|++|+.|+.|++||+.++...... .....  ..   
T Consensus        50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i~~p~--~~---  120 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-IKDPQ--CI---  120 (568)
T ss_pred             CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-cccce--EE---
Confidence            5567889999987654333   36789999999999996 789999999999999999865321000 00000  00   


Q ss_pred             cCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          221 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       221 ~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                        ..+|...|.+++|+|++.. |++++.|++|++||+++++....+. |...|.+++|+ ++|.+|++++.|+.|+|||+
T Consensus       121 --L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        121 --LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             --eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence              0257789999999999875 4788999999999999998777775 66789999999 99999999999999999999


Q ss_pred             ccc------cCCCCCeeE-----EEeccCCCeEEEEeeeeEEEeeceEEEeeccc-ceEEEEE
Q 017421          300 LLL------TRSINPCNK-----YLFNPCNKYLIIYLILVISIYSPNILLDNYFL-LRTFYSF  350 (372)
Q Consensus       300 ~~~------~~~~~~v~~-----~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~-~~~~~~~  350 (372)
                      ++.      ..|...+..     ..|++++.+|++++...  ..+++|+|||+.. ++++..+
T Consensus       197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~--~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK--NNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC--CCccEEEEEECCCCCCceEEE
Confidence            843      356655433     34568888888764110  0124788999885 4444443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.5e-25  Score=198.61  Aligned_cols=198  Identities=20%  Similarity=0.241  Sum_probs=175.6

Q ss_pred             eeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421          108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA  187 (372)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  187 (372)
                      +|..-.......+.+|..+|.++.|+++..+|++|+.+|+|++||++....++.   +.+|...+.++.|+|-+.+.+.|
T Consensus        54 L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt---Ltgh~~~~~sv~f~P~~~~~a~g  130 (825)
T KOG0267|consen   54 LWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT---LTGHLLNITSVDFHPYGEFFASG  130 (825)
T ss_pred             cccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh---hhccccCcceeeeccceEEeccc
Confidence            555555555556899999999999999999999999999999999998866664   67888899999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421          188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      +.|+.+++||++...+.....                +|...+.++.|+|+|+++++|+.|.+++|||+..|+.+..+..
T Consensus       131 Stdtd~~iwD~Rk~Gc~~~~~----------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~  194 (825)
T KOG0267|consen  131 STDTDLKIWDIRKKGCSHTYK----------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS  194 (825)
T ss_pred             cccccceehhhhccCceeeec----------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence            999999999999766644443                5777899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEe
Q 017421          268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      |++.+..+.|+ |..-++++|+.|+++++||++++      +.....|.+.+|+|+++.++++.
T Consensus       195 ~e~~v~sle~h-p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  195 HEGKVQSLEFH-PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ccccccccccC-chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence            99999999999 88889999999999999999954      35678899999999999988874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-22  Score=160.06  Aligned_cols=205  Identities=15%  Similarity=0.191  Sum_probs=156.6

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--Eeeecc-------------------------------
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ--KDILAK-------------------------------  166 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~-------------------------------  166 (372)
                      -..|.+.|+|.+|+|+|.+|++|+.|.+|++..++...+..  ....+.                               
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            36789999999999999999999999999998765421110  001111                               


Q ss_pred             ----------------cCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccE
Q 017421          167 ----------------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI  230 (372)
Q Consensus       167 ----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  230 (372)
                                      +|.+-|.++ ++-++-++++|+.|.+|++||++-..+...........+         -..+.|
T Consensus       165 iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g---------lessav  234 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG---------LESSAV  234 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC---------ccccee
Confidence                            333333332 233466788888899999999987776544332211111         134689


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc----------
Q 017421          231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL----------  300 (372)
Q Consensus       231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~----------  300 (372)
                      ..++..|.|++|++|..|....+||++.++.++.+..|...|.|+.|+ |...++++++.|..|++-|+.          
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs-p~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS-PGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-CCceEEEEecccceEEEeecccchhhcCceE
Confidence            999999999999999999999999999999999999999999999999 999999999999999999986          


Q ss_pred             cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          301 LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       301 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      ....|...+..+.|+|..-.+++.+      .|.+..||-+
T Consensus       314 vv~ehkdk~i~~rwh~~d~sfisss------adkt~tlwa~  348 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDFSFISSS------ADKTATLWAL  348 (350)
T ss_pred             EEEeccCceEEEEecCccceeeecc------CcceEEEecc
Confidence            1237888889999999876555443      4777888854

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=9.1e-24  Score=180.55  Aligned_cols=223  Identities=13%  Similarity=0.107  Sum_probs=187.7

Q ss_pred             ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+.|+.+.+|+..+..  ....+.+-.++|+.++|.++++++++++.|+.+++|++...+....   +.+|...|+++.|
T Consensus       193 gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~T---LsGHtdkVt~ak~  269 (459)
T KOG0288|consen  193 GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHT---LSGHTDKVTAAKF  269 (459)
T ss_pred             cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhh---hcccccceeeehh
Confidence            6777888899998877  4556778889999999999999999999999999999998866555   6689999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      ......+++|+.|.+|++||+....+.......                 ..+..|..+  ...+++|..|+.|++||++
T Consensus       270 ~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-----------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~R  330 (459)
T KOG0288|consen  270 KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-----------------SQCNDIVCS--ISDVISGHFDKKVRFWDIR  330 (459)
T ss_pred             hccccceeeccccchhhhhhhhhhheecccccc-----------------ccccceEec--ceeeeecccccceEEEecc
Confidence            988777999999999999999987764433321                 245555555  4568899999999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeee
Q 017421          258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      +..+......+. .|+++..+ .+|..+.+++.|.++.+.|+++..          ......+.+.|||++.|+++|+  
T Consensus       331 s~~~~~sv~~gg-~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS--  406 (459)
T KOG0288|consen  331 SADKTRSVPLGG-RVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS--  406 (459)
T ss_pred             CCceeeEeecCc-ceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc--
Confidence            999998888765 99999999 999999999999999999998533          1223478999999999999997  


Q ss_pred             eEEEeeceEEEeecccceEEEEEee
Q 017421          328 VISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                          .|+.++||++.+++..+.+..
T Consensus       407 ----~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  407 ----ADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             ----CCCcEEEEEccCceEEEEecc
Confidence                699999999999998776543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=168.77  Aligned_cols=242  Identities=17%  Similarity=0.153  Sum_probs=196.9

Q ss_pred             cceeeeecccCcc--------CCCCccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421           81 STVKMLAGREGNY--------SGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD  152 (372)
Q Consensus        81 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  152 (372)
                      ...+.+.||..++        .+.....++|....+|.+..........+|.+.|+++.|++.+.++++++.|++..||.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            3455666776643        23334577888999999999999999999999999999999999999999999999997


Q ss_pred             C------CCC-------------------------------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          153 V------ERG-------------------------------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       153 ~------~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      .      ...                               .....+..+.+|...|.+..|...++.+++++.|.+..+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence            2      110                               001122345688889999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT  274 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  274 (372)
                      ||++++.......                ||....+.++-+|..+++++++.|.+.++||.+.. ..+..+.+|...|++
T Consensus       299 wDVEtge~v~~Lt----------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  299 WDVETGEVVNILT----------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             eeeccCceecccc----------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence            9999998765554                78889999999999999999999999999999843 456778899999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +.|.  .+..+++|+.|.+|++||++.+.      ...++++.++.+..+..|+.-.      -+.+|+|+|+.-.+.
T Consensus       363 ~vF~--~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh------DNRqvRlfDlnG~Rl  432 (481)
T KOG0300|consen  363 VVFN--TDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH------DNRQVRLFDLNGNRL  432 (481)
T ss_pred             EEEe--cCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc------CCceEEEEecCCCcc
Confidence            9997  56679999999999999998655      3456788888888887887774      246788888765543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.6e-23  Score=184.56  Aligned_cols=218  Identities=15%  Similarity=0.102  Sum_probs=180.1

Q ss_pred             ccCCceeEeeeeeCCCCCccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      ...+..+.+|+.........+.+ |...|-+++|+  +..+.+|+.++.|..+|+...+....  ...+|...|..++|+
T Consensus       235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWS  310 (484)
T ss_pred             eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEEC
Confidence            55566777888888888888888 99999999999  77799999999999999987755444  367888899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEe--CCCeEEEEE
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS--SDDCIYVYD  255 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s--~dg~i~iwd  255 (372)
                      +|++++++|+.|+.+.|||...........                .|.+.|..++|+|- ..+||+|+  .|++|++||
T Consensus       311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~----------------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFT----------------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             CCCCeeccCCCccceEeccCCCccccEEEe----------------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            999999999999999999995544322222                48889999999994 56788764  589999999


Q ss_pred             CCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE-e-CCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeee
Q 017421          256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-S-DDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~-~-~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      ..++..+..+. -...|.+|.|+ +..+-|+++ + .++.|.||+..      .+.+|...|..++++|||..+++++  
T Consensus       375 ~~~g~~i~~vd-tgsQVcsL~Ws-k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a--  450 (484)
T KOG0305|consen  375 TNTGARIDSVD-TGSQVCSLIWS-KKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA--  450 (484)
T ss_pred             cCCCcEecccc-cCCceeeEEEc-CCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec--
Confidence            99999988876 45789999999 555444443 3 56789999986      3458999999999999999999886  


Q ss_pred             eEEEeeceEEEeecccce
Q 017421          328 VISIYSPNILLDNYFLLR  345 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~  345 (372)
                          -|.++++|++....
T Consensus       451 ----~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  451 ----ADETLRFWNLFDER  464 (484)
T ss_pred             ----ccCcEEeccccCCC
Confidence                58999999988753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=2e-23  Score=180.63  Aligned_cols=213  Identities=12%  Similarity=0.109  Sum_probs=164.8

Q ss_pred             cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe-------eecccCCcceEEEEECC-CCCEEEEEeCCC
Q 017421          121 DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKD-------ILAKSLRWTVTDTSLSP-DQRHLVYASMSP  191 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  191 (372)
                      ..|.+.|+.+.+-|.. ..+|+++..+.|.|||..+.......       ..+.+|...-.+++|++ ..-.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4588999999999965 45667788899999998764332221       24567777678899999 455789999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECC--CCeEEEEeecC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE--ANKLSLRILAH  268 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~  268 (372)
                      .|.+||+...............    |     .+|...|..++|+|- ..+|++++.|+.+.|||++  +.++.....+|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~----~-----~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah  271 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTI----F-----SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH  271 (422)
T ss_pred             cEEEEeccccccCCccccceEE----e-----ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence            9999999865542111111100    1     168889999999995 4678899999999999999  55666777899


Q ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          269 TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      .+.|.|++|+|.++.+||+|+.|++|++||+|.       +.+|...|..+.|+|...-+.++++     .|+.+.+||+
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-----~D~rl~vWDl  346 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-----TDRRLNVWDL  346 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-----cCCcEEEEec
Confidence            999999999988999999999999999999994       4589999999999999765554421     5899999998


Q ss_pred             ccceEE
Q 017421          342 FLLRTF  347 (372)
Q Consensus       342 ~~~~~~  347 (372)
                      ..-...
T Consensus       347 s~ig~e  352 (422)
T KOG0264|consen  347 SRIGEE  352 (422)
T ss_pred             cccccc
Confidence            654443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=4e-22  Score=171.53  Aligned_cols=208  Identities=16%  Similarity=0.132  Sum_probs=175.9

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+++..+++|.......+.....|..+|+.+..+|.|.||++++.|++..+.|++++..+...... ...-.+++.+|+|
T Consensus       279 aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP  357 (506)
T ss_pred             cCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC
Confidence            566677888888888888899999999999999999999999999999999999999776654332 2334589999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      ||..|.+|+.||.|++||+..+.....+.                +|+++|..++|+.+|-+|+++++|+.|++||++..
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fp----------------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFP----------------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCC----------------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            99999999999999999999887433332                68899999999999999999999999999999988


Q ss_pred             eEEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCCCCeeEEEeccCCCeEEEEe
Q 017421          260 KLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       260 ~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +...++...+ ..+.++.|. +.|.+|+.++.|=.|++++-.        .+..|.+..+.+.|....+++++++
T Consensus       422 ~n~kt~~l~~~~~v~s~~fD-~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s  495 (506)
T KOG0289|consen  422 KNFKTIQLDEKKEVNSLSFD-QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS  495 (506)
T ss_pred             cccceeeccccccceeEEEc-CCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeecc
Confidence            8777776332 379999998 999999999888777777632        3446777889999999999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=5.9e-23  Score=194.83  Aligned_cols=231  Identities=16%  Similarity=0.093  Sum_probs=176.2

Q ss_pred             cCCCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCCC--------e-EEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~--------~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      ..+...|.+++.+|||..+++|+  .|+.+.||+.+.-        . ..........|.+.|.|+.|+|||++||+|+.
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            44566799999999999999999  8999999987531        1 11122234578889999999999999999999


Q ss_pred             CCeEEEEECCCCceeeecce---eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421          190 SPIVHIVDVGSGTMESLANV---TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL  266 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  266 (372)
                      |+.|.||+..........-.   ....+.+... ....+|.+.|..++|+|++.+|++++.|++|.+||.++.+.+..+.
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence            99999999874110000000   0000000000 0012688999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeec
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------------RSINPCNKYLFNPCNKYLIIYLILVISIYSP  334 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~  334 (372)
                      +|.+.|..+.|. |-|++||+-+.|++|+||++....            ........+.|||||++|++...  +.---.
T Consensus       169 ~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA--~n~~~~  245 (942)
T KOG0973|consen  169 GHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA--VNGGKS  245 (942)
T ss_pred             cccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh--ccCCcc
Confidence            999999999999 999999999999999999965311            23445788999999999998731  111135


Q ss_pred             eEEEeecccceEEEEEeeeEE
Q 017421          335 NILLDNYFLLRTFYSFMVHIL  355 (372)
Q Consensus       335 ~i~lw~~~~~~~~~~~~~h~~  355 (372)
                      ++.|.+-.+.+.-..|.||..
T Consensus       246 ~~~IieR~tWk~~~~LvGH~~  266 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGHSA  266 (942)
T ss_pred             eeEEEecCCceeeeeeecCCC
Confidence            677888888888899999953

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.2e-21  Score=161.12  Aligned_cols=234  Identities=15%  Similarity=0.132  Sum_probs=190.6

Q ss_pred             ccCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeecc
Q 017421           92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAK  166 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~  166 (372)
                      .|+..+..   .+.|+.+.+++.........+..+.-.|..++|....+.++.++.  |.+|+..++.+.+.++-   ..
T Consensus        21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY---F~   97 (311)
T KOG1446|consen   21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY---FP   97 (311)
T ss_pred             EecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE---cC
Confidence            34555543   456678999999999999999999999999999877777777666  88999999999877775   88


Q ss_pred             cCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       167 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      +|...|.++..+|-+..+++++.|++|++||++..++.......                  .-..++|+|+|-++|++.
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------~~pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------GRPIAAFDPEGLIFALAN  159 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC------------------CCcceeECCCCcEEEEec
Confidence            99999999999999999999999999999999988876655432                  334588999999999998


Q ss_pred             CCCeEEEEECCCC--eEEEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCC---CCCeeEE
Q 017421          247 SDDCIYVYDLEAN--KLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRS---INPCNKY  312 (372)
Q Consensus       247 ~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~---~~~v~~~  312 (372)
                      ....|++||++.-  .+..++.   +.....+.+.|+ |||+.|+.+...+.+++.|.-..      ..+   ..-.-+.
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence            8779999999864  2333333   345678899999 99999999999999999986421      111   1122678


Q ss_pred             EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +|+||+++++++.      .|++|.+|++.+++.+-.+.+.
T Consensus       239 ~ftPds~Fvl~gs------~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  239 TFTPDSKFVLSGS------DDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             EECCCCcEEEEec------CCCcEEEEEcCCCcEeeEecCC
Confidence            9999999999996      5899999999999999888884

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2e-21  Score=161.29  Aligned_cols=208  Identities=16%  Similarity=0.204  Sum_probs=172.7

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC--CCeEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHIV  196 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vw  196 (372)
                      .+....+.|.++.|+++|.++++++.|.+|++||..++..+..   ...++..+..+.|......++.++.  |.+|+..
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---eecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence            3444678999999999999999999999999999999977665   3344446778888776677776666  8899999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      ++.+.+.++.+.                ||...|+.++.+|-+..+++++.|++|++||++..++...+.....+  .++
T Consensus        86 sl~dNkylRYF~----------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~A  147 (311)
T KOG1446|consen   86 SLHDNKYLRYFP----------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAA  147 (311)
T ss_pred             EeecCceEEEcC----------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--cee
Confidence            999998876665                89999999999999999999999999999999988887776644333  578


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccccc-----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLLT-----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |. |.|-++|++.....|++||+|...           +.....+.+.|||||++|+.++      -.+.+.+-|+.+|.
T Consensus       148 fD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT------~~s~~~~lDAf~G~  220 (311)
T KOG1446|consen  148 FD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST------NASFIYLLDAFDGT  220 (311)
T ss_pred             EC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe------CCCcEEEEEccCCc
Confidence            98 999999999888899999999542           3355679999999999999886      46778888999999


Q ss_pred             EEEEEeeeE
Q 017421          346 TFYSFMVHI  354 (372)
Q Consensus       346 ~~~~~~~h~  354 (372)
                      ...+|.+|.
T Consensus       221 ~~~tfs~~~  229 (311)
T KOG1446|consen  221 VKSTFSGYP  229 (311)
T ss_pred             EeeeEeecc
Confidence            888887764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.3e-23  Score=185.62  Aligned_cols=231  Identities=12%  Similarity=0.133  Sum_probs=185.8

Q ss_pred             ccCCceeEeeeeeCCCC------CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceE
Q 017421          100 SAADCCHMLSRYLPVNG------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT  173 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  173 (372)
                      ++.|..+++|.......      ...++.|...|+.+....+++-|++++.|-+|++|+...+. .........|...|.
T Consensus        43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVk  121 (735)
T KOG0308|consen   43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVK  121 (735)
T ss_pred             cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchhe
Confidence            34445666777654332      35578899999999999999999999999999999998773 223334678999999


Q ss_pred             EEEE-CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421          174 DTSL-SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY  252 (372)
Q Consensus       174 ~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~  252 (372)
                      ++++ .++...+|+|+.|+.|.+||++++............     ......|+...|++++.++.|..|++|+..+.++
T Consensus       122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t-----~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr  196 (735)
T KOG0308|consen  122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT-----VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR  196 (735)
T ss_pred             eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc-----cccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence            9999 778889999999999999999988431111111000     0011126788999999999999999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEee
Q 017421          253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      +||.++++.+..+.+|...|.++..+ +||..+++++.||+|++||+.      +...|...|+++..+|+=..+++|. 
T Consensus       197 ~wDprt~~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-  274 (735)
T KOG0308|consen  197 LWDPRTCKKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-  274 (735)
T ss_pred             EeccccccceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-
Confidence            99999999999999999999999999 999999999999999999997      4557888999999999988888875 


Q ss_pred             eeEEEeeceEEEeeccc
Q 017421          327 LVISIYSPNILLDNYFL  343 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~~  343 (372)
                           -|+.|..-|+.+
T Consensus       275 -----rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  275 -----RDGNIYRTDLRN  286 (735)
T ss_pred             -----CCCcEEecccCC
Confidence                 466666666555

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.90  E-value=9.7e-23  Score=190.23  Aligned_cols=232  Identities=18%  Similarity=0.163  Sum_probs=191.4

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.|...++|+.........+.+|.+.|.++...  ..++++|+.|.+|+||+++++..+..   ..+|..+|.++..+ 
T Consensus       267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l---~~~h~~~V~~v~~~-  340 (537)
T KOG0274|consen  267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNL---LRGHTGPVNCVQLD-  340 (537)
T ss_pred             EecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEE---eccccccEEEEEec-
Confidence            5558899999999999999999999999998886  45678899999999999998876664   44589999999997 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                       +.++++|+.|+.|++||+.++++.....                ||...|.++.+.+. ..+++|+.|++|++||+++.
T Consensus       341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~----------------gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLS----------------GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             -CCEEEEEecCceEEEEEhhhceeeeeec----------------CCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence             8899999999999999999888765554                78889999988765 78999999999999999999


Q ss_pred             -eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccC-CCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          260 -KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTR-SINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       260 -~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                       +++.++.+|..-+..+.+   .+++|++++.|++|++||...      +.. +...|+.+++. +...++++       
T Consensus       403 ~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~-------  471 (537)
T KOG0274|consen  403 RKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSS-------  471 (537)
T ss_pred             hhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEe-------
Confidence             999999999998877665   478999999999999999873      334 55778887776 33344444       


Q ss_pred             eeceEEEeecccceEEEEEeeeEEEeeecccCCcc
Q 017421          332 YSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNH  366 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~~~~~~~h~~~~~~~~~~~~~  366 (372)
                      .|+++++||+.+++..+.+..+-+...+-.-.++.
T Consensus       472 ~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~  506 (537)
T KOG0274|consen  472 DDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSP  506 (537)
T ss_pred             cCCeeEEEecccCchhhhhhhcccccccccccCCC
Confidence            68999999999999998886655544444444433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.8e-22  Score=155.81  Aligned_cols=212  Identities=17%  Similarity=0.168  Sum_probs=166.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCC------CC------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE------RG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS  190 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~------~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  190 (372)
                      ....|.+++|+|.|.+.++|+...+++|-...      .+      .........+.|++.|.+.+|+|.|.+|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            36689999999999999999999988876432      11      1111223356788999999999999999999999


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCeEEEEe
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRI  265 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~s-~dg~i~iwd~~~~~~~~~~  265 (372)
                      ..|++.-++...+...-.-.      .|+     .|.+.|..++|-.+    +..|++++ .|..|++-|..+|+..+.+
T Consensus       111 k~ik~l~fn~dt~~~~g~dl------e~n-----mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDL------EFN-----MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             ceEEEEecccccccccCcce------eee-----ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            99999887765543222111      111     36679999999543    45677654 4677888899999999999


Q ss_pred             ecCCCCeEEE-EEeCCCCCEEEEEeCCCeEEEEecccc------c-------CCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          266 LAHTSDVNTV-CFGDESGHLIYSGSDDNLCKVNSVLLL------T-------RSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       266 ~~~~~~v~~~-~~sp~~~~~l~s~~~dg~i~vwd~~~~------~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      .+|.+.|.++ .|   ++-++++|+.|.+|++||++..      .       -..+.|.+++..|.|++|+++.      
T Consensus       180 sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~------  250 (350)
T KOG0641|consen  180 SGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH------  250 (350)
T ss_pred             cCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc------
Confidence            9999999887 44   5889999999999999999821      1       1236789999999999999996      


Q ss_pred             eeceEEEeecccceEEEEEeeeE
Q 017421          332 YSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      .|....|+|+.-+++++.|..|.
T Consensus       251 ~dssc~lydirg~r~iq~f~phs  273 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGRMIQRFHPHS  273 (350)
T ss_pred             CCCceEEEEeeCCceeeeeCCCc
Confidence            58888999999999999998885

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.2e-23  Score=172.80  Aligned_cols=218  Identities=12%  Similarity=0.109  Sum_probs=177.0

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|...|+.++-....+.+.+++.|.+.+||.++++.++.+   ..+|.+.|.++.|++.+.++++++.|++-.||
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHH
Confidence            345789999999999988888889999999999999999988876   77999999999999999999999999999999


Q ss_pred             ECCCCceeeecceeeccc----------ccceec--------------cCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421          197 DVGSGTMESLANVTEIHD----------GLDFSA--------------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY  252 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~----------~~~~~~--------------~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~  252 (372)
                      ...-.-..+.......+.          ...+..              -...||.+.|.+..|-..|+.+++++.|.+..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            732111111100000000          000000              01147899999999999999999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEe
Q 017421          253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +||+++++.+..+.+|....+.++-+ |..+++++.+.|.+.++||.+       .+++|...|+++.|..+.+.+..+ 
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgS-  375 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGS-  375 (481)
T ss_pred             eeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecC-
Confidence            99999999999999999999999999 999999999999999999998       467999999999999986655444 


Q ss_pred             eeeEEEeeceEEEeecccce
Q 017421          326 ILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       326 ~~~~~~~d~~i~lw~~~~~~  345 (372)
                            -|.+|++||+.+.+
T Consensus       376 ------DDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  376 ------DDRTVKVWDLRNMR  389 (481)
T ss_pred             ------CCceEEEeeecccc
Confidence                  37788888877664

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.8e-23  Score=189.31  Aligned_cols=211  Identities=15%  Similarity=0.199  Sum_probs=165.0

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCce
Q 017421          126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       126 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      .+..+.|+. +.++||+++..|.|.+||+...-.......+..|.-.+.++.|++ ...+|++|+.||.|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            345567765 578999999999999999987422223334678888999999999 556789999999999999998775


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDES  281 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~  281 (372)
                      .....                +.+..|..+.|+|. +..|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|+ |+
T Consensus       169 ~~t~~----------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh-Pn  231 (839)
T KOG0269|consen  169 KSTFR----------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH-PN  231 (839)
T ss_pred             ccccc----------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec-CC
Confidence            44443                23458999999994 688999999999999999865 4677888999999999999 79


Q ss_pred             CCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCe-EEEEeeeeEEEeeceEEEeecccce-EEEEEee
Q 017421          282 GHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKY-LIIYLILVISIYSPNILLDNYFLLR-TFYSFMV  352 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~  352 (372)
                      +.+||||+.|+.|+|||.....       ....+|..+.|-|...+ |++++    -+-|..|.+||+.--= +...|.-
T Consensus       232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcs----mv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  232 REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCS----MVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhh----ccccceEEEEeeccccccceeeec
Confidence            9999999999999999987322       45578999999999765 44443    2247889999986443 3445555


Q ss_pred             eEEEe
Q 017421          353 HILFS  357 (372)
Q Consensus       353 h~~~~  357 (372)
                      |.-..
T Consensus       308 H~~~v  312 (839)
T KOG0269|consen  308 HTDSV  312 (839)
T ss_pred             cCccc
Confidence            54433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=2.7e-22  Score=169.82  Aligned_cols=171  Identities=13%  Similarity=0.191  Sum_probs=143.6

Q ss_pred             CCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeE
Q 017421          116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV  193 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i  193 (372)
                      ..+.+.+|...=++++|||- ...|++|..-+.|++|...++.-......+.+|...|-.++|+|. ...|++++.||.|
T Consensus       203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI  282 (440)
T KOG0302|consen  203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI  282 (440)
T ss_pred             ceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence            34567899999999999993 234788888889999999887554444556679999999999994 5678999999999


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeecCCC
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRILAHTS  270 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~  270 (372)
                      +|||++.+........ .             .|.+.|+.|.|+..-.+||+|+.||+++|||+++   ++++..++-|..
T Consensus       283 rIWDiRs~~~~~~~~~-k-------------Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~  348 (440)
T KOG0302|consen  283 RIWDIRSGPKKAAVST-K-------------AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA  348 (440)
T ss_pred             EEEEecCCCccceeEe-e-------------ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence            9999998854322222 1             4777999999999888999999999999999985   568889999999


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +|+++.|+|.+...|++++.|..|.+||+.
T Consensus       349 pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  349 PITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            999999998888899999999999999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.5e-22  Score=162.13  Aligned_cols=203  Identities=17%  Similarity=0.119  Sum_probs=164.8

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEE
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd  197 (372)
                      -..|...|..+...--|++||+++.|++|+|+.++.+........+.+|.+||+.++|..  -|.+|++++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            356888898888888899999999999999999987755445556889999999999976  899999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC---eEEEEeecCCCCe
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDV  272 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v  272 (372)
                      -..++-......              ..|...|++++|.|.  |-.|++++.||.|.|.+.+..   ........|.-.|
T Consensus        87 e~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv  152 (299)
T KOG1332|consen   87 EENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV  152 (299)
T ss_pred             cCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence            988854222221              147889999999996  567899999999999998754   2233456799999


Q ss_pred             EEEEEeCCC--C-----------CEEEEEeCCCeEEEEecc--------cccCCCCCeeEEEeccCC----CeEEEEeee
Q 017421          273 NTVCFGDES--G-----------HLIYSGSDDNLCKVNSVL--------LLTRSINPCNKYLFNPCN----KYLIIYLIL  327 (372)
Q Consensus       273 ~~~~~sp~~--~-----------~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~~~~~s~~g----~~l~~~~~~  327 (372)
                      ++++|.|+.  |           +.|++|+.|..|+||+..        ++.+|...|..++|.|.-    ..|++++  
T Consensus       153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--  230 (299)
T KOG1332|consen  153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--  230 (299)
T ss_pred             ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--
Confidence            999999542  3           569999999999999986        477999999999999984    3566664  


Q ss_pred             eEEEeeceEEEeecc
Q 017421          328 VISIYSPNILLDNYF  342 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~  342 (372)
                          .|+++.+|-..
T Consensus       231 ----qDg~viIwt~~  241 (299)
T KOG1332|consen  231 ----QDGTVIIWTKD  241 (299)
T ss_pred             ----CCCcEEEEEec
Confidence                57888888543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.6e-21  Score=161.91  Aligned_cols=209  Identities=16%  Similarity=0.158  Sum_probs=157.0

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP  191 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg  191 (372)
                      ..+.+|...|++++|+.||++|++++.|+.|+||+++.-.     .++... ..+   -.+.+.|.||.+-+++... ..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~d---hpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYD---HPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCC---CceEEEECCCcceEEEEEccCC
Confidence            3578999999999999999999999999999999997631     122211 112   3678999999887776655 45


Q ss_pred             eEEEEECCCCceeeecceeec-ccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421          192 IVHIVDVGSGTMESLANVTEI-HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      .+++|.+...+-- ....... .....|    ...|+..+..+-...++.+|++++.|..|.+|+++ |+.+..+.....
T Consensus       156 ~l~vyk~~K~~dG-~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~  229 (420)
T KOG2096|consen  156 KLCVYKLVKKTDG-SGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS  229 (420)
T ss_pred             EEEEEEeeecccC-CCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence            7999987543221 1111110 011111    12477788888888888999999999999999999 988888887777


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------------cccCCCCCeeEEEeccCCCeEEEEe-eeeEEEeece
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------------LLTRSINPCNKYLFNPCNKYLIIYL-ILVISIYSPN  335 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------------~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~d~~  335 (372)
                      .-+..+.| |+|+++++++.-.-|++|.+-              .+++|...|..++|+++...+++.+ |+.+++||..
T Consensus       230 ~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  230 SNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             cccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            77889999 999999999999999999973              4669999999999999999888775 4455555544


Q ss_pred             EE
Q 017421          336 IL  337 (372)
Q Consensus       336 i~  337 (372)
                      ++
T Consensus       309 Vr  310 (420)
T KOG2096|consen  309 VR  310 (420)
T ss_pred             ce
Confidence            44

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.2e-21  Score=180.80  Aligned_cols=222  Identities=16%  Similarity=0.167  Sum_probs=179.9

Q ss_pred             eecccCccCCCCccccCCceeEeeeeeCCCC-Cccc-----cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 017421           86 LAGREGNYSGRGRFSAADCCHMLSRYLPVNG-PWPV-----DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI  159 (372)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  159 (372)
                      -..++..+.........+.....|++..... .+.+     ......+.+++.++.|++.+.|+..|.|-+|++++|-..
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r  483 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR  483 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence            3344443333333345555666777766543 2222     224578999999999999999999999999999998555


Q ss_pred             EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC
Q 017421          160 QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG  239 (372)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  239 (372)
                      ........|..+|++++...-++.+++++.+|.+++||..+........+.                 ..+.++..+...
T Consensus       484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-----------------~~~~~iv~hr~s  546 (910)
T KOG1539|consen  484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-----------------SSITGIVYHRVS  546 (910)
T ss_pred             cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----------------CCcceeeeeehh
Confidence            554445688899999999999999999999999999999887643333221                 267888888888


Q ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEe
Q 017421          240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLF  314 (372)
Q Consensus       240 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~  314 (372)
                      ..++.+..|-.|.++|+.+.+.++.+.+|.+.|++++|| |||++|++++.|++|++||+.+..     ....+++++.|
T Consensus       547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~  625 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSF  625 (910)
T ss_pred             hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC-CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEE
Confidence            889999999999999999999999999999999999999 999999999999999999998654     45678999999


Q ss_pred             ccCCCeEEEEe
Q 017421          315 NPCNKYLIIYL  325 (372)
Q Consensus       315 s~~g~~l~~~~  325 (372)
                      +|+|.+||+..
T Consensus       626 SPngD~LAT~H  636 (910)
T KOG1539|consen  626 SPNGDFLATVH  636 (910)
T ss_pred             CCCCCEEEEEE
Confidence            99999999995

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8e-22  Score=171.21  Aligned_cols=226  Identities=14%  Similarity=0.136  Sum_probs=176.3

Q ss_pred             eeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421          108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA  187 (372)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  187 (372)
                      +|.+.+........-.+++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..   ...|-.+|+++.|+-|+.+|++|
T Consensus        65 vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v---~~aHYQ~ITcL~fs~dgs~iiTg  141 (476)
T KOG0646|consen   65 VWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV---LSAHYQSITCLKFSDDGSHIITG  141 (476)
T ss_pred             ccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH---HHhhccceeEEEEeCCCcEEEec
Confidence            344443333332333578999999999999999998999999999999976665   46777789999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeEEEEe
Q 017421          188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRI  265 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~  265 (372)
                      +.||.|.+|.+..--.........  .--.|     ..|.-+|+++...+.  ...+++++.|.++++||+..+..+.++
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~--p~~~f-----~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVK--PLHIF-----SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCcc--ceeee-----ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence            999999999874211000000000  00001     157779999988765  368999999999999999999988877


Q ss_pred             ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----------------------ccCCCC--CeeEEEeccCCCeE
Q 017421          266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----------------------LTRSIN--PCNKYLFNPCNKYL  321 (372)
Q Consensus       266 ~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----------------------~~~~~~--~v~~~~~s~~g~~l  321 (372)
                      . -...+.+++.+ |.++.++.|+.+|.|.+.++..                      +.+|..  .|++++.+-||..|
T Consensus       215 ~-fp~si~av~lD-pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL  292 (476)
T KOG0646|consen  215 T-FPSSIKAVALD-PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL  292 (476)
T ss_pred             e-cCCcceeEEEc-ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence            6 56789999999 9999999999999999887641                      225555  99999999999999


Q ss_pred             EEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          322 IIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      ++|.      -|+++.+||+.+.+.++.+.
T Consensus       293 lSGd------~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  293 LSGD------EDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             EeeC------CCCCEEEEecchHHHHHHHh
Confidence            9996      68999999999988877664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.1e-21  Score=160.99  Aligned_cols=217  Identities=15%  Similarity=0.158  Sum_probs=171.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                      ..|+.|++.|.+||+|+.||.|.|||+.+-..-.   .+..|..+|++++|++||+.|++++.|..|.+||+..|.+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            7899999999999999999999999998864222   3567888999999999999999999999999999999987666


Q ss_pred             cceeecccccceeccCC------------------------------CCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 017421          207 ANVTEIHDGLDFSAADD------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL  256 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~------------------------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~  256 (372)
                      ..+.....+..+.|...                              +.-.....+..|.+.|++|++|...|.+.++|.
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            65555554444444322                              111122233468888999999999999999999


Q ss_pred             CCCeEEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----------------CCCCCeeEEEeccCC
Q 017421          257 EANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----------------RSINPCNKYLFNPCN  318 (372)
Q Consensus       257 ~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------------~~~~~v~~~~~s~~g  318 (372)
                      .+.+++..++-.. ..|..+.++ ..|++|+.-+.|..||.|+++.+.                 -....-.+++|+.+|
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg  261 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG  261 (405)
T ss_pred             chheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence            9999988877554 688999998 999999999999999999987322                 112234678999999


Q ss_pred             CeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          319 KYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      .++++++.     ---.+++|.-..|..++-+-|
T Consensus       262 eYv~a~s~-----~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  262 EYVCAGSA-----RAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             cEEEeccc-----cceeEEEEecCCcceeeeecC
Confidence            99998852     245678888888888776644

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.1e-21  Score=160.07  Aligned_cols=202  Identities=15%  Similarity=0.113  Sum_probs=150.0

Q ss_pred             CCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       123 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      -...|.+++||| ...++++++.|++|++|+++.. ....  .....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            467899999999 5667779999999999999873 3333  23457788999999999999999999999999999999


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeecC----------
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAH----------  268 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------  268 (372)
                      ++...+..                 |..+|..+.|-+...  .|++|+.|.+|+.||++...++.++.-.          
T Consensus       104 ~Q~~~v~~-----------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~  166 (347)
T KOG0647|consen  104 GQVSQVAA-----------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY  166 (347)
T ss_pred             CCeeeeee-----------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC
Confidence            97654443                 778999999987655  8899999999999999987666554311          


Q ss_pred             -------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc--------ccCCC---
Q 017421          269 -------------------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL--------LTRSI---  306 (372)
Q Consensus       269 -------------------------------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--------~~~~~---  306 (372)
                                                     .-.+.|++.. .+....+.|+-.|.+-+..+..        ++.|.   
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~  245 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN  245 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence                                           1134566666 6666667777777777766542        12222   


Q ss_pred             ------CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          307 ------NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       307 ------~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                            ..|++++|+|....|+++.      -||++.+||-.....++..
T Consensus       246 ~~~~~VYaVNsi~FhP~hgtlvTaG------sDGtf~FWDkdar~kLk~s  289 (347)
T KOG0647|consen  246 SVNDDVYAVNSIAFHPVHGTLVTAG------SDGTFSFWDKDARTKLKTS  289 (347)
T ss_pred             CCCCceEEecceEeecccceEEEec------CCceEEEecchhhhhhhcc
Confidence                  3578899999877676553      3666666665555554443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.6e-22  Score=182.96  Aligned_cols=198  Identities=12%  Similarity=0.117  Sum_probs=158.1

Q ss_pred             ccCCceeEeeeeeC---CCCCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLP---VNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+....+.+|++-.   ......|..|...+++++|++. -.+|++|++||+|++||++.......   ..+....|..+
T Consensus       106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t---~~~nSESiRDV  182 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST---FRSNSESIRDV  182 (839)
T ss_pred             ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc---ccccchhhhce
Confidence            44555667787766   3344578899999999999995 56789999999999999997755544   33455679999


Q ss_pred             EECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 017421          176 SLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  254 (372)
Q Consensus       176 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iw  254 (372)
                      +|+| .+..|+++...|.+.+||++....-...  ..             .|.++|.|+.|+|++.+||||+.|+.|+||
T Consensus       183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k--~~-------------AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK--LT-------------AHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             eeccCCCceEEEecCCceEEEeeccCchhHHHH--hh-------------cccCceEEEeecCCCceeeecCCCccEEEE
Confidence            9999 6788999999999999999876531111  11             477899999999999999999999999999


Q ss_pred             ECCCCeE--EEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeEEEEecc-------cccCCCCCeeEEEecc
Q 017421          255 DLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVNSVL-------LLTRSINPCNKYLFNP  316 (372)
Q Consensus       255 d~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i~vwd~~-------~~~~~~~~v~~~~~s~  316 (372)
                      |+.+.+.  +.++. ...+|.+|+|-|.....|++++  .|..|+|||++       ++..|...++.++|..
T Consensus       248 d~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  248 DMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             eccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            9987653  33333 3468999999976777888876  58889999997       5668999999999976

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.89  E-value=7.8e-23  Score=164.27  Aligned_cols=221  Identities=18%  Similarity=0.188  Sum_probs=189.2

Q ss_pred             CCccccCCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421          116 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  192 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  192 (372)
                      .|....+|+.+|-.++|||   +|-+|++++.|+.-.+-+-+++.-+-.   +.+|++.|++..++.+....++++.|-+
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadft   82 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADFT   82 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccch
Confidence            4566789999999999986   788899999999999888888877665   6799999999999999888999999999


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSD  271 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~  271 (372)
                      -++||.-+|..+..+.                 |...|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.
T Consensus        83 akvw~a~tgdelhsf~-----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE-----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             hhhhhhhhhhhhhhhh-----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence            9999999988654443                 55689999999999999999999999999998765 56778899999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      |..+-|. ...+.|++...|++||+||.++..     ....+|+++..+++|++|.++       |-+.|++||..+...
T Consensus       146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-------~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  146 IRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-------YGSSVKFWDAKSFGL  217 (334)
T ss_pred             ceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-------cCceeEEeccccccc
Confidence            9999999 778888888999999999999655     466799999999999999988       678889999999999


Q ss_pred             EEEEeeeEEE-eeecccCC
Q 017421          347 FYSFMVHILF-SGYLHNDH  364 (372)
Q Consensus       347 ~~~~~~h~~~-~~~~~~~~  364 (372)
                      ++++.+-+.. +--||-.+
T Consensus       218 lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  218 LKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             eeeccCccccccccccCCC
Confidence            9988665332 34455444

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=9.3e-21  Score=156.25  Aligned_cols=221  Identities=14%  Similarity=0.100  Sum_probs=172.9

Q ss_pred             ccCCceeEeeeeeCC--CCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      ++.|..+++|.+...  ..+.....|.++|.+++|+.||..+++|+.|+.+++||+.+++..    ....|..+|..+.|
T Consensus        46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~w  121 (347)
T KOG0647|consen   46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHW  121 (347)
T ss_pred             cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee----eeeecccceeEEEE
Confidence            678889999999873  445667889999999999999999999999999999999998333    26678889999999


Q ss_pred             CCCCC--EEEEEeCCCeEEEEECCCCceeeecceeecccc-----------------cceeccCC--------CCccccE
Q 017421          178 SPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-----------------LDFSAADD--------GGYSFGI  230 (372)
Q Consensus       178 ~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~--------~~h~~~i  230 (372)
                      -+...  .|++|+.|.+|+.||++.........+++....                 ..+...+.        ..-...+
T Consensus       122 v~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~  201 (347)
T KOG0647|consen  122 VPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT  201 (347)
T ss_pred             ecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee
Confidence            88555  899999999999999998776555443322111                 01111010        1234568


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCC---------CeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          231 FSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTS---------DVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      +|++..+|....+.|+-+|.+-|..+..+  +.-.+++-|..         .|++++|+ |.-..|+|++.||++.+||-
T Consensus       202 R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh-P~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  202 RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH-PVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             eEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee-cccceEEEecCCceEEEecc
Confidence            89999999888899999999999999876  44455555542         46789999 67778999999999999996


Q ss_pred             c------cccCCCCCeeEEEeccCCCeEEEEe
Q 017421          300 L------LLTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       300 ~------~~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .      +.+.+..+|++..|+.+|.+++-+.
T Consensus       281 dar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  281 DARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             hhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            5      4457899999999999999988663

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=1.2e-21  Score=169.81  Aligned_cols=206  Identities=16%  Similarity=0.173  Sum_probs=164.0

Q ss_pred             CccccCCCCceEEEEECCCC--CEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCe
Q 017421          117 PWPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI  192 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  192 (372)
                      ...+.-+.++|.+++|+|..  +++|+|...|+|-+||+.+. ...........|..+|.++.|+| +..++++.+.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            44556789999999999954  57889999999999999522 22334445778889999999999 6678999999999


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCCCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD  271 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~  271 (372)
                      |++-|++.+....+.....              -...+..+.|+.+...++.+..=|...+||++++.. ...+.-|...
T Consensus       259 iR~~D~~~~i~e~v~s~~~--------------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDT--------------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             eeeeeecchhhHHHhhcCc--------------cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence            9999999876544443321              123678889988888888888778999999998754 5566678889


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      |.+|+++|-...+|+|++.|++.+|||+|.+.          .|...|.++.|||+|-.|++..      +|.+|+|||.
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~------~D~~IRv~ds  398 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC------QDNEIRVFDS  398 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec------cCCceEEeec
Confidence            99999998888999999999999999998543          5778899999999976666543      6777777776


Q ss_pred             c
Q 017421          342 F  342 (372)
Q Consensus       342 ~  342 (372)
                      .
T Consensus       399 s  399 (498)
T KOG4328|consen  399 S  399 (498)
T ss_pred             c
Confidence            4

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=2.9e-21  Score=175.16  Aligned_cols=206  Identities=15%  Similarity=0.155  Sum_probs=174.0

Q ss_pred             cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421           99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      +.+.|.++.++..........+.+|...|.|++...++. +++|+.|.+++||....-  ...   ..+|+..|+++..-
T Consensus        76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~---l~gH~asVWAv~~l  149 (745)
T KOG0301|consen   76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYS---LQGHTASVWAVASL  149 (745)
T ss_pred             eecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcc---cCCcchheeeeeec
Confidence            467778888888888888899999999999999988888 999999999999987643  222   67999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      |++ .+++|+.|..|++|.-  ++....+.                ||...|+.+++-|++ .|++++.||.|++|++ +
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~----------------gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~  208 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--GTLLKTFS----------------GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-D  208 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--Cchhhhhc----------------cchhheeeeEEecCC-CeEeecCCceEEEEec-c
Confidence            987 8999999999999986  44333333                788899999998875 5889999999999999 7


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----LTRSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      ++++.++.+|...|+++... .++..++++++|++++||+...    +.-....|+++.+-++|..++.++|+.+++|
T Consensus       209 ge~l~~~~ghtn~vYsis~~-~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf  285 (745)
T KOG0301|consen  209 GEVLLEMHGHTNFVYSISMA-LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF  285 (745)
T ss_pred             CceeeeeeccceEEEEEEec-CCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence            88999999999999999977 7888999999999999999873    2234458899999999999988864444443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=9.2e-22  Score=165.83  Aligned_cols=222  Identities=13%  Similarity=0.083  Sum_probs=174.8

Q ss_pred             cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----------------
Q 017421           99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----------------  162 (372)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------------  162 (372)
                      ..+.|..+++|++......+.+..|.+.|.++++..  ..+++++.|.+|+.|-++.. .....                
T Consensus        84 SGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~  160 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNS  160 (433)
T ss_pred             ccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeeccccccccccccccc
Confidence            366778899999999999999999999999999987  66888899999999974431 00000                


Q ss_pred             ----------ee----------cccCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421          163 ----------IL----------AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA  221 (372)
Q Consensus       163 ----------~~----------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                                +.          ..-.-..|.++.|+|-. ..|+++..|+.|.+||++++.........           
T Consensus       161 ~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----------  229 (433)
T KOG0268|consen  161 VFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-----------  229 (433)
T ss_pred             cccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-----------
Confidence                      00          00011247788888854 45677779999999999998875443322           


Q ss_pred             CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       222 ~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                            ..-+.|+|+|.+-.+++|++|..++.||++.- .++....+|.+.|.+++|| |.|+-|++||.|.+|+||..+
T Consensus       230 ------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  230 ------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ------ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC-CCcchhccccccceEEEeecC
Confidence                  25678999998888899999999999999865 4677788999999999999 999999999999999999987


Q ss_pred             ccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          301 LLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       301 ~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      ...       ..-..|.++.||.|.+++++|+      -|++|+||.....+.+
T Consensus       303 ~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGS------dd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  303 HGHSRDIYHTKRMQHVFCVKYSMDSKYIISGS------DDGNVRLWKAKASEKL  350 (433)
T ss_pred             CCcchhhhhHhhhheeeEEEEeccccEEEecC------CCcceeeeecchhhhc
Confidence            433       1224689999999999999997      4799999987765543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=3e-21  Score=163.56  Aligned_cols=204  Identities=15%  Similarity=0.158  Sum_probs=152.8

Q ss_pred             ccCCCCceEEEEECCCC--CEEEEEeCCCcEEEEeCCCC-------------eEEEEeeecccCCcceEEEEECC-CCCE
Q 017421          120 VDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSP-DQRH  183 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~-~~~~  183 (372)
                      ...|.+.++.+.-++-+  .+.++-+..|.|+||++...             .....+....+|...=.++.||| ....
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34677777777776654  45566678899999998632             11122334567777788999999 2334


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC---
Q 017421          184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN---  259 (372)
Q Consensus       184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~---  259 (372)
                      |++|...+.|++|...++.-..-..             +-.+|+..|-.++|||.. ..|++++.||+|+|||++.+   
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~-------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~  293 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQR-------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK  293 (440)
T ss_pred             cccCccccceEeeeeccCceeecCc-------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence            8888888999999998876432222             122588899999999975 57899999999999999988   


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---------cCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------TRSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      .++.+ ++|.+.|+.+.|+ .+-.+||+|+.||+++|||+|.+         +.|..+|+++.|+|...-.+++++    
T Consensus       294 ~~~~~-kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg----  367 (440)
T KOG0302|consen  294 AAVST-KAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG----  367 (440)
T ss_pred             ceeEe-eccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----
Confidence            34444 7899999999999 77679999999999999999944         468999999999997543332211    


Q ss_pred             EeeceEEEeeccc
Q 017421          331 IYSPNILLDNYFL  343 (372)
Q Consensus       331 ~~d~~i~lw~~~~  343 (372)
                       -|.+|.+||+..
T Consensus       368 -~D~QitiWDlsv  379 (440)
T KOG0302|consen  368 -EDNQITIWDLSV  379 (440)
T ss_pred             -CCCcEEEEEeec
Confidence             477777887654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4e-21  Score=173.07  Aligned_cols=223  Identities=14%  Similarity=0.108  Sum_probs=182.7

Q ss_pred             ccCCceeEeeeeeCCC--CCccccCCCCceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCeE--------EEEeeecccC
Q 017421          100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSL  168 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~  168 (372)
                      .+.|..+++|+.....  ....+..|...|.|+++ .++..++|+|+-|+.|.+||++.+..        +.......++
T Consensus        91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence            5667788899888774  45667899999999999 88999999999999999999997622        1122223377


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  248 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d  248 (372)
                      ..+|.+++.++.|..|++|+..+.+++||.++.+......                ||+..|.++..++||+.+++++.|
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr----------------GHTdNVr~ll~~dDGt~~ls~sSD  234 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR----------------GHTDNVRVLLVNDDGTRLLSASSD  234 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccccceeeee----------------ccccceEEEEEcCCCCeEeecCCC
Confidence            8899999999999999999999999999999987644443                788999999999999999999999


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEE
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLI  322 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~  322 (372)
                      |+|++||+...+++.++..|...|+++..+ ++=..+++|+.||.|..=|++...      ....+|..+..+...+-+-
T Consensus       235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~~-~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~W  313 (735)
T KOG0308|consen  235 GTIRLWDLGQQRCLATYIVHKEGVWALQSS-PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVW  313 (735)
T ss_pred             ceEEeeeccccceeeeEEeccCceEEEeeC-CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCce
Confidence            999999999999999999999999999999 889999999999999999998532      4556777776664433332


Q ss_pred             EEeeeeEEEeeceEEEeecccce
Q 017421          323 IYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       323 ~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      +++      +|+.|+-|.....-
T Consensus       314 vtT------tds~I~rW~~~~~~  330 (735)
T KOG0308|consen  314 VTT------TDSSIKRWKLEPDI  330 (735)
T ss_pred             eee------ccccceecCCcccc
Confidence            232      68888888655433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.4e-20  Score=156.10  Aligned_cols=201  Identities=17%  Similarity=0.196  Sum_probs=167.7

Q ss_pred             ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421           98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      ..++.|..+.+++.........+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-..+..   .+.|.+.|+.+
T Consensus        57 aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s---lK~H~~~Vt~l  133 (362)
T KOG0294|consen   57 ASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS---LKAHKGQVTDL  133 (362)
T ss_pred             eccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---eccccccccee
Confidence            3477788999999999998999999999999999999765  899999999999999987655544   67888889999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCC-----------------------CccccEEE
Q 017421          176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG-----------------------GYSFGIFS  232 (372)
Q Consensus       176 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~h~~~i~~  232 (372)
                      +.+|.+++-++.+.|+.++.||+-.|+.....++......+.|.+..+.                       .....+.+
T Consensus       134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~  213 (362)
T KOG0294|consen  134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILC  213 (362)
T ss_pred             EecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcccccee
Confidence            9999999999999999999999998887666666555555666654430                       11234666


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE-EeCCCCCEEEEEeCCCeEEEEecccc
Q 017421          233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVNSVLLL  302 (372)
Q Consensus       233 ~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~sp~~~~~l~s~~~dg~i~vwd~~~~  302 (372)
                      +.|- ++..|++|..|+.|.+||..+..+...+.+|...|.++. +..|.+.+|++++.||.|+|||++.-
T Consensus       214 ~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  214 ATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            6664 467899999999999999999999999999999999998 55577899999999999999999743

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2e-20  Score=174.63  Aligned_cols=224  Identities=17%  Similarity=0.193  Sum_probs=179.3

Q ss_pred             ccCCCCcc---ccCCceeEeeeeeCC-CCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc
Q 017421           92 NYSGRGRF---SAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS  167 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  167 (372)
                      ++.+.+.|   .+.+..++.|..... ..|..+.-+...|.+++..  +.+|++|+.+++|.+|.+..+..-.-   +..
T Consensus        20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~i---L~R   94 (933)
T KOG1274|consen   20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTI---LAR   94 (933)
T ss_pred             EEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccce---eee
Confidence            44555555   566777888887777 7777777788888887765  55899999999999999987643211   223


Q ss_pred             CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       168 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                      ..-++..++|+-+|++++.|+.|-.|++.++.........+                +|.++|.++.|+|.+++||+.+.
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr----------------gh~apVl~l~~~p~~~fLAvss~  158 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR----------------GHDAPVLQLSYDPKGNFLAVSSC  158 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec----------------ccCCceeeeeEcCCCCEEEEEec
Confidence            33479999999999999999999999999998877654444                68889999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEeec--------CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc--------cCCCCCeeE
Q 017421          248 DDCIYVYDLEANKLSLRILA--------HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL--------TRSINPCNK  311 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~v~~  311 (372)
                      ||.|++||+.++.+..++.+        ....+..++|+ |+|..|+..+.|+.|++|+....        +.+...+..
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeec-CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence            99999999999887766643        13456779999 77666777778999999998632        234455899


Q ss_pred             EEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          312 YLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      +.|+|+|+|||+++      -|+.|.|||+.+
T Consensus       238 ~~wsPnG~YiAAs~------~~g~I~vWnv~t  263 (933)
T KOG1274|consen  238 LQWSPNGKYIAAST------LDGQILVWNVDT  263 (933)
T ss_pred             EEEcCCCcEEeeec------cCCcEEEEeccc
Confidence            99999999999995      589999999985

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.2e-20  Score=156.09  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=159.0

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...|..+.|+|.+..|++++.||.+++|++......    ....|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence            567999999999999999999999999999877322    2446677999999996 56799999999999999999876


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      ..+..                 |..+|.||.+++-...+++|+.|++|++||.+.......+. ....|.++..+   |+
T Consensus        88 ~~igt-----------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~  146 (323)
T KOG1036|consen   88 DQIGT-----------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GN  146 (323)
T ss_pred             eeecc-----------------CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc---CC
Confidence            44443                 77799999999988899999999999999999765555554 34478887765   77


Q ss_pred             EEEEEeCCCeEEEEeccccc------------------------------------------------------CC----
Q 017421          284 LIYSGSDDNLCKVNSVLLLT------------------------------------------------------RS----  305 (372)
Q Consensus       284 ~l~s~~~dg~i~vwd~~~~~------------------------------------------------------~~----  305 (372)
                      .|++|+.|..+.+||++.+.                                                      .|    
T Consensus       147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~  226 (323)
T KOG1036|consen  147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE  226 (323)
T ss_pred             EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence            89999999999999987211                                                      11    


Q ss_pred             -----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          306 -----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       306 -----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                           ..+|++++|+|-...+++|.      -||-|.+||..+.|.++.|..
T Consensus       227 ~~~~~~yPVNai~Fhp~~~tfaTgG------sDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  227 KDTEIIYPVNAIAFHPIHGTFATGG------SDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             CCceEEEEeceeEeccccceEEecC------CCceEEEccCcchhhhhhccC
Confidence                 12789999999988888885      477788888888877666543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=4e-22  Score=168.01  Aligned_cols=234  Identities=15%  Similarity=0.124  Sum_probs=174.6

Q ss_pred             ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421           98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      .+..+-..-.+-+.+..+....+.+|...|.|++=+|.. ..+++|+.||.|+|||+.+-.+...   +..|.+.|..+.
T Consensus        40 Ey~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   40 EYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---FKAHEGLVRGIC  116 (433)
T ss_pred             HHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---eecccCceeeEE
Confidence            343333444555666666677789999999999999977 7799999999999999987655554   668888999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc-------cceeccC------C----------CCccccEEEE
Q 017421          177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-------LDFSAAD------D----------GGYSFGIFSL  233 (372)
Q Consensus       177 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~------~----------~~h~~~i~~~  233 (372)
                      +..  ..+++++.|.+|+.|.+.... .....-.....+       ..|....      +          .-....|.++
T Consensus       117 v~~--~~~~tvgdDKtvK~wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~sv  193 (433)
T KOG0268|consen  117 VTQ--TSFFTVGDDKTVKQWKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSV  193 (433)
T ss_pred             ecc--cceEEecCCcceeeeeccCCc-ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEE
Confidence            986  668889999999999865431 111100000000       0011000      0          0112367888


Q ss_pred             EEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCC
Q 017421          234 KFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRS  305 (372)
Q Consensus       234 ~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~  305 (372)
                      .|+|.. ..|+++..|+.|.+||++++.++..+. -...-+.++|+ |.+-.|++|+.|..++.||++.+       .+|
T Consensus       194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Iswn-PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWN-PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             ecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecC-ccccceeeccccccceehhhhhhcccchhhccc
Confidence            888865 456777789999999999998877765 33455789999 68888999999999999999854       378


Q ss_pred             CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          306 INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       306 ~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      .+.|.+++|+|.|+-+++|+      ||.+|+++.+..++
T Consensus       272 vsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~  305 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGH  305 (433)
T ss_pred             ceeEEEeccCCCcchhcccc------ccceEEEeecCCCc
Confidence            89999999999999999988      99999999987764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.87  E-value=2.7e-21  Score=165.50  Aligned_cols=210  Identities=20%  Similarity=0.230  Sum_probs=170.9

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.|....+|+.........+.+|++.|+++.|......+++|+.|.+|++||+....+........    .+..|..+ 
T Consensus       237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S----~cnDI~~~-  311 (459)
T KOG0288|consen  237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS----QCNDIVCS-  311 (459)
T ss_pred             ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc----cccceEec-
Confidence            5556678899999999999999999999999998877779999999999999999987766544333    24445544 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                       ...+++|..|+.|++||+++..+......                 .+.|+++..++++..+.+.+.|.++.+.|+++.
T Consensus       312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-----------------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~  373 (459)
T KOG0288|consen  312 -ISDVISGHFDKKVRFWDIRSADKTRSVPL-----------------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK  373 (459)
T ss_pred             -ceeeeecccccceEEEeccCCceeeEeec-----------------CcceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence             55688899999999999999887554432                 238999999999999999999999999999999


Q ss_pred             eEEEEeecC----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeee
Q 017421          260 KLSLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       260 ~~~~~~~~~----~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      +....+.+.    ....+.+.|| |++.++++|+.||.|+||++.+.+        .....|+++.|+|.|..|+++.  
T Consensus       374 eI~~~~sA~g~k~asDwtrvvfS-pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad--  450 (459)
T KOG0288|consen  374 EIRQTFSAEGFKCASDWTRVVFS-PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD--  450 (459)
T ss_pred             cEEEEeeccccccccccceeEEC-CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc--
Confidence            887777632    2357889999 999999999999999999997433        2223699999999999998875  


Q ss_pred             eEEEeeceEEEe
Q 017421          328 VISIYSPNILLD  339 (372)
Q Consensus       328 ~~~~~d~~i~lw  339 (372)
                          -+..+.+|
T Consensus       451 ----k~~~v~lW  458 (459)
T KOG0288|consen  451 ----KQKAVTLW  458 (459)
T ss_pred             ----CCcceEec
Confidence                24555565

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.4e-22  Score=182.88  Aligned_cols=206  Identities=15%  Similarity=0.192  Sum_probs=179.6

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      .+..|...|.++..-..++.+++|+.|-.+-+|.......+..   +.+|..+|.++.|+++..+|+.|+.+|.|++||+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---LTGHESPIESLTFDTSERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---eeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence            4456888999999877889999999999999999877655543   6789999999999999999999999999999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      +.++......                ||...+.++.|+|-+.+++.|+.|+.+++||++..-|.+.+.+|...|.++.|+
T Consensus       100 eeAk~vrtLt----------------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ls  163 (825)
T KOG0267|consen  100 EEAKIVRTLT----------------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLS  163 (825)
T ss_pred             hhhhhhhhhh----------------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeec
Confidence            9887544332                688899999999999999999999999999999888999999999999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          279 DESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                       |+|++++.++.|..++|||+.      .+..|...+.++.|+|..-.++.++      .|.++++||..+-..+.+.
T Consensus       164 -P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs------~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  164 -PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS------SDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             -CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC------CCceeeeeccceeEEeecc
Confidence             999999999999999999995      3457889999999999988888775      5888999998876655543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=8.1e-21  Score=164.72  Aligned_cols=214  Identities=15%  Similarity=0.119  Sum_probs=178.8

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEee--------------ec-ccCCcceEEEEECCCC
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------~~-~~~~~~v~~~~~~~~~  181 (372)
                      ...+..|.-+|.+++++|+..+.++++.+++|.=|++.++.......              .. ..|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            34567799999999999999999999999999999998875331110              11 2677789999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL  261 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  261 (372)
                      ++|++|+.|..|.||+.++.+.+....                +|...|.+++|-.....+++++.|++|++|+++....
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhccc----------------ccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            999999999999999999988655433                6888999999988778899999999999999999888


Q ss_pred             EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421          262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI  336 (372)
Q Consensus       262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i  336 (372)
                      +.++.+|...|.++... ..++.+-+|+.|+++++|++.     ...++...+-+++|-.+..++ +|+      -+|.|
T Consensus       279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hfv-sGS------dnG~I  350 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFV-SGS------DNGSI  350 (479)
T ss_pred             HHHHhCCccceeeechh-cccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccccee-ecc------CCceE
Confidence            88999999999999887 777788888899999999996     344778889999998775554 454      48999


Q ss_pred             EEeecccceEEEEE-eeeE
Q 017421          337 LLDNYFLLRTFYSF-MVHI  354 (372)
Q Consensus       337 ~lw~~~~~~~~~~~-~~h~  354 (372)
                      .||++...+++..+ ..|-
T Consensus       351 aLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             EEeeecccCceeEeecccc
Confidence            99999999987765 4454

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=3.1e-19  Score=165.19  Aligned_cols=244  Identities=14%  Similarity=0.105  Sum_probs=196.5

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+....+|++......+.+.++...|+++.=+|-=..+|.|..+|+|.|+++..++.+.....   ..++|++++|..
T Consensus       178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~---d~g~VtslSFrt  254 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ---DWGRVTSLSFRT  254 (910)
T ss_pred             eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc---cccceeEEEecc
Confidence            56667788999999999999999999999999999999999999999999999999977766332   246899999999


Q ss_pred             CCCEE-EEEeCCCeEEEEECCCCceeeecceee--cccc---------------------ccee----------------
Q 017421          180 DQRHL-VYASMSPIVHIVDVGSGTMESLANVTE--IHDG---------------------LDFS----------------  219 (372)
Q Consensus       180 ~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~---------------------~~~~----------------  219 (372)
                      ||..+ ++|+..|.+.+||++..+.........  ...+                     ..|.                
T Consensus       255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs  334 (910)
T KOG1539|consen  255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS  334 (910)
T ss_pred             CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence            99865 555667999999998766433322000  0000                     0111                


Q ss_pred             ---------ccC---------C----------------------------------------------------------
Q 017421          220 ---------AAD---------D----------------------------------------------------------  223 (372)
Q Consensus       220 ---------~~~---------~----------------------------------------------------------  223 (372)
                               ...         +                                                          
T Consensus       335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv  414 (910)
T KOG1539|consen  335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV  414 (910)
T ss_pred             CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence                     000         0                                                          


Q ss_pred             --------------------C----Cc------cccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe---ecCCC
Q 017421          224 --------------------G----GY------SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTS  270 (372)
Q Consensus       224 --------------------~----~h------~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~  270 (372)
                                          +    .+      ...+++++.++.|++.+.|+..|.|.+|++++|-....+   ..|.+
T Consensus       415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~  494 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG  494 (910)
T ss_pred             eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence                                0    01      256788999999999999999999999999999887777   48999


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----------------------------------------------cc
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----------------------------------------------LT  303 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----------------------------------------------~~  303 (372)
                      +|+.++.. ..++.+++++.+|-+++||...                                               +.
T Consensus       495 ~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  495 EVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             ceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence            99999998 8899999999999999999751                                               22


Q ss_pred             CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          304 RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       304 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +|...|+.++|||||++|++++      -|++|++||+.++..+..+...
T Consensus       574 gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCcceeeeEecC
Confidence            7899999999999999999986      6999999999999999887554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6e-20  Score=152.35  Aligned_cols=206  Identities=14%  Similarity=0.130  Sum_probs=162.9

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC--EEEEEeCCCeEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIVH  194 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~  194 (372)
                      .+.+..|.+.+++++.+  ++++|+|+.|-+|+|||+.....+..   ...|.+.|+++.|.+...  +|++|+.||.|.
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~---ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGI---LLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcc---eeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            45667899999999987  99999999999999999988755554   446788999999999765  899999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  274 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~  274 (372)
                      +|+...-.+.....                +|...|+.++.+|.+++-++.+.|+.+++||+-+|+.-..+.- ....+.
T Consensus       111 iw~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~  173 (362)
T KOG0294|consen  111 IWRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATL  173 (362)
T ss_pred             EEEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCccee
Confidence            99997765433333                5777899999999999999999999999999998876554442 223355


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      +.|+ |.|.+++.++.+ .|-+|.+..-.     .....+.++.|-.. ..|++|.      -|..|++||-.++.++..
T Consensus       174 v~w~-~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~~L~vG~------d~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  174 VSWS-PQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDG-SELLVGG------DNEWISLKDTDSDTPLTE  244 (362)
T ss_pred             eEEc-CCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCC-ceEEEec------CCceEEEeccCCCcccee
Confidence            9999 999988888655 58899887322     22344677777554 4555554      368899999999999999


Q ss_pred             Eeee
Q 017421          350 FMVH  353 (372)
Q Consensus       350 ~~~h  353 (372)
                      |.+|
T Consensus       245 ~~AH  248 (362)
T KOG0294|consen  245 FLAH  248 (362)
T ss_pred             eecc
Confidence            9998

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=2e-20  Score=163.92  Aligned_cols=189  Identities=16%  Similarity=0.192  Sum_probs=155.6

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      -.|..-|.++.+|...+++.+|+. |.|+|||+......  ...+........|.++.+.|||+.|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            468888999999999999999987 78999999753211  111111223346999999999999999999999999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      ..........+....              -....++.+||.+..+++..||.|.|||+.+...++.+.+|...+.||.++
T Consensus       495 AapTprikaeltssa--------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSA--------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             cCCCcchhhhcCCcc--------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            877653333322111              146678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                       ++|..|-+|+-|++||.||++...     ...+.|.++..+|++.+|+++.
T Consensus       561 -~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGM  611 (705)
T KOG0639|consen  561 -KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM  611 (705)
T ss_pred             -CCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeec
Confidence             999999999999999999998544     4567899999999999999995

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=1.4e-18  Score=154.34  Aligned_cols=241  Identities=17%  Similarity=0.141  Sum_probs=163.2

Q ss_pred             CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421          102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (372)
                      .+..+.+|+.........+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.....   ..+. .+..+.|+|+
T Consensus         9 ~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---~~~~-~~~~~~~~~~   83 (300)
T TIGR03866         9 KDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL---PSGP-DPELFALHPN   83 (300)
T ss_pred             CCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---cCCC-CccEEEECCC
Confidence            3455666665544444445544 346789999999876 56678899999999987654432   2222 3567899999


Q ss_pred             CCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCC------------------C-------CccccEEEEE
Q 017421          181 QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------G-------GYSFGIFSLK  234 (372)
Q Consensus       181 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-------~h~~~i~~~~  234 (372)
                      ++.++++ ..++.|++||+.+++............++.+.++..                  .       .....+..++
T Consensus        84 g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (300)
T TIGR03866        84 GKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAE  163 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEE
Confidence            9977655 458999999998876433222111112222222110                  0       0112345688


Q ss_pred             EcCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCC-------CCeEEEEEeCCCCCEEEE-EeCCCeEEEEeccccc--
Q 017421          235 FSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHT-------SDVNTVCFGDESGHLIYS-GSDDNLCKVNSVLLLT--  303 (372)
Q Consensus       235 ~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~l~s-~~~dg~i~vwd~~~~~--  303 (372)
                      |+|++++|+++ ..++.|.+||+++++.+..+..+.       .....++|+ ++++++++ .+.++.|.+||+++.+  
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC-CCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            99999988554 468999999999998776654221       123568899 88887654 4456789999987432  


Q ss_pred             ---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          304 ---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       304 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                         .+...+.+++|+|+|++|+++..     .++.|++||..+++.+..+...
T Consensus       243 ~~~~~~~~~~~~~~~~~g~~l~~~~~-----~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       243 DYLLVGQRVWQLAFTPDEKYLLTTNG-----VSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EEEEeCCCcceEEECCCCCEEEEEcC-----CCCeEEEEECCCCcEEEEEEcc
Confidence               23457889999999999987631     4789999999999988877643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.4e-19  Score=167.58  Aligned_cols=213  Identities=15%  Similarity=0.158  Sum_probs=171.2

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.++.+........+...+-++++++|+.+|+++|.|+.|-.|++.++.+......   ..+|.++|.++.|+|
T Consensus        72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~---lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV---LRGHDAPVLQLSYDP  148 (933)
T ss_pred             eeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee---ecccCCceeeeeEcC
Confidence            44555666777666666667778889999999999999999999999999999987654444   779999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      .+++||+.+.||.|++||+.++.+.........  ...+      .....+..++|+|+|..++....|+.|++|+...+
T Consensus       149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k--~n~~------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK--DNEF------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             CCCEEEEEecCceEEEEEcccchhhhhcccCCc--cccc------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence            999999999999999999998876433221111  1111      11346788999999888888888999999999999


Q ss_pred             eEEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccccCC--CCCeeEEEeccCCCeEEEE
Q 017421          260 KLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRS--INPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       260 ~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~v~~~~~s~~g~~l~~~  324 (372)
                      +....+..  +...+.+++|+ |+|.+||+++.||.|.|||.++...|  ...|.+++|.|+...+..-
T Consensus       221 e~~f~Lr~~~~ss~~~~~~ws-PnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQWS-PNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             eeheeecccccccceEEEEEc-CCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEEE
Confidence            88777753  44458999999 89999999999999999999975543  4679999999998766543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.3e-18  Score=143.96  Aligned_cols=238  Identities=14%  Similarity=0.154  Sum_probs=175.3

Q ss_pred             ccccCCceeEeeeeeCCCCCccc----cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCC------CeEEEEeeec
Q 017421           98 RFSAADCCHMLSRYLPVNGPWPV----DQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVER------GWKIQKDILA  165 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~  165 (372)
                      ...+.|+.+.+|++......+..    +.|.+.|..+.|.+  -|+.+|+++.|+++.||.-..      +.........
T Consensus        29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl  108 (361)
T KOG2445|consen   29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL  108 (361)
T ss_pred             eeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe
Confidence            34778889999998666666654    56899999999965  589999999999999998532      1222233345


Q ss_pred             ccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CC
Q 017421          166 KSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GR  240 (372)
Q Consensus       166 ~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~  240 (372)
                      ...+..|+.+.|.|  -|-.+++++.||.++||+.-.........+....   ..-+.+...+..+..|+.|+|.   ..
T Consensus       109 ~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei---~~~~~pp~~~~~~~~CvsWn~sr~~~p  185 (361)
T KOG2445|consen  109 VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI---QNVIDPPGKNKQPCFCVSWNPSRMHEP  185 (361)
T ss_pred             ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh---hhccCCcccccCcceEEeeccccccCc
Confidence            56677899999999  5778999999999999997554332222211111   1111122346678899999985   46


Q ss_pred             EEEEEeCC-----CeEEEEECCCC----eEEEEeecCCCCeEEEEEeCCCC---CEEEEEeCCCeEEEEeccc-------
Q 017421          241 ELVAGSSD-----DCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVNSVLL-------  301 (372)
Q Consensus       241 ~l~s~s~d-----g~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~---~~l~s~~~dg~i~vwd~~~-------  301 (372)
                      +|+.|+.+     +.+.||....+    ..+.++.+|..+|++++|.|.-|   .+||+++.|| |+||.++.       
T Consensus       186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~  264 (361)
T KOG2445|consen  186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE  264 (361)
T ss_pred             eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence            88888866     46888876543    35566779999999999996555   4789999999 99999862       


Q ss_pred             -------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          302 -------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       302 -------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                                         +.+|...|+.+.|+-.|..|++.+      -||++++|...-..
T Consensus       265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG------dDG~VRLWkany~n  321 (361)
T KOG2445|consen  265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG------DDGCVRLWKANYNN  321 (361)
T ss_pred             hcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC------CCceeeehhhhhhh
Confidence                               237889999999999999998775      48888888754443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=157.08  Aligned_cols=208  Identities=16%  Similarity=0.198  Sum_probs=168.1

Q ss_pred             CCCCcc--cc-CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------CeEEEEeee
Q 017421           94 SGRGRF--SA-ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------GWKIQKDIL  164 (372)
Q Consensus        94 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~  164 (372)
                      ++.+.|  .+ ....+.+|.+..+.-...+..|-..|+|+.|+-||.+|++|+.||.|.+|.+..      .........
T Consensus        90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~  169 (476)
T KOG0646|consen   90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI  169 (476)
T ss_pred             CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence            444444  33 345678999999888888899999999999999999999999999999998753      112333445


Q ss_pred             cccCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE
Q 017421          165 AKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  242 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l  242 (372)
                      +.+|.-+|+++...+.  ..++++++.|.++++||+..+........+                 ..+.+++.+|-++.+
T Consensus       170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-----------------~si~av~lDpae~~~  232 (476)
T KOG0646|consen  170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-----------------SSIKAVALDPAERVV  232 (476)
T ss_pred             eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-----------------CcceeEEEcccccEE
Confidence            7788889999988774  467999999999999999999765444322                 379999999999999


Q ss_pred             EEEeCCCeEEEEECCCC----------------eEEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCeEEEEecc----
Q 017421          243 VAGSSDDCIYVYDLEAN----------------KLSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVNSVL----  300 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~~----------------~~~~~~~~~~~--~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~----  300 (372)
                      +.|+.+|.|.+.++...                ..+..+.+|.+  .|+|++++ -||.+|++|+.||.++|||+.    
T Consensus       233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlSGd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-TDGTLLLSGDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-cCccEEEeeCCCCCEEEEecchHHH
Confidence            99999999998887432                23455678888  99999999 999999999999999999986    


Q ss_pred             --cccCCCCCeeEEEeccCCC
Q 017421          301 --LLTRSINPCNKYLFNPCNK  319 (372)
Q Consensus       301 --~~~~~~~~v~~~~~s~~g~  319 (372)
                        ++....++|+.+.+.|--+
T Consensus       312 iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  312 IRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             HHHHhhhccccceeEeecccc
Confidence              3334678999999866543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=7.5e-19  Score=152.69  Aligned_cols=245  Identities=17%  Similarity=0.219  Sum_probs=185.8

Q ss_pred             ccccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cceE
Q 017421           98 RFSAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVT  173 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~  173 (372)
                      ...+.++.++++.+.....+..  +.--..+|.+.+|+|+|. .+++++.-..++.||+.+.+. .+.....++. ..+.
T Consensus       229 lvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~-~k~~~~~g~e~~~~e  307 (514)
T KOG2055|consen  229 LVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV-TKLKPPYGVEEKSME  307 (514)
T ss_pred             EEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc-ccccCCCCcccchhh
Confidence            3466677777777665444433  233478899999999998 888999999999999987633 2322333333 3477


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 017421          174 DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV  253 (372)
Q Consensus       174 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i  253 (372)
                      ....+|++++|+..+..|.|.+....++..+......                 +.|..++|+.|++.|++.+.+|.|.+
T Consensus       308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-----------------G~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-----------------GVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             eeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----------------cEEeeEEEecCCcEEEEEcCCceEEE
Confidence            8889999999999999999999999988875555432                 37899999999999999999999999


Q ss_pred             EECCCCeEEEEeecCCC-CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------------ccCCCCCeeEEEeccCCCe
Q 017421          254 YDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------------LTRSINPCNKYLFNPCNKY  320 (372)
Q Consensus       254 wd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------------~~~~~~~v~~~~~s~~g~~  320 (372)
                      ||++...+++++....+ .-++++.+ .++.+||+|+..|.|.|||..+            +......|+++.|+||++.
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi  449 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI  449 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence            99999999988874322 33577888 8999999999999999999752            2355678999999999999


Q ss_pred             EEEEeeeeEEEeeceEEEeecccceEEEEE---------eeeEEEe---eecccCCc
Q 017421          321 LIIYLILVISIYSPNILLDNYFLLRTFYSF---------MVHILFS---GYLHNDHN  365 (372)
Q Consensus       321 l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~---------~~h~~~~---~~~~~~~~  365 (372)
                      ||.++    +.-+..++|--+.+...+..|         ...+.|+   |||.--++
T Consensus       450 LAiaS----~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  450 LAIAS----RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             hhhhh----hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence            99885    234566777666666655554         3335565   77765444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.5e-19  Score=156.24  Aligned_cols=226  Identities=12%  Similarity=0.164  Sum_probs=171.5

Q ss_pred             ccccCCceeEeeeeeCCCC--C-c------------------cccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 017421           98 RFSAADCCHMLSRYLPVNG--P-W------------------PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVER  155 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~--~-~------------------~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~  155 (372)
                      .+...+..+-+|++.-...  | .                  .-.+|+..|..++|+.+ .+.||+|+.|.+|++||+.+
T Consensus       196 AiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~  275 (463)
T KOG0270|consen  196 AIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT  275 (463)
T ss_pred             EEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC
Confidence            4566677777887763322  1 1                  12369999999999885 46789999999999999999


Q ss_pred             CeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEE
Q 017421          156 GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK  234 (372)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  234 (372)
                      +++...   ...|...|.++.|+| ....|++|+.|++|.+.|.+........  .              ...+.|-.++
T Consensus       276 g~p~~s---~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--w--------------k~~g~VEkv~  336 (463)
T KOG0270|consen  276 GKPKSS---ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--W--------------KFDGEVEKVA  336 (463)
T ss_pred             CCccee---hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--E--------------EeccceEEEE
Confidence            977665   457788999999999 5678999999999999999853221111  1              0224799999


Q ss_pred             EcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCC-
Q 017421          235 FSTDG-RELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSI-  306 (372)
Q Consensus       235 ~sp~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~-  306 (372)
                      |.|.. ..+++++.||+|+-+|++.. +++.++++|..+|.++++++....++++++.|+.|++|++..-.     .|. 
T Consensus       337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~  416 (463)
T KOG0270|consen  337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF  416 (463)
T ss_pred             ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence            99965 56778889999999999975 89999999999999999997788899999999999999986222     111 


Q ss_pred             --CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          307 --NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       307 --~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                        +...++++.|+-.++++..+     -.+.+++||+.+...+
T Consensus       417 ~~~rl~c~~~~~~~a~~la~GG-----~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  417 KLGRLHCFALDPDVAFTLAFGG-----EKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccceeecccCCCcceEEEecC-----ccceEEEeecccChhH
Confidence              23466677777655444321     2557899999887654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=5.4e-19  Score=150.80  Aligned_cols=210  Identities=15%  Similarity=0.134  Sum_probs=166.4

Q ss_pred             ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEE----EEeeecccCCcceEEEEECCC-CCEEEEEeCCC
Q 017421          118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPD-QRHLVYASMSP  191 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg  191 (372)
                      -.+.+|+++|..++|+| +...||+|+.|.+|.||.+..+...    .....+.+|...|--++|+|. .+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            35689999999999999 6778999999999999998765322    223346789999999999994 56789999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  271 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  271 (372)
                      .|.+||+.+++.....                 .|..-|.++.|+.||.+|++.+.|..|+|||.++++.+..-.+|.+.
T Consensus       155 ~v~iWnv~tgeali~l-----------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITL-----------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             eEEEEeccCCceeeec-----------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence            9999999999864332                 25668999999999999999999999999999999998888788762


Q ss_pred             -eEEEEEeCCCCCEEEEEe---CCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          272 -VNTVCFGDESGHLIYSGS---DDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       272 -v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                       ...+.|- .+|.++-+|-   .+..+-+||...+.        ...+.|.-.-|.||...++.+.-     =|++|+.+
T Consensus       218 k~~Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK-----GD~~IRYy  291 (472)
T KOG0303|consen  218 KPARAIFL-ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK-----GDSSIRYF  291 (472)
T ss_pred             CcceeEEe-ccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec-----CCcceEEE
Confidence             3345566 7888555542   46789999987554        34456666678899888877642     28999999


Q ss_pred             ecccceEEEEE
Q 017421          340 NYFLLRTFYSF  350 (372)
Q Consensus       340 ~~~~~~~~~~~  350 (372)
                      .+....++-.|
T Consensus       292 Eit~d~P~~hy  302 (472)
T KOG0303|consen  292 EITNEPPFVHY  302 (472)
T ss_pred             EecCCCceeEE
Confidence            99888765444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=7.4e-20  Score=160.41  Aligned_cols=225  Identities=15%  Similarity=0.152  Sum_probs=177.1

Q ss_pred             ccccCCceeEeeeeeCCCCCcc---c--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421           98 RFSAADCCHMLSRYLPVNGPWP---V--DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV  172 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  172 (372)
                      .|+++..++++|++........   +  ......|+++.+.|||+.|++|+.-.++.|||+.......+.. +....-..
T Consensus       434 VyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae-ltssapaC  512 (705)
T KOG0639|consen  434 VYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPAC  512 (705)
T ss_pred             eEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh-cCCcchhh
Confidence            4577778899999876433222   1  2245779999999999999999999999999998653322211 11111247


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421          173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY  252 (372)
Q Consensus       173 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~  252 (372)
                      .+++.+||.+..++++.||.|.|||+........+.                ||...+.||..++||..|-+|+-|.+|+
T Consensus       513 yALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq----------------GhtDGascIdis~dGtklWTGGlDntvR  576 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------------GHTDGASCIDISKDGTKLWTGGLDNTVR  576 (705)
T ss_pred             hhhhcCCccceeeeeccCCcEEEEEcccceeeeccc----------------CCCCCceeEEecCCCceeecCCCcccee
Confidence            789999999999999999999999999877655554                7899999999999999999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeee
Q 017421          253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      -||++++..+.... ....|.++.++ |++.++++|-.++.+-|-...     .+..|.+-|.++.|++.|+++++..  
T Consensus       577 cWDlregrqlqqhd-F~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG--  652 (705)
T KOG0639|consen  577 CWDLREGRQLQQHD-FSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG--  652 (705)
T ss_pred             ehhhhhhhhhhhhh-hhhhheecccC-CCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC--
Confidence            99999988765543 45789999999 999999999999998887765     3447888999999999999988653  


Q ss_pred             eEEEeeceEEEeecccceEE
Q 017421          328 VISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~~~  347 (372)
                          -|+-+..|...-|..+
T Consensus       653 ----kDnlLnawrtPyGasi  668 (705)
T KOG0639|consen  653 ----KDNLLNAWRTPYGASI  668 (705)
T ss_pred             ----chhhhhhccCccccce
Confidence                3555666655544433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.82  E-value=4.3e-19  Score=161.15  Aligned_cols=215  Identities=14%  Similarity=0.151  Sum_probs=173.9

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE-EEECC-CCCEEEEEeCCCeEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVHI  195 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~v  195 (372)
                      +.+.+|...|..++..+.. .+++++.||++++|+-..++.+.. ....++.+-|.. +++.+ ++-.+++|+.|..|.+
T Consensus         8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCcceEeecccceEEE
Confidence            4678899999998876544 789999999999999866544432 223444444544 77776 4456999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      |...+........                ||.+.|++++...++. +++||.|.++++|-.  +++...+.+|...|+++
T Consensus        86 ~~~~~~~P~~~Lk----------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv  146 (745)
T KOG0301|consen   86 FKLSQAEPLYTLK----------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAV  146 (745)
T ss_pred             EecCCCCchhhhh----------------ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeee
Confidence            9998887655544                7999999999877777 999999999999975  45556689999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEecc----cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVL----LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      +.- |.+ .++|||.|.+|++|.-.    ++.+|..-|..+++-+++.++.++       -|+.|++|+. +|..+..+.
T Consensus       147 ~~l-~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScs-------NDg~Ir~w~~-~ge~l~~~~  216 (745)
T KOG0301|consen  147 ASL-PEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCS-------NDGSIRLWDL-DGEVLLEMH  216 (745)
T ss_pred             eec-CCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeec-------CCceEEEEec-cCceeeeee
Confidence            998 655 89999999999999854    677999999999999999988888       6999999999 899999999


Q ss_pred             eeEEEe---eecccC
Q 017421          352 VHILFS---GYLHND  363 (372)
Q Consensus       352 ~h~~~~---~~~~~~  363 (372)
                      ||..|-   .+.++.
T Consensus       217 ghtn~vYsis~~~~~  231 (745)
T KOG0301|consen  217 GHTNFVYSISMALSD  231 (745)
T ss_pred             ccceEEEEEEecCCC
Confidence            996543   444443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=5.6e-18  Score=139.56  Aligned_cols=207  Identities=14%  Similarity=0.168  Sum_probs=155.0

Q ss_pred             cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC---CCCEEEEEeCCCeEEEE
Q 017421          121 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       121 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vw  196 (372)
                      .+|.-.|..+.|-| |.-.|.+++.|.+++|||..+.+....+    ...+.|.+-+|+|   .-.++++|..+-.|++.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence            56888999999999 6678889999999999999987554432    3334688889998   34578889999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC-eEEEEe---------
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEAN-KLSLRI---------  265 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~~~~-~~~~~~---------  265 (372)
                      |+.+|.......                ||...|..+.|+|...+ |++|+.||.|++||++.. -+...+         
T Consensus       174 Di~SGs~sH~Ls----------------GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p  237 (397)
T KOG4283|consen  174 DIASGSFSHTLS----------------GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP  237 (397)
T ss_pred             eccCCcceeeec----------------cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence            999998754444                78999999999998775 479999999999999864 233322         


Q ss_pred             -----ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCC----CeeEEEeccCCCeEEEE-eeeeE-E
Q 017421          266 -----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSIN----PCNKYLFNPCNKYLIIY-LILVI-S  330 (372)
Q Consensus       266 -----~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~----~v~~~~~s~~g~~l~~~-~~~~~-~  330 (372)
                           .+|.+.|..++|+ .++.++++++.|..+++|+.....    ....    .-.++++.     +-++ ++-++ -
T Consensus       238 ~~~~n~ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-----~~~~~s~vfv~~  311 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-----IQSMDSDVFVLF  311 (397)
T ss_pred             cccccccccceeeeeeec-ccchhhhhccCccceEEeecccCcccccccccccccccccceEE-----EeecccceEEEE
Confidence                 3577889999999 999999999999999999986332    1111    11222222     0011 11111 1


Q ss_pred             EeeceEEEeecccceEEEEEeee
Q 017421          331 IYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      -+++.+.|.++..+..++.+.+|
T Consensus       312 p~~~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  312 PNDGSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             ecCCeEEEEEccCceEEEeeecc
Confidence            15788889999999999888888

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4e-18  Score=141.86  Aligned_cols=243  Identities=13%  Similarity=0.152  Sum_probs=171.0

Q ss_pred             ccceeeeecccC-----ccCCCCcc---ccCCceeEeeeeeCCCC----CccccCCCCceEEEEECCCCCEEEEE-eCCC
Q 017421           80 VSTVKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNG----PWPVDQTTSRAYVSQFSADGSLFVAG-FQAS  146 (372)
Q Consensus        80 ~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg  146 (372)
                      +-....|+||..     .|+.++..   .++|+.+++|....-..    ..+..-.-+..+.+.|+||-+-+++. -...
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            334556777776     45666654   67788889988765321    11222223456788999998776554 4556


Q ss_pred             cEEEEeCCCCe---E------EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccc
Q 017421          147 QIRIYDVERGW---K------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD  217 (372)
Q Consensus       147 ~i~vwd~~~~~---~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  217 (372)
                      ++++|.+...+   .      .-.......|+-.+..+-....+.+|++++.|..|.+|+++ |+........       
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-------  227 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-------  227 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-------
Confidence            89999875321   1      11112234566677888888889999999999999999998 6554333321       


Q ss_pred             eeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC---CC-----eEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421          218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---AN-----KLSLRILAHTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       218 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                               ...-+..+.||+|+++++++.--.|++|.+-   .|     ..+..+.+|...|..++|+ ++...+++.+
T Consensus       228 ---------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvS  297 (420)
T KOG2096|consen  228 ---------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVS  297 (420)
T ss_pred             ---------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEe
Confidence                     1245567889999999999988899999863   33     2456788999999999999 9999999999


Q ss_pred             CCCeEEEEecc----------ccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          290 DDNLCKVNSVL----------LLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       290 ~dg~i~vwd~~----------~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      .||++++||+.          .++       ...+....+..+|+|+.|+++.       -..++++...+|+.+
T Consensus       298 kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~se~g~~~  365 (420)
T KOG2096|consen  298 KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFASEDGKDY  365 (420)
T ss_pred             cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEcccCccc
Confidence            99999999986          111       2233345899999999999994       445556655555543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=9.6e-19  Score=159.43  Aligned_cols=210  Identities=16%  Similarity=0.137  Sum_probs=166.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC---CCCEEEEEeCCCeEEEEECCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      ...+.+++.+|+|++||+|..-|.++||++..-+....   ...|...|.++.|+.   ..++|++++.|..|+|||...
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~---~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF---MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhh---eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            56789999999999999999999999999987644333   568888999999986   457899999999999999854


Q ss_pred             Cceeee--cceeecccccceeccC--------------------------------CCCccccEEEEEEcCCCCEEEEEe
Q 017421          201 GTMESL--ANVTEIHDGLDFSAAD--------------------------------DGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       201 ~~~~~~--~~~~~~~~~~~~~~~~--------------------------------~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      .-....  -........+.|....                                ..-....++.|+..|..+++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence            321100  0001111112222221                                111235788999999999999999


Q ss_pred             CCCeEEEEECCCCeEEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccC
Q 017421          247 SDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPC  317 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~  317 (372)
                      .|..|+|||+.+++..+.+++   |++....+... |.|.+|++.+.|.++.++|.-+      ..+|...|+.+.|.+|
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD-PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD  694 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD-PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND  694 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEEC-CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence            999999999999999999874   66788889998 9999999999999999999864      4589999999999999


Q ss_pred             CCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          318 NKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       318 g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      -++|++.+      -|++|.+|.+..
T Consensus       695 CkHlISvs------gDgCIFvW~lp~  714 (1080)
T KOG1408|consen  695 CKHLISVS------GDGCIFVWKLPL  714 (1080)
T ss_pred             chhheeec------CCceEEEEECch
Confidence            99988775      489999998765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.1e-18  Score=140.17  Aligned_cols=221  Identities=14%  Similarity=0.094  Sum_probs=154.1

Q ss_pred             ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421           98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      ..++.|..++++..... .....-.|..++.+++|.+ ...+++|+-||.|+.+|+.++...    ....|..+|.++.+
T Consensus        29 LvssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~  102 (323)
T KOG1036|consen   29 LVSSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEY  102 (323)
T ss_pred             EEEeccCcEEEEeccch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce----eeccCCCceEEEEe
Confidence            34667777888777655 4445557899999999987 456899999999999999988443    36678889999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeec-------ccccce----------ecc--------CCCCccccEEE
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-------HDGLDF----------SAA--------DDGGYSFGIFS  232 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~----------~~~--------~~~~h~~~i~~  232 (372)
                      ++-...+++|+.|+.|++||.+.............       ...+..          ...        ........+.|
T Consensus       103 ~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~  182 (323)
T KOG1036|consen  103 SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC  182 (323)
T ss_pred             eccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence            99888999999999999999985332211111000       000000          000        01223445666


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEeecCC---------CCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          233 LKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHT---------SDVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       233 ~~~sp~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      +++-|++.-+++++-||.|.+=.++..    .....++.|.         -+|++++|+ |--..|+||+.||.|.+||+
T Consensus       183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh-p~~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH-PIHGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec-cccceEEecCCCceEEEccC
Confidence            666666666666666676655444433    2223344442         278999999 77889999999999999998


Q ss_pred             cc------ccCCCCCeeEEEeccCCCeEEEEe
Q 017421          300 LL------LTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       300 ~~------~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      ..      +......|.+++|+.+|..||+++
T Consensus       262 ~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  262 FNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             cchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            63      234556799999999999999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.2e-19  Score=173.37  Aligned_cols=210  Identities=13%  Similarity=0.116  Sum_probs=164.8

Q ss_pred             CCCceEEEEECCCCCE----EEEEeCCCcEEEEeCCC---CeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeEE
Q 017421          123 TTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVH  194 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~----l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  194 (372)
                      -..+.+.++|.+.|..    ||.|..||.|.+||...   +.....+.....|.+.|..+.|++. +++|++|+.+|.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            4567889999998766    88899999999999875   3333344446788899999999995 45999999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCC--C
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--D  271 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~  271 (372)
                      |||+...+.-....  ..            .....|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+.+  .
T Consensus       143 iWDlnn~~tP~~~~--~~------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~  208 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPG--SQ------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH  208 (1049)
T ss_pred             EeccCCcCCCCCCC--CC------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence            99998744311110  00            12358999999875 45678899999999999999888777776554  5


Q ss_pred             eEEEEEeCCCCCEEEEEeCCC---eEEEEecc-------cccCCCCCeeEEEeccCC-CeEEEEeeeeEEEeeceEEEee
Q 017421          272 VNTVCFGDESGHLIYSGSDDN---LCKVNSVL-------LLTRSINPCNKYLFNPCN-KYLIIYLILVISIYSPNILLDN  340 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~-------~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~d~~i~lw~  340 (372)
                      +..++|+|.+...|++++.|.   .|.+||+|       .++.|...|.++.|++.+ ++|+++.      -|++|.+|+
T Consensus       209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg------kD~~ii~wN  282 (1049)
T KOG0307|consen  209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG------KDNRIICWN  282 (1049)
T ss_pred             eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc------CCCCeeEec
Confidence            778999976777888887664   59999987       456899999999999988 5555553      599999999


Q ss_pred             cccceEEEEEee
Q 017421          341 YFLLRTFYSFMV  352 (372)
Q Consensus       341 ~~~~~~~~~~~~  352 (372)
                      ..+++.+..+-.
T Consensus       283 ~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  283 PNTGEVLGELPA  294 (1049)
T ss_pred             CCCceEeeecCC
Confidence            999998887754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.4e-18  Score=152.56  Aligned_cols=207  Identities=14%  Similarity=0.188  Sum_probs=165.7

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      +-.+..|.+++|+.+.+.||++-.+|.|.||++..+......+.. +....|.+++|++ +..|++.+.+|.|..||+-+
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence            334778999999999999999999999999999998776665544 4455799999995 55688888999999999998


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--eecCCCCeEEEEEe
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFG  278 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s  278 (372)
                      ++.......                ..+.|.+++.+|.+..++.|+.||.+..++...++....  +....+.|.++.|+
T Consensus       100 lk~~~~~d~----------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~  163 (691)
T KOG2048|consen  100 LKQKYNIDS----------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN  163 (691)
T ss_pred             CceeEEecC----------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence            876444332                234899999999999999999999888888887765433  33456899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccccc--------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLLLT--------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~~~--------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                       +++..|+.|+.||.|++||..+..              ....-|+++.|-.++. |+++.      -.|+|++||...+
T Consensus       164 -~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgD------S~G~V~FWd~~~g  235 (691)
T KOG2048|consen  164 -PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGD------SAGTVTFWDSIFG  235 (691)
T ss_pred             -CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEec------CCceEEEEcccCc
Confidence             999999999999999999987322              1334578888877654 44442      3588999999999


Q ss_pred             eEEEEEeee
Q 017421          345 RTFYSFMVH  353 (372)
Q Consensus       345 ~~~~~~~~h  353 (372)
                      ..+.++..|
T Consensus       236 TLiqS~~~h  244 (691)
T KOG2048|consen  236 TLIQSHSCH  244 (691)
T ss_pred             chhhhhhhh
Confidence            999888776

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=4.3e-18  Score=139.86  Aligned_cols=199  Identities=14%  Similarity=0.243  Sum_probs=158.0

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeee---cccCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw  196 (372)
                      .+-+.|.|+.|.|++..+++-. |..|.+|++..+..+.....   ..++....++-+|+|  +++.+++. .|+++..|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence            4567999999999999998876 68899999998755322221   123455688999999  78877765 57899999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT  274 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  274 (372)
                      |+++......++  .             .|...|..+.|+|+-+ +|++++.||.|++||.+.. .++..+.+|...|.+
T Consensus       199 D~RT~~~~~sI~--d-------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  199 DLRTMKKNNSIE--D-------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             Eccchhhhcchh--h-------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            999876533332  1             3666899999999865 6688999999999999864 478899999999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEecc-----------------------------------cccCCCCCeeEEEeccCCC
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVL-----------------------------------LLTRSINPCNKYLFNPCNK  319 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~-----------------------------------~~~~~~~~v~~~~~s~~g~  319 (372)
                      +.|+|...++|++|+.|..|.+|...                                   +...|...|++++|+.-..
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            99998888999999999999999863                                   1236778999999999888


Q ss_pred             eEEEEeeeeEEEeeceEEEeecc
Q 017421          320 YLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       320 ~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +++++     -.|||.+.+=++.
T Consensus       344 WiFAS-----LSYDGRviIs~V~  361 (370)
T KOG1007|consen  344 WIFAS-----LSYDGRVIISSVP  361 (370)
T ss_pred             eeEEE-----eccCceEEeecCC
Confidence            88876     2389888876654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.3e-18  Score=150.60  Aligned_cols=200  Identities=16%  Similarity=0.117  Sum_probs=152.9

Q ss_pred             CCceEEEEECCC-------CCEEEEEeCCCcEEEEeCCCCeEEEEee------------------ecccCCcceEEEEEC
Q 017421          124 TSRAYVSQFSAD-------GSLFVAGFQASQIRIYDVERGWKIQKDI------------------LAKSLRWTVTDTSLS  178 (372)
Q Consensus       124 ~~~v~~~~~s~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------~~~~~~~~v~~~~~~  178 (372)
                      +....|++|..-       |+++|.|+.|..|.|||+.--..+....                  ...+|...|.+++|+
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            344467776432       6899999999999999987432221111                  123677788899998


Q ss_pred             CC-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 017421          179 PD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDL  256 (372)
Q Consensus       179 ~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~  256 (372)
                      .. .+.|++|+.|.+|++||+.++++.....                -|...|.++.|+|. ..+|++|+.|++|.+.|+
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence            85 4568899999999999999999866655                25679999999996 578899999999999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEE-EEeeee
Q 017421          257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLI-IYLILV  328 (372)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~-~~~~~~  328 (372)
                      +........-.-.+.|-.++|.|.....++++..||+|+-+|+|       +++.|..+|.++++++....+. +++   
T Consensus       317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---  393 (463)
T KOG0270|consen  317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---  393 (463)
T ss_pred             cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---
Confidence            95433222223457899999997777888899999999999998       4568999999999998866544 433   


Q ss_pred             EEEeeceEEEeecccce
Q 017421          329 ISIYSPNILLDNYFLLR  345 (372)
Q Consensus       329 ~~~~d~~i~lw~~~~~~  345 (372)
                         -|+.+++|++...+
T Consensus       394 ---~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  394 ---TDKVVKLWKFDVDS  407 (463)
T ss_pred             ---ccceEEEEeecCCC
Confidence               47888999876544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.4e-17  Score=136.63  Aligned_cols=207  Identities=15%  Similarity=0.118  Sum_probs=145.2

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw  196 (372)
                      ..+|..-|.++.|.+-|+++|+|+.|++|+|||...+. ........+.|.+.|..+.|.+  -|+.+++++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            35788999999999999999999999999999975432 2233334668888999999977  58999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC------eEEEEee--
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN------KLSLRIL--  266 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~------~~~~~~~--  266 (372)
                      .-................  .     .......|+.+.|.|.  |-.|++++.||.++||+.-..      +....+.  
T Consensus        89 EE~~~~~~~~~~~Wv~~t--t-----l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRT--T-----LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             eecccccccccceeEEEE--E-----eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence            863221111000000000  0     0013358999999995  667899999999999986543      2223332  


Q ss_pred             -----cCCCCeEEEEEeCC--CCCEEEEEeCC-----CeEEEEecc----------cccCCCCCeeEEEeccC-C---Ce
Q 017421          267 -----AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVNSVL----------LLTRSINPCNKYLFNPC-N---KY  320 (372)
Q Consensus       267 -----~~~~~v~~~~~sp~--~~~~l~s~~~d-----g~i~vwd~~----------~~~~~~~~v~~~~~s~~-g---~~  320 (372)
                           .+..+..|+.|+|.  ...+||+|+.+     +.+.||...          ++.+|..+|+.++|.|+ |   ..
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence                 35567889999832  24578888765     478888764          45589999999999998 3   45


Q ss_pred             EEEEeeeeEEEee
Q 017421          321 LIIYLILVISIYS  333 (372)
Q Consensus       321 l~~~~~~~~~~~d  333 (372)
                      ||+++.+.++||.
T Consensus       242 lAvA~kDgv~I~~  254 (361)
T KOG2445|consen  242 LAVATKDGVRIFK  254 (361)
T ss_pred             EEEeecCcEEEEE
Confidence            6777633344443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=4.5e-18  Score=155.14  Aligned_cols=226  Identities=18%  Similarity=0.164  Sum_probs=163.6

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-----------CCEEEEEeCCCeEEEE
Q 017421          128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVHIV  196 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~vw  196 (372)
                      -++.|++....|.+...|..++|||++.-..+.+......|..-|+++.--|-           ...+++++.|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            35689999999999999999999999986655554445556656666655441           2348899999999999


Q ss_pred             ECCCCceeeecc---eeecccccceeccC------------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421          197 DVGSGTMESLAN---VTEIHDGLDFSAAD------------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD  255 (372)
Q Consensus       197 d~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd  255 (372)
                      |+..+....+..   +......+.+...+                  .-+....+.+++.+|+|++|++|...|+++||+
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            998633221110   00000001111110                  013456899999999999999999999999999


Q ss_pred             CCCCeEEEEeecCCCCeEEEEEeCCC--CCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCC--CeEE-E
Q 017421          256 LEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCN--KYLI-I  323 (372)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g--~~l~-~  323 (372)
                      +..-+....+.+|+..|.|+.|+-|+  .++||+++.|..|+|||+.       ++.+|...|+++.|..+|  ..++ +
T Consensus       488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc  567 (1080)
T KOG1408|consen  488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC  567 (1080)
T ss_pred             ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence            99988888889999999999998443  4689999999999999985       566788888888887766  2232 3


Q ss_pred             EeeeeE----------------------------------------EEeeceEEEeecccceEEEEEeee
Q 017421          324 YLILVI----------------------------------------SIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       324 ~~~~~~----------------------------------------~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      |.|+.+                                        ...|.+|++++..+|+..++|.+-
T Consensus       568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs  637 (1080)
T KOG1408|consen  568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS  637 (1080)
T ss_pred             cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence            323211                                        013678999999999999999763

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.79  E-value=2.4e-18  Score=150.87  Aligned_cols=205  Identities=15%  Similarity=0.180  Sum_probs=161.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      ..-.|++......++++|+..+.|+|||++.....+   .+++|+..|+++.++....+|++++..|.|.|..+.++...
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence            355666666667899999999999999999553333   37789999999999999999999999999999999887643


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEEeCCCC
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESG  282 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~  282 (372)
                      ..+...               ....|.-+.|+|..++ |.+++.+|.|.+||+....+++.+ ..|..+...++|+|.+.
T Consensus       157 t~f~~~---------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne  221 (673)
T KOG4378|consen  157 TTFTID---------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE  221 (673)
T ss_pred             cceecC---------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence            333211               1235778999998765 467888999999999977766554 47999999999998888


Q ss_pred             CEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce-EEEEEeee
Q 017421          283 HLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVH  353 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h  353 (372)
                      .+|++.+.|..|.+||.+.-.     ....+.+.++|.++|.+|++|.      -.|.|..||....+ ++...-+|
T Consensus       222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~------s~G~~i~YD~R~~k~Pv~v~sah  292 (673)
T KOG4378|consen  222 ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN------SKGELIAYDMRSTKAPVAVRSAH  292 (673)
T ss_pred             ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec------CCceEEEEecccCCCCceEeeec
Confidence            999999999999999998432     4567889999999999999995      35666666665443 44444444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=7.5e-18  Score=151.89  Aligned_cols=229  Identities=16%  Similarity=0.132  Sum_probs=160.7

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw  196 (372)
                      .....|...|..+.|.|-...|++++.|.++++||+.+....... ...+|...|.+++|.| +...|++|+.||.|.||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            445679999999999996678899999999999999988666543 4678999999999999 45678899999999999


Q ss_pred             ECCCCceeeeccee----ecccccceecc--------CCCCccccEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCe
Q 017421          197 DVGSGTMESLANVT----EIHDGLDFSAA--------DDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANK  260 (372)
Q Consensus       197 d~~~~~~~~~~~~~----~~~~~~~~~~~--------~~~~h~~~i~~---~~~sp~~~~l~s~s~-dg~i~iwd~~~~~  260 (372)
                      |++-..........    ..+.+-. .+.        ....+...|.+   +.+..|...||+++. |+.|+|||+++..
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCC-CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            99765422111111    1111100 000        01123344444   445567788988877 9999999999765


Q ss_pred             EEEE--------eecC---CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccccC-----CCC-----CeeEEEeccCCC
Q 017421          261 LSLR--------ILAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTR-----SIN-----PCNKYLFNPCNK  319 (372)
Q Consensus       261 ~~~~--------~~~~---~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~-----~v~~~~~s~~g~  319 (372)
                      ....        +..|   .-.+.++... ..|.+|++.+.|+.|.+|+++.+..     +..     --..-..+|++.
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~  330 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC  330 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEec-CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence            3322        2223   2356777777 7788888888899999999985431     111     112224689999


Q ss_pred             eEEEEeeeeEEEeeceEEEeecccce-EEEEEeeeEE
Q 017421          320 YLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVHIL  355 (372)
Q Consensus       320 ~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h~~  355 (372)
                      +|++++      +|...++|.+.+.. ....+.||..
T Consensus       331 ~l~SgS------sd~~ayiw~vs~~e~~~~~l~Ght~  361 (720)
T KOG0321|consen  331 SLLSGS------SDEQAYIWVVSSPEAPPALLLGHTR  361 (720)
T ss_pred             eEeccC------CCcceeeeeecCccCChhhhhCcce
Confidence            999998      89999999988765 3566777754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=4.8e-18  Score=154.40  Aligned_cols=220  Identities=13%  Similarity=0.140  Sum_probs=171.3

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ..+.||...|..++|+|.|.+|++.+.|.+-++|-.- ..........+.-|...++|++|-+....+++|.....+++|
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF  434 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF  434 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence            4568999999999999999999999999999999765 222334444456777789999999876778888888899999


Q ss_pred             ECCCCceeeecc---------------------------ee--eccccc----------cee------ccC---------
Q 017421          197 DVGSGTMESLAN---------------------------VT--EIHDGL----------DFS------AAD---------  222 (372)
Q Consensus       197 d~~~~~~~~~~~---------------------------~~--~~~~~~----------~~~------~~~---------  222 (372)
                      +....-...+..                           ..  ....+.          ...      |..         
T Consensus       435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL  514 (764)
T KOG1063|consen  435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL  514 (764)
T ss_pred             cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence            852111000000                           00  000000          000      000         


Q ss_pred             ------CCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421          223 ------DGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       223 ------~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d  291 (372)
                            ..||...|++++.+|+++++|++...     ..|++|+..+......+.+|.-.|+.++|| |||++|++.+.|
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRD  593 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRD  593 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecC
Confidence                  04899999999999999999988753     359999999999888999999999999999 999999999999


Q ss_pred             CeEEEEecc----------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          292 NLCKVNSVL----------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       292 g~i~vwd~~----------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +++.+|...          ..+.|...|+.+.|+|++.++++++      -|..+++|.....
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~~  650 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPDL  650 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccCc
Confidence            999999874          3568999999999999999999886      6889999988777

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=7.6e-18  Score=150.82  Aligned_cols=243  Identities=14%  Similarity=0.112  Sum_probs=167.7

Q ss_pred             CCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE--EEEEeCC
Q 017421          113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYASMS  190 (372)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d  190 (372)
                      |......+.+|++.|.++...|.|.+|++|+.||+|+||.+.+++++.......    .|.+++|+|.+..  |+++-..
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEecC
Confidence            445556789999999999999999999999999999999999998888654433    5888888885542  3333222


Q ss_pred             --------------------------------CeEEEEECC------CCceeeecce-----eeccc-ccc---eeccC-
Q 017421          191 --------------------------------PIVHIVDVG------SGTMESLANV-----TEIHD-GLD---FSAAD-  222 (372)
Q Consensus       191 --------------------------------g~i~vwd~~------~~~~~~~~~~-----~~~~~-~~~---~~~~~-  222 (372)
                                                      +.+..|.-.      .+-+..+...     ...|. |--   ..+.. 
T Consensus       465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence                                            122233321      1101111110     00010 000   00000 


Q ss_pred             -----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421          223 -----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  285 (372)
Q Consensus       223 -----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l  285 (372)
                                       -..-.+.|.++.|+|...+|++++. ..|+|||+.....+..+......|..++.+ |.|..|
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnl  622 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNL  622 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeE
Confidence                             0112357889999999999988885 679999999887777776677789999999 999999


Q ss_pred             EEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEee-eeEEEeeceEEEeec--ccceEEEEEeeeEE
Q 017421          286 YSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYLI-LVISIYSPNILLDNY--FLLRTFYSFMVHIL  355 (372)
Q Consensus       286 ~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~d~~i~lw~~--~~~~~~~~~~~h~~  355 (372)
                      +.|+.|+.++.+|+.       ++..|...+++++|++.-.+++++++ +.+.++-+.|+--=+  ..--+++-+.+|..
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~  702 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK  702 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence            999999999999986       45689999999999999999999864 555555555431111  11236777888876


Q ss_pred             E--eeecc
Q 017421          356 F--SGYLH  361 (372)
Q Consensus       356 ~--~~~~~  361 (372)
                      .  .|.|+
T Consensus       703 ~~~~gVLd  710 (733)
T KOG0650|consen  703 TNDLGVLD  710 (733)
T ss_pred             ecccceEe
Confidence            6  46663

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=144.91  Aligned_cols=194  Identities=11%  Similarity=0.140  Sum_probs=155.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCC-EEEEEeCCCeEEEEECC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVG  199 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~  199 (372)
                      -.+.|+++.|+|....|++++.|++++||.+....  .+..   ..-...+|.+..|.|+|. .+++++....++.||+.
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS---~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS---IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee---eeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            46789999999999999999999999999987542  2222   222334899999999999 88999999999999999


Q ss_pred             CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421          200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  279 (372)
                      +.+...+.......             ...+.....+|++++|+..+..|.|.+....+++.+.+++ -.+.|..++|+ 
T Consensus       289 ~ak~~k~~~~~g~e-------------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs-  353 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVE-------------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS-  353 (514)
T ss_pred             ccccccccCCCCcc-------------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-
Confidence            88865444322111             1256677889999999999999999999999999988887 56889999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEee-eeEEEeec
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLI-LVISIYSP  334 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~d~  334 (372)
                      .+++.|++++.+|.|.+||++...       ...-.-++++.+++|.++|+|++ +.+.|||+
T Consensus       354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence            999999999999999999998432       22223477888999999999974 44666663

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.78  E-value=4.4e-17  Score=143.28  Aligned_cols=215  Identities=14%  Similarity=0.129  Sum_probs=161.7

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE----------------------
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----------------------  161 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------  161 (372)
                      ..+.+|..-...-......|.+.|.+++...+|.+|- |+.|+.|..||-.-. .++.                      
T Consensus       267 G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~-k~r~~elPe~~G~iRtv~e~~~di~v  344 (626)
T KOG2106|consen  267 GNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYR-KLRETELPEQFGPIRTVAEGKGDILV  344 (626)
T ss_pred             ceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccccc-ccccccCchhcCCeeEEecCCCcEEE
Confidence            3455665544333444458999999999999998554 999999999983211 1100                      


Q ss_pred             ----------------eeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCC
Q 017421          162 ----------------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG  225 (372)
Q Consensus       162 ----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
                                      .....+|....+.++.+|+..++++++.|+.+++|+  ..+.......                
T Consensus       345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~----------------  406 (626)
T KOG2106|consen  345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII----------------  406 (626)
T ss_pred             eeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe----------------
Confidence                            011236666788999999999999999999999999  3333222221                


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----
Q 017421          226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----  301 (372)
Q Consensus       226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----  301 (372)
                       ..++.|+.|+|.| .+|.|+..|...+.|.++...+..-.. ..++++++|+ |+|.+||.|+.|+.|++|-+..    
T Consensus       407 -~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys-p~G~~lAvgs~d~~iyiy~Vs~~g~~  482 (626)
T KOG2106|consen  407 -EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYS-PDGAFLAVGSHDNHIYIYRVSANGRK  482 (626)
T ss_pred             -cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEc-CCCCEEEEecCCCeEEEEEECCCCcE
Confidence             1378999999999 999999999999999998655544444 8899999999 9999999999999999998862    


Q ss_pred             ----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          302 ----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       302 ----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                          .+.+..+|+.+.|++|++++.+-+      -|-.|..|.....+.+.
T Consensus       483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S------~d~eiLyW~~~~~~~~t  527 (626)
T KOG2106|consen  483 YSRVGKCSGSPITHLDWSSDSQFLVSNS------GDYEILYWKPSECKQIT  527 (626)
T ss_pred             EEEeeeecCceeEEeeecCCCceEEecc------CceEEEEEccccCcccc
Confidence                224458999999999999998775      36678888555444443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.78  E-value=1.1e-17  Score=145.41  Aligned_cols=224  Identities=15%  Similarity=0.122  Sum_probs=164.9

Q ss_pred             ceeEeeeee---C-CCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          104 CCHMLSRYL---P-VNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       104 ~~~~~~~~~---~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      ..+-+|++-   + ......+..|.++|.++.|+| +-..+++.++||+|+.-|++...... ..........+.++.|+
T Consensus       210 G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~-v~s~~~d~~~fs~~d~~  288 (498)
T KOG4328|consen  210 GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE-VLSLDTDNIWFSSLDFS  288 (498)
T ss_pred             CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH-HhhcCccceeeeecccc
Confidence            457788883   2 223566789999999999999 55778999999999999998763221 11122233457888999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~  257 (372)
                      .+...++.+..=|.+.+||.+++....  ....             -|...|+.++++|.. .+||+++.|++++|||++
T Consensus       289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~-------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R  353 (498)
T KOG4328|consen  289 AESRSVLFGDNVGNFNVIDLRTDGSEY--ENLR-------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLR  353 (498)
T ss_pred             CCCccEEEeecccceEEEEeecCCccc--hhhh-------------hhhcccceeecCCCCchheeecccCcceeeeehh
Confidence            988888888887899999999876421  1111             255589999999976 567999999999999998


Q ss_pred             CCe----EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc---------CCC----C--CeeEEEeccCC
Q 017421          258 ANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------RSI----N--PCNKYLFNPCN  318 (372)
Q Consensus       258 ~~~----~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------~~~----~--~v~~~~~s~~g  318 (372)
                      .-.    ++.....|...|.+..|||.+|. |++.+.|..|+|||...+.         .|.    .  ......|.|+.
T Consensus       354 ~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~  432 (498)
T KOG4328|consen  354 QLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY  432 (498)
T ss_pred             hhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc
Confidence            532    22333469999999999955555 9999999999999984111         111    1  23456899999


Q ss_pred             CeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          319 KYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      .+++++.      |...|-++|-..++.+-.+
T Consensus       433 ~li~vg~------~~r~IDv~~~~~~q~v~el  458 (498)
T KOG4328|consen  433 NLIVVGR------YPRPIDVFDGNGGQMVCEL  458 (498)
T ss_pred             cEEEEec------cCcceeEEcCCCCEEeeec
Confidence            9998886      5666778888777766554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.4e-17  Score=139.84  Aligned_cols=191  Identities=13%  Similarity=0.144  Sum_probs=147.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      ..+|++...|.|++||..+++.+..   .++++..+..+.|..  ....+.+++.||.|++||++.............. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence            5688899999999999999877766   556666677888876  4567889999999999999987654444322211 


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeE-EEEe-ecCCCCeEEEEEeCCCCCEEEEE
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLRI-LAHTSDVNTVCFGDESGHLIYSG  288 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~sp~~~~~l~s~  288 (372)
                                  ..+..+++.+-.++.+++|+.    +-.|.+||++..+. +..+ ..|...|++++|+|.+.++|++|
T Consensus       117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG  184 (376)
T KOG1188|consen  117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG  184 (376)
T ss_pred             ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence                        136777887767888888864    56799999998775 4444 47999999999999999999999


Q ss_pred             eCCCeEEEEecccc---------cCCCCCeeEEEeccCC--CeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          289 SDDNLCKVNSVLLL---------TRSINPCNKYLFNPCN--KYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       289 ~~dg~i~vwd~~~~---------~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      |.||.|.+||++.-         -.+...|..+.|..++  +.....       ...+..+|++..+.+...+
T Consensus       185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-------H~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-------HMETFAIYELEDGSEETWL  250 (376)
T ss_pred             cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-------ccCceeEEEccCCChhhcc
Confidence            99999999999732         2567789999999988  544444       4667778888777765544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=6e-17  Score=133.29  Aligned_cols=219  Identities=12%  Similarity=0.109  Sum_probs=165.8

Q ss_pred             ccccCCceeEeeeeeCCCCCcc---------ccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc
Q 017421           98 RFSAADCCHMLSRYLPVNGPWP---------VDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKS  167 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  167 (372)
                      .+...++.+++|+.-+......         -..+..++++.+|+. +-++|.+.+-|.+..|||++++..-.....+-.
T Consensus       115 lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  115 LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence            4566778899999885433222         245678999999988 678899999999999999998733112223457


Q ss_pred             CCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEE
Q 017421          168 LRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAG  245 (372)
Q Consensus       168 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~  245 (372)
                      |..+|..++|...+ +.+++.+.||.++++|++.-....+..-          ..   ....+...++|++. -+++|+-
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE----------~p---~~~~pLlRLswnkqDpnymATf  261 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE----------DP---SPSTPLLRLSWNKQDPNYMATF  261 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec----------CC---CCCCcceeeccCcCCchHHhhh
Confidence            88899999999854 5688999999999999987653222211          10   11347888999885 4677776


Q ss_pred             eCC-CeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----------CCCCCeeEE
Q 017421          246 SSD-DCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----------RSINPCNKY  312 (372)
Q Consensus       246 s~d-g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~v~~~  312 (372)
                      ..| ..|.|.|++.. .++..+.+|.+.|+.++|.|..+..|++++.|....+||+....           .....|+.+
T Consensus       262 ~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi  341 (364)
T KOG0290|consen  262 AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQI  341 (364)
T ss_pred             hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeee
Confidence            555 46999999865 57888999999999999998889999999999999999997433           245678999


Q ss_pred             EeccC-CCeEEEEeeeeE
Q 017421          313 LFNPC-NKYLIIYLILVI  329 (372)
Q Consensus       313 ~~s~~-g~~l~~~~~~~~  329 (372)
                      .|++. +.+++++.++.+
T Consensus       342 ~Ws~~~~Dwiai~~~kkl  359 (364)
T KOG0290|consen  342 QWSSSQPDWIAICFGKKL  359 (364)
T ss_pred             eecccCCCEEEEEecCee
Confidence            99964 788998854443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=1.5e-17  Score=142.13  Aligned_cols=199  Identities=13%  Similarity=0.085  Sum_probs=147.3

Q ss_pred             CCCEEEEE---eCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecce
Q 017421          135 DGSLFVAG---FQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANV  209 (372)
Q Consensus       135 ~~~~l~~~---~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  209 (372)
                      +.++||+.   +..|...|.-+.. |+.-...-...+|.++|..++|+| +...||+|+.|.+|.||++-.+....... 
T Consensus        43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-  121 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-  121 (472)
T ss_pred             CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-
Confidence            45555542   3344555555543 333333445679999999999999 77789999999999999997665422111 


Q ss_pred             eecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 017421          210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG  288 (372)
Q Consensus       210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~  288 (372)
                       ...       ....||...|.-++|+|.. +.|++++.|.+|.+||+.+++.+.++. |...|+++.|+ .+|.+|++.
T Consensus       122 -epv-------v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~Tt  191 (472)
T KOG0303|consen  122 -EPV-------VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTT  191 (472)
T ss_pred             -cce-------EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeee
Confidence             000       0012688899999999974 678899999999999999999988887 99999999999 999999999


Q ss_pred             eCCCeEEEEeccccc------CC-CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          289 SDDNLCKVNSVLLLT------RS-INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       289 ~~dg~i~vwd~~~~~------~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      +.|..|||||.++..      .| ......+.|-.+|.++.++   +-+.-+.++-|||..+..+-
T Consensus       192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG---fsr~seRq~aLwdp~nl~eP  254 (472)
T KOG0303|consen  192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG---FSRMSERQIALWDPNNLEEP  254 (472)
T ss_pred             cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec---cccccccceeccCcccccCc
Confidence            999999999998543      23 2345667888888855555   22445678888887666543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=4.4e-17  Score=135.93  Aligned_cols=244  Identities=16%  Similarity=0.126  Sum_probs=172.4

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCC------CCccc-------cCCCCceEEEEEC-------CCCCEEEEEeCCCcEE
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVN------GPWPV-------DQTTSRAYVSQFS-------ADGSLFVAGFQASQIR  149 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~v~~~~~s-------~~~~~l~~~~~dg~i~  149 (372)
                      +++++.-   .+.+.++.+|++.+.-      .+..+       ......|+..+|-       |+..++++.+.+.-|+
T Consensus        57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh  136 (406)
T KOG2919|consen   57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH  136 (406)
T ss_pred             eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence            4555532   5556677777765421      11111       1235667777774       6788999999999999


Q ss_pred             EEeCCCCeEEEEeeecccCCc---ceEEEEECCCCCEEEEEeCCCeEEEEEC-CCCceeeecceeecccccceeccCCCC
Q 017421          150 IYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGG  225 (372)
Q Consensus       150 vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
                      +||.-+++..... ....|..   ...+++|+|||.+|++| ....|+++|+ +.|..-........         ...+
T Consensus       137 ~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~---------~k~g  205 (406)
T KOG2919|consen  137 LWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK---------GKFG  205 (406)
T ss_pred             eeeccccccccch-hhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc---------cccc
Confidence            9999998544332 2333433   34689999999999876 5678999999 55543222221111         0114


Q ss_pred             ccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccc--
Q 017421          226 YSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLL--  301 (372)
Q Consensus       226 h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~--  301 (372)
                      ..+.|.+++|+|-. +.++.|+....+-||.-..+.++..+-+|.+.|+.++|. ++|+.|++|. .|..|..||+|.  
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec-cCcCeecccccCCCeEEEEeehhcc
Confidence            56689999999954 588999999999999988889999999999999999999 9999999997 478899999983  


Q ss_pred             -----ccCCCC---CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc-ceEEEEEeeeE
Q 017421          302 -----LTRSIN---PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL-LRTFYSFMVHI  354 (372)
Q Consensus       302 -----~~~~~~---~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~-~~~~~~~~~h~  354 (372)
                           +..|..   .-.-+...|+|++|+++.      -|+.|++||... +.++..+..|.
T Consensus       285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~------tdG~V~vwdlk~~gn~~sv~~~~s  340 (406)
T KOG2919|consen  285 DPVYALERHVGDTNQRILFDLDPKGEILASGD------TDGSVRVWDLKDLGNEVSVTGNYS  340 (406)
T ss_pred             chhhhhhhhccCccceEEEecCCCCceeeccC------CCccEEEEecCCCCCccccccccc
Confidence                 233333   223345578999999984      378888888877 55555555443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2e-18  Score=165.15  Aligned_cols=223  Identities=15%  Similarity=0.092  Sum_probs=163.5

Q ss_pred             CCceeEeeeeeCC---C---CCccccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421          102 ADCCHMLSRYLPV---N---GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       102 ~~~~~~~~~~~~~---~---~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  174 (372)
                      .|..+.+|+....   .   .......|.+.|.+++|++.. ++||+|+.||.|.|||+.+.+.....- .....+.|.+
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~  166 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKC  166 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceE
Confidence            3445666666553   1   123457899999999999955 599999999999999998743322211 2224457999


Q ss_pred             EEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCC---
Q 017421          175 TSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDD---  249 (372)
Q Consensus       175 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg---  249 (372)
                      ++|+..- ..|++++.+|.+.|||++..+.  +..+....            ....+..++|+|++ ..|+++++|.   
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~------------~~~~~S~l~WhP~~aTql~~As~dd~~P  232 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTP------------GRMHCSVLAWHPDHATQLLVASGDDSAP  232 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccccCCCc--ccccccCC------------CccceeeeeeCCCCceeeeeecCCCCCc
Confidence            9999854 4577888899999999998754  22222211            11357899999986 4566666543   


Q ss_pred             eEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCC-eE
Q 017421          250 CIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNK-YL  321 (372)
Q Consensus       250 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~-~l  321 (372)
                      .|.+||++.- .+++.+.+|...|.++.|++.|.++|++++.|+.|.+|+..+.+      ....++..+.|+|..- .+
T Consensus       233 viqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~  312 (1049)
T KOG0307|consen  233 VIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVM  312 (1049)
T ss_pred             eeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchh
Confidence            5999999854 46777889999999999997788999999999999999998633      4567899999999876 44


Q ss_pred             EEEeeeeEEEeeceEEEeecccce
Q 017421          322 IIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      ++++      +|+.|.++.+..+.
T Consensus       313 A~as------fdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  313 AAAS------FDGKISIYSLQGTD  330 (1049)
T ss_pred             hhhe------eccceeeeeeecCC
Confidence            4443      57777777665554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=9.2e-18  Score=140.21  Aligned_cols=219  Identities=10%  Similarity=0.068  Sum_probs=163.5

Q ss_pred             eeEeeeeeCCCCCccccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE
Q 017421          105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH  183 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (372)
                      .+++.+....+....+.+|...|+.+.++|+. +++++++.|..|++|++++..++..+-...+|...|.++.|++++.+
T Consensus       116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~  195 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR  195 (385)
T ss_pred             EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe
Confidence            34566666666677889999999999999965 78899999999999999999998887778899999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecceeec----cc-------ccceec-cCCCCccccEEEEEEcCCCCEEEEEeCCCeE
Q 017421          184 LVYASMSPIVHIVDVGSGTMESLANVTEI----HD-------GLDFSA-ADDGGYSFGIFSLKFSTDGRELVAGSSDDCI  251 (372)
Q Consensus       184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~-------~~~~~~-~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i  251 (372)
                      |++++.|.++++|++...+..........    ..       ...|.. ....-|...|.|+.|-  |.++++-+.++.|
T Consensus       196 i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI  273 (385)
T KOG1034|consen  196 IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAI  273 (385)
T ss_pred             eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceE
Confidence            99999999999999985443222111100    00       000100 0224588888888887  6789998889999


Q ss_pred             EEEECC-CCe-------------EEEEeecCCCCeEEEEEe-CCCCCEEEEEeCCCeEEEEeccccc----------CCC
Q 017421          252 YVYDLE-ANK-------------LSLRILAHTSDVNTVCFG-DESGHLIYSGSDDNLCKVNSVLLLT----------RSI  306 (372)
Q Consensus       252 ~iwd~~-~~~-------------~~~~~~~~~~~v~~~~~s-p~~~~~l~s~~~dg~i~vwd~~~~~----------~~~  306 (372)
                      ..|-.. -.+             .+..+......|.-+.|. .+-++.||.|...|.|.+||++...          ...
T Consensus       274 ~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~  353 (385)
T KOG1034|consen  274 VCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG  353 (385)
T ss_pred             EEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc
Confidence            999762 111             233344455667666554 2668899999999999999998433          234


Q ss_pred             CCeeEEEeccCCCeEEEEe
Q 017421          307 NPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       307 ~~v~~~~~s~~g~~l~~~~  325 (372)
                      ..|...+|+.||..|+...
T Consensus       354 ~tVRQ~sfS~dgs~lv~vc  372 (385)
T KOG1034|consen  354 STVRQTSFSRDGSILVLVC  372 (385)
T ss_pred             ceeeeeeecccCcEEEEEe
Confidence            5689999999999887653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=2.6e-17  Score=149.75  Aligned_cols=186  Identities=19%  Similarity=0.226  Sum_probs=146.3

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  191 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  191 (372)
                      ...+.||...|++++.+|+|+++|+++...     .|++|+..+-....   .+.+|.-.|+.++|+||+++|++.+.|.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eecccceEEEEEEECCCCcEEEEeecCc
Confidence            356789999999999999999999987653     58999987654433   3678988999999999999999999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEE--eec
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLR--ILA  267 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~--~~~  267 (372)
                      ++.+|...........          |..  .+.|+-.|....|+|++.+|+|+|.|.+|++|.....  +.+..  ...
T Consensus       595 t~sl~~~~~~~~~e~~----------fa~--~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~  662 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFR----------FAC--LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK  662 (764)
T ss_pred             eEEeeeeecccchhhh----------hcc--ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence            9999998544321111          000  1257789999999999999999999999999999877  43333  235


Q ss_pred             CCCCeEEEEEeCCCCC----EEEEEeCCCeEEEEecc------c------------ccCCCCCeeEEEeccC
Q 017421          268 HTSDVNTVCFGDESGH----LIYSGSDDNLCKVNSVL------L------------LTRSINPCNKYLFNPC  317 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~----~l~s~~~dg~i~vwd~~------~------------~~~~~~~v~~~~~s~~  317 (372)
                      +..+|++++|.|-+..    .+++|-..|.|.+|...      +            ...+...|..+.|.|.
T Consensus       663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            7889999999864443    78889899999999854      1            1156677899999975

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=3.4e-18  Score=154.02  Aligned_cols=201  Identities=17%  Similarity=0.154  Sum_probs=147.4

Q ss_pred             ECCCCCEEEE--EeCCCcEEEEeCCCCeEEEEee-ecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          132 FSADGSLFVA--GFQASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       132 ~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      |+.+..++|+  .+..|.|-||++.....+..-. ...-....|+.+.|.| |...|++++.||.|++|.+..+......
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            4445555554  4556899999998653333211 1112234699999999 8889999999999999999876643332


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEE
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY  286 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~  286 (372)
                      ......-         .+|...|+++.|+|= ...|++++.|.+|++||+.+++....+.+|.+.|..++|+ |+|+.++
T Consensus       667 ~tPe~~l---------t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWS-pdGr~~A  736 (1012)
T KOG1445|consen  667 MTPEKIL---------TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWS-PDGRRIA  736 (1012)
T ss_pred             CCcceee---------ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEEC-CCCccee
Confidence            2221111         157789999999994 4688999999999999999999989999999999999999 9999999


Q ss_pred             EEeCCCeEEEEeccccc----CC----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          287 SGSDDNLCKVNSVLLLT----RS----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       287 s~~~dg~i~vwd~~~~~----~~----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +.+.||+|++|..+...    ..    ...-..+.|..+|+++++..-.  +....+|.+||+.+.
T Consensus       737 tVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd--k~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  737 TVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD--KSSERQVQMYDAQTL  800 (1012)
T ss_pred             eeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc--ccchhhhhhhhhhhc
Confidence            99999999999987432    11    2334678999999998765311  112355666665543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=4.5e-17  Score=142.93  Aligned_cols=200  Identities=17%  Similarity=0.137  Sum_probs=162.4

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+...++.+|++........+.+|...|+++.++....+||+++..|.|.|..+.++.....+  ..+....|.-+.|+|
T Consensus        97 gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f--~~~sgqsvRll~ys~  174 (673)
T KOG4378|consen   97 GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF--TIDSGQSVRLLRYSP  174 (673)
T ss_pred             cCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce--ecCCCCeEEEeeccc
Confidence            455567889998866666778999999999999999999999999999999999887544332  223344577999999


Q ss_pred             CCCE-EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 017421          180 DQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       180 ~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~  257 (372)
                      ..++ |.+++.+|.|.+||+......  .....             .|..+...|+|+|.. .+|++.+.|..|.+||++
T Consensus       175 skr~lL~~asd~G~VtlwDv~g~sp~--~~~~~-------------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  175 SKRFLLSIASDKGAVTLWDVQGMSPI--FHASE-------------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             ccceeeEeeccCCeEEEEeccCCCcc--cchhh-------------hccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            7665 567889999999999876542  22222             477899999999965 567888999999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCC
Q 017421          258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCN  318 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g  318 (372)
                      .......+. ...+...++|. ++|.+|+.|+..|.|..||+|..       ..|...|++++|-|.-
T Consensus       240 s~~s~~~l~-y~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRLT-YSHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccceee-ecCCcceeeec-CCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            877666665 55789999999 99999999999999999999843       3788899999998864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=6e-17  Score=135.00  Aligned_cols=196  Identities=16%  Similarity=0.136  Sum_probs=156.1

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC-CCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG  201 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~  201 (372)
                      ...+|+|.+|++|+..+|++.....|.||.............+..|...|+.+.|+|..+.|++++.|..-+||.. ..+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            4678999999999999999999999999998877655566668889999999999999999999999999999998 444


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE----EEEeecCCCCeEEEEE
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNTVCF  277 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~  277 (372)
                      +-.....+..              +...++++.|+|.++.|++|+....|.||-.+..+.    .+.-+.+...|++++|
T Consensus        89 ~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW  154 (361)
T KOG1523|consen   89 TWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW  154 (361)
T ss_pred             eeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence            4333333322              334899999999999999999999999988764331    1222356778999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEecc------------------------cccCCCCCeeEEEeccCCCeEE-EEeeeeEEEe
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVL------------------------LLTRSINPCNKYLFNPCNKYLI-IYLILVISIY  332 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~------------------------~~~~~~~~v~~~~~s~~g~~l~-~~~~~~~~~~  332 (372)
                      + |++-+|++|+.|+.+||+..-                        ......+.+..+.|+|+|..|+ ++.+..+.+-
T Consensus       155 h-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  155 H-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             c-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            9 999999999999999999852                        0113457899999999999988 4544444443


Q ss_pred             e
Q 017421          333 S  333 (372)
Q Consensus       333 d  333 (372)
                      |
T Consensus       234 d  234 (361)
T KOG1523|consen  234 D  234 (361)
T ss_pred             e
Confidence            3

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=8.1e-17  Score=149.72  Aligned_cols=232  Identities=13%  Similarity=0.065  Sum_probs=172.5

Q ss_pred             eeEeeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEE---EEeeecccCCcceEEEEECCC
Q 017421          105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~  180 (372)
                      ...+|.+.....|.....-...|.|++|+| +..++|.|+.+|+|.+||+..+...   ........|..+++.+.|..+
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence            567888887777777777789999999999 6678889999999999999876442   122234578889999999875


Q ss_pred             CCE--EEEEeCCCeEEEEECCCCceeeecceeec-------------ccccceecc------------------------
Q 017421          181 QRH--LVYASMSPIVHIVDVGSGTMESLANVTEI-------------HDGLDFSAA------------------------  221 (372)
Q Consensus       181 ~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~~~~------------------------  221 (372)
                      ..-  +++++.||.|..|+++.-...........             ...+.|.+.                        
T Consensus       303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~  382 (555)
T KOG1587|consen  303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP  382 (555)
T ss_pred             CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence            544  99999999999998754332100000000             000111111                        


Q ss_pred             ----------CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 017421          222 ----------DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD  290 (372)
Q Consensus       222 ----------~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~  290 (372)
                                ....|.++|+.+.++|=+..++..+.|.+|+||... ...++..+..+...|++++|||.....|+++..
T Consensus       383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~  462 (555)
T KOG1587|consen  383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG  462 (555)
T ss_pred             cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence                      112477899999999987666655569999999988 667777777788889999999777889999999


Q ss_pred             CCeEEEEeccc--------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          291 DNLCKVNSVLL--------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       291 dg~i~vwd~~~--------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      ||.|.+||+..        ........+.+.|+++|+.|++|.      +.|++.+|++.
T Consensus       463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd------~~G~~~~~~l~  516 (555)
T KOG1587|consen  463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD------ANGTTHILKLS  516 (555)
T ss_pred             CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec------CCCcEEEEEcC
Confidence            99999999962        223345567788999999999996      57888888874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=2.8e-17  Score=140.87  Aligned_cols=200  Identities=20%  Similarity=0.192  Sum_probs=151.0

Q ss_pred             CCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCC------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       124 ~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ..+|+.+.|.++.. .|++|+.|..|++|.++.+      ..+.-...+..|...|+.+.|+|+|..|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            56899999999766 9999999999999988643      2344445567888899999999999999999999999999


Q ss_pred             ECCCCceeee-cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          197 DVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       197 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      ....-..... .......+.+ .......+|...|..++|+|++.++++++.|..+++||+..|+....+..|...|..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w-~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKW-VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccce-EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            8763111000 0000000000 0000113688899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc----------------C---------C----CCCeeEEEeccCCCeEEEEe
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT----------------R---------S----INPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------------~---------~----~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +|. |.++++++-+.|...+.+++...+                .         |    ..-...++|+|||.+|++..
T Consensus       172 awD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  172 AWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             ecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            999 889999999888877766654100                0         1    11235678999999998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.75  E-value=7.7e-16  Score=136.74  Aligned_cols=188  Identities=14%  Similarity=0.107  Sum_probs=138.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      ++.+++++.|+.|++||+.+++.+...   ..+. .+.++.|+|+++.+ ++++.++.|++||..+++.......     
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~---~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----   71 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTF---PVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----   71 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEE---ECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence            357889999999999999888655542   2222 36789999999876 5667789999999998765332210     


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-  292 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-  292 (372)
                                 + ..+..++|+|+++.++++ ..++.|++||+++.+.+..+.. ...+.+++|+ |+++++++++.++ 
T Consensus        72 -----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~  137 (300)
T TIGR03866        72 -----------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTN  137 (300)
T ss_pred             -----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCC
Confidence                       1 135678999999877554 5689999999999887777653 3456889999 9999999888765 


Q ss_pred             eEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          293 LCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       293 ~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      .+.+||.++..     .....+..++|+|+|++++++..     .++.+++||+.+++.+..+.
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~i~d~~~~~~~~~~~  196 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE-----IGGTVSVIDVATRKVIKKIT  196 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC-----CCCEEEEEEcCcceeeeeee
Confidence            46778986432     12335578999999998865521     47889999999888766554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=3.4e-17  Score=134.64  Aligned_cols=209  Identities=15%  Similarity=0.125  Sum_probs=150.7

Q ss_pred             ccccCCCCceEEEEECCC-CCEEEEEeCC-------CcEEEEeCCCCeEE------EEe-eecccCCcceEEEEECCCCC
Q 017421          118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQA-------SQIRIYDVERGWKI------QKD-ILAKSLRWTVTDTSLSPDQR  182 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~d-------g~i~vwd~~~~~~~------~~~-~~~~~~~~~v~~~~~~~~~~  182 (372)
                      ..|..|.+.|+.++-+|- .+.|+++..+       ..+-||.+......      ... .....+-+.|.++.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            456788999999999995 4555665432       24679998754221      111 11113334799999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe
Q 017421          183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK  260 (372)
Q Consensus       183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~s~dg~i~iwd~~~~~  260 (372)
                      .+++.. |..|.+|++..+..+ ...+.....         .++....++-+|+|  +|+.+++.+ |+++..||+++.+
T Consensus       137 klasm~-dn~i~l~~l~ess~~-vaev~ss~s---------~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~  204 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKI-VAEVLSSES---------AEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK  204 (370)
T ss_pred             eeEEec-cCceEEEEcccCcch-heeeccccc---------ccccceecccccCCCCccceEEEeC-CCcEEEEEccchh
Confidence            998876 788999999887653 111111110         12455778889998  677777654 8999999999887


Q ss_pred             EEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEE-EEeeeeEEE
Q 017421          261 LSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLI-IYLILVISI  331 (372)
Q Consensus       261 ~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~-~~~~~~~~~  331 (372)
                      +...+. +|...|..+.|+|....+|++|+.||.|+|||.|       .+.+|..+|+++.|+|....|+ +++      
T Consensus       205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~------  278 (370)
T KOG1007|consen  205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG------  278 (370)
T ss_pred             hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC------
Confidence            766664 6888999999996667789999999999999998       3558999999999999865444 443      


Q ss_pred             eeceEEEeecccc
Q 017421          332 YSPNILLDNYFLL  344 (372)
Q Consensus       332 ~d~~i~lw~~~~~  344 (372)
                      -|..+.||.+..-
T Consensus       279 SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  279 SDSAVNLSCASSV  291 (370)
T ss_pred             CCceeEEEecccc
Confidence            4777778865543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.1e-17  Score=146.66  Aligned_cols=219  Identities=12%  Similarity=0.193  Sum_probs=159.3

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVH  194 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  194 (372)
                      ...+.+|.+-|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..  ...+|...|.++.|-|  +.+.+++|..|..|+
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            456889999999999999999999999999999999986655544  3458999999999999  567889999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EEEE--------
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLR--------  264 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~~~--------  264 (372)
                      ++|+...+....-.-... ....+     .-|...|..++-.|++ +.+.++++||+|+-+|++... +...        
T Consensus       121 lfdl~~~~~~~~d~~~~~-~~~~~-----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEE-TTRCW-----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             EEecccccccccccCccc-hhhhh-----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            999975332111000000 00000     1366788889999988 788999999999999998632 1111        


Q ss_pred             -eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-cc------------------------CCC-----------C
Q 017421          265 -ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-LT------------------------RSI-----------N  307 (372)
Q Consensus       265 -~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-~~------------------------~~~-----------~  307 (372)
                       +...--...|+..+|.+..+|++|+.|-..++||.+. ++                        +|-           .
T Consensus       195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~  274 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT  274 (758)
T ss_pred             HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence             1112235678999988899999999999999999541 00                        111           1


Q ss_pred             CeeEEEeccCCCeEEEEeeeeEEEee-ceEEEeecccceEEEEE
Q 017421          308 PCNKYLFNPCNKYLIIYLILVISIYS-PNILLDNYFLLRTFYSF  350 (372)
Q Consensus       308 ~v~~~~~s~~g~~l~~~~~~~~~~~d-~~i~lw~~~~~~~~~~~  350 (372)
                      .++-++|+|+|.-|++.       |. -.++++|+..++....|
T Consensus       275 ~~t~vtfnpNGtElLvs-------~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  275 CCTYVTFNPNGTELLVS-------WGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             eeEEEEECCCCcEEEEe-------eCCeEEEEEeecCCCCceee
Confidence            24678899999887776       34 35778888877765554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=5.2e-16  Score=141.04  Aligned_cols=207  Identities=14%  Similarity=0.136  Sum_probs=165.0

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.-|++........++...+.|++++.+|.+..+++|+.||.+..++...+....... +....++|.+++|+|
T Consensus        86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~  164 (691)
T KOG2048|consen   86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNP  164 (691)
T ss_pred             ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecC
Confidence            3444567788888888888899999999999999999999999999988888887775544433 334457899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      ++..++.|+.||.|++||..++....+.....  .++.      .+-..-|.++.|-.++ .|++|...|+|.+||-..+
T Consensus       165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~--d~l~------k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL--DRLS------KREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             CccEEEecccCceEEEEEcCCCceEEEeeecc--cccc------cCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc
Confidence            99999999999999999999887654221110  0000      0122367778877665 6899999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc----------cCCCCCeeEEEeccC
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL----------TRSINPCNKYLFNPC  317 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~v~~~~~s~~  317 (372)
                      ..++.+..|...|.+++.. +++..+++++.|+.|.-|...+.          ..|...|.+++..++
T Consensus       236 TLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  236 TLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             chhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence            9999999999999999999 88999999999999888876532          256777888888776

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.74  E-value=8.3e-16  Score=135.35  Aligned_cols=205  Identities=12%  Similarity=0.107  Sum_probs=154.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ..-|.|++|.++|+ +++|..+|.|.||+..+.+....   ...|.+.|.++....+|.++- |+.|..|..||-.-.+ 
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~---~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k-  319 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ---VHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK-  319 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE---eeecCCceEEEEEecCccEee-cCccceEEeccccccc-
Confidence            46799999999998 78999999999999977655444   227888999999999987555 9999999999932222 


Q ss_pred             eeecceeecccccceec--cC-----------------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          204 ESLANVTEIHDGLDFSA--AD-----------------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~--~~-----------------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      +...++++..-.+....  ..                       --+|......++.+|+...+++++.|+.+++|+  .
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~  397 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D  397 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C
Confidence            22222222111100000  00                       026778899999999999999999999999999  4


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      .++..+.. -..++.|+.|+ |.| .++.|...|...+.|.++     ......+++.+.|+|+|.+||+++      .|
T Consensus       398 ~k~~wt~~-~~d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d  468 (626)
T KOG2106|consen  398 HKLEWTKI-IEDPAECADFH-PSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HD  468 (626)
T ss_pred             CceeEEEE-ecCceeEeecc-Ccc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec------CC
Confidence            44444433 45688999999 888 999999999999999874     223478999999999999999997      67


Q ss_pred             ceEEEeecccce
Q 017421          334 PNILLDNYFLLR  345 (372)
Q Consensus       334 ~~i~lw~~~~~~  345 (372)
                      +.|+++-+....
T Consensus       469 ~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  469 NHIYIYRVSANG  480 (626)
T ss_pred             CeEEEEEECCCC
Confidence            888888765543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.74  E-value=1.3e-16  Score=133.23  Aligned_cols=212  Identities=22%  Similarity=0.232  Sum_probs=155.0

Q ss_pred             ccCCceeEeeeeeCCCCCccc--cCCCC---ceEEEEECCCCCEEEEEeCCCcEEEEeC-CCCeEEEEeeec----ccCC
Q 017421          100 SAADCCHMLSRYLPVNGPWPV--DQTTS---RAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILA----KSLR  169 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~----~~~~  169 (372)
                      ++.+.-+.+|+.+.......+  ..|..   ...+++|+|||..|++|.. ..|+|||+ +.|+........    .+..
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence            455556778888776644333  23433   3468999999999988765 79999999 445322221111    1224


Q ss_pred             cceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-
Q 017421          170 WTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-  247 (372)
Q Consensus       170 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-  247 (372)
                      +-+.+++|+| +.+.+++++....+-||.-..+....+.-                ||.+.|+.+.|.++|+.|.+|+. 
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg----------------gh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG----------------GHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec----------------ccCCCeeeEEeccCcCeecccccC
Confidence            5688999999 56689999998888888877766544332                68889999999999999999876 


Q ss_pred             CCeEEEEECCCC-eEEEEeecCCC-CeEEE--EEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEecc
Q 017421          248 DDCIYVYDLEAN-KLSLRILAHTS-DVNTV--CFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNP  316 (372)
Q Consensus       248 dg~i~iwd~~~~-~~~~~~~~~~~-~v~~~--~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~  316 (372)
                      |-.|..||++.- .++..+..|.. .-..|  ... |++++|++|+.||.|++||++.+       ..+...++.++++|
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld-~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD-PKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP  350 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhccCccceEEEecC-CCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc
Confidence            667999999854 45666666654 22233  444 88999999999999999999853       25667789999999


Q ss_pred             CCCeEEEEeeeeE
Q 017421          317 CNKYLIIYLILVI  329 (372)
Q Consensus       317 ~g~~l~~~~~~~~  329 (372)
                      --.+++++++..+
T Consensus       351 ~mpilatssGqr~  363 (406)
T KOG2919|consen  351 IMPILATSSGQRI  363 (406)
T ss_pred             ccceeeeccCcee
Confidence            9888888865544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.6e-16  Score=132.14  Aligned_cols=228  Identities=12%  Similarity=0.174  Sum_probs=165.0

Q ss_pred             ccCCCCc---cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc--
Q 017421           92 NYSGRGR---FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--  166 (372)
Q Consensus        92 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--  166 (372)
                      .|+..|.   .+..+..+.+|++........+.+|..+|.+++||+||++|++++.|..|.+||+..+..+.......  
T Consensus        30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv  109 (405)
T KOG1273|consen   30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPV  109 (405)
T ss_pred             EeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcc
Confidence            4555554   36777889999999999889999999999999999999999999999999999999886544322111  


Q ss_pred             ------cC-----------------------------------CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          167 ------SL-----------------------------------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       167 ------~~-----------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                            .+                                   .....+..|.+.|+++++|...|.+.++|..+.++..
T Consensus       110 ~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va  189 (405)
T KOG1273|consen  110 WGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA  189 (405)
T ss_pred             ceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee
Confidence                  00                                   0011122366678899999999999999999888765


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eE--EEEeec--CCCCeEE
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-------KL--SLRILA--HTSDVNT  274 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-------~~--~~~~~~--~~~~v~~  274 (372)
                      ..+....               ..|..+.++..|+.|+.-+.|..|+.|+++.-       +.  .+.+..  ....=.+
T Consensus       190 s~rits~---------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  190 SFRITSV---------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             eeeechh---------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            5543321               27889999999999999999999999998631       11  111110  1122357


Q ss_pred             EEEeCCCCCEEEEEeC-CCeEEEEeccc------ccCCC-CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          275 VCFGDESGHLIYSGSD-DNLCKVNSVLL------LTRSI-NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~-dg~i~vwd~~~------~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      ++|+ .+|.+++.++. ...++||....      +.+.. .....+.|+|--..+++-.       .+++++|...
T Consensus       255 ccfs-~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~-------sg~v~iw~~~  322 (405)
T KOG1273|consen  255 CCFS-GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA-------SGVVYIWAVV  322 (405)
T ss_pred             eeec-CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc-------CCceEEEEee
Confidence            8899 89999988773 56799998753      23333 4567888999877776653       5666677544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.5e-16  Score=125.77  Aligned_cols=205  Identities=13%  Similarity=0.074  Sum_probs=141.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      .|..-+|+|.+++|++|..+|+|.++.+..-       ...........|.+++..++|.  ..+|++++ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            3555689999999999999999999998642       1111223347899999999998  44566665 599999986


Q ss_pred             CCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          199 GSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       199 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      +.... .....+.+........    .-.--.|+.|...|..+-++.++.|+.++-||+++|+..+++.+|+..|.++.-
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~----~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVD----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG  164 (325)
T ss_pred             hhhhhhccchhhhhhcCccccC----cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence            54322 1111111110000000    001126899999998887888889999999999999999999999999999988


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeccccc---------------C-CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLLLT---------------R-SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~~~---------------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      - .....+++|+.||++|+||.++.+               . ...+|.+++  -+..+|+++.       -..+.||.+
T Consensus       165 R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-------Gp~lslwhL  234 (325)
T KOG0649|consen  165 R-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-------GPKLSLWHL  234 (325)
T ss_pred             c-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-------CCceeEEec
Confidence            5 556678999999999999998543               1 123344444  4456888774       455667776


Q ss_pred             ccceEE
Q 017421          342 FLLRTF  347 (372)
Q Consensus       342 ~~~~~~  347 (372)
                      ......
T Consensus       235 rsse~t  240 (325)
T KOG0649|consen  235 RSSEST  240 (325)
T ss_pred             cCCCce
Confidence            665543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=6.6e-17  Score=144.02  Aligned_cols=221  Identities=10%  Similarity=0.115  Sum_probs=169.7

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  193 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  193 (372)
                      .+..|...|+.++|+|....|++++.||.|++|+++.     ...+.....+.+|.++|.|+.+.+.+.++++|+.||.|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            5677899999999999999999999999999999942     23445556688999999999999999999999999999


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-------
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------  266 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------  266 (372)
                      +.|++....-     ....+.... -...-.||...|+.+++|+....|++++.||++++|+.....+ .++.       
T Consensus       369 ~~w~~p~n~d-----p~ds~dp~v-l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  369 RCWNLPPNQD-----PDDSYDPSV-LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             eeeccCCCCC-----cccccCcch-hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            9997752211     000000000 0001127889999999999988999999999999998764433 0000       


Q ss_pred             -----------cC----------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          267 -----------AH----------------------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       267 -----------~~----------------------------------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                                 .|                                  ...+..+.++ |++.+.+++..|+.|+++|..+
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-~~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-PTADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec-CCCCeeEecccCCceecccccc
Confidence                       00                                  1235567777 7888999999999999999875


Q ss_pred             cc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          302 LT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       302 ~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      ..      .|...++++++.|+|-+|++++      .|+.+++|+......+.....|
T Consensus       521 ~~~l~s~~a~~~svtslai~~ng~~l~s~s------~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  521 GKILHSMVAHKDSVTSLAIDPNGPYLMSGS------HDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             cccchheeeccceecceeecCCCceEEeec------CCceeehhhccchheeeccccc
Confidence            43      6788899999999999999986      6999999998777766666555

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=4.7e-16  Score=144.79  Aligned_cols=216  Identities=15%  Similarity=0.088  Sum_probs=143.1

Q ss_pred             eeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421          105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (372)
                      .+.+++.. ......+..|...+..++|+|||+.|+.++.+   ..|++||+.++.... .....+   ....++|+|||
T Consensus       185 ~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g---~~~~~~wSPDG  259 (429)
T PRK01742        185 EVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG---HNGAPAFSPDG  259 (429)
T ss_pred             EEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC---ccCceeECCCC
Confidence            34444432 33355677788899999999999999887654   369999998774322 111223   24468999999


Q ss_pred             CEEEEEe-CCCeEE--EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 017421          182 RHLVYAS-MSPIVH--IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLE  257 (372)
Q Consensus       182 ~~l~~~~-~dg~i~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~  257 (372)
                      +.|+++. .+|.+.  +||+.++....+..                 +...+....|+|||+.|+.++ .++...||++.
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQLTS-----------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEeecc-----------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            9988765 577655  45666665432221                 223577899999999877655 46777888764


Q ss_pred             CC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          258 AN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       258 ~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      .. .....+ .+..  .++.|+ |+|+.|+.++.++ +.+||+.+..    .......++.|+|||++|+.++      .
T Consensus       323 ~~~~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s------~  391 (429)
T PRK01742        323 ASGGGASLV-GGRG--YSAQIS-ADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSS------T  391 (429)
T ss_pred             CCCCCeEEe-cCCC--CCccCC-CCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEE------c
Confidence            32 222223 3433  467899 9999998887765 5558986432    1112346788999999999875      4


Q ss_pred             eceEEEeecc--cceEEEEEeee
Q 017421          333 SPNILLDNYF--LLRTFYSFMVH  353 (372)
Q Consensus       333 d~~i~lw~~~--~~~~~~~~~~h  353 (372)
                      ++...+|.+.  +|+..+.+.+|
T Consensus       392 ~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        392 QGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             CCCceEEEEEECCCCceEEccCC
Confidence            6667777653  57777777655

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=1.6e-16  Score=129.12  Aligned_cols=219  Identities=14%  Similarity=0.163  Sum_probs=152.4

Q ss_pred             CCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421          113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  192 (372)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  192 (372)
                      |....+.+++|.+.|+++.|..+++ |.+|...|.|++|.+.+.+......  ..+...|+.+.--|+ ..+.+-+.|+.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~-d~l~tqgRd~~   78 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPN-DSLDTQGRDPL   78 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh--hhccceeeceeecCC-cchhhcCCCce
Confidence            3444566789999999999998887 8899999999999999875544321  144557888888887 56788889999


Q ss_pred             EEEEECCCCceeeecceeeccc---------------ccceecc----------------------CCCCccccEEEEEE
Q 017421          193 VHIVDVGSGTMESLANVTEIHD---------------GLDFSAA----------------------DDGGYSFGIFSLKF  235 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~---------------~~~~~~~----------------------~~~~h~~~i~~~~~  235 (372)
                      +.+|++..+....+..+...+-               ...+.+.                      ...+..+.+.+..+
T Consensus        79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            9999997744332221111110               0111111                      01233455666664


Q ss_pred             cC-CCC--EEEEEeCCCeEEEEECCCCeEEEEe----------ecCCC--------------------------------
Q 017421          236 ST-DGR--ELVAGSSDDCIYVYDLEANKLSLRI----------LAHTS--------------------------------  270 (372)
Q Consensus       236 sp-~~~--~l~s~s~dg~i~iwd~~~~~~~~~~----------~~~~~--------------------------------  270 (372)
                      .. ++.  ++++|.++|.+.+||+.++..+..+          ..|..                                
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            33 233  4578888999999999986322211          12322                                


Q ss_pred             --------------CeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          271 --------------DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       271 --------------~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                                    .|..+..- ||++.+|+++.|+.||||..+++      +.|...|++++|+|+-..+|+++     
T Consensus       239 gslq~~~e~~lknpGv~gvrIR-pD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas-----  312 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIR-PDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS-----  312 (323)
T ss_pred             CcccccceEEecCCCccceEEc-cCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc-----
Confidence                          23344454 89999999999999999999864      47899999999999988888886     


Q ss_pred             EeeceEEEeecc
Q 017421          331 IYSPNILLDNYF  342 (372)
Q Consensus       331 ~~d~~i~lw~~~  342 (372)
                       -|.+|.||+++
T Consensus       313 -kD~rISLWkLY  323 (323)
T KOG0322|consen  313 -KDARISLWKLY  323 (323)
T ss_pred             -CCceEEeeecC
Confidence             68999999863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.73  E-value=2.9e-16  Score=141.76  Aligned_cols=232  Identities=13%  Similarity=0.078  Sum_probs=158.8

Q ss_pred             ccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeE--E---------------
Q 017421          100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWK--I---------------  159 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~--~---------------  159 (372)
                      .++|..+++|++........  +.+|.+.|.++||.|.. ..|++|+.||.|.|||+.-...  .               
T Consensus       118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p  197 (720)
T KOG0321|consen  118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP  197 (720)
T ss_pred             ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence            66788899999988765444  88999999999999954 6788999999999999864210  0               


Q ss_pred             -------EEeeecccCCcceEE---EEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccc
Q 017421          160 -------QKDILAKSLRWTVTD---TSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF  228 (372)
Q Consensus       160 -------~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  228 (372)
                             ........+...|.+   +.+..|...|++++. |+.|+|||++.............+ .  +..+  ..-.-
T Consensus       198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~-~--~~t~--skrs~  272 (720)
T KOG0321|consen  198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD-K--YPTH--SKRSV  272 (720)
T ss_pred             CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc-C--ccCc--cccee
Confidence                   000011122233444   556668889999888 999999999987653322211110 0  0000  01133


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCCC-e-EEEEEeCCCCCEEEEEeCCCeEEEEeccc---
Q 017421          229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSD-V-NTVCFGDESGHLIYSGSDDNLCKVNSVLL---  301 (372)
Q Consensus       229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~-v-~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---  301 (372)
                      .+.++.....|.+|.+.+.|+.|+.||+.+-.  ++..+.++... . ..-..+ |++.++++|+.|...++|.+..   
T Consensus       273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS-pd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS-PDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC-CCCceEeccCCCcceeeeeecCccC
Confidence            67778888888888887789999999998643  33334433221 1 112345 8999999999999999999874   


Q ss_pred             ----ccCCCCCeeEEEeccC--CCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          302 ----LTRSINPCNKYLFNPC--NKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       302 ----~~~~~~~v~~~~~s~~--g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                          +.+|...|+.++|.|.  +..+.+ +      -|.++++|++..+
T Consensus       352 ~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-S------dD~~~kiW~l~~~  393 (720)
T KOG0321|consen  352 PPALLLGHTREVTTVRWLPSATTPVATC-S------DDFRVKIWRLSNG  393 (720)
T ss_pred             ChhhhhCcceEEEEEeeccccCCCceee-c------cCcceEEEeccCc
Confidence                4489999999999886  444444 3      4778888887554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1e-16  Score=138.35  Aligned_cols=178  Identities=16%  Similarity=0.209  Sum_probs=132.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      .+++|+++|..+++|+.||+++||+......+..   ...|...|.++.|+|||+.|++.+.| ..+||+.+++......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            7899999999999999999999999776543333   55677789999999999999999999 8999999998543222


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCCC---CEEE--EEeCCCeEEEEECCCCeE-----EEEeecCCCCeEEEEE
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---RELV--AGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF  277 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~---~~l~--s~s~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~  277 (372)
                      ....              -..-...+.|+.|+   .+++  .....+.|..||+.....     ..+.......|++++.
T Consensus       224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence            2111              11245556777665   3332  223345677776654321     1111123357999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEE
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      + ++|++++.|+.||.|.|++...++       .|..-|+.+.|+|+.++++..
T Consensus       290 S-~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  290 S-DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             c-CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence            9 999999999999999999987544       788899999999999988864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.8e-15  Score=126.28  Aligned_cols=244  Identities=16%  Similarity=0.120  Sum_probs=161.5

Q ss_pred             ccccceeeeecccCccCCCCccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCC
Q 017421           78 LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG  156 (372)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~  156 (372)
                      ..-...+.+..|+.-+  .-.+...|+.+++++-.....+..-......|.|++|-|. +.-|++|+.. -|.||.....
T Consensus        96 ws~~dlr~~aWhqH~~--~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~t  172 (445)
T KOG2139|consen   96 WSEIDLRGVAWHQHII--AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRT  172 (445)
T ss_pred             hhhcceeeEeechhhh--hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcc
Confidence            3344555566665321  1134566677777666553333333345778999999995 4667888875 4999987532


Q ss_pred             eEE-----------EEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCC
Q 017421          157 WKI-----------QKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG  224 (372)
Q Consensus       157 ~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (372)
                      -..           .......+| .+|++++|.+||..+++++. |..|.|||..++....+...               
T Consensus       173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------  236 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---------------  236 (445)
T ss_pred             cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------
Confidence            111           111223445 47999999999999999876 67899999999987666532               


Q ss_pred             CccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc---
Q 017421          225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL---  300 (372)
Q Consensus       225 ~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~---  300 (372)
                       ..+.++-+.|||||.+|.+++-|+..++|+.. +....+-.. ..+.|...+|+ |+|++|+.... |.-++|.+.   
T Consensus       237 -glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWs-pcGsfLLf~~s-gsp~lysl~f~~  312 (445)
T KOG2139|consen  237 -GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWS-PCGSFLLFACS-GSPRLYSLTFDG  312 (445)
T ss_pred             -CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeec-CCCCEEEEEEc-CCceEEEEeecC
Confidence             12378889999999999999999999999654 343333333 34589999999 88887654432 223344432   


Q ss_pred             -----------------------ccc----CCCCCeeEEEeccCCCeEEEEeee--eEEEeeceEEEeecccc
Q 017421          301 -----------------------LLT----RSINPCNKYLFNPCNKYLIIYLIL--VISIYSPNILLDNYFLL  344 (372)
Q Consensus       301 -----------------------~~~----~~~~~v~~~~~s~~g~~l~~~~~~--~~~~~d~~i~lw~~~~~  344 (372)
                                             +..    -..+++.+++|.|.|.+|++...+  .+..+..-|.+||....
T Consensus       313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence                                   000    124678999999999999988432  23444566667765543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=1.8e-15  Score=129.94  Aligned_cols=112  Identities=20%  Similarity=0.208  Sum_probs=90.2

Q ss_pred             CccccCCceeEeeeeeCCCCCc---------cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC--------C----
Q 017421           97 GRFSAADCCHMLSRYLPVNGPW---------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE--------R----  155 (372)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--------~----  155 (372)
                      ....++|..+++|.........         .+..|...|+++.|+|+|.+||+|+.+|.|.+|-..        +    
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~  108 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL  108 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence            3456778889999888655432         467899999999999999999999999999999866        2    


Q ss_pred             -CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 017421          156 -GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN  208 (372)
Q Consensus       156 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  208 (372)
                       .+.........+|...|..++|+|++.++++++.|..+++||+..|.......
T Consensus       109 ~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen  109 NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence             11122223455788899999999999999999999999999999998755443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=5.6e-15  Score=134.28  Aligned_cols=232  Identities=14%  Similarity=0.123  Sum_probs=171.9

Q ss_pred             CccCCCC--ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--------E
Q 017421           91 GNYSGRG--RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--------Q  160 (372)
Q Consensus        91 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--------~  160 (372)
                      .+|.+++  .+..++..+.+++...+.....+.+|...|+|++|+.||+++|+|+.|..|.+|...-...+        +
T Consensus        18 ~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ   97 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ   97 (1081)
T ss_pred             eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee
Confidence            3444444  34667777888888888888999999999999999999999999999999999986532111        1


Q ss_pred             Eeeec--------------------------ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          161 KDILA--------------------------KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       161 ~~~~~--------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      .....                          ......+.+++|..||++++.|-.+|+|.+-+-.......+.+      
T Consensus        98 CMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R------  171 (1081)
T KOG1538|consen   98 CMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER------  171 (1081)
T ss_pred             EeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC------
Confidence            11000                          0222367888999999999999999999887543322222211      


Q ss_pred             ccceeccCCCCccccEEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDG-----RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                              .+|...+|.+++|+|..     ..+++.....++..|.+. |+.+..-..-.-...|+.+. ++|.++..|+
T Consensus       172 --------pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf-~NGEy~LiGG  241 (1081)
T KOG1538|consen  172 --------PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYF-TNGEYILLGG  241 (1081)
T ss_pred             --------CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheec-cCCcEEEEcc
Confidence                    12566799999999963     467778888888888776 44443333333456789998 9999999999


Q ss_pred             CCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          290 DDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       290 ~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      .|+.+++|-.+     ++.....+|+.++..|+++.++.|.      .||+|-.+++...
T Consensus       242 sdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC------qDGTiACyNl~fS  295 (1081)
T KOG1538|consen  242 SDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC------QDGTIACYNLIFS  295 (1081)
T ss_pred             CCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEE------ccCeeehhhhHHh
Confidence            99999999765     5556788999999999999999885      5888888876543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.7e-16  Score=129.49  Aligned_cols=187  Identities=13%  Similarity=0.088  Sum_probs=141.6

Q ss_pred             cccCCceeEeeeeeCCCCCccccCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421           99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      .+-++..+++++.-..+....+.+++..++.+.|..  ....+.+++.||+|++||++................+..+++
T Consensus        45 v~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld  124 (376)
T KOG1188|consen   45 VSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD  124 (376)
T ss_pred             EEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence            344556677777777777888999999999999977  456788999999999999998765554443333335678888


Q ss_pred             ECCCCCEEEEEeC----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeE
Q 017421          177 LSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCI  251 (372)
Q Consensus       177 ~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i  251 (372)
                      .+..++.+++|+.    +-.|.+||++..+.. +..+.+             .|...|+++.|+|. .++|++|+.||-|
T Consensus       125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~e-------------SH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  125 LNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNE-------------SHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             ccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhh-------------hccCcceeEEecCCCCCeEEeecccceE
Confidence            8878888888865    668999999876641 111111             47779999999996 4789999999999


Q ss_pred             EEEECCCCe----EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          252 YVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       252 ~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      .+||++...    .+.++ .|...|.++.|..+.-+.|.+-+...+..+|+++
T Consensus       191 nlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             EeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            999998653    22333 4777899999983333568888889999999975

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=1.1e-15  Score=126.04  Aligned_cols=203  Identities=10%  Similarity=0.123  Sum_probs=149.5

Q ss_pred             cCCCCceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCe-EEE-----EeeecccCCcceEEEEECC-CCCEEEEEe
Q 017421          121 DQTTSRAYVSQFSADG-----SLFVAGFQASQIRIYDVERGW-KIQ-----KDILAKSLRWTVTDTSLSP-DQRHLVYAS  188 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~~-~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  188 (372)
                      ..|.-+++.+-|.|+.     ++||+.+  ..+++|.+.... .+.     .......+..++++..|+. +.++|.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            4688999999999976     3455544  479999987421 111     1112335567899999998 788999999


Q ss_pred             CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEee-
Q 017421          189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL-  266 (372)
Q Consensus       189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~-  266 (372)
                      -|-+..|||++++..-.+..-.-             .|...|..++|...+ +.||+.+.||.|++||++..+....+. 
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLI-------------AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE  237 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLI-------------AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE  237 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEE-------------ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence            99999999999873211110000             377799999999865 578999999999999999876433332 


Q ss_pred             --cCCCCeEEEEEeCCCCCEEEEEeCC-CeEEEEecc-------cccCCCCCeeEEEeccCCC-eEEEEeeeeEEEeece
Q 017421          267 --AHTSDVNTVCFGDESGHLIYSGSDD-NLCKVNSVL-------LLTRSINPCNKYLFNPCNK-YLIIYLILVISIYSPN  335 (372)
Q Consensus       267 --~~~~~v~~~~~sp~~~~~l~s~~~d-g~i~vwd~~-------~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~  335 (372)
                        ....+...++|++.|.+++|+-..| ..|.|.|+|       .+++|.+.|+.++|.|... .|+++.      -|.+
T Consensus       238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG------DD~q  311 (364)
T KOG0290|consen  238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG------DDCQ  311 (364)
T ss_pred             CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC------Ccce
Confidence              2245778899998888999987665 469999998       5679999999999999854 566654      3677


Q ss_pred             EEEeecccc
Q 017421          336 ILLDNYFLL  344 (372)
Q Consensus       336 i~lw~~~~~  344 (372)
                      ..+||+...
T Consensus       312 aliWDl~q~  320 (364)
T KOG0290|consen  312 ALIWDLQQM  320 (364)
T ss_pred             EEEEecccc
Confidence            788887643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.69  E-value=1.8e-15  Score=126.61  Aligned_cols=164  Identities=18%  Similarity=0.219  Sum_probs=131.9

Q ss_pred             cccCCCCceEEEEECC----C-CCEEEEEeCCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCC----CCEEEEE
Q 017421          119 PVDQTTSRAYVSQFSA----D-GSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPD----QRHLVYA  187 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~----~-~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~  187 (372)
                      ....|..+|.+++|++    + ...+++.+. ..+.+|......  ++........+......++|+-+    ..+++.+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            4567889999999985    2 244566554 578889876543  33333334456677888888764    3478888


Q ss_pred             eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421          188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL  266 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~  266 (372)
                      +.-|.|+|.|+.++++.....                +|...|+.+.|+|+. +++++++.|..|++|++++..++..+-
T Consensus       112 G~~GvIrVid~~~~~~~~~~~----------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG  175 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYR----------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG  175 (385)
T ss_pred             cceeEEEEEecchhhhcccee----------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence            999999999999887644443                688899999999975 788999999999999999999988875


Q ss_pred             ---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          267 ---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       267 ---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                         +|...|.++.|+ .+|.+|++++.|.+|++|++.
T Consensus       176 G~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             ccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecC
Confidence               699999999999 999999999999999999997

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.68  E-value=5.1e-14  Score=130.17  Aligned_cols=223  Identities=23%  Similarity=0.251  Sum_probs=170.1

Q ss_pred             CCceeEeeeeeCCC-CCccccCCC-CceEEEEE-CCCCC-EEEEEeC-CCcEEEEeCCC-CeEEEEeeecccCCcceEEE
Q 017421          102 ADCCHMLSRYLPVN-GPWPVDQTT-SRAYVSQF-SADGS-LFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       102 ~~~~~~~~~~~~~~-~~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+..+.+|...... ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... ......   ...|...|..+
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~  161 (466)
T COG2319          85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT---LEGHSESVTSL  161 (466)
T ss_pred             CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE---EecCcccEEEE
Confidence            46667777776665 444455533 36777777 88887 5555444 89999999987 433333   55777789999


Q ss_pred             EECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EEEEEeCCCeEEE
Q 017421          176 SLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYV  253 (372)
Q Consensus       176 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s~dg~i~i  253 (372)
                      .|+|+++.++.++. ++.+++|++..+.......                +|...+.+++|+|++. .+++++.|+.|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA----------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             EECCCCCEEEecCCCCCceEEEEcCCCceEEeec----------------cCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            99999998888885 9999999999855433333                3667999999999998 5555588999999


Q ss_pred             EECCCCeEEE-EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEe
Q 017421          254 YDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       254 wd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      ||...+.... .+..|...+ ...|+ +++.++++++.|+.+++|+++...       .|...+.++.|.|++..++++.
T Consensus       226 wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  303 (466)
T COG2319         226 WDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS  303 (466)
T ss_pred             EECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence            9999887777 677887775 44788 888888999999999999997433       5678999999999888887764


Q ss_pred             eeeEEEeeceEEEeecccceEEEEEe
Q 017421          326 ILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       326 ~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                            .|+.+.+|+..+........
T Consensus       304 ------~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         304 ------SDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             ------CCCcEEEEEcCCCceEEEee
Confidence                  45668888888777666655

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=6.7e-14  Score=119.13  Aligned_cols=158  Identities=15%  Similarity=0.134  Sum_probs=129.5

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe--CCCeEEEEECCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--MSPIVHIVDVGS  200 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~  200 (372)
                      .+..|.++.++  .++|+++-.+ .|+|||+.+.+.+........+...+.++++++.+.+++.-+  ..|.|.+||..+
T Consensus        86 fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   86 FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence            36678888887  4556666554 599999999988887766656666688888888888888643  378999999987


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeEEEEeecC--CCCeEEEEE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-IYVYDLEANKLSLRILAH--TSDVNTVCF  277 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~  277 (372)
                      -+......                .|.+.+-+++|+|+|.+||++++.|+ |+||.+.+|+.+..+...  ...|++++|
T Consensus       163 l~~v~~I~----------------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F  226 (391)
T KOG2110|consen  163 LQPVNTIN----------------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF  226 (391)
T ss_pred             ceeeeEEE----------------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence            66544443                37779999999999999999999997 899999999999888742  346889999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEecc
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      + +++++|++.+..++|++|.+.
T Consensus       227 s-~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  227 S-PDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             C-CCCCeEEEecCCCeEEEEEec
Confidence            9 999999999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5.5e-14  Score=130.73  Aligned_cols=211  Identities=15%  Similarity=0.087  Sum_probs=138.9

Q ss_pred             CCccccCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCC
Q 017421          116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSP  191 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg  191 (372)
                      .+..+..+...+...+|+|||+.|+..+.   +..|.+|++.+++... .....+   .+..+.|+|||+.|+.. +.+|
T Consensus       190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~---~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR---HNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCC---CcCCeEECCCCCEEEEEEcCCC
Confidence            34556667778999999999999986542   3579999998774322 111222   35568999999988865 3344


Q ss_pred             --eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEee
Q 017421          192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRIL  266 (372)
Q Consensus       192 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~  266 (372)
                        .|++||+.++....+..                 +...+....|+|||+.|+..+.+ +  .|.++|+.+++. ..+.
T Consensus       266 ~~~I~~~d~~tg~~~~lt~-----------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt  327 (429)
T PRK03629        266 SLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT  327 (429)
T ss_pred             CcEEEEEECCCCCEEEccC-----------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee
Confidence              59999998877544332                 11256788999999998877654 3  455667776654 3444


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                      .+........|+ |+|++|+..+.+   ..|.+||+.+..    ..........|+|||++|+.++....   ...+.++
T Consensus       328 ~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~  403 (429)
T PRK03629        328 WEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM---GSVLNLV  403 (429)
T ss_pred             cCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC---ceEEEEE
Confidence            444556678999 999988876543   358888876322    11123456889999999987752211   1236677


Q ss_pred             ecccceEEEEEeee
Q 017421          340 NYFLLRTFYSFMVH  353 (372)
Q Consensus       340 ~~~~~~~~~~~~~h  353 (372)
                      ++ +|+..+.+.+|
T Consensus       404 ~~-~G~~~~~l~~~  416 (429)
T PRK03629        404 ST-DGRFKARLPAT  416 (429)
T ss_pred             EC-CCCCeEECccC
Confidence            76 45555555443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=2.2e-14  Score=118.17  Aligned_cols=157  Identities=13%  Similarity=0.125  Sum_probs=109.5

Q ss_pred             EEEEECCCCCEEEEEeC----------CCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCE
Q 017421          173 TDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  241 (372)
Q Consensus       173 ~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  241 (372)
                      ..+.|+|+|.+|++-..          -+...+|.++.... .....+               ...++|.+++|+|+|+.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l---------------~~~~~I~~~~WsP~g~~   73 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL---------------KKEGPIHDVAWSPNGNE   73 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec---------------cCCCceEEEEECcCCCE
Confidence            46789999988775433          13344554432221 111111               12237999999999998


Q ss_pred             EEEE--eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEeccccc----CCCCCeeEE
Q 017421          242 LVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSVLLLT----RSINPCNKY  312 (372)
Q Consensus       242 l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~~~~~----~~~~~v~~~  312 (372)
                      |++.  ..++.|.+||++ ++.+..+.  ...+..+.|+ |+|++|++++.   .|.|.+||++..+    .....++.+
T Consensus        74 favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~  149 (194)
T PF08662_consen   74 FAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDV  149 (194)
T ss_pred             EEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEE
Confidence            7654  456789999997 66666654  4677899999 99999999874   4679999998433    233457899


Q ss_pred             EeccCCCeEEEEeee-eEEEeeceEEEeecccceEEEEE
Q 017421          313 LFNPCNKYLIIYLIL-VISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~-~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +|+|||+++++++.. ..++ |+.++||++. |+.+...
T Consensus       150 ~WsPdGr~~~ta~t~~r~~~-dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  150 EWSPDGRYLATATTSPRLRV-DNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEcCCCCEEEEEEeccceec-cccEEEEEec-CeEeEec
Confidence            999999999988532 4454 8999999984 7666543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=7.4e-14  Score=130.49  Aligned_cols=209  Identities=17%  Similarity=0.108  Sum_probs=140.6

Q ss_pred             CCCCccccCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeC
Q 017421          114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM  189 (372)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~  189 (372)
                      ...+..+..|...+...+|+|||+.|+..+.   +..|.+||+.++....    ...+...+....|+|||+.|+. .+.
T Consensus       191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~la~~~~~  266 (435)
T PRK05137        191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----VGNFPGMTFAPRFSPDGRKVVMSLSQ  266 (435)
T ss_pred             CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----eecCCCcccCcEECCCCCEEEEEEec
Confidence            4445667788889999999999999987754   4689999998875422    2233446778999999998764 444


Q ss_pred             CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEE
Q 017421          190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSLR  264 (372)
Q Consensus       190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~  264 (372)
                      ++  .|++||+.++....+..                 +........|+|||+.|+..+. +|  .|+++|+..++. ..
T Consensus       267 ~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~  328 (435)
T PRK05137        267 GGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RR  328 (435)
T ss_pred             CCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EE
Confidence            54  48888998876544322                 2224567899999999887764 33  688889876654 34


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL  337 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~  337 (372)
                      +..+...+....|+ |+|+.|+..+.+   ..|.+||+....    .....+..+.|+|||+.|+......-......+.
T Consensus       329 lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~  407 (435)
T PRK05137        329 ISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY  407 (435)
T ss_pred             eecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence            44345566778999 999998877643   357788874211    1223467889999999988664211000013456


Q ss_pred             Eeecccce
Q 017421          338 LDNYFLLR  345 (372)
Q Consensus       338 lw~~~~~~  345 (372)
                      +.++..+.
T Consensus       408 ~~dl~g~~  415 (435)
T PRK05137        408 TVDLTGRN  415 (435)
T ss_pred             EEECCCCc
Confidence            66665443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=1.6e-13  Score=123.91  Aligned_cols=230  Identities=13%  Similarity=0.065  Sum_probs=145.0

Q ss_pred             CceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          103 DCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      ++.+.+|++........  ...+.+.+..++++|++++|++++ .++.|.+|++.....+.... .......+..++|+|
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-~~~~~~~p~~i~~~~   89 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA-ESPLPGSPTHISTDH   89 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee-eecCCCCceEEEECC
Confidence            45566666642221111  122346677899999999987664 47889999997321221111 111222467899999


Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCcee-eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 017421          180 DQRHLVYASM-SPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL  256 (372)
Q Consensus       180 ~~~~l~~~~~-dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~  256 (372)
                      +++++++++. ++.|.+|++++.... .......              +......++++|+++++++++ .++.|.+||+
T Consensus        90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            9999888765 889999999743211 1111000              112456788999999886554 5689999999


Q ss_pred             CCCeEEE-------EeecCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEeccc----cc------C------CCCCeeEE
Q 017421          257 EANKLSL-------RILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSVLL----LT------R------SINPCNKY  312 (372)
Q Consensus       257 ~~~~~~~-------~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~~----~~------~------~~~~v~~~  312 (372)
                      .+...+.       ... .......++|+ |+|++++++.. ++.|.+|++..    +.      .      .......+
T Consensus       156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i  233 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI  233 (330)
T ss_pred             CCCCcccccCCCceecC-CCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence            7633221       111 23456789999 99999988876 89999999862    11      0      11123358


Q ss_pred             EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      .|+|+|++++++.     ..++.|.+|++........+.+|.
T Consensus       234 ~~~pdg~~lyv~~-----~~~~~I~v~~i~~~~~~~~~~~~~  270 (330)
T PRK11028        234 HITPDGRHLYACD-----RTASLISVFSVSEDGSVLSFEGHQ  270 (330)
T ss_pred             EECCCCCEEEEec-----CCCCeEEEEEEeCCCCeEEEeEEE
Confidence            8999999999873     136778888886544333444443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.66  E-value=1.8e-15  Score=134.30  Aligned_cols=181  Identities=20%  Similarity=0.225  Sum_probs=127.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec--ccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeccee
Q 017421          134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVT  210 (372)
Q Consensus       134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  210 (372)
                      |.+--+++|-..|.|.+.|.... .+.++...  .-.+..|+++.|-| +...++++-.+|.+++||..-..........
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            45556888888899999987652 21111111  11224799999999 4556777788999999986321100000000


Q ss_pred             ecccccceeccCCC------------CccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          211 EIHDGLDFSAADDG------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       211 ~~~~~~~~~~~~~~------------~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      ....+-.|.-+...            --...|+..+|+|||++||+.+.||.++|||..+.+.+..++..-+...|++||
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence            00000001110000            012478899999999999999999999999999988877777777899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEecc
Q 017421          279 DESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNP  316 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~  316 (372)
                       |||++|++|++|.-|.||.+.      ..++|.++|+.++|.|
T Consensus       342 -PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 -PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             -CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence             999999999999999999986      4569999999999995

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=6.2e-14  Score=119.32  Aligned_cols=210  Identities=14%  Similarity=0.110  Sum_probs=145.8

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (372)
                      ++..++...+.........-...|--+-|+  ..++|..+.+  +.++++++..+..+.......    +|.++.++.  
T Consensus        26 ~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmNr--   97 (391)
T KOG2110|consen   26 DGYKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMNR--   97 (391)
T ss_pred             CceeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEcc--
Confidence            445555555544422222223334444555  4556555443  459999998886666544333    699999975  


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE--eCCCeEEEEECCCC
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEAN  259 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~--s~dg~i~iwd~~~~  259 (372)
                      +.|++.-. ..|+|||++..+..........             +...+..+++++.+.+++.-  ...|.|.+||+.+-
T Consensus        98 ~RLvV~Le-e~IyIydI~~MklLhTI~t~~~-------------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   98 KRLVVCLE-ESIYIYDIKDMKLLHTIETTPP-------------NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             ceEEEEEc-ccEEEEecccceeehhhhccCC-------------CccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            44555544 4599999998887555543322             22357777777777788753  33588999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCe-EEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~-i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      +.+..+..|.+.+.+++|+ ++|.+|||++..|+ |||+.+...+        .....|.+++|+|++++|++.+     
T Consensus       164 ~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-----  237 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-----  237 (391)
T ss_pred             eeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-----
Confidence            9999999999999999999 99999999999998 7999886332        1245689999999999998775     


Q ss_pred             EeeceEEEeecc
Q 017421          331 IYSPNILLDNYF  342 (372)
Q Consensus       331 ~~d~~i~lw~~~  342 (372)
                       -..+|.++.+.
T Consensus       238 -~TeTVHiFKL~  248 (391)
T KOG2110|consen  238 -NTETVHIFKLE  248 (391)
T ss_pred             -CCCeEEEEEec
Confidence             24556555543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=3.3e-15  Score=132.54  Aligned_cols=179  Identities=11%  Similarity=0.115  Sum_probs=136.6

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+..|.+.+.+-.|+|||.-|++++.||.|++|.-...  ++.  .......+|.|++|.|+.+.++.+. .+.+.+=
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS--tl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK  171 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS--TVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK  171 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH--HHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence            4557889999999999999999999999999999995432  221  1223344799999999887776653 3455555


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      -+......-.   ..             .|.+-|.++.|+|..+++++|++|-..++||-. |..+..-..|+-+|++++
T Consensus       172 pL~~n~k~i~---Wk-------------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva  234 (737)
T KOG1524|consen  172 PLAANSKIIR---WR-------------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVA  234 (737)
T ss_pred             ecccccceeE---Ee-------------ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeee
Confidence            5544332111   12             366799999999999999999999999999976 667777778999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEecccccCCCCCeeEEEeccCCCeEEEEe
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      |+ |+ ..++.++.. ++|     .-+...+.|..++||+||..+++++
T Consensus       235 ~n-pd-~~~~v~S~n-t~R-----~~~p~~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  235 FN-PE-KDYLLWSYN-TAR-----FSSPRVGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             ec-cc-cceeeeeee-eee-----ecCCCccceEEEEEcCCCceeeccc
Confidence            99 77 667776643 344     2345667899999999999998774

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.5e-14  Score=135.41  Aligned_cols=217  Identities=13%  Similarity=0.048  Sum_probs=144.7

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  199 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  199 (372)
                      ..|.-.+++.++||+++++|+|..||.|.+|.--. .........++-|..+|.+++|+++|.+|++|+..|.+-+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            45777799999999999999999999999997543 22223334456677789999999999999999999999999999


Q ss_pred             CCceeeecceeecccccceeccCC------------------------------------CCccccEEEEEEcC------
Q 017421          200 SGTMESLANVTEIHDGLDFSAADD------------------------------------GGYSFGIFSLKFST------  237 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~h~~~i~~~~~sp------  237 (372)
                      +++...+.++......+.++++.+                                    .+...-.+.++++|      
T Consensus       282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            988655555444444444444322                                    00111222233333      


Q ss_pred             -----------------------------------------------CCCEEEEEe--------CCC--eEEEEECCCCe
Q 017421          238 -----------------------------------------------DGRELVAGS--------SDD--CIYVYDLEANK  260 (372)
Q Consensus       238 -----------------------------------------------~~~~l~s~s--------~dg--~i~iwd~~~~~  260 (372)
                                                                     .|.+++|.-        .||  .+++|......
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~  441 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS  441 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence                                                           333443321        111  24444433222


Q ss_pred             EEEE-----eecCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEeccc----------------ccCCCCCeeEEEeccCC
Q 017421          261 LSLR-----ILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLL----------------LTRSINPCNKYLFNPCN  318 (372)
Q Consensus       261 ~~~~-----~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~----------------~~~~~~~v~~~~~s~~g  318 (372)
                      .-..     ...|...+...++.++... .+++++.||.++||-+..                ..-|..++++++|+.||
T Consensus       442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG  521 (792)
T KOG1963|consen  442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG  521 (792)
T ss_pred             ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC
Confidence            1111     1246666666666544444 889999999999999831                11367889999999999


Q ss_pred             CeEEEEeeeeEEEeeceEEEeecccc
Q 017421          319 KYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       319 ~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      ..|+++       ++..|.+||+.+.
T Consensus       522 slla~s-------~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  522 SLLAVS-------FDDTITIWDYDTK  540 (792)
T ss_pred             cEEEEe-------cCCEEEEecCCCh
Confidence            999999       6888888888773

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3.5e-15  Score=127.69  Aligned_cols=192  Identities=15%  Similarity=0.131  Sum_probs=148.1

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEe--eecccCCcceEEEEECCCCCEEEEEeCCCeEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  194 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  194 (372)
                      .+.+|.+-|+++.|+.++++|++|+.|..+.+|+++..  ....+.  .....|...|.+++|....+++++|..+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            45789999999999999999999999999999998742  111111  22446668899999999999999999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EE--EEeecCCCC
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILAHTSD  271 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~--~~~~~~~~~  271 (372)
                      .-|+++.+.+.+....              ...+.|+.+..+|..+.|++.+.++.|.+||.+..+ ..  .........
T Consensus       131 ~HDiEt~qsi~V~~~~--------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~  196 (609)
T KOG4227|consen  131 KHDIETKQSIYVANEN--------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN  196 (609)
T ss_pred             eeecccceeeeeeccc--------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence            9999988765444321              123489999999999999999999999999998765 21  222334567


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------------CCCCCeeEEEeccCCCeEEEE
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .+.+-|+|....+|++.+..+-+-+||++...             .....-.++.|+|+|..+.+-
T Consensus       197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             ceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            78899998889999999999999999997321             212233567788887665543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=3.7e-15  Score=132.31  Aligned_cols=139  Identities=22%  Similarity=0.322  Sum_probs=110.7

Q ss_pred             CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC--------------eEEEEe-----------eecccCCcceEEEEE
Q 017421          124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG--------------WKIQKD-----------ILAKSLRWTVTDTSL  177 (372)
Q Consensus       124 ~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~--------------~~~~~~-----------~~~~~~~~~v~~~~~  177 (372)
                      +..|+|+.|-| +...++++-.+|.+.+||.+..              ......           ....-....|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            47899999999 4456777788999999976421              000000           000111236889999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      +|||++||+.+.||.++|+|..+.+.....+                .+-+...|++|||||++|++|++|--|.||.+.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk----------------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMK----------------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHH----------------hhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence            9999999999999999999999887655554                233589999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEEe
Q 017421          258 ANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      .++.+..-.+|...|..|+|.
T Consensus       363 erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  363 ERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cceEEEeccccccceeeEeec
Confidence            999999999999999999997

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=1.9e-15  Score=136.59  Aligned_cols=202  Identities=12%  Similarity=0.115  Sum_probs=145.2

Q ss_pred             CCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEE----EeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421          123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       123 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw  196 (372)
                      ....|+.+.|.| |...||+++.||.|++|.+..+....    ....+..|...|+++.|+| -...|++++.|.+|++|
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            356789999999 78889999999999999987642211    1123457778899999999 56789999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCC-CCeEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHT-SDVNT  274 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~-~~v~~  274 (372)
                      |+.+++......                ||+..|..++|+|||+.+++.+.||+|++|..++++. ++.-++.. ..--.
T Consensus       706 Dl~~~~~~~~l~----------------gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgAR  769 (1012)
T KOG1445|consen  706 DLANAKLYSRLV----------------GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGAR  769 (1012)
T ss_pred             ehhhhhhhheec----------------cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCccee
Confidence            999887544333                7889999999999999999999999999999987753 32222111 12245


Q ss_pred             EEEeCCCCCEEEEEeCC----CeEEEEecccccCCCCCeeEE---------EeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          275 VCFGDESGHLIYSGSDD----NLCKVNSVLLLTRSINPCNKY---------LFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~v~~~---------~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +.|. -+|+++++.+.|    ..|.+||..++....-.+..+         .+.+|...|+...    + -|..|.++.+
T Consensus       770 i~wa-cdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG----K-GD~~v~~yEv  843 (1012)
T KOG1445|consen  770 ILWA-CDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG----K-GDRFVNMYEV  843 (1012)
T ss_pred             EEEE-ecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec----C-CCceEEEEEe
Confidence            7788 899998887766    458899987665322222222         3445555444332    1 2666777776


Q ss_pred             ccceE
Q 017421          342 FLLRT  346 (372)
Q Consensus       342 ~~~~~  346 (372)
                      ....+
T Consensus       844 ~~esP  848 (1012)
T KOG1445|consen  844 IYESP  848 (1012)
T ss_pred             cCCCc
Confidence            55544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.64  E-value=4.6e-15  Score=124.99  Aligned_cols=238  Identities=13%  Similarity=0.185  Sum_probs=169.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEeeecc----------cCCcceEEEEECCCCC--EEEEE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAK----------SLRWTVTDTSLSPDQR--HLVYA  187 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~----------~~~~~v~~~~~~~~~~--~l~~~  187 (372)
                      ...|.++.|...|.+|++|..+|.|.+|.-+....    .......+          .....|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56789999999999999999999999997554321    11111000          1123688899998654  57778


Q ss_pred             eCCCeEEEEECCCCceeee-ccee-e---------------ccc-ccceecc--CCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          188 SMSPIVHIVDVGSGTMESL-ANVT-E---------------IHD-GLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~-~~~~-~---------------~~~-~~~~~~~--~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                      +.|.+|++|.+........ .... .               .+. -+...|.  -...|..-|+++.++.|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            8999999999865433220 0000 0               000 0000000  0146889999999999999888765 


Q ss_pred             CCeEEEEECCCCeE---EEEeecC-----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-----------------
Q 017421          248 DDCIYVYDLEANKL---SLRILAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-----------------  302 (372)
Q Consensus       248 dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-----------------  302 (372)
                      |-.|.+|++.--..   +..++.+     ..-|++..|+|...+.|+..+..|+|++-|+|.-                 
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            78899999874332   2223333     2367889999888999999999999999999811                 


Q ss_pred             -----cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec-ccceEEEEEeeeEEEeeecccCCccccc
Q 017421          303 -----TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY-FLLRTFYSFMVHILFSGYLHNDHNHRCA  369 (372)
Q Consensus       303 -----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~  369 (372)
                           .+-...|..+.|+++|++|++-.       =-++++||+ -..+++..+.+|......||..++++|.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I  329 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI  329 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence                 02234688999999999998762       267899999 6778999999999999999999999985

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1e-13  Score=129.34  Aligned_cols=203  Identities=16%  Similarity=0.085  Sum_probs=136.9

Q ss_pred             CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeC
Q 017421          114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM  189 (372)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~  189 (372)
                      ...+..+..+...+.+.+|+|||+.|+..+.+   ..|++|++.++....    .........++.|+|||+.|+. .+.
T Consensus       193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----l~~~~g~~~~~~~SpDG~~l~~~~s~  268 (433)
T PRK04922        193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----VASFRGINGAPSFSPDGRRLALTLSR  268 (433)
T ss_pred             CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----eccCCCCccCceECCCCCEEEEEEeC
Confidence            44456677788889999999999999887643   469999998775432    1122334557899999998764 445


Q ss_pred             CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEE
Q 017421          190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSLR  264 (372)
Q Consensus       190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~  264 (372)
                      +|  .|++||+.++....+..                 +......++|+|||+.|+.++. +|  .|.++|+.+++.. .
T Consensus       269 ~g~~~Iy~~d~~~g~~~~lt~-----------------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~  330 (433)
T PRK04922        269 DGNPEIYVMDLGSRQLTRLTN-----------------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-R  330 (433)
T ss_pred             CCCceEEEEECCCCCeEECcc-----------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E
Confidence            55  59999998887543322                 1123456899999998887764 34  4777787776543 3


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL  337 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~  337 (372)
                      +..+......++|+ |+|+.|+..+.++   .|.+||+....    .+......+.|+|||++++..+...   -...+.
T Consensus       331 lt~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~---g~~~L~  406 (433)
T PRK04922        331 LTFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG---GRGVLA  406 (433)
T ss_pred             eecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC---CceEEE
Confidence            33333445578999 9999988765443   58999986322    1222456789999999988764320   023566


Q ss_pred             Eeecc
Q 017421          338 LDNYF  342 (372)
Q Consensus       338 lw~~~  342 (372)
                      +++..
T Consensus       407 ~~~~~  411 (433)
T PRK04922        407 AVSTD  411 (433)
T ss_pred             EEECC
Confidence            66664

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=2.4e-14  Score=119.68  Aligned_cols=207  Identities=12%  Similarity=0.067  Sum_probs=155.8

Q ss_pred             eeEeeeeeCCC---CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421          105 CHMLSRYLPVN---GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       105 ~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (372)
                      .+-++......   ..+.+..|...|++++|+|..+.|++++.|..-+||....+........+..+....+++.|+|.+
T Consensus        33 evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e  112 (361)
T KOG1523|consen   33 EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE  112 (361)
T ss_pred             eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC
Confidence            34444444333   456788999999999999999999999999999999995554444444455666689999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC-----
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-----  256 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~-----  256 (372)
                      +.|++|+....|.||-++...---..+..            ...+.+.|.+++|+|++-+|++|+.|+.+++|..     
T Consensus       113 nkFAVgSgar~isVcy~E~ENdWWVsKhi------------kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~V  180 (361)
T KOG1523|consen  113 NKFAVGSGARLISVCYYEQENDWWVSKHI------------KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGV  180 (361)
T ss_pred             ceEEeccCccEEEEEEEecccceehhhhh------------CCccccceeeeeccCCcceecccccCcceeEEEEeeecc
Confidence            99999999999999987654422111111            1135568999999999999999999999999863     


Q ss_pred             CC-------------CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEecc
Q 017421          257 EA-------------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNP  316 (372)
Q Consensus       257 ~~-------------~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~  316 (372)
                      +.             |+.+..+....+.+..+.|+ |+|..|+..+.|..+.+-|....       ....-+..++.|-.
T Consensus       181 dekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is  259 (361)
T KOG1523|consen  181 DEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS  259 (361)
T ss_pred             ccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence            11             22233343456789999999 99999999999999999886522       22336778888877


Q ss_pred             CCCeEEEE
Q 017421          317 CNKYLIIY  324 (372)
Q Consensus       317 ~g~~l~~~  324 (372)
                      +...++++
T Consensus       260 e~~vv~ag  267 (361)
T KOG1523|consen  260 ENSVVAAG  267 (361)
T ss_pred             CCceeecC
Confidence            77777776

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=6.7e-15  Score=131.41  Aligned_cols=199  Identities=14%  Similarity=0.095  Sum_probs=151.0

Q ss_pred             ccCCceeEeeeeeC--------CCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------e-EEEEeee
Q 017421          100 SAADCCHMLSRYLP--------VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------W-KIQKDIL  164 (372)
Q Consensus       100 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------~-~~~~~~~  164 (372)
                      .+-+..+.+|++..        ....+.+++|.++|.|++..+++..+.+|+.||+|+.|++...      . ...-.-.
T Consensus       312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~  391 (577)
T KOG0642|consen  312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT  391 (577)
T ss_pred             eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence            44445667788822        2235678999999999999999999999999999999965421      1 1111123


Q ss_pred             cccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeec---ccccceecc--------------------
Q 017421          165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI---HDGLDFSAA--------------------  221 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~--------------------  221 (372)
                      +.+|...|+.+++++....|++++.||+++.|+...... ..+.....   +..+.+...                    
T Consensus       392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence            568888999999999999999999999999999866554 11110000   000000000                    


Q ss_pred             ----------CCCC---ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 017421          222 ----------DDGG---YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG  288 (372)
Q Consensus       222 ----------~~~~---h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~  288 (372)
                                ...+   -...++.+.++|.+.+.+++..|+.|+++|..++..+.....|...++++++. |+|-+|+++
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~-~ng~~l~s~  549 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID-PNGPYLMSG  549 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeec-CCCceEEee
Confidence                      0001   12467888999999999999999999999999999999999999999999999 999999999


Q ss_pred             eCCCeEEEEecc
Q 017421          289 SDDNLCKVNSVL  300 (372)
Q Consensus       289 ~~dg~i~vwd~~  300 (372)
                      +.|+.+++|.+.
T Consensus       550 s~d~sv~l~kld  561 (577)
T KOG0642|consen  550 SHDGSVRLWKLD  561 (577)
T ss_pred             cCCceeehhhcc
Confidence            999999999885

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.62  E-value=2.4e-13  Score=122.64  Aligned_cols=201  Identities=12%  Similarity=0.067  Sum_probs=133.4

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG  201 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~  201 (372)
                      .+....++|+|++++|++++. ++.|.+|++++...+........+...+..+.++|+++++++++ .++.|.+||+.+.
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            345678999999998887764 78999999974322111111111222467789999999886655 4699999999863


Q ss_pred             ceeeec--ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCC--C--eEEEEeecC------
Q 017421          202 TMESLA--NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA--N--KLSLRILAH------  268 (372)
Q Consensus       202 ~~~~~~--~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~--~--~~~~~~~~~------  268 (372)
                      ......  .......            ......+.|+|+|++++++.. ++.|.+|+++.  +  +.+..+..+      
T Consensus       159 g~l~~~~~~~~~~~~------------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~  226 (330)
T PRK11028        159 GHLVAQEPAEVTTVE------------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD  226 (330)
T ss_pred             CcccccCCCceecCC------------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence            321100  0000000            124567999999999988776 89999999973  3  233333321      


Q ss_pred             CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecccc------cCC---CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421          269 TSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLL------TRS---INPCNKYLFNPCNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~------~~~---~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                      ......+.++ |++++++++. .++.|.+|++..-      ..+   ......+.|+|+|++|+++..     .+++|.+
T Consensus       227 ~~~~~~i~~~-pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-----~~~~v~v  300 (330)
T PRK11028        227 TRWAADIHIT-PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-----KSHHISV  300 (330)
T ss_pred             CccceeEEEC-CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc-----cCCcEEE
Confidence            1223468899 8999998885 4789999998421      111   124568999999999998741     3788899


Q ss_pred             eecc
Q 017421          339 DNYF  342 (372)
Q Consensus       339 w~~~  342 (372)
                      |++.
T Consensus       301 ~~~~  304 (330)
T PRK11028        301 YEID  304 (330)
T ss_pred             EEEc
Confidence            8764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=6.2e-14  Score=119.05  Aligned_cols=193  Identities=15%  Similarity=0.168  Sum_probs=137.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCc
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ...+..++|++.-..+|++..|-.|++|+-... ....  .....+..|++++|-|. ++.|++|+.. -|.+|......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence            345788999997777889999999999997653 2222  12233447999999994 4567777665 48899875432


Q ss_pred             eeee-cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          203 MESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       203 ~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      .... ......+..-.+   .+.|| .+|++|.|.+||..+++++. |..|.|||..++..+.......+.++-+.|| |
T Consensus       174 n~~r~~~~~s~~~~qvl---~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P  248 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVL---QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P  248 (445)
T ss_pred             ccccccccccccchhhe---eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence            2111 111111111111   12245 69999999999999998876 5679999999998766665566788999999 9


Q ss_pred             CCCEEEEEeCCCeEEEEecc-cc-----cCCCCCeeEEEeccCCCeEEEEe
Q 017421          281 SGHLIYSGSDDNLCKVNSVL-LL-----TRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       281 ~~~~l~s~~~dg~i~vwd~~-~~-----~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      |+.+|+.+.-|+..++|... +.     .-..+.|...+|+|+|++|..+.
T Consensus       249 dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence            99999999999999999543 11     12344899999999999988764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=1e-13  Score=114.25  Aligned_cols=150  Identities=18%  Similarity=0.224  Sum_probs=105.1

Q ss_pred             EEEEECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE--eCCCeEEE
Q 017421          128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI  195 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~v  195 (372)
                      ..+.|+|+|++|++-..          -+...+|.++........... ...++|.+++|+|+++.|++.  ..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            35789999998765332          234556665332222222212 223469999999999987654  35679999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCe
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDV  272 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v  272 (372)
                      ||++. +.  +..+                +...++.+.|+|+|++|++++.   .|.|.+||+++.+.+.... |. .+
T Consensus        88 yd~~~-~~--i~~~----------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~  146 (194)
T PF08662_consen   88 YDVKG-KK--IFSF----------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DA  146 (194)
T ss_pred             EcCcc-cE--eEee----------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cE
Confidence            99972 22  1111                1236789999999999998864   3679999999888877765 43 47


Q ss_pred             EEEEEeCCCCCEEEEEeC------CCeEEEEecc
Q 017421          273 NTVCFGDESGHLIYSGSD------DNLCKVNSVL  300 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~------dg~i~vwd~~  300 (372)
                      +.++|+ |+|++|+++..      |+.++||+..
T Consensus       147 t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  147 TDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEc-CCCCEEEEEEeccceeccccEEEEEec
Confidence            899999 99999998864      6778888864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=1e-14  Score=131.05  Aligned_cols=192  Identities=19%  Similarity=0.171  Sum_probs=151.8

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..|...|..+.|+-.|++|++...+   ..|.|+++.......   .+....+.|.++.|+|...+|++++. ..|++||
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYd  593 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYD  593 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC---chhhcCCceeEEEecCCCceEEEEec-cceEEEe
Confidence            4577889999999999999987553   478899987653322   23344557999999999999888876 6799999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC  276 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~  276 (372)
                      +..+.......                .....|..++.+|.|..|+.|+.|+.+..||+.-. ++.+++.-|...+++|+
T Consensus       594 L~kqelvKkL~----------------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va  657 (733)
T KOG0650|consen  594 LSKQELVKKLL----------------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA  657 (733)
T ss_pred             hhHHHHHHHHh----------------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhh
Confidence            98755422211                12347999999999999999999999999999854 56777888999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEecc---------------cccCCCCC----eeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVL---------------LLTRSINP----CNKYLFNPCNKYLIIYLILVISIYSPNIL  337 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~---------------~~~~~~~~----v~~~~~s~~g~~l~~~~~~~~~~~d~~i~  337 (372)
                      |+ +.-.+|++|+.||++.|+--.               .+.+|...    |..+.|+|..-+|+++.      -|++|+
T Consensus       658 ~H-~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG------Ad~tir  730 (733)
T KOG0650|consen  658 FH-KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG------ADGTIR  730 (733)
T ss_pred             hc-cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecC------CCceEE
Confidence            99 888999999999999987643               34455544    88899999999999875      477777


Q ss_pred             Ee
Q 017421          338 LD  339 (372)
Q Consensus       338 lw  339 (372)
                      ||
T Consensus       731 lf  732 (733)
T KOG0650|consen  731 LF  732 (733)
T ss_pred             ee
Confidence            77

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.61  E-value=5.6e-13  Score=123.17  Aligned_cols=202  Identities=27%  Similarity=0.335  Sum_probs=155.2

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEE-CCCCC-EEEEEeC-CCeEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH  194 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~l~~~~~-dg~i~  194 (372)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+...+. ..........  ..+..+.+ ++++. .++..+. |+.+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence            456789999999999999999999999999999998875 3333221111  35666666 88887 4555444 89999


Q ss_pred             EEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCe
Q 017421          195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV  272 (372)
Q Consensus       195 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v  272 (372)
                      +|+... ........                +|...|..++|+|++..+++++. |+.+++|++..+..+..+..|...|
T Consensus       138 ~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  201 (466)
T COG2319         138 LWDLSTPGKLIRTLE----------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV  201 (466)
T ss_pred             EEEecCCCeEEEEEe----------------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence            999987 33222222                46678999999999998888885 9999999999988888888899999


Q ss_pred             EEEEEeCCCCC-EEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          273 NTVCFGDESGH-LIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       273 ~~~~~sp~~~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      .+++|+ |++. .+++++.|+.|++||..       .+..|...+ ...|+|++.+++++.      .|+.+++|+....
T Consensus       202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~d~~~~~~~~~~~  273 (466)
T COG2319         202 SSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS------SDGTIRLWDLRSS  273 (466)
T ss_pred             EEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec------CCCcEEEeeecCC
Confidence            999999 8887 55555899999999876       233454543 338999997777553      5888999988766


Q ss_pred             eE
Q 017421          345 RT  346 (372)
Q Consensus       345 ~~  346 (372)
                      ..
T Consensus       274 ~~  275 (466)
T COG2319         274 SS  275 (466)
T ss_pred             Cc
Confidence            64

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.60  E-value=1.3e-15  Score=141.48  Aligned_cols=213  Identities=15%  Similarity=0.180  Sum_probs=168.6

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|..+|+|+.|...|.++++|+.|..++||..++..++..   ..+|.+.|+.++.+....++++++.|..|++|.
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            34689999999999999999999999999999999998877765   779999999999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe----e-cCCCCe
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----L-AHTSDV  272 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~-~~~~~v  272 (372)
                      +..+..+.+..                ||++.|++++|+|-.    +.+.||++++||.+ ...+...    . ....-+
T Consensus       261 l~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~  319 (1113)
T KOG0644|consen  261 LPDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLV  319 (1113)
T ss_pred             cCCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccce
Confidence            99998766655                788999999999953    77889999999988 2111111    1 123456


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEecccccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      .++.|. .++.-++|++.|+.-..|....+..+...+.-+.++.+-..+...     ...+-.+.+|++.+|..+..+++
T Consensus       320 ~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~-----ar~~~~~~vwnl~~g~l~H~l~g  393 (1113)
T KOG0644|consen  320 DSILFE-NNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVT-----ARNDHRLCVWNLYTGQLLHNLMG  393 (1113)
T ss_pred             eeeecc-ccccccccccCCcccccchhhHhhhhccceEEEecccccccccee-----eeeeeEeeeeecccchhhhhhcc
Confidence            677787 889999999999999999887766666655555555443322222     22577889999999988888888


Q ss_pred             eEEEeeec
Q 017421          353 HILFSGYL  360 (372)
Q Consensus       353 h~~~~~~~  360 (372)
                      |....-.|
T Consensus       394 hsd~~yvL  401 (1113)
T KOG0644|consen  394 HSDEVYVL  401 (1113)
T ss_pred             cccceeee
Confidence            86554444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3e-13  Score=125.87  Aligned_cols=189  Identities=16%  Similarity=0.115  Sum_probs=124.6

Q ss_pred             CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeC
Q 017421          114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM  189 (372)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~  189 (372)
                      ...+..+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++.....    ......+....|+|||+.|+. .+.
T Consensus       185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l----~~~~g~~~~~~~SPDG~~la~~~~~  260 (427)
T PRK02889        185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV----ANFKGSNSAPAWSPDGRTLAVALSR  260 (427)
T ss_pred             CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe----ecCCCCccceEECCCCCEEEEEEcc
Confidence            33445566778889999999999999877643   3599999988754321    122234668999999998875 566


Q ss_pred             CCeEEEE--ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCeEEEE
Q 017421          190 SPIVHIV--DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVY--DLEANKLSLR  264 (372)
Q Consensus       190 dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iw--d~~~~~~~~~  264 (372)
                      +|...+|  |+.++....+..                 +........|+|||+.|+..+. ++...+|  ++.+++. ..
T Consensus       261 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~  322 (427)
T PRK02889        261 DGNSQIYTVNADGSGLRRLTQ-----------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR  322 (427)
T ss_pred             CCCceEEEEECCCCCcEECCC-----------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EE
Confidence            7765555  455444322211                 1123456789999998886654 3555555  4455543 22


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEe
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +..+.......+|+ |+|++|+..+.++   .|.+||+....    ........+.|+|||+.|+.+.
T Consensus       323 lt~~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        323 VTFTGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             EecCCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEE
Confidence            22233344568899 9999998777554   59999986322    1122346789999999998775

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.59  E-value=1.9e-13  Score=124.54  Aligned_cols=202  Identities=15%  Similarity=0.155  Sum_probs=148.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      .|+.++|-|||..|+.+.. ..+.+||...|..+..   +++|+..|.+++|+.||+.+++|+.|..|.+|..+-.....
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqt---LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQP---LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccc---cccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence            7899999999998877665 4699999999977665   78999999999999999999999999999999865433211


Q ss_pred             ecceeecccccceeccCC----------------------CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 017421          206 LANVTEIHDGLDFSAADD----------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL  263 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~----------------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  263 (372)
                       .......+-+.|.|-+.                      ..-...+.+.+|..||++++.|-.+|+|.+-+-. ++...
T Consensus        90 -YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~  167 (1081)
T KOG1538|consen   90 -YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKV  167 (1081)
T ss_pred             -eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcce
Confidence             11112222222333211                      1234678899999999999999999999988643 44434


Q ss_pred             Eee---cCCCCeEEEEEeCCCC----CEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEE-eeeeEE
Q 017421          264 RIL---AHTSDVNTVCFGDESG----HLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIY-LILVIS  330 (372)
Q Consensus       264 ~~~---~~~~~v~~~~~sp~~~----~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~-~~~~~~  330 (372)
                      .+.   +...+|.+++|+|..|    ..+++.....++.+|.+.-     -+...-...++.+.|+|.++..| +++.+.
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS  247 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence            443   4677999999995544    4788888888888888751     12334456788999999998876 566676


Q ss_pred             Eee
Q 017421          331 IYS  333 (372)
Q Consensus       331 ~~d  333 (372)
                      +|.
T Consensus       248 ~fT  250 (1081)
T KOG1538|consen  248 LFT  250 (1081)
T ss_pred             EEe
Confidence            665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=3.1e-14  Score=123.11  Aligned_cols=188  Identities=18%  Similarity=0.136  Sum_probs=143.3

Q ss_pred             cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421           99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      ..+.|..+++|++........+..|...|.+++|+|||++|++.+.| ..+||+++++..+.... .......+..+.|+
T Consensus       161 tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-~~~k~~~~~~cRF~  238 (398)
T KOG0771|consen  161 TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-PFSKDEMFSSCRFS  238 (398)
T ss_pred             eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC-Ccccchhhhhceec
Confidence            35667789999988888888888999999999999999999999998 89999999985554432 23445567888998


Q ss_pred             CCC---CEE--EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 017421          179 PDQ---RHL--VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV  253 (372)
Q Consensus       179 ~~~---~~l--~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i  253 (372)
                      .|+   .++  +.....+.|..|++...............           .-...|++++.+++|++++.|+.||.|-|
T Consensus       239 ~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-----------~~~~siSsl~VS~dGkf~AlGT~dGsVai  307 (398)
T KOG0771|consen  239 VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-----------KRFKSISSLAVSDDGKFLALGTMDGSVAI  307 (398)
T ss_pred             ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-----------hccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence            877   333  33344566777776533221111111000           01137999999999999999999999999


Q ss_pred             EECCCCeEEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          254 YDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       254 wd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      ++..+-+.++-.+ .|...|+.+.|+ |+.+++++.+.|....|..+.
T Consensus       308 ~~~~~lq~~~~vk~aH~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  308 YDAKSLQRLQYVKEAHLGFVTGLTFS-PDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEeceeeeeEeehhhheeeeeeEEEc-CCcCcccccccCCceeEEEEe
Confidence            9999888766654 799999999999 999999999999888887764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.58  E-value=6.8e-14  Score=124.35  Aligned_cols=171  Identities=16%  Similarity=0.195  Sum_probs=133.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL  216 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  216 (372)
                      ..|+.++.||.+.|.+-. + .+..  ....|.+.+.+-.|+|||.-|++++.||.|++|.-. |.......        
T Consensus        76 d~~~i~s~DGkf~il~k~-~-rVE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~--------  142 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-A-RVER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVV--------  142 (737)
T ss_pred             ceEEEEcCCceEEEeccc-c-hhhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHh--------
Confidence            468888999999888743 3 2222  245788889999999999999999999999999853 43322211        


Q ss_pred             ceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEE
Q 017421          217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV  296 (372)
Q Consensus       217 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~v  296 (372)
                              ....+|.|++|.|+.+.++.+. .+.+.|=.+.....+..+++|.+-|.++.|+ +..+++++|+.|-..++
T Consensus       143 --------Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv  212 (737)
T KOG1524|consen  143 --------QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI  212 (737)
T ss_pred             --------hcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence                    1223899999999987666554 4667777777777778889999999999999 99999999999999999


Q ss_pred             Eecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          297 NSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       297 wd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      ||-.     +...|..+|++++|.|+ +..+.++-.+.++
T Consensus       213 WD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~  251 (737)
T KOG1524|consen  213 WDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARF  251 (737)
T ss_pred             ecccCcccccCChhccceeeeeeccc-cceeeeeeeeeee
Confidence            9975     34578899999999999 6666665555554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=7.5e-13  Score=106.81  Aligned_cols=188  Identities=12%  Similarity=0.080  Sum_probs=134.4

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------EEEeeecccCC-----cceEEEEECCCCCEEEEEe
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLR-----WTVTDTSLSPDQRHLVYAS  188 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~  188 (372)
                      ++.|.++|+.++|.  ..+|++|+ ||.|+=|.......      +.... .+-+.     -.|.++...|..+-++.++
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~-~P~~~~~~evPeINam~ldP~enSi~~Ag  133 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVK-IPMQVDAVEVPEINAMWLDPSENSILFAG  133 (325)
T ss_pred             ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhc-CccccCcccCCccceeEeccCCCcEEEec
Confidence            47899999999998  55667665 49999887654311      00000 01111     1588999999888888888


Q ss_pred             CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 017421          189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH  268 (372)
Q Consensus       189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  268 (372)
                      .|+.++-||+++|+.....+                ||+..|.++.--.....+++|++||++++||+++++++..+...
T Consensus       134 GD~~~y~~dlE~G~i~r~~r----------------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y  197 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRIQREYR----------------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY  197 (325)
T ss_pred             CCeEEEEEEecCCEEEEEEc----------------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence            99999999999999876665                89999999987444557899999999999999999988887532


Q ss_pred             ----------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          269 ----------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       269 ----------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                                ...|-+++.   +..+++.| ....+.+|.++...     ....++..+.|..| ..|+.+-+..+..|
T Consensus       198 k~~~~lRp~~g~wigala~---~edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  198 KNPNLLRPDWGKWIGALAV---NEDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSY  271 (325)
T ss_pred             cChhhcCcccCceeEEEec---cCceEEec-CCCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeee
Confidence                      123445544   45677766 45679999998543     45567777888665 45555534444433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.55  E-value=3e-14  Score=116.07  Aligned_cols=162  Identities=18%  Similarity=0.248  Sum_probs=125.1

Q ss_pred             CCCceEEEEECC-CCC--EEEEEeCCCcEEEEeCCCCeEEEE-------eeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421          123 TTSRAYVSQFSA-DGS--LFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPDQRHLVYASMSPI  192 (372)
Q Consensus       123 ~~~~v~~~~~s~-~~~--~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  192 (372)
                      ..+.+.|..+.. ++.  ++++|..+|.+.+||+.++..+..       ......|..+|.++.|.+.-..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            356677776533 333  456788899999999998633221       2234577889999999986665677777888


Q ss_pred             EEEEECCCC--ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421          193 VHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       193 i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      +..|.++..  .+.........+              -.|..+..-||++.+|+++.|+.|+||..++.+++..++.|..
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lkn--------------pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa  294 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKN--------------PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA  294 (323)
T ss_pred             ceeeeeccccCcccccceEEecC--------------CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence            888988654  221111111111              1578889999999999999999999999999999999999999


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      .|.+++|+ |+..++|.++.|+.|.+|++
T Consensus       295 gvn~vAfs-pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  295 GVNAVAFS-PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceeEEEeC-CCCchhhhccCCceEEeeec
Confidence            99999999 99999999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.55  E-value=1.6e-14  Score=126.13  Aligned_cols=197  Identities=13%  Similarity=0.120  Sum_probs=162.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      .-..+.+.++.+|++++.|+.-|.|-.+|..++.....+..    ...|.++.|-.+.+++|++ ....++|||-..-+.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTEL  203 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEE
Confidence            44667899999999999999999999999999865554332    2368999999999888877 457899999775554


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      -++..                  ...|..+.|-|..-+|++++..|.++--|+.+|+.+..+..-.+.+..++-+ |-..
T Consensus       204 HClk~------------------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~Na  264 (545)
T KOG1272|consen  204 HCLKR------------------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNA  264 (545)
T ss_pred             eehhh------------------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccc
Confidence            33332                  1378899999998888999999999999999999998888888889999999 7788


Q ss_pred             EEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          284 LIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       284 ~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      .+-+|...|+|.+|....      +..|.++|.++++.++|++++++.      -|..+++||+..-..+.++
T Consensus       265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc------cccceeEeeecccccccee
Confidence            999999999999999873      348999999999999999999875      5888888988776654443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.1e-12  Score=125.35  Aligned_cols=210  Identities=14%  Similarity=0.076  Sum_probs=147.5

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECC
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVG  199 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~  199 (372)
                      +...+...+.|+|-...++++...-.|+|||.+.++.+..+.........|+.+.+-.  |..++++++.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            3445677788999899999988777899999999877666544444455788888865  56789999999999999854


Q ss_pred             CCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEE
Q 017421          200 SGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVC  276 (372)
Q Consensus       200 ~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~  276 (372)
                      ...  ...+........+.....      .+.=.-++|.....+|+++++-..|+|||....+....+. +.+..|+++.
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~------r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGA------RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred             ccccCCceeEEeeccccccCccC------CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence            321  111111111111111111      1111456787766667666667889999999888777776 3455777776


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccc---------ccCCCCC--eeEEEeccCCCe-EEEEeeeeEEEeeceEEEeeccc
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLL---------LTRSINP--CNKYLFNPCNKY-LIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~--v~~~~~s~~g~~-l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      -+-..|+.|++|-.||.|++||.|.         .+.|...  |..+.+.+.|-- |++++      -||.|++||...
T Consensus      1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs------~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS------QDGDIQLLDLRM 1288 (1387)
T ss_pred             ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec------cCCeEEEEeccc
Confidence            6546689999999999999999983         2356666  999999887654 66654      478888888776

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=7.2e-12  Score=116.90  Aligned_cols=189  Identities=16%  Similarity=0.156  Sum_probs=131.5

Q ss_pred             CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eC
Q 017421          114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM  189 (372)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  189 (372)
                      ...+..+..+...+...+|+|||++|+.+..+   ..|++|++.++....    ...+...+.++.|+||++.|+.. +.
T Consensus       179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~l~~~~~~  254 (417)
T TIGR02800       179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSKLAVSLSK  254 (417)
T ss_pred             CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCEEEEEECC
Confidence            34456666777789999999999999887654   479999998874332    12233456678999999987754 33


Q ss_pred             CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEE
Q 017421          190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLR  264 (372)
Q Consensus       190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~  264 (372)
                      ++  .|++||+.++....+..                 +........|+|||+.|+..+.. +  .|.++|+.+++. ..
T Consensus       255 ~~~~~i~~~d~~~~~~~~l~~-----------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~  316 (417)
T TIGR02800       255 DGNPDIYVMDLDGKQLTRLTN-----------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RR  316 (417)
T ss_pred             CCCccEEEEECCCCCEEECCC-----------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence            43  58899998776533322                 11234457899999988766543 3  588888887664 34


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEe
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +..+...+..+.|+ |+|++|+.++.++   .|.+||+....    ..........|+|+|++|+...
T Consensus       317 l~~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       317 LTFRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             eecCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEE
Confidence            44455667788999 8999998887765   78888876321    1122345678999999888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=1.5e-14  Score=126.40  Aligned_cols=187  Identities=15%  Similarity=0.188  Sum_probs=148.3

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  201 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  201 (372)
                      .-...|..+.|-.+.++||++- ...++|||-. |..+..   +..+. .|..+.|-|.--+|++++..|.++.-|+.+|
T Consensus       168 ~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHC---lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G  241 (545)
T KOG1272|consen  168 NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHC---LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG  241 (545)
T ss_pred             ehhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEee---hhhcC-chhhhcccchhheeeecccCCceEEEeechh
Confidence            3456788888888888887764 4789999954 545554   33443 5899999999889999999999999999999


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  281 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  281 (372)
                      +........                .+.+..|+-+|-+..+-+|...|+|.+|.....+++..+-.|.++|.++++. ++
T Consensus       242 klVa~~~t~----------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~-~~  304 (545)
T KOG1272|consen  242 KLVASIRTG----------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVD-RG  304 (545)
T ss_pred             hhhHHHHcc----------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEEC-CC
Confidence            976555432                2367788889988889999999999999999999988888999999999999 99


Q ss_pred             CCEEEEEeCCCeEEEEecccccC-----CCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          282 GHLIYSGSDDNLCKVNSVLLLTR-----SINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      |++++|.+.|..++|||++.+..     ...+...++||..| .||++.+..+.+|
T Consensus       305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  305 GRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIW  359 (545)
T ss_pred             CcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeee
Confidence            99999999999999999995431     13567788888765 5666643333333

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=7.8e-12  Score=117.54  Aligned_cols=238  Identities=15%  Similarity=0.138  Sum_probs=174.5

Q ss_pred             cCCCCcc--ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeEEEEeeec--
Q 017421           93 YSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQKDILA--  165 (372)
Q Consensus        93 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--  165 (372)
                      |+.+.++  ..-...+.++..........+.+|..++..+.+.|..   .++.+++.+|.|++||...+..+......  
T Consensus        24 fSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~  103 (792)
T KOG1963|consen   24 FSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP  103 (792)
T ss_pred             cccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc
Confidence            3444443  4445556666666777777899999999999998854   35678999999999998765333211000  


Q ss_pred             --------------------------------------------------------------------------------
Q 017421          166 --------------------------------------------------------------------------------  165 (372)
Q Consensus       166 --------------------------------------------------------------------------------  165 (372)
                                                                                                      
T Consensus       104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~  183 (792)
T KOG1963|consen  104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI  183 (792)
T ss_pred             eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence                                                                                            


Q ss_pred             ------------------ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC--CceeeecceeecccccceeccCCCC
Q 017421          166 ------------------KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGG  225 (372)
Q Consensus       166 ------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
                                        ..|...+++.+++|.++++++|..||+|.+|.--.  +... ......             -
T Consensus       184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~-t~t~lH-------------W  249 (792)
T KOG1963|consen  184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE-TCTLLH-------------W  249 (792)
T ss_pred             EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc-cceEEE-------------e
Confidence                              03444578899999999999999999999997543  1111 111111             2


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--
Q 017421          226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--  303 (372)
Q Consensus       226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--  303 (372)
                      |...|++++|+++|.+|++|+..|.+-+|.+.+++ .+-++.-.++|..+.++ ||+.+.++...|+.|.+.....+.  
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k  327 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIK  327 (792)
T ss_pred             cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhh
Confidence            66799999999999999999999999999999988 34556677899999999 999999999999999998764211  


Q ss_pred             ---------------CCCCCeeEEEeccC-CCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          304 ---------------RSINPCNKYLFNPC-NKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       304 ---------------~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                                     ....-.+.++++|- +..+..+       -.+.++++|+.+.+.++.+.+.
T Consensus       328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~-------~~g~vQ~ydl~td~~i~~~~v~  386 (792)
T KOG1963|consen  328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG-------HPGHVQFYDLYTDSTIYKLQVC  386 (792)
T ss_pred             hhccCccCCCccccccccccceeEEEcCCCCceeecC-------CCceEEEEeccccceeeeEEEE
Confidence                           12334577888884 3333334       4688889999999888777654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=1.5e-11  Score=103.04  Aligned_cols=176  Identities=14%  Similarity=0.130  Sum_probs=123.6

Q ss_pred             eeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCE
Q 017421          105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRH  183 (372)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (372)
                      .+++|+...... ..--....+|.++.++++  .|++.- .+.|+||...+. +.+...... ..+....++.-..+...
T Consensus        76 kviIWDD~k~~~-i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~-~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   76 KVIIWDDLKERC-IIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETR-SNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             eEEEEecccCcE-EEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecc-cCCCceEeecCCCCceE
Confidence            466777443332 222345788999999854  466554 478999999854 333332222 22222333333324444


Q ss_pred             EEE-EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeE
Q 017421          184 LVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-IYVYDLEANKL  261 (372)
Q Consensus       184 l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-i~iwd~~~~~~  261 (372)
                      |+. |-.-|.|.|-|+...+......+ .             .|.+.|.|++.+-+|..+||+|..|+ |+|||..+|+.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I-~-------------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~  216 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSII-N-------------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL  216 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEE-E-------------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence            544 44579999999987654211111 1             47889999999999999999999998 89999999999


Q ss_pred             EEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          262 SLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       262 ~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +..+..  ....|++++|| |+..+|+++|..|+|+|+.++
T Consensus       217 l~E~RRG~d~A~iy~iaFS-p~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  217 LQELRRGVDRADIYCIAFS-PNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             eeeeecCCchheEEEEEeC-CCccEEEEEcCCCeEEEEEee
Confidence            988873  33589999999 999999999999999999987

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.7e-11  Score=114.58  Aligned_cols=208  Identities=13%  Similarity=0.040  Sum_probs=129.3

Q ss_pred             CCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCC
Q 017421          116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSP  191 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg  191 (372)
                      ....+..+...+....|+|||+.|+..+.+   ..|++||+.+++... ....   ........|+|||+.|+.. ..+|
T Consensus       209 ~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~---~g~~~~~~wSPDG~~La~~~~~~g  284 (448)
T PRK04792        209 NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF---PGINGAPRFSPDGKKLALVLSKDG  284 (448)
T ss_pred             CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC---CCCcCCeeECCCCCEEEEEEeCCC
Confidence            345566677788999999999999876543   258899998774322 1112   2234578999999988754 5556


Q ss_pred             e--EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEEee
Q 017421          192 I--VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSLRIL  266 (372)
Q Consensus       192 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~  266 (372)
                      .  |+++|+.+++...+..                 +.......+|+|||+.|+..+. ++  .|.++|+.+++... +.
T Consensus       285 ~~~Iy~~dl~tg~~~~lt~-----------------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt  346 (448)
T PRK04792        285 QPEIYVVDIATKALTRITR-----------------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT  346 (448)
T ss_pred             CeEEEEEECCCCCeEECcc-----------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence            4  8888988776543322                 1124567899999998876654 33  57777888776433 32


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeC-CCe--EEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSD-DNL--CKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~-dg~--i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                      .........+|+ |+|++|+..+. ++.  |.++|+....    ..........|+|||+.|+......-   ...+.++
T Consensus       347 ~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g---~~~l~~~  422 (448)
T PRK04792        347 FEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQG---KQVLAAV  422 (448)
T ss_pred             cCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCC---ceEEEEE
Confidence            222333457899 89988877654 443  4455654321    11112345689999999886642110   1235666


Q ss_pred             ecccceEEEEE
Q 017421          340 NYFLLRTFYSF  350 (372)
Q Consensus       340 ~~~~~~~~~~~  350 (372)
                      +. +|+..+.+
T Consensus       423 ~~-~G~~~~~l  432 (448)
T PRK04792        423 SI-DGRFKARL  432 (448)
T ss_pred             EC-CCCceEEC
Confidence            65 45544444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.8e-11  Score=114.48  Aligned_cols=189  Identities=14%  Similarity=0.104  Sum_probs=126.0

Q ss_pred             CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eC
Q 017421          114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM  189 (372)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  189 (372)
                      ...+..+..+...+....|+|||+.|+..+.+   ..|.+|++.++....    .....+.+....|+|||+.|+.. ..
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~la~~~~~  263 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSKLAFVLSK  263 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCEEEEEEcc
Confidence            33455666778889999999999999876543   368999998874422    11222345578999999988754 44


Q ss_pred             CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCeEEEE
Q 017421          190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSLR  264 (372)
Q Consensus       190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d--g~i~iwd~~~~~~~~~  264 (372)
                      +|  .|++||+.++....+..                 +........|+|||+.|+..+. +  ..|.++|+.+++... 
T Consensus       264 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-  325 (430)
T PRK00178        264 DGNPEIYVMDLASRQLSRVTN-----------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-  325 (430)
T ss_pred             CCCceEEEEECCCCCeEEccc-----------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-
Confidence            44  68889998876543322                 1123456789999998876654 3  358888888776433 


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEeCC-C--eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEe
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGSDD-N--LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~~d-g--~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +...........|+ |+|+.|+..+.+ +  .|.+||+.+..    ..........|+|||+.++.+.
T Consensus       326 lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        326 VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEE
Confidence            22222334467899 899988877643 3  47788876322    1122334678999999998764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.50  E-value=1.5e-13  Score=115.45  Aligned_cols=227  Identities=15%  Similarity=0.189  Sum_probs=153.3

Q ss_pred             CccCCCCccccCCce--eEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeeccc
Q 017421           91 GNYSGRGRFSAADCC--HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKS  167 (372)
Q Consensus        91 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~  167 (372)
                      ..|++.+.+.+.-..  +.+.+....+ ...+-..-..|.-+.|..|.-+++++ ..++.|.+|++...+--.+   ...
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck---Ide   89 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK---IDE   89 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE---ecc
Confidence            356777777443322  2232222222 22222235677788999988777654 6788999999987754444   345


Q ss_pred             CCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          168 LRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       168 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      .+.++.++.|+|||+.|+.. ..+-.|.||.+.+.+...+....                 ..+..++|+|||++.+..+
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK-----------------~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK-----------------TNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc-----------------cCceeEEECCCCceeeeee
Confidence            55679999999999877655 45889999999987754333211                 2567899999999988776


Q ss_pred             CCCe---EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC--CCeEEEEecccccCCCCCeeEEEeccCCCeE
Q 017421          247 SDDC---IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD--DNLCKVNSVLLLTRSINPCNKYLFNPCNKYL  321 (372)
Q Consensus       247 ~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l  321 (372)
                      ....   +.|...+....+..+...+-..+.+.|+ |||+.|++-..  +-.|..|.      -.-.+..+.|+|.+++|
T Consensus       153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-Pdg~~laVwd~~Leykv~aYe------~~lG~k~v~wsP~~qfl  225 (447)
T KOG4497|consen  153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-PDGNWLAVWDNVLEYKVYAYE------RGLGLKFVEWSPCNQFL  225 (447)
T ss_pred             cccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-CCCcEEEEecchhhheeeeee------eccceeEEEeccccceE
Confidence            5322   3333333444555566566678899999 99998876432  22333332      23578889999999999


Q ss_pred             EEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          322 IIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      ++|+      ||+.+++-+-.+.+++..|.
T Consensus       226 avGs------yD~~lrvlnh~tWk~f~efl  249 (447)
T KOG4497|consen  226 AVGS------YDQMLRVLNHFTWKPFGEFL  249 (447)
T ss_pred             Eeec------cchhhhhhceeeeeehhhhc
Confidence            9998      89999998888888776553

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=2.6e-12  Score=110.32  Aligned_cols=208  Identities=11%  Similarity=0.066  Sum_probs=149.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE-eeecccCCcceEEEEECCCCC-EEEEEeCC--CeEEEEEC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQR-HLVYASMS--PIVHIVDV  198 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~vwd~  198 (372)
                      ...+|-.++.. || .|++|-.+|.+.+|....+..-.. ......+ ..+..+.-++... .+++|+..  ..+++||+
T Consensus       104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence            34556665554 33 577778889999999884421111 1111122 2466777777444 45568888  78999999


Q ss_pred             CCCceeeecceee-cccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEE
Q 017421          199 GSGTMESLANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT  274 (372)
Q Consensus       199 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  274 (372)
                      +..+.+....... ..-++.        -.-.++.+.|-|.  ...|++++.-+.+++||.+.+ +++..+.-.+.++++
T Consensus       181 e~~~qiw~aKNvpnD~L~Lr--------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~  252 (412)
T KOG3881|consen  181 EQSKQIWSAKNVPNDRLGLR--------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS  252 (412)
T ss_pred             ccceeeeeccCCCCccccce--------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence            9875432222111 111111        1126778899887  789999999999999999865 477778778889999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      +... |+++++++|..-|.+..||++.       +++..+.|+++..+|.++++++++      -|..++++|+.+.+.+
T Consensus       253 ~~l~-p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  253 TGLT-PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKTRKLL  325 (412)
T ss_pred             eeec-CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeecccchhh
Confidence            9999 9999999999999999999983       456788999999999999999884      4888888888886654


Q ss_pred             E
Q 017421          348 Y  348 (372)
Q Consensus       348 ~  348 (372)
                      .
T Consensus       326 ~  326 (412)
T KOG3881|consen  326 H  326 (412)
T ss_pred             h
Confidence            4

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=3.5e-12  Score=121.91  Aligned_cols=220  Identities=20%  Similarity=0.190  Sum_probs=150.3

Q ss_pred             ccCCceeEeeeeeCCC--CCccc------cCC----CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc
Q 017421          100 SAADCCHMLSRYLPVN--GPWPV------DQT----TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS  167 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~--~~~~~------~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  167 (372)
                      .+.|..+++|+.....  .+...      .++    .+.-.-++|.....+|++++.-..|+|||......+....  .+
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP--~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP--YG 1206 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc--cC
Confidence            4556678888887763  22211      111    1122445787766666666667899999998775554422  23


Q ss_pred             CCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcccc--EEEEEEcCCCC-EEE
Q 017421          168 LRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGR-ELV  243 (372)
Q Consensus       168 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~sp~~~-~l~  243 (372)
                      ...-|++++-+. .|+.++.|..||.|++||.+.............             |+..  |..+.+.+.|- .|+
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-------------h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-------------HNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc-------------cCCcccceeEEeecCCCccee
Confidence            344567665544 469999999999999999987655433333332             4444  99999998764 599


Q ss_pred             EEeCCCeEEEEECCCCe--EEEEeecCC---CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----c-------ccCCC
Q 017421          244 AGSSDDCIYVYDLEANK--LSLRILAHT---SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----L-------LTRSI  306 (372)
Q Consensus       244 s~s~dg~i~iwd~~~~~--~~~~~~~~~---~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~-------~~~~~  306 (372)
                      +|+.+|.|++||++...  ...++..|-   +.++++..+ ++...+|+|+. +.|+||++.     .       +....
T Consensus      1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH-~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH-EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRI 1351 (1387)
T ss_pred             eeccCCeEEEEecccCcccccceeeeccccCccceeeeec-cCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcC
Confidence            99999999999999742  222333332   359999999 99999999988 999999985     1       11344


Q ss_pred             CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      ..+.+++|+|.--.+++|.      -|..|.++...
T Consensus      1352 gs~scL~FHP~~~llAaG~------~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGS------ADSTVSIYSCE 1381 (1387)
T ss_pred             CCcceeeecchhHhhhhcc------CCceEEEeecC
Confidence            5679999999988888874      34555555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.48  E-value=5.8e-12  Score=122.18  Aligned_cols=220  Identities=9%  Similarity=0.042  Sum_probs=148.0

Q ss_pred             cccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCC----eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421          119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  193 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  193 (372)
                      .+..|...|..++.++.. .+|++|+.||+|++|++..-    ...+..........++..+.+.+.+..+|+++.||.|
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            456788889899887754 99999999999999998642    1122222233345579999999999999999999999


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCeEEEEee--cCC
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHT  269 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~  269 (372)
                      .+.+++............-...       +.+...-+..-+|.. ++. .++.++..+.|..||++......+++  ...
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n-------~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPN-------LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EEEEccccccccceeeeeeccc-------ccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            9999876321111000000000       001111233333332 233 67888888999999999876554443  334


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCC---eEEEEeeeeEEEeeceEEEe
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNK---YLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~d~~i~lw  339 (372)
                      +.|++++.+ |.++++++|+..|.+.+||+|...       ++..++..+..+|-..   ..++++..    -.+.+.+|
T Consensus      1196 G~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~nevs~w 1270 (1431)
T KOG1240|consen 1196 GLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNNEVSTW 1270 (1431)
T ss_pred             cceeEEEec-CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCCceeee
Confidence            789999999 999999999999999999998321       4557777777776533   44444211    35778899


Q ss_pred             ecccceEEEEE
Q 017421          340 NYFLLRTFYSF  350 (372)
Q Consensus       340 ~~~~~~~~~~~  350 (372)
                      +..+|..-+.|
T Consensus      1271 n~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1271 NMETGLRQTVL 1281 (1431)
T ss_pred             ecccCcceEEE
Confidence            98888655544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.5e-12  Score=121.32  Aligned_cols=170  Identities=17%  Similarity=0.152  Sum_probs=116.3

Q ss_pred             CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceecc
Q 017421          145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA  221 (372)
Q Consensus       145 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  221 (372)
                      +..|.+||..... ...   ...+...+.+..|+|||+.|+.++.+   ..|++||+.++....+....           
T Consensus       183 ~~~i~i~d~dg~~-~~~---lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-----------  247 (429)
T PRK01742        183 PYEVRVADYDGFN-QFI---VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-----------  247 (429)
T ss_pred             eEEEEEECCCCCC-ceE---eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence            4689999987653 222   33455679999999999999987653   46999999887643332211           


Q ss_pred             CCCCccccEEEEEEcCCCCEEEEEe-CCCeEE--EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEE
Q 017421          222 DDGGYSFGIFSLKFSTDGRELVAGS-SDDCIY--VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVN  297 (372)
Q Consensus       222 ~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~--iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vw  297 (372)
                         +   ....++|+|||+.|+.+. .+|.+.  +||+.+++. ..+..+...+..+.|+ |||+.|+.++ .++...||
T Consensus       248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~  319 (429)
T PRK01742        248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY  319 (429)
T ss_pred             ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence               1   233689999999888764 577654  556666654 4556677778899999 8998776554 57888898


Q ss_pred             eccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          298 SVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       298 d~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      ++....      .+..  ..+.|+|||+.|+....       ..+.+||+.+++.
T Consensus       320 ~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~  365 (429)
T PRK01742        320 RMSASGGGASLVGGRG--YSAQISADGKTLVMING-------DNVVKQDLTSGST  365 (429)
T ss_pred             EEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-------CCEEEEECCCCCe
Confidence            875211      1221  46789999999987743       2345566666543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=3.5e-12  Score=114.53  Aligned_cols=205  Identities=12%  Similarity=0.091  Sum_probs=142.6

Q ss_pred             CCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEE---------eeecc-----------------------cC
Q 017421          122 QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQK---------DILAK-----------------------SL  168 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~---------~~~~~-----------------------~~  168 (372)
                      .|+..-+.|..+|||+++ |+|.+--.|++||+.+-.....         +..+.                       .+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            467888899999999986 6778888999999876421110         00000                       00


Q ss_pred             ----CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          169 ----RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       169 ----~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                          +..-..++++.-..-|++++....|+-++++.|........                ....++++..++...+|++
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~----------------~~~~lN~v~in~~hgLla~  192 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET----------------DSGELNVVSINEEHGLLAC  192 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc----------------ccccceeeeecCccceEEe
Confidence                00112333333223355555556788888888876444332                2248999999999999999


Q ss_pred             EeCCCeEEEEECCCCeEEEEee------cCCC-----CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCC
Q 017421          245 GSSDDCIYVYDLEANKLSLRIL------AHTS-----DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSI  306 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~~------~~~~-----~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~  306 (372)
                      |+.+|.|..||.++...+.++.      .|.+     .|+++.|+ .+|-.+++|..+|.+.|||+++-.       ...
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e  271 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE  271 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence            9999999999999877655554      2333     49999999 889999999999999999999432       445


Q ss_pred             CCeeEEEeccC--CCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          307 NPCNKYLFNPC--NKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       307 ~~v~~~~~s~~--g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      .+|..+.|.+.  +..+++.       -...++|||-.+|+.+.+.
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~-------Dk~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSM-------DKRILKIWDECTGKPMASI  310 (703)
T ss_pred             cceeeecccccCCCceEEec-------chHHhhhcccccCCceeec
Confidence            68899999776  3445554       2356788998888876543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=8.4e-11  Score=106.54  Aligned_cols=222  Identities=14%  Similarity=0.119  Sum_probs=137.0

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw  196 (372)
                      ..+......-..+.|+|||+++.+++.||.|.++|+.+.+.+.+.....    ...++++++||++++++. ..+.+.++
T Consensus        30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEe
Confidence            3444333334557899999999999999999999999998766643322    478899999999998776 48999999


Q ss_pred             ECCCCceeeecceeec---------------ccc--cceeccCC----------C--------CccccEEEEEEcCCCCE
Q 017421          197 DVGSGTMESLANVTEI---------------HDG--LDFSAADD----------G--------GYSFGIFSLKFSTDGRE  241 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~----------~--------~h~~~i~~~~~sp~~~~  241 (372)
                      |.++.+..........               +..  ..+...+.          .        .-........|+|++++
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence            9988776544322111               000  00110000          0        01123456789999998


Q ss_pred             EEEE-eCCCeEEEEECCCCeEEEEee------------------------------------------------------
Q 017421          242 LVAG-SSDDCIYVYDLEANKLSLRIL------------------------------------------------------  266 (372)
Q Consensus       242 l~s~-s~dg~i~iwd~~~~~~~~~~~------------------------------------------------------  266 (372)
                      ++++ .....|-++|.++++.+..+.                                                      
T Consensus       186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I  265 (369)
T PF02239_consen  186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI  265 (369)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred             eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence            8665 445678888887765543321                                                      


Q ss_pred             -cCCCCeEEEEEeCCCCCEEEEE----eCCCeEEEEecccccC-------CCCCeeEEEeccCCCeEEEEeeeeEEEeec
Q 017421          267 -AHTSDVNTVCFGDESGHLIYSG----SDDNLCKVNSVLLLTR-------SINPCNKYLFNPCNKYLIIYLILVISIYSP  334 (372)
Q Consensus       267 -~~~~~v~~~~~sp~~~~~l~s~----~~dg~i~vwd~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~  334 (372)
                       ....+ ..+..+ |+++++.+.    ...+.|.++|.++++.       ....+..+.|+++|+.+..+.      |+.
T Consensus       266 ~~~G~g-lFi~th-P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~------~~~  337 (369)
T PF02239_consen  266 PTQGGG-LFIKTH-PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSV------WDG  337 (369)
T ss_dssp             E-SSSS---EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEE------E--
T ss_pred             ECCCCc-ceeecC-CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEE------ecC
Confidence             00111 345667 888888887    3458899999987641       223488999999999988775      664


Q ss_pred             --eEEEeecccceEEEEEe
Q 017421          335 --NILLDNYFLLRTFYSFM  351 (372)
Q Consensus       335 --~i~lw~~~~~~~~~~~~  351 (372)
                        .|.++|..+.+++....
T Consensus       338 ~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  338 NGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             TTEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCcEEEEEEE
Confidence              59999999999998877

...

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.46  E-value=1.5e-13  Score=128.07  Aligned_cols=218  Identities=13%  Similarity=0.067  Sum_probs=153.5

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.++.+++|............||.+.|+.++.+.+..++++++.|..|++|.+..+..+..   +.+|.+.|++++|+|
T Consensus       208 gsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv---LrghtgavtaiafsP  284 (1113)
T KOG0644|consen  208 GSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV---LRGHTGAVTAIAFSP  284 (1113)
T ss_pred             cCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH---HhccccceeeeccCc
Confidence            44445667888766777778899999999999999999999999999999999998866554   779999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeeccee------------ecccccceeccCC----CCc--------cccEEEEEE
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVT------------EIHDGLDFSAADD----GGY--------SFGIFSLKF  235 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~----~~h--------~~~i~~~~~  235 (372)
                      -.    +.+.||++++||.+-..........            ....+..|.....    ..|        ...+.-+.+
T Consensus       285 ~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~  360 (1113)
T KOG0644|consen  285 RA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR  360 (1113)
T ss_pred             cc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec
Confidence            54    6788999999998721111110000            0001111111111    111        111222222


Q ss_pred             cCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCC
Q 017421          236 STDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINP  308 (372)
Q Consensus       236 sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~  308 (372)
                      +.+- .+.+++-.+..+++|++-+++..+.+.+|...++.+.++|-+.....+++.||+..|||+-...      .....
T Consensus       361 ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k  440 (1113)
T KOG0644|consen  361 SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK  440 (1113)
T ss_pred             cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce
Confidence            2221 2344455567789999999999999999999999999997788888899999999999985221      12345


Q ss_pred             eeEEEeccCCCeEEEE
Q 017421          309 CNKYLFNPCNKYLIIY  324 (372)
Q Consensus       309 v~~~~~s~~g~~l~~~  324 (372)
                      +...+||++|+.++..
T Consensus       441 l~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  441 LVDGKFSQDGTSIALS  456 (1113)
T ss_pred             eeccccCCCCceEecC
Confidence            6667899998887765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2.7e-13  Score=120.95  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=118.3

Q ss_pred             cccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEE
Q 017421          165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GREL  242 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l  242 (372)
                      +.+|.+-|.++.|+.+|.+|++|+.|-.+.|||.-.-+....+.               .||...|.++.|-|.  .+.+
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------TgHtaNIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------TGHTANIFSVKFVPYTNNRIV  110 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------cccccceeEEeeeccCCCeEE
Confidence            66999999999999999999999999999999987655433332               268899999999994  5788


Q ss_pred             EEEeCCCeEEEEECCCC----------eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--C------
Q 017421          243 VAGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--R------  304 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--~------  304 (372)
                      ++|..|..|++||+...          +....+..|...|..++..|...+.+.+++.||+|+-+|++...  .      
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            99999999999999852          23344556888899999984444899999999999999998421  1      


Q ss_pred             --------CCCCeeEEEeccCCC-eEEEE-eeeeEEEee
Q 017421          305 --------SINPCNKYLFNPCNK-YLIIY-LILVISIYS  333 (372)
Q Consensus       305 --------~~~~v~~~~~s~~g~-~l~~~-~~~~~~~~d  333 (372)
                              .--...++..+|... +|++| ++-+.++||
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence                    112357788999754 56665 444455555

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.5e-11  Score=105.71  Aligned_cols=232  Identities=16%  Similarity=0.160  Sum_probs=148.9

Q ss_pred             cCCCCcc---ccCCceeEeeeeeC-----CCCCccccC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 017421           93 YSGRGRF---SAADCCHMLSRYLP-----VNGPWPVDQ--TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD  162 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  162 (372)
                      |+..++|   .+.+...++|....     ...|..+.+  |...|.|++|.-..+++.+|..+++|...|+++.+.+...
T Consensus        64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~  143 (609)
T KOG4227|consen   64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA  143 (609)
T ss_pred             eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence            4666665   33445677887653     234555544  5689999999999999999999999999999998766543


Q ss_pred             eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCC-C
Q 017421          163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-R  240 (372)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~  240 (372)
                      . .....+.|..+..+|..+.|++.+.++.|.+||++.... ..... ...             .......+.|+|.. .
T Consensus       144 ~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN-------------~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  144 N-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PAN-------------SGKNFYTAEFHPETPA  208 (609)
T ss_pred             c-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecC-------------CCccceeeeecCCCce
Confidence            2 223345799999999999999999999999999986541 11111 000             11233444555533 3


Q ss_pred             EEEEEeCCCeEEEEECC-------------------------------------------------CCeEEEEeecCC--
Q 017421          241 ELVAGSSDDCIYVYDLE-------------------------------------------------ANKLSLRILAHT--  269 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~-------------------------------------------------~~~~~~~~~~~~--  269 (372)
                      +|++.+..+.+-+||++                                                 +..+......|.  
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~  288 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN  288 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence            34444444445555543                                                 322211111222  


Q ss_pred             -----CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----------------------------cccCCCCCeeEEEec
Q 017421          270 -----SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----------------------------LLTRSINPCNKYLFN  315 (372)
Q Consensus       270 -----~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----------------------------~~~~~~~~v~~~~~s  315 (372)
                           ..+.+++|.  +..-+++|+.+-.|++|.+.                             .+++|...+..+.|+
T Consensus       289 GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~  366 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS  366 (609)
T ss_pred             cceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence                 245567775  44458999999999999985                             234788889999999


Q ss_pred             cCCCeEEEEe-eeeEEEeeceEEEeec
Q 017421          316 PCNKYLIIYL-ILVISIYSPNILLDNY  341 (372)
Q Consensus       316 ~~g~~l~~~~-~~~~~~~d~~i~lw~~  341 (372)
                      |...+|+++. ...+++|..--.-|++
T Consensus       367 ~H~~~l~SSGVE~~~KlWS~~r~P~~~  393 (609)
T KOG4227|consen  367 QHNNLLVSSGVENSFKLWSDHRLPWSY  393 (609)
T ss_pred             CCcceEeccchhhheeccccccCCccc
Confidence            9987777653 3444454443333444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=4.4e-11  Score=111.02  Aligned_cols=213  Identities=15%  Similarity=0.080  Sum_probs=129.6

Q ss_pred             CCCccccCCCCceEEEEECCCCCEEE---EEeCC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421          115 NGPWPVDQTTSRAYVSQFSADGSLFV---AGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      ..+..+......+..-+|+|||+.++   +...+  ..|.+.++.+++... ..   ..........|+|||+.|+..+.
T Consensus       175 ~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt---~~~g~~~~p~wSPDG~~Laf~s~  250 (428)
T PRK01029        175 QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-IL---ALQGNQLMPTFSPRKKLLAFISD  250 (428)
T ss_pred             CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-ee---cCCCCccceEECCCCCEEEEEEC
Confidence            33455655666777889999997532   33333  368888888774322 11   22224556899999999887653


Q ss_pred             -CC--e--EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-Ce
Q 017421          190 -SP--I--VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-NK  260 (372)
Q Consensus       190 -dg--~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~--i~iwd~~~-~~  260 (372)
                       +|  .  +..|++..+.......+..             +........+|+|||+.|+..+ .+|.  |.++++.. +.
T Consensus       251 ~~g~~di~~~~~~~~~g~~g~~~~lt~-------------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        251 RYGNPDLFIQSFSLETGAIGKPRRLLN-------------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             CCCCcceeEEEeecccCCCCcceEeec-------------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence             23  2  3446666532100111111             0111345679999999887665 3564  44555542 23


Q ss_pred             EEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      ....+..+...+....|+ |||+.|+..+.+   ..|.+||+....     .....+..+.|+|||+.|+......   -
T Consensus       318 ~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~---g  393 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS---N  393 (428)
T ss_pred             ceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC---C
Confidence            344455455667789999 999988876543   468999986332     2234567899999999887653211   1


Q ss_pred             eceEEEeecccceEEE
Q 017421          333 SPNILLDNYFLLRTFY  348 (372)
Q Consensus       333 d~~i~lw~~~~~~~~~  348 (372)
                      ...|.+|++..++...
T Consensus       394 ~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        394 ESELYLISLITKKTRK  409 (428)
T ss_pred             CceEEEEECCCCCEEE
Confidence            3568888888776543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.5e-11  Score=112.99  Aligned_cols=174  Identities=20%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             cccCCCCceEEEEECCCCCEEEEE-eCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-C--e
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAG-FQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P--I  192 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~  192 (372)
                      .+....+.+..++|+|||+.|+.. +.+|  .|++||+.++....    ...+...+....|+|||+.|+..+.+ +  .
T Consensus       237 ~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~  312 (429)
T PRK03629        237 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQ  312 (429)
T ss_pred             EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence            333444556678999999988765 4444  58899998774332    22333457889999999999877764 3  4


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHT  269 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~  269 (372)
                      |+++|+.++....+..                 +........|+|||++|+..+.+   ..|.+||+.+++.. .+... 
T Consensus       313 Iy~~d~~~g~~~~lt~-----------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-  373 (429)
T PRK03629        313 VYKVNINGGAPQRITW-----------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-  373 (429)
T ss_pred             EEEEECCCCCeEEeec-----------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-
Confidence            5566777665433211                 11134568899999999876543   35889999888643 33322 


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCe---EEEEecc-----cccCCCCCeeEEEecc
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNL---CKVNSVL-----LLTRSINPCNKYLFNP  316 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~---i~vwd~~-----~~~~~~~~v~~~~~s~  316 (372)
                      .......|+ |||+.|+.++.++.   +.++++.     .+..+...+..++|+|
T Consensus       374 ~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        374 FLDETPSIA-PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCCCceEC-CCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence            234567899 99999998887764   6677764     3445667788888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.43  E-value=5.8e-11  Score=99.62  Aligned_cols=215  Identities=14%  Similarity=0.102  Sum_probs=138.6

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEE-EEeCC------CcEEEEeCCCCeEEEEeeecccCCcce
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQA------SQIRIYDVERGWKIQKDILAKSLRWTV  172 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v  172 (372)
                      .+.+.+.++++..|.......+.+.+.+.-+..--..++|+ +|+.+      ..|.|||-....++..+..    ..+|
T Consensus        22 va~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f----~~~I   97 (346)
T KOG2111|consen   22 VATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSF----NSEI   97 (346)
T ss_pred             EEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEe----ccce
Confidence            44566778888877554333333333322222222244554 34333      3699999665555554333    3379


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCC-ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCe
Q 017421          173 TDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDC  250 (372)
Q Consensus       173 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~  250 (372)
                      .++.+.++  +|++. ..+.|+||..... +...........              ..+.+++-+.+..+||.- -.-|.
T Consensus        98 ~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NP--------------kGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   98 KAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP--------------KGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             eeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCC--------------CceEeecCCCCceEEEcCCCccce
Confidence            99999865  45554 3578999998743 332222221111              135555433344455543 34589


Q ss_pred             EEEEECCCCeE--EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCe-EEEEeccccc--------CCCCCeeEEEeccCCC
Q 017421          251 IYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVNSVLLLT--------RSINPCNKYLFNPCNK  319 (372)
Q Consensus       251 i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~-i~vwd~~~~~--------~~~~~v~~~~~s~~g~  319 (372)
                      |.|-|+...+.  ...+.+|.+.|.|++.+ .+|.++||+|..|+ |||||..+..        .....|++++|||+..
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s  239 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS  239 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence            99999986654  47788999999999999 99999999999998 8999987433        3446799999999999


Q ss_pred             eEEEEeeeeEEEeeceEEEeecc
Q 017421          320 YLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       320 ~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +|+++++      .+++.++.+.
T Consensus       240 ~LavsSd------KgTlHiF~l~  256 (346)
T KOG2111|consen  240 WLAVSSD------KGTLHIFSLR  256 (346)
T ss_pred             EEEEEcC------CCeEEEEEee
Confidence            9999963      2555555443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.2e-12  Score=115.24  Aligned_cols=200  Identities=13%  Similarity=0.175  Sum_probs=150.9

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHI  195 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~v  195 (372)
                      ..+..|.+-|+.+.|+..|..|++|+.|..|.+||...+.....  ...+|...|....|-|  +.+-+++++.||++++
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceee
Confidence            45788999999999999999999999999999999988755443  4557877888888988  5567999999999998


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEee---cCCC-
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AHTS-  270 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~-  270 (372)
                      =.+.............             .|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+.   .+.. 
T Consensus       214 s~i~~t~~~e~t~rl~-------------~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  214 SEILETGYVENTKRLA-------------PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             eeeccccceecceecc-------------cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            7765433222111111             367799999999975 567899999999999998875433322   2333 


Q ss_pred             --CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------------------CCCCCeeEEEeccCC-CeEEEEeeeeE
Q 017421          271 --DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------------------RSINPCNKYLFNPCN-KYLIIYLILVI  329 (372)
Q Consensus       271 --~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------------------~~~~~v~~~~~s~~g-~~l~~~~~~~~  329 (372)
                        ..+.++..|.+...+++++.|-.+++||.+.+.                  .....|++++|+.++ .+|++..    
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn----  356 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN----  356 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec----
Confidence              567889997777899999999999999987432                  233468999999664 5666664    


Q ss_pred             EEeeceEEEe
Q 017421          330 SIYSPNILLD  339 (372)
Q Consensus       330 ~~~d~~i~lw  339 (372)
                         |-.|+|+
T Consensus       357 ---De~IYLF  363 (559)
T KOG1334|consen  357 ---DEDIYLF  363 (559)
T ss_pred             ---ccceEEe
Confidence               4555555

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=2.2e-11  Score=104.68  Aligned_cols=177  Identities=12%  Similarity=0.105  Sum_probs=134.1

Q ss_pred             CceEEEEECCCCCE-EEEEeCC--CcEEEEeCCCCeEEEEeeeccc------CCcceEEEEECCC--CCEEEEEeCCCeE
Q 017421          125 SRAYVSQFSADGSL-FVAGFQA--SQIRIYDVERGWKIQKDILAKS------LRWTVTDTSLSPD--QRHLVYASMSPIV  193 (372)
Q Consensus       125 ~~v~~~~~s~~~~~-l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~--~~~l~~~~~dg~i  193 (372)
                      ..+..|.-++.... +++|+..  ..+.|||++....+......+.      .+-.++++.|-+.  ...|++++.-+.+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            55666777775554 5568888  7899999998755443221111      1124678899987  8899999999999


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCe
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDV  272 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v  272 (372)
                      ++||.+.++........               -..+++++...|++++|++|..-|.+..||++.++.... +.+-.+.|
T Consensus       229 R~YDt~~qRRPV~~fd~---------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi  293 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDF---------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI  293 (412)
T ss_pred             EEecCcccCcceeEecc---------------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCc
Confidence            99999976532211111               123899999999999999999999999999999987766 77888999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccC
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPC  317 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~  317 (372)
                      +++..+ |...++++++-|..|||+|+.+-+     -....++.+.+.++
T Consensus       294 rsih~h-p~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  294 RSIHCH-PTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             ceEEEc-CCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999 999999999999999999998622     22345566666554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=2.9e-10  Score=102.27  Aligned_cols=112  Identities=15%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             cccEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccc
Q 017421          227 SFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLL  301 (372)
Q Consensus       227 ~~~i~~~~~sp~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~  301 (372)
                      .++|.++.|+|+++-+++.  -.-..+.|||++ +.++..+  .+++-+++-|+ |.|++|+.++.+   |.|-|||+..
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn-p~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN-PHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC-CCCCEEEEeecCCCCCceEEEeccc
Confidence            5789999999999877654  445679999988 4555555  35677889999 999999988854   7899999975


Q ss_pred             cc----CCCCCeeEEEeccCCCeEEEEeee-eEEEeeceEEEeeccc
Q 017421          302 LT----RSINPCNKYLFNPCNKYLIIYLIL-VISIYSPNILLDNYFL  343 (372)
Q Consensus       302 ~~----~~~~~v~~~~~s~~g~~l~~~~~~-~~~~~d~~i~lw~~~~  343 (372)
                      .+    ......+-+.|+|||+++++++-. .+++ |+.++||+|.-
T Consensus       346 ~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrv-dNg~KiwhytG  391 (566)
T KOG2315|consen  346 RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRV-DNGIKIWHYTG  391 (566)
T ss_pred             hhhccccccCCceEEEEcCCCcEEEEEeccccEEe-cCCeEEEEecC
Confidence            33    223445778999999999988644 7788 99999999864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1e-10  Score=109.39  Aligned_cols=172  Identities=19%  Similarity=0.178  Sum_probs=116.5

Q ss_pred             CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeEEEEECCCCceeeecceeecccccceeccC
Q 017421          146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  222 (372)
Q Consensus       146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  222 (372)
                      ..|.++|...... ..   ...+...+.+..|+|||+.|+..+.   +..|++||+.++....+..              
T Consensus       182 ~~l~~~d~dg~~~-~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~--------------  243 (435)
T PRK05137        182 KRLAIMDQDGANV-RY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN--------------  243 (435)
T ss_pred             eEEEEECCCCCCc-EE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence            3788888865422 22   3345567999999999999988764   4689999999887543322              


Q ss_pred             CCCccccEEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEE
Q 017421          223 DGGYSFGIFSLKFSTDGRELV-AGSSDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV  296 (372)
Q Consensus       223 ~~~h~~~i~~~~~sp~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~v  296 (372)
                         +...+...+|+|||+.|+ +.+.++.  |.+||+.+++. ..+..+........|+ |||+.|+..+. +|  .|.+
T Consensus       244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~  318 (435)
T PRK05137        244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV  318 (435)
T ss_pred             ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence               223566789999998875 4455554  88889987765 4455566667789999 99998887663 33  5777


Q ss_pred             Eecccc-----cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          297 NSVLLL-----TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       297 wd~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      ||+...     ......+..+.|+|+|+.|+......   -+..|.+|+...
T Consensus       319 ~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~---~~~~i~~~d~~~  367 (435)
T PRK05137        319 MNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG---GQFSIGVMKPDG  367 (435)
T ss_pred             EECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC---CceEEEEEECCC
Confidence            776532     12334566789999999998764210   012455666543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=2.3e-11  Score=116.40  Aligned_cols=209  Identities=14%  Similarity=0.060  Sum_probs=154.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ...|....+..+...++.++.+..+.+||...+....+........ ....-+.++++.-++++|+--+.|.+|+.....
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            3344445666677888888888999999998775544322111100 123345567788889999999999999987322


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEEeCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES  281 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~  281 (372)
                      . ..               ...||.+.|..+.|+-||+++++.|+|.++++|++.+.+... ...+|...|..++|. |+
T Consensus       167 ~-p~---------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n  229 (967)
T KOG0974|consen  167 K-PI---------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN  229 (967)
T ss_pred             C-cc---------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc
Confidence            1 11               012788899999999999999999999999999999988665 666899999999999 65


Q ss_pred             CCEEEEEeCCCeEEEEecc-----cccCC-CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421          282 GHLIYSGSDDNLCKVNSVL-----LLTRS-INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL  355 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~-----~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~  355 (372)
                        .+++++.|-++++|+..     ...+| ...+..++..++...++++.      .|+.+++|++..........+-.+
T Consensus       230 --~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g------~Ds~lk~~~l~~r~~e~~~~~~~~  301 (967)
T KOG0974|consen  230 --RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG------NDSTLKLWDLNGRGLEGHVEQSSL  301 (967)
T ss_pred             --eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeec------cCcchhhhhhhccccccceeeeee
Confidence              99999999999999765     22333 45688999888877776664      699999999887665555544444


Q ss_pred             Ee
Q 017421          356 FS  357 (372)
Q Consensus       356 ~~  357 (372)
                      +.
T Consensus       302 ~~  303 (967)
T KOG0974|consen  302 LS  303 (967)
T ss_pred             ec
Confidence            43

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=6.1e-11  Score=110.52  Aligned_cols=175  Identities=22%  Similarity=0.215  Sum_probs=113.3

Q ss_pred             CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccC
Q 017421          146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  222 (372)
Q Consensus       146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  222 (372)
                      ..|.++|.... ....   ...+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...+...             
T Consensus       176 ~~L~~~D~dG~-~~~~---l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-------------  238 (427)
T PRK02889        176 YQLQISDADGQ-NAQS---ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-------------  238 (427)
T ss_pred             cEEEEECCCCC-CceE---eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-------------
Confidence            36777777543 2222   22445578899999999999887653   4599999998875433221             


Q ss_pred             CCCccccEEEEEEcCCCCEEE-EEeCCCeEEEE--ECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEe
Q 017421          223 DGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVY--DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNS  298 (372)
Q Consensus       223 ~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd  298 (372)
                          ...+....|+|||+.|+ +.+.++...||  |+..+. ...+..+........|+ |||+.|+..+. ++...+|.
T Consensus       239 ----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        239 ----KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             ----CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence                12456789999999886 45667765555  555444 45555555566778999 99998876654 46667776


Q ss_pred             cccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          299 VLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       299 ~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +...       ...........|+|||++|+......   -+..|.+||+.+++.
T Consensus       313 ~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~---g~~~I~v~d~~~g~~  364 (427)
T PRK02889        313 MPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG---GAFKLYVQDLATGQV  364 (427)
T ss_pred             EECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC---CcEEEEEEECCCCCe
Confidence            5311       11222345689999999998664211   012678888877654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=9.1e-11  Score=106.07  Aligned_cols=188  Identities=16%  Similarity=0.092  Sum_probs=145.2

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE--------------------CCCCCEEEEEeCCCeE
Q 017421          134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--------------------SPDQRHLVYASMSPIV  193 (372)
Q Consensus       134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--------------------~~~~~~l~~~~~dg~i  193 (372)
                      |-..++|....||.++||+...++.-..+.....-.+..++..|                    +-|...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45678999999999999999988554443333333334444444                    1234568888899999


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN  273 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  273 (372)
                      .+|+...++.......              ++|.+.|+++.++.+-..|.+++.|+.+..|+....+.+..+......+.
T Consensus        83 ~~ys~~~g~it~~~st--------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLST--------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             EEEEecCCeEEEEEec--------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            9999998886433321              15778999999999888999999999999999999999999998888999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccC-----CCeEEEEeeeeEEEeeceEEEeecc
Q 017421          274 TVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPC-----NKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~-----g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +++.+ |||..+++++  +.|++||+.      ++.+|.++|.++.|..+     |.++.++..     .+.-+.+|-..
T Consensus       149 sl~is-~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~  220 (541)
T KOG4547|consen  149 SLCIS-PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVE  220 (541)
T ss_pred             eEEEc-CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEE
Confidence            99999 9999999885  679999997      45699999999999887     777776632     24445566544


Q ss_pred             c
Q 017421          343 L  343 (372)
Q Consensus       343 ~  343 (372)
                      .
T Consensus       221 ~  221 (541)
T KOG4547|consen  221 K  221 (541)
T ss_pred             c
Confidence            3

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.37  E-value=5e-11  Score=98.94  Aligned_cols=187  Identities=16%  Similarity=0.136  Sum_probs=132.2

Q ss_pred             CCceEEEEECC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc---ceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          124 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       124 ~~~v~~~~~s~---~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+..+.|..   +|. .++-+...|.|.+|..........+.......-   ...++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            44566666643   444 456667789999998765433332222222111   24578899999999999999999866


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeEEEE-eecCCCCeE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE-ANKLSLR-ILAHTSDVN  273 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~-~~~~~~~-~~~~~~~v~  273 (372)
                      +........... .+             .|..++....|+.. .+++.+|++|+.+.-||++ .++.+.. .+.|...|.
T Consensus       149 ~~t~~~le~vq~-wk-------------~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~  214 (339)
T KOG0280|consen  149 YETEMVLEKVQT-WK-------------VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV  214 (339)
T ss_pred             ecceeeeeeccc-cc-------------ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence            655444332222 11             46778888888764 3688999999999999999 3444444 456889999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCC--eEEEE
Q 017421          274 TVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNK--YLIIY  324 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~--~l~~~  324 (372)
                      ++.-+||.+.+|++|+.|..|++||.|...      ...+.|+.+.++|.-.  .|+++
T Consensus       215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C  273 (339)
T KOG0280|consen  215 SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC  273 (339)
T ss_pred             EEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH
Confidence            999999999999999999999999999432      4557899999999743  44444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.3e-10  Score=106.96  Aligned_cols=174  Identities=16%  Similarity=0.159  Sum_probs=113.6

Q ss_pred             cccCCCCceEEEEECCCCCEEEE-EeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC--e
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVA-GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP--I  192 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~  192 (372)
                      .+..+.+...+++|+|||+.|+. .+.+|  .|++||+.++... .   ...+.......+|+||++.|+..+. +|  .
T Consensus       242 ~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~---lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~  317 (433)
T PRK04922        242 LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-R---LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQ  317 (433)
T ss_pred             EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-E---CccCCCCccceEECCCCCEEEEEECCCCCce
Confidence            44445556668899999998764 45555  5999999887432 2   2233334567899999999887764 44  4


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEEeecCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHT  269 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~  269 (372)
                      |+++|+.+++...+..  .               ......++|+|||++|+..+.++   .|.+||+.+++.. .+. +.
T Consensus       318 iy~~dl~~g~~~~lt~--~---------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~  378 (433)
T PRK04922        318 IYRVAASGGSAERLTF--Q---------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PG  378 (433)
T ss_pred             EEEEECCCCCeEEeec--C---------------CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CC
Confidence            7777777765433321  0               01344689999999998765433   5999999887654 343 33


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccc-----ccCCCCCeeEEEecc
Q 017421          270 SDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLL-----LTRSINPCNKYLFNP  316 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~-----~~~~~~~v~~~~~s~  316 (372)
                      .....+.|+ |||++|+..+.+   +.|.++++..     +..+...+..++|+|
T Consensus       379 ~~~~~p~~s-pdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        379 SLDESPSFA-PNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCCceEC-CCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence            345567999 999988776643   3577777642     222334556667765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=6.2e-09  Score=94.31  Aligned_cols=203  Identities=14%  Similarity=0.198  Sum_probs=133.9

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeee-c----------ccCCcceEEEEECCCCCEEEEEeC-C
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDIL-A----------KSLRWTVTDTSLSPDQRHLVYASM-S  190 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-~----------~~~~~~v~~~~~~~~~~~l~~~~~-d  190 (372)
                      ......++++|++++|+++.+ +|.|.++++.....+..... .          ......+.++.|+|+++++++... .
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            455677999999999988864 89999999987433322211 1          011234789999999999887654 4


Q ss_pred             CeEEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECC--CCe--EEE
Q 017421          191 PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLE--ANK--LSL  263 (372)
Q Consensus       191 g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~--~~~--~~~  263 (372)
                      ..|.+|++....  ....... ...            .....+.+.|+|+++++++.. .++.|.++++.  ++.  .+.
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~-~~~------------~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSI-KVP------------PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEE-ECS------------TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEEEeCCCceEEEeecc-ccc------------cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence            579999997765  2221111 111            224688999999999886655 46789999988  443  223


Q ss_pred             EeecC------CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccc----c------cCCCCCeeEEEeccCCCeEEEEee
Q 017421          264 RILAH------TSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLL----L------TRSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       264 ~~~~~------~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~----~------~~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      .+...      ......++++ |+|++|+++. ..+.|.+|++..    +      .........++++|+|++|+++..
T Consensus       233 ~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EeeeccccccccCCceeEEEe-cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            33211      1257889999 9999888766 567899999841    1      123445799999999999998842


Q ss_pred             eeEEEeeceEEEeec--ccce
Q 017421          327 LVISIYSPNILLDNY--FLLR  345 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~--~~~~  345 (372)
                           .+++|.+|++  .+|.
T Consensus       312 -----~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  312 -----DSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             -----TTTEEEEEEEETTTTE
T ss_pred             -----CCCeEEEEEEeCCCCc
Confidence                 3567777766  4555

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.32  E-value=1.7e-09  Score=98.04  Aligned_cols=187  Identities=16%  Similarity=0.102  Sum_probs=122.6

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421          137 SLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       137 ~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      +++ ++-..++.|.|.|..+.+.+......   ......+.|+||++++++++.||.|.++|+.+.+........     
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-----   77 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-----   77 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-----
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-----
Confidence            444 45556899999999988666653322   223345789999999999999999999999999875544422     


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEeecC-------CCCeEEEEEeCCCCC-EEE
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGH-LIY  286 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~-~l~  286 (372)
                                  .....+++++||++++++. ..+.+.++|.++.+.+..+...       ...+.++..+ +... +++
T Consensus        78 ------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv  144 (369)
T PF02239_consen   78 ------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS-PGRPEFVV  144 (369)
T ss_dssp             ------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE--SSSSEEEE
T ss_pred             ------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec-CCCCEEEE
Confidence                        2567899999999998765 5799999999999988887632       3456788888 5566 444


Q ss_pred             EEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          287 SGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       287 s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      +.-..+.|.+.|.....       ..........|+|++++++++..     .++.+-++|..+++.+..
T Consensus       145 ~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  145 NLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             EETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEETTTTEEEEE
T ss_pred             EEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-----ccceeEEEeeccceEEEE
Confidence            44445888887865321       23345678899999999877631     245666777776665543

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.31  E-value=1.1e-10  Score=109.11  Aligned_cols=180  Identities=14%  Similarity=0.083  Sum_probs=115.9

Q ss_pred             CcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCC
Q 017421          146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG  224 (372)
Q Consensus       146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (372)
                      +.+.||++........   ....+..|+++.|+| +..+++.|+.+|+|.+||++.+.......+..          ...
T Consensus       222 ~~~~vW~~~~p~~Pe~---~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~----------~~~  288 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPEL---VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA----------LEV  288 (555)
T ss_pred             ceEEEEecCCCCCceE---EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc----------ccc
Confidence            4789999987622222   223445799999999 67788889999999999998876522111110          112


Q ss_pred             CccccEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeE-----------------------------------------
Q 017421          225 GYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKL-----------------------------------------  261 (372)
Q Consensus       225 ~h~~~i~~~~~sp~~--~~l~s~s~dg~i~iwd~~~~~~-----------------------------------------  261 (372)
                      .|..++..+.|..+-  .-|++++.||.|..|+++.-..                                         
T Consensus       289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe  368 (555)
T KOG1587|consen  289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE  368 (555)
T ss_pred             cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence            577888899886643  3488888899999997653110                                         


Q ss_pred             ----------------------EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEE
Q 017421          262 ----------------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKY  312 (372)
Q Consensus       262 ----------------------~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~  312 (372)
                                            ...+..|.++|+++.++|-...+|.+++ |.+++||....       ...+...|+++
T Consensus       369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~v  447 (555)
T KOG1587|consen  369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDV  447 (555)
T ss_pred             CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeee
Confidence                                  0001134567777777733333444443 78888887651       22455568888


Q ss_pred             EeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +|||..--+++..+     -||++.+||+...
T Consensus       448 aWSptrpavF~~~d-----~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  448 AWSPTRPAVFATVD-----GDGNLDIWDLLQD  474 (555)
T ss_pred             EEcCcCceEEEEEc-----CCCceehhhhhcc
Confidence            88887655554432     2788888886543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.31  E-value=4.9e-10  Score=94.59  Aligned_cols=226  Identities=13%  Similarity=0.098  Sum_probs=137.2

Q ss_pred             eEeeeeeCCCCCccccCCCCceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE
Q 017421          106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL  184 (372)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  184 (372)
                      +.+|.+...+-...++.-..++.+++|||||+.|+ +...+-.|.||.+.+.....    .+..+..+..++|+|||++.
T Consensus        73 vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~  148 (447)
T KOG4497|consen   73 VQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFC  148 (447)
T ss_pred             EEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCcee
Confidence            34555555555556677788899999999997655 56678899999998874433    22223357889999999988


Q ss_pred             EEEeCCCeEEEEECCCCc---eeeecce-eecccccceeccCC--------------CCc-cccEEEEEEcCCCCEEEEE
Q 017421          185 VYASMSPIVHIVDVGSGT---MESLANV-TEIHDGLDFSAADD--------------GGY-SFGIFSLKFSTDGRELVAG  245 (372)
Q Consensus       185 ~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~--------------~~h-~~~i~~~~~sp~~~~l~s~  245 (372)
                      +..+.......+++..-+   ....... .....++..+|+..              --| .-.+..++|+|.+++|+.|
T Consensus       149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavG  228 (447)
T KOG4497|consen  149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVG  228 (447)
T ss_pred             eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEee
Confidence            877653111011100000   0000000 00001111222110              001 1368889999999999999


Q ss_pred             eCCCeEEEEECCCCeEEEE------------------------------------------------------------e
Q 017421          246 SSDDCIYVYDLEANKLSLR------------------------------------------------------------I  265 (372)
Q Consensus       246 s~dg~i~iwd~~~~~~~~~------------------------------------------------------------~  265 (372)
                      +.|+.+++.+--+.+....                                                            +
T Consensus       229 syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l  308 (447)
T KOG4497|consen  229 SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL  308 (447)
T ss_pred             ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc
Confidence            9999988865333221110                                                            0


Q ss_pred             e------cCCCCeEEEEEeCCCCCEEEEEeC--CCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          266 L------AHTSDVNTVCFGDESGHLIYSGSD--DNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       266 ~------~~~~~v~~~~~sp~~~~~l~s~~~--dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      +      .....+.-++|+ +|..++++-..  -+.+-+||++.++     ....+|....|+|.-..|+.+++      
T Consensus       309 kp~tD~pnPk~g~g~lafs-~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg------  381 (447)
T KOG4497|consen  309 KPPTDFPNPKCGAGKLAFS-CDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG------  381 (447)
T ss_pred             cCCCCCCCcccccceeeec-CCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcC------
Confidence            0      012245568999 99999988753  3679999998665     34578999999999888887743      


Q ss_pred             eceEEEeecc
Q 017421          333 SPNILLDNYF  342 (372)
Q Consensus       333 d~~i~lw~~~  342 (372)
                      ...+++|...
T Consensus       382 ~srLY~W~ps  391 (447)
T KOG4497|consen  382 KSRLYFWAPS  391 (447)
T ss_pred             CceEEEEcCC
Confidence            2335566543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=5.1e-11  Score=114.05  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=124.2

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeccee
Q 017421          131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT  210 (372)
Q Consensus       131 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  210 (372)
                      -++++.-++++|+--+.|.+|+....+...   ...+|.+.|.++.|+.||+++++.+.|..+++|++++.+.....-  
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~--  214 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG--  214 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc--
Confidence            467778889999999999999987432222   467999999999999999999999999999999999987644111  


Q ss_pred             ecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEEeCCCCCEEEEEe
Q 017421          211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       211 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~s~~  289 (372)
                                   =||+..|..+.|+|+  .+++++.|.+.++|+.. +..+..+.+|.. .+..++.. ++...++|++
T Consensus       215 -------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~-~~~~~~vT~g  277 (967)
T KOG0974|consen  215 -------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVP-IGVIIKVTGG  277 (967)
T ss_pred             -------------ccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEc-CCceEEEeec
Confidence                         179999999999998  89999999999999776 444457777754 78899997 8888999999


Q ss_pred             CCCeEEEEecc
Q 017421          290 DDNLCKVNSVL  300 (372)
Q Consensus       290 ~dg~i~vwd~~  300 (372)
                      .|+.+++||+.
T Consensus       278 ~Ds~lk~~~l~  288 (967)
T KOG0974|consen  278 NDSTLKLWDLN  288 (967)
T ss_pred             cCcchhhhhhh
Confidence            99999999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.30  E-value=1.8e-11  Score=102.36  Aligned_cols=238  Identities=13%  Similarity=0.205  Sum_probs=162.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEe-eecccC------------CcceEEEEECCCC--CEEEEE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKD-ILAKSL------------RWTVTDTSLSPDQ--RHLVYA  187 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~-~~~~~~------------~~~v~~~~~~~~~--~~l~~~  187 (372)
                      ...|+++.|...|.+|++|...|.|.+|.-+... +..+. .....|            ...|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5679999999999999999999999999866542 11111 011222            2357888887754  457778


Q ss_pred             eCCCeEEEEECCCCceeeecc--eee----cccc-------------------cceecc--CCCCccccEEEEEEcCCCC
Q 017421          188 SMSPIVHIVDVGSGTMESLAN--VTE----IHDG-------------------LDFSAA--DDGGYSFGIFSLKFSTDGR  240 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~--~~~----~~~~-------------------~~~~~~--~~~~h~~~i~~~~~sp~~~  240 (372)
                      +.|.+|++|.+.......+..  +..    +..|                   ++..|.  -...|...|+++.|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            899999999986542211110  000    0000                   000000  0135788899999999988


Q ss_pred             EEEEEeCCCeEEEEECCCCe---EEEEeecCC-----CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----------
Q 017421          241 ELVAGSSDDCIYVYDLEANK---LSLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----------  301 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----------  301 (372)
                      .++++. |-.|.+|++.-..   .+..++.|.     .-|++..|+|...+.+...+..|.|++-|+|.           
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            877764 7889999987433   223334443     35788999988888999999999999999981           


Q ss_pred             ---c--------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce-EEEEEeeeEEEeeecccCCccccc
Q 017421          302 ---L--------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVHILFSGYLHNDHNHRCA  369 (372)
Q Consensus       302 ---~--------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~  369 (372)
                         +        .+....|..+.|+++|+++++-.       =.++++||+...+ +++....|.....-|+..++++|.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence               0        12345788999999999998763       2567888887665 677777887777777777777764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.27  E-value=2.9e-10  Score=94.47  Aligned_cols=198  Identities=15%  Similarity=0.062  Sum_probs=136.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceee
Q 017421          127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      ..++.|++.+..++++..+|.+.+-+.... .+.+....+.|..+.+...|+. +.+.+.+|+.|+.+..||++..+ ..
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~  201 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF  201 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence            567889999999999999999986654443 4444445778888999999987 55688999999999999999443 11


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      +.....             -|...|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|..+.++|....
T Consensus       202 i~~n~k-------------vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~  267 (339)
T KOG0280|consen  202 IWHNSK-------------VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFH  267 (339)
T ss_pred             eeecce-------------eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhh
Confidence            222111             3677899998876 478999999999999999984 55554433 4478999999954443


Q ss_pred             EEEEEeCCCeEEEEecc-----------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE-Eeecccce
Q 017421          284 LIYSGSDDNLCKVNSVL-----------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL-LDNYFLLR  345 (372)
Q Consensus       284 ~l~s~~~dg~i~vwd~~-----------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~-lw~~~~~~  345 (372)
                      .++.++.-.-.+|-+..           ..+.|.+-++.-.|.....+++++     +.||..++ +|-..++.
T Consensus       268 ~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC-----sFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  268 RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC-----SFYDKKIRQLWLHITGE  336 (339)
T ss_pred             HHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeee-----eccccceeeeeeeccCC
Confidence            33322222223333322           334566666777775554567775     56998866 88666554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=2.4e-10  Score=102.96  Aligned_cols=177  Identities=16%  Similarity=0.198  Sum_probs=134.7

Q ss_pred             eeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec---ccCCc-----ceEEEEECCC
Q 017421          109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRW-----TVTDTSLSPD  180 (372)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~-----~v~~~~~~~~  180 (372)
                      .++..+.....+....+.++++..++...+|++|+.+|.|..||......+..+...   ..|.+     .|+++.|+.+
T Consensus       160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~  239 (703)
T KOG2321|consen  160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD  239 (703)
T ss_pred             EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC
Confidence            344445555556666789999999999999999999999999999876444332211   12222     4999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 017421          181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~  258 (372)
                      |-.+++|+.+|.+.+||+++.+.......               +...+|..+.|.+.  ++.+++. ....++|||-.+
T Consensus       240 gL~~aVGts~G~v~iyDLRa~~pl~~kdh---------------~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~  303 (703)
T KOG2321|consen  240 GLHVAVGTSTGSVLIYDLRASKPLLVKDH---------------GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT  303 (703)
T ss_pred             ceeEEeeccCCcEEEEEcccCCceeeccc---------------CCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence            99999999999999999999887544432               34568999999875  3445544 357799999999


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT  303 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~  303 (372)
                      |+....+. ....+..+++- |++-+++++..++.+..|=+..+.
T Consensus       304 Gk~~asiE-pt~~lND~C~~-p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  304 GKPMASIE-PTSDLNDFCFV-PGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             CCceeecc-ccCCcCceeee-cCCceEEEecCCCcceeEEccccC
Confidence            99877776 45669999999 888899999888888777665443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.25  E-value=3.4e-09  Score=93.74  Aligned_cols=196  Identities=16%  Similarity=0.152  Sum_probs=144.1

Q ss_pred             ECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-eEEEEECCCCceeeecce
Q 017421          132 FSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANV  209 (372)
Q Consensus       132 ~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~  209 (372)
                      |++ +|++++..+. |+..|.+...+..++.     ++...|.-..+.-++.-++.|..|| .+-|+|.++++...... 
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-  399 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-  399 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-
Confidence            555 6888888887 7888888877644442     5555688888888888999999999 89999999988654433 


Q ss_pred             eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421          210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                                      .-+.|..+..+|+|++++.+.....+.+.|+.+++....-+...+-|+.+.|+ |++++||.+-
T Consensus       400 ----------------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYaf  462 (668)
T COG4946         400 ----------------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAF  462 (668)
T ss_pred             ----------------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEec
Confidence                            22479999999999999999988999999999998755555566789999999 9999999886


Q ss_pred             CCC----eEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          290 DDN----LCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       290 ~dg----~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      -+|    .|+++|+...+     .....-.+.+|.|+|++|.--+...+.- ...-.++++.-.+..+.|.+
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdP-s~Drv~fnf~f~~vskPylv  533 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDP-SNDRVIFNFSFQRVSKPYLV  533 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCC-CCCeeEEEEEEeeeccceEE
Confidence            665    58999987432     3334446789999999987654322211 11223445554555555544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.25  E-value=1.5e-09  Score=101.29  Aligned_cols=172  Identities=21%  Similarity=0.161  Sum_probs=112.5

Q ss_pred             cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccCC
Q 017421          147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  223 (372)
Q Consensus       147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (372)
                      .|.++|..... ...   ...+...+....|+||+++|+.+...   ..|++||+.++.......               
T Consensus       171 ~l~~~d~~g~~-~~~---l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---------------  231 (417)
T TIGR02800       171 ELQVADYDGAN-PQT---ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---------------  231 (417)
T ss_pred             eEEEEcCCCCC-CEE---eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---------------
Confidence            58888876442 222   22344468889999999999987654   479999999876533222               


Q ss_pred             CCccccEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEEE
Q 017421          224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVN  297 (372)
Q Consensus       224 ~~h~~~i~~~~~sp~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~vw  297 (372)
                        +...+..++|+|||+.|+. .+.++  .|++||+.++.. ..+..+........|+ ++|+.|+..+. ++  .|.++
T Consensus       232 --~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~  307 (417)
T TIGR02800       232 --FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMM  307 (417)
T ss_pred             --CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEE
Confidence              1124566899999987764 44443  589999987754 3444455555678999 89988876654 33  57777


Q ss_pred             ecccc-----cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          298 SVLLL-----TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       298 d~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      |+...     ..+...+..+.|+|+|++++.+....   -...|.+||..++
T Consensus       308 d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~---~~~~i~~~d~~~~  356 (417)
T TIGR02800       308 DADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG---GGFNIAVMDLDGG  356 (417)
T ss_pred             ECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccC---CceEEEEEeCCCC
Confidence            76532     23445567889999999988774221   0124566666554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=4.1e-08  Score=89.01  Aligned_cols=209  Identities=18%  Similarity=0.181  Sum_probs=133.5

Q ss_pred             CCceEEEEECCCCCEEEEEeC----CCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD  197 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd  197 (372)
                      ......++++|++++|.+...    ++.|..|.+... ..+...............++++|++++|+++.. +|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            445667889999999988766    578999998764 233222222212335678999999999999875 89999999


Q ss_pred             CCCC-ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe--E--EEEee-cCCC
Q 017421          198 VGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK--L--SLRIL-AHTS  270 (372)
Q Consensus       198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~--~--~~~~~-~~~~  270 (372)
                      +... ........ ..+.+.  .+.....-.....++.|+|+++++++... ...|.+|++....  .  ...+. ....
T Consensus       116 l~~~g~l~~~~~~-~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  116 LDDDGSLGEVVQT-VRHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             ECTTSEEEEEEEE-EESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             ccCCcccceeeee-cccCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            9874 33222111 111111  11111122346788999999998887654 3579999997654  2  12222 3455


Q ss_pred             CeEEEEEeCCCCCEEEEEe-CCCeEEEEecc--c-----------cc---CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          271 DVNTVCFGDESGHLIYSGS-DDNLCKVNSVL--L-----------LT---RSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~--~-----------~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      ....+.|+ |+++++++.. .++.|.++++.  .           +.   ........++++|||++|+++..+     +
T Consensus       193 GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~  266 (345)
T PF10282_consen  193 GPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----S  266 (345)
T ss_dssp             SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----T
T ss_pred             CCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----C
Confidence            78899999 8998887665 57889999886  1           10   112257889999999999988422     5


Q ss_pred             ceEEEeec
Q 017421          334 PNILLDNY  341 (372)
Q Consensus       334 ~~i~lw~~  341 (372)
                      ..|.++++
T Consensus       267 ~sI~vf~~  274 (345)
T PF10282_consen  267 NSISVFDL  274 (345)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            56666666

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=5.5e-08  Score=83.69  Aligned_cols=217  Identities=17%  Similarity=0.148  Sum_probs=142.7

Q ss_pred             CceeEeeeeeCCCC---CccccCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCC--CeEEEEeeecccCCcceEE
Q 017421          103 DCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVER--GWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       103 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~  174 (372)
                      .+.+.+|.+.....   ...+-...+.++-++|+|+++.|.++-.   +|.|-.|.++.  |.. ...........+.+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeE
Confidence            45566777763332   2233456788899999999998887744   47788887765  432 221112222234588


Q ss_pred             EEECCCCCEEEEEeC-CCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-CeE
Q 017421          175 TSLSPDQRHLVYASM-SPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCI  251 (372)
Q Consensus       175 ~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g~i  251 (372)
                      +++++++++++++.. .|.|.++-++. |......... .+.+  ..++. ..-..-+....|.|++++|++.+.. -.|
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g--~~p~~-rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri  169 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTG--SGPHE-RQESPHVHSANFTPDGRYLVVPDLGTDRI  169 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCC--CCCCc-cccCCccceeeeCCCCCEEEEeecCCceE
Confidence            999999999999876 68899999976 4332222211 1111  00110 0011127788999999999887653 359


Q ss_pred             EEEECCCCeEEEEee---cCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecccc-------c---------CCCCCeeE
Q 017421          252 YVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLL-------T---------RSINPCNK  311 (372)
Q Consensus       252 ~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~-------~---------~~~~~v~~  311 (372)
                      .+|++..+.....-.   ........|.|+ |++++....+ -+++|-+|.....       +         ....+...
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa  248 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA  248 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence            999999776432211   344567899999 9999887765 5899999997631       1         23456788


Q ss_pred             EEeccCCCeEEEEe
Q 017421          312 YLFNPCNKYLIIYL  325 (372)
Q Consensus       312 ~~~s~~g~~l~~~~  325 (372)
                      +..+|||++|.++.
T Consensus       249 Ihis~dGrFLYasN  262 (346)
T COG2706         249 IHISPDGRFLYASN  262 (346)
T ss_pred             EEECCCCCEEEEec
Confidence            99999999999983

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=3.4e-08  Score=84.89  Aligned_cols=197  Identities=16%  Similarity=0.188  Sum_probs=134.6

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcc----------eEEEEECCCCCEEEEEeC-CCeE
Q 017421          126 RAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWT----------VTDTSLSPDQRHLVYASM-SPIV  193 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i  193 (372)
                      +...++++++|++++++.+ .|.|.++.++....+........|.+.          +....+.|++++|++... --.|
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri  169 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI  169 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence            3378999999999988765 578999999764333333223333333          888999999999988755 3469


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCC--e--EEEEee--
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEAN--K--LSLRIL--  266 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~--~--~~~~~~--  266 (372)
                      .+|++..|+......... .            .....+.|.|+|++++..... .+++|.+|.....  +  .++.+.  
T Consensus       170 ~~y~~~dg~L~~~~~~~v-~------------~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         170 FLYDLDDGKLTPADPAEV-K------------PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             EEEEcccCcccccccccc-C------------CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            999999777543332211 1            123678999999999886555 4899999998763  2  222222  


Q ss_pred             ----cCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEecccc----------cCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          267 ----AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSVLLL----------TRSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       267 ----~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~~~----------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                          .......++..+ ++|++|+++.. ...|-+|.+...          ..+......+.|+|+|++|+++..+    
T Consensus       237 P~dF~g~~~~aaIhis-~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~----  311 (346)
T COG2706         237 PEDFTGTNWAAAIHIS-PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK----  311 (346)
T ss_pred             ccccCCCCceeEEEEC-CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC----
Confidence                123456788999 99999998753 346777776521          1344456889999999999998532    


Q ss_pred             eeceEEEeec
Q 017421          332 YSPNILLDNY  341 (372)
Q Consensus       332 ~d~~i~lw~~  341 (372)
                       +.+|.++..
T Consensus       312 -sd~i~vf~~  320 (346)
T COG2706         312 -SDNITVFER  320 (346)
T ss_pred             -CCcEEEEEE
Confidence             344556543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.20  E-value=2.4e-09  Score=91.03  Aligned_cols=200  Identities=14%  Similarity=0.135  Sum_probs=141.9

Q ss_pred             ccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~  176 (372)
                      .+.|+..++|.-....+.+.  ....+.+++++.++++...|++|-..|++.-+.+... +..........|..++..+-
T Consensus        42 ~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~i  121 (404)
T KOG1409|consen   42 VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIV  121 (404)
T ss_pred             ccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEE
Confidence            34455666766655544333  3456888999999999999999999999998877543 12222223557888999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc------cceeccC-------------------CCCccccEE
Q 017421          177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG------LDFSAAD-------------------DGGYSFGIF  231 (372)
Q Consensus       177 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~-------------------~~~h~~~i~  231 (372)
                      |+....++++.+.|..+.---.+.+....-.........      ..|.+..                   ..+|.+.+.
T Consensus       122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~  201 (404)
T KOG1409|consen  122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT  201 (404)
T ss_pred             ecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence            999888999998887764333333322211111111111      1111110                   147899999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          232 SLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       232 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +++|.|....|.+|..|..+.+||+.-++ ....+.+|...|..+..- +.-+.+++++.||.|.+|+++
T Consensus       202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEecc
Confidence            99999999999999999999999997543 345677899999999988 778899999999999999975

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=2e-08  Score=92.86  Aligned_cols=174  Identities=13%  Similarity=0.097  Sum_probs=113.1

Q ss_pred             ceEEEEECCCCCE-EEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeEEEEEC
Q 017421          126 RAYVSQFSADGSL-FVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDV  198 (372)
Q Consensus       126 ~v~~~~~s~~~~~-l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~  198 (372)
                      .+....|+|||+. ++..+.+   ..|.++|+.+++...- .   ...+......|+|||+.++....   +..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-A---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-e---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            6778999999985 5544433   4689999988744332 1   22334567789999988775433   357888898


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      .++....+....                 .......|+|||+.|+..+.. +  .|.+.|+.+++..+... ....  ..
T Consensus       265 ~~g~~~~LT~~~-----------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~  324 (419)
T PRK04043        265 NTKTLTQITNYP-----------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NS  324 (419)
T ss_pred             CCCcEEEcccCC-----------------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--Cc
Confidence            887654443211                 112345799999988766643 2  58888998876533322 1111  24


Q ss_pred             EEeCCCCCEEEEEeCC---------CeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421          276 CFGDESGHLIYSGSDD---------NLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~d---------g~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .|+ |+|+.|+..+..         ..|.+.|+....     .. .......|+|||+.|+..+
T Consensus       325 ~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        325 SVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             eEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEE
Confidence            899 999988776643         257777765321     21 2334689999999888764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.19  E-value=4.2e-10  Score=97.40  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=109.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe---EEEEECCCCc
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIVDVGSGT  202 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~  202 (372)
                      .+..+..++.+++||++..+....++++.......+...........+++.|..+......+...|.   +.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            3445567888999999888888777777654321111111122223455666555555555544444   4455444343


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEeCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDES  281 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~  281 (372)
                      .....                 ||-+-++.++|+||+++|+++..|..|++-.......+..+. +|..-|..++.-  +
T Consensus       144 ~~~~l-----------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~  204 (390)
T KOG3914|consen  144 CEPIL-----------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--D  204 (390)
T ss_pred             cchhh-----------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--c
Confidence            32222                 688899999999999999999999999998877655555554 799999999996  5


Q ss_pred             CCEEEEEeCCCeEEEEecccc
Q 017421          282 GHLIYSGSDDNLCKVNSVLLL  302 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~~  302 (372)
                      +..|+++|.|++|++||+++.
T Consensus       205 ~~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  205 NYLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             CceeeecCCCCcEEEEecccC
Confidence            667999999999999999743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=3.8e-09  Score=98.19  Aligned_cols=180  Identities=15%  Similarity=0.110  Sum_probs=108.1

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeC-CC----cEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCCEEEEEe-
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQ-AS----QIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-  188 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  188 (372)
                      ...+....+.....+|||||+.|+..+. +|    .+.+|++..+.  .....  ............|+|||+.|+..+ 
T Consensus       223 ~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~Laf~s~  300 (428)
T PRK01029        223 GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTRLVFVSN  300 (428)
T ss_pred             ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCEEEEEEC
Confidence            3444555666677899999998886553 22    33446665421  11221  112222346789999999888766 


Q ss_pred             CCCeEEEE--ECCC--CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeE
Q 017421          189 MSPIVHIV--DVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKL  261 (372)
Q Consensus       189 ~dg~i~vw--d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~  261 (372)
                      .+|...+|  ++..  +....+..                 +...+....|+|||+.|+..+.+   ..|.+||+.+++.
T Consensus       301 ~~g~~~ly~~~~~~~g~~~~~lt~-----------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        301 KDGRPRIYIMQIDPEGQSPRLLTK-----------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             CCCCceEEEEECcccccceEEecc-----------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            35644444  4432  11111110                 11245678999999998866543   4699999998876


Q ss_pred             EEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEeccccc-----CCCCCeeEEEeccC
Q 017421          262 SLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSVLLLT-----RSINPCNKYLFNPC  317 (372)
Q Consensus       262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~~~~~-----~~~~~v~~~~~s~~  317 (372)
                      . .+......+....|+ |||+.|+....   ...|.++|+....     .....+...+|+|-
T Consensus       364 ~-~Lt~~~~~~~~p~wS-pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        364 Y-QLTTSPENKESPSWA-IDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             E-EccCCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence            4 333334466789999 89988775433   3457788875321     23334556677764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=7.8e-09  Score=96.82  Aligned_cols=173  Identities=20%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccCC
Q 017421          147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  223 (372)
Q Consensus       147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (372)
                      .|.++|...+.. ..   ...+...+....|+|||+.|+..+.+   ..|.+||+.++....+....             
T Consensus       180 ~l~~~d~~g~~~-~~---l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-------------  242 (430)
T PRK00178        180 TLQRSDYDGARA-VT---LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-------------  242 (430)
T ss_pred             EEEEECCCCCCc-eE---EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence            477788775432 22   22344568899999999999877643   46999999988754433211             


Q ss_pred             CCccccEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEEE
Q 017421          224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVN  297 (372)
Q Consensus       224 ~~h~~~i~~~~~sp~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~vw  297 (372)
                          ..+....|+|||+.|+. .+.++  .|++||+.+++. ..+..+........|+ |+|+.|+..+. ++  .|.++
T Consensus       243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence                13446899999998874 44444  688899998765 3455555566778999 88887766553 34  46666


Q ss_pred             eccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          298 SVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       298 d~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |+....     ..........|+|+|+.|+...... .  ...|.+||+.+++
T Consensus       317 d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~--~~~l~~~dl~tg~  366 (430)
T PRK00178        317 NVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD-G--NFHVAAQDLQRGS  366 (430)
T ss_pred             ECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC-C--ceEEEEEECCCCC
Confidence            764321     1122334678999999988764211 0  1246677776654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=3.7e-10  Score=113.65  Aligned_cols=212  Identities=10%  Similarity=0.114  Sum_probs=154.4

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+..+-..|.++.=+|...+.++|+.||.+++|....+..+........  ..|+.+.|+.+|+.+..+..||.+.+|.
T Consensus      2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecc
Confidence            34555667888888899999999999999999999988877766444333  6899999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe---CCCeEEEEECCCC---eEEEEeecCCCC
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEAN---KLSLRILAHTSD  271 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s---~dg~i~iwd~~~~---~~~~~~~~~~~~  271 (372)
                      +..... ..   ..             -|........|-.  ..+++++   .++.+.+||....   ..+.  ..|.+.
T Consensus      2280 ~~pk~~-~s---~q-------------chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2280 ASPKPY-TS---WQ-------------CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred             cCCcce-ec---cc-------------cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence            872211 11   11             2555677777764  4566543   4678999997532   2333  679999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      ++++++- |..++|++|+.+|.|++||++.-+ .|.-+.    +. ...+++.+.      -.|++++|++..-..+++|
T Consensus      2339 aT~l~~~-P~~qllisggr~G~v~l~D~rqrql~h~~~~----~~-~~~~f~~~s------s~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2339 ATVLAYA-PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----LD-TREYFVTGS------SEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             ceEEEEc-CcceEEEecCCcCcEEEeehHHHHHHHHhhh----hh-hhheeeccC------cccceEEEEccccchhhcC
Confidence            9999999 999999999999999999998322 222222    44 445666664      4789999999888777776


Q ss_pred             eeeEEEeeecccCC
Q 017421          351 MVHILFSGYLHNDH  364 (372)
Q Consensus       351 ~~h~~~~~~~~~~~  364 (372)
                      ..--.=.|++.+.+
T Consensus      2407 p~e~ak~gfFr~~g 2420 (2439)
T KOG1064|consen 2407 PSEHAKQGFFRNIG 2420 (2439)
T ss_pred             chhhcccchhhhcC
Confidence            54333345555544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=1.9e-09  Score=95.43  Aligned_cols=236  Identities=14%  Similarity=0.141  Sum_probs=168.3

Q ss_pred             ccCCceeEeeeeeCCCCCccc-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPV-DQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      ++.+..+++|+|........+ .+|...|.--.|-|.  .+-+++++.||++++=.+..............|.++|.-++
T Consensus       160 gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkla  239 (559)
T KOG1334|consen  160 GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLA  239 (559)
T ss_pred             cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceee
Confidence            555567889999988776665 479999988889883  45689999999999988765545554555778888999999


Q ss_pred             ECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccc-------cceeccC--------------------------
Q 017421          177 LSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-------LDFSAAD--------------------------  222 (372)
Q Consensus       177 ~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------------------  222 (372)
                      .-|+. ..|.+++.|+.+.-.|++.+..............       +...|..                          
T Consensus       240 v~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~  319 (559)
T KOG1334|consen  240 VEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN  319 (559)
T ss_pred             ecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc
Confidence            99954 5588899999999999877654322221111111       0011100                          


Q ss_pred             -----------C-CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C----------eEEE-EeecCCC--CeEEE
Q 017421          223 -----------D-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N----------KLSL-RILAHTS--DVNTV  275 (372)
Q Consensus       223 -----------~-~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~--~----------~~~~-~~~~~~~--~v~~~  275 (372)
                                 . ......|++++|+.++.-|.++..|-.|++|.-.-  |          ..+. .+++|..  .|..+
T Consensus       320 n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV  399 (559)
T KOG1334|consen  320 NGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV  399 (559)
T ss_pred             cchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence                       0 12235789999998888788888888899995332  2          1222 2667754  57788


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      .|-.|...++++|+.-|.|-||+-.+      +.+...-|+++.=+|--..||++.      -|..|+||--
T Consensus       400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP  465 (559)
T KOG1334|consen  400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTP  465 (559)
T ss_pred             eeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecC
Confidence            88778899999999999999999763      334445889999899888888774      3777888865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.12  E-value=1.2e-07  Score=84.52  Aligned_cols=211  Identities=16%  Similarity=0.137  Sum_probs=136.5

Q ss_pred             ECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeeeccc-C---CcceEEEEECCCCCEEEEEeC--CCeEEE
Q 017421          132 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS-L---RWTVTDTSLSPDQRHLVYASM--SPIVHI  195 (372)
Q Consensus       132 ~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~~~~~--dg~i~v  195 (372)
                      ++||++.|.++..          +..|.|||+.+.+.+..+..... .   ......++++|||+++++...  +..|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998876654          78999999999877766543222 0   123457899999999998763  688999


Q ss_pred             EECCCCceeeecceeecccccce--------eccC--------CCCccccEEEE--------------EEcC-CCCEEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDF--------SAAD--------DGGYSFGIFSL--------------KFST-DGRELVA  244 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~~h~~~i~~~--------------~~sp-~~~~l~s  244 (372)
                      .|+.+++................        ..+.        ..|. ......              .|.+ +|+++..
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v  211 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP  211 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc-eEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence            99999887654443221111000        0000        0010 011111              2234 7877777


Q ss_pred             EeCCCeEEEEECCCC-----eEEEEeec-------CCCCeEEEEEeCCCCCEEEEEe----------CCCeEEEEecccc
Q 017421          245 GSSDDCIYVYDLEAN-----KLSLRILA-------HTSDVNTVCFGDESGHLIYSGS----------DDNLCKVNSVLLL  302 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~-----~~~~~~~~-------~~~~v~~~~~sp~~~~~l~s~~----------~dg~i~vwd~~~~  302 (372)
                      ... |+|.+.|+...     .....+..       ..+...-++++ ++++.+++..          ..+.|.++|..+.
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~-~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~  289 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH-RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG  289 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc-CCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence            665 99999996443     22222211       22344459999 8887777642          1257999998755


Q ss_pred             c-----CCCCCeeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          303 T-----RSINPCNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       303 ~-----~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +     .....+..++++|||+ +|++...     -++.|.+.|..+++.+++.
T Consensus       290 kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-----~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       290 KRLRKIELGHEIDSINVSQDAKPLLYALST-----GDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eEEEEEeCCCceeeEEECCCCCeEEEEeCC-----CCCcEEEEECcCCeEEeee
Confidence            4     3456889999999999 7776631     2677899999999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.12  E-value=1.6e-09  Score=92.07  Aligned_cols=172  Identities=16%  Similarity=0.226  Sum_probs=119.7

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-----cceEEEEECC-CCCEEEEEeCCCeEE
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSP-DQRHLVYASMSPIVH  194 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~dg~i~  194 (372)
                      ..|+-.|+++.++.|+..++++. |-.|-+|+++-........-.+++.     .-|++..|+| ..+.++..+..|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            56899999999999999888865 5789999998543333333333332     3588999999 566788888999999


Q ss_pred             EEECCCCce-eeecceeecccccceeccCCC---CccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCC
Q 017421          195 IVDVGSGTM-ESLANVTEIHDGLDFSAADDG---GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHT  269 (372)
Q Consensus       195 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~  269 (372)
                      +.|++.... .....+.+..+.    |.+..   +--..|..+.|+++|+++++-+. -+|++||+. ..+++.+++-|.
T Consensus       240 LcDmR~~aLCd~hsKlfEeped----p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPED----PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             EeechhhhhhcchhhhhccccC----CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence            999985432 111111111000    00000   11246888999999999988653 789999994 455666666552


Q ss_pred             ------------CCe---EEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          270 ------------SDV---NTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       270 ------------~~v---~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                                  ..|   ..++|+ .++..++||+..+.++++++
T Consensus       315 ~lr~kLc~lYEnD~IfdKFec~~s-g~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  315 YLRSKLCSLYENDAIFDKFECSWS-GNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             hHHHHHHHHhhccchhheeEEEEc-CCcceEecccccceEEEecC
Confidence                        122   357899 88999999999999999995

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.10  E-value=5.4e-09  Score=94.81  Aligned_cols=144  Identities=20%  Similarity=0.182  Sum_probs=119.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL  216 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  216 (372)
                      ..++-|...|.|.+|++..++...+ .....|.++|.++.++.+-..|.+++.|+.+..|+.......+....       
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-------  142 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-------  142 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEE-EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-------
Confidence            4577788899999999998855444 44567888999999999999999999999999999998877655542       


Q ss_pred             ceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC-----CCEEEEE-eC
Q 017421          217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-----GHLIYSG-SD  290 (372)
Q Consensus       217 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~~l~s~-~~  290 (372)
                               ....+.+++.+|||..+++++  ++|++||+++++.+..+.+|.++|.++.|. .+     |.++.++ ..
T Consensus       143 ---------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~-~~~~g~~G~~vLssa~~  210 (541)
T KOG4547|consen  143 ---------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFT-TLIDGIIGKYVLSSAAA  210 (541)
T ss_pred             ---------CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEE-Eeccccccceeeecccc
Confidence                     223688999999999999886  889999999999999999999999999997 55     5665554 45


Q ss_pred             CCeEEEEecc
Q 017421          291 DNLCKVNSVL  300 (372)
Q Consensus       291 dg~i~vwd~~  300 (372)
                      +.-+.+|-++
T Consensus       211 ~r~i~~w~v~  220 (541)
T KOG4547|consen  211 ERGITVWVVE  220 (541)
T ss_pred             ccceeEEEEE
Confidence            5668888775

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.10  E-value=2.3e-08  Score=97.83  Aligned_cols=188  Identities=14%  Similarity=0.057  Sum_probs=129.5

Q ss_pred             ccCCceeEeeeeeCCCCC-------ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEE--E-eeeccc
Q 017421          100 SAADCCHMLSRYLPVNGP-------WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQ--K-DILAKS  167 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~--~-~~~~~~  167 (372)
                      .+.|..+++|+.......       ........++.++...++++.+|+++.||.|.+.+++..  ....  . ......
T Consensus      1067 gS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1067 GSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred             ecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence            556677889998765443       122335788999999999999999999999999998762  1110  1 111111


Q ss_pred             CCcce-EEEEECC-CCC-EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          168 LRWTV-TDTSLSP-DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       168 ~~~~v-~~~~~~~-~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      ..+.+ ..-+|.. .+. .++.+..-+.|..||+++.......+...              ..+.|++++.+|.+++++.
T Consensus      1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~--------------~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL--------------RHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred             CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc--------------cccceeEEEecCCceEEEE
Confidence            12223 3333433 333 68888889999999998765433332221              2248999999999999999


Q ss_pred             EeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEeCCCC--CEEEEEe--CCCeEEEEeccc
Q 017421          245 GSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG--HLIYSGS--DDNLCKVNSVLL  301 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~~l~s~~--~dg~i~vwd~~~  301 (372)
                      |+..|.+.+||++-+.++..+. .+..++..+..+|--+  ...++++  ..+.|.+|++.+
T Consensus      1213 Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence            9999999999999888777765 3446788877774333  4555554  467899999863

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.7e-08  Score=94.58  Aligned_cols=156  Identities=21%  Similarity=0.166  Sum_probs=101.7

Q ss_pred             cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccCC
Q 017421          147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  223 (372)
Q Consensus       147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (372)
                      .|.++|...... ..   .......+....|+|||+.|+..+.+   ..|++||+.+++...+....             
T Consensus       199 ~l~i~d~dG~~~-~~---l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-------------  261 (448)
T PRK04792        199 QLMIADYDGYNE-QM---LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-------------  261 (448)
T ss_pred             EEEEEeCCCCCc-eE---eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-------------
Confidence            577777655422 22   22334478899999999999877543   36899999887654332211             


Q ss_pred             CCccccEEEEEEcCCCCEEEE-EeCCCe--EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCe--EEEE
Q 017421          224 GGYSFGIFSLKFSTDGRELVA-GSSDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNL--CKVN  297 (372)
Q Consensus       224 ~~h~~~i~~~~~sp~~~~l~s-~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg~--i~vw  297 (372)
                          .......|+|||+.|+. .+.++.  |.++|+.+++. ..+..+.......+|+ |||+.|+..+. ++.  |.++
T Consensus       262 ----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        262 ----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             ----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence                12346789999998865 455564  88889987764 3445455566788999 89988776553 444  5555


Q ss_pred             eccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421          298 SVLLLT-----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       298 d~~~~~-----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      |+....     .........+|+|||++|+...
T Consensus       336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence            654221     1222334679999999988764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=1.3e-07  Score=96.93  Aligned_cols=211  Identities=11%  Similarity=0.050  Sum_probs=133.9

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeec-------ccC-------CcceEEEEECC-CCCEEEEEeC
Q 017421          126 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA-------KSL-------RWTVTDTSLSP-DQRHLVYASM  189 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~-------~~~v~~~~~~~-~~~~l~~~~~  189 (372)
                      ...+++++++++.|.++. ..+.|+++|+.++. +..+...       .+.       -.....++++| ++..+++.+.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            468899999888665554 45679999987763 2221100       000       11356899999 5666667677


Q ss_pred             CCeEEEEECCCCceeeecceeecccccceeccC-CCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeec
Q 017421          190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD-DGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      ++.|++||..++.......  ..... ...... ..........|+++|+++.| ++-+.++.|++||+.++.......+
T Consensus       704 ~~~I~v~d~~~g~v~~~~G--~G~~~-~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg  780 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSG--DGYER-NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG  780 (1057)
T ss_pred             CCeEEEEECCCCeEEEEec--CCccc-cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            8999999998775432110  00000 000000 00112356789999999844 5556678999999987653211100


Q ss_pred             ---------------------CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----C--------------CCC
Q 017421          268 ---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----R--------------SIN  307 (372)
Q Consensus       268 ---------------------~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~--------------~~~  307 (372)
                                           .-.....++++ ++|+++++-..++.|++||..+..     +              .-.
T Consensus       781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~  859 (1057)
T PLN02919        781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS  859 (1057)
T ss_pred             ccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence                                 01134688998 899988888899999999986321     1              112


Q ss_pred             CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          308 PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       308 ~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      ....++++++|+.+++-+      .++.|++||..+++..
T Consensus       860 ~P~GIavd~dG~lyVaDt------~Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        860 EPAGLALGENGRLFVADT------NNSLIRYLDLNKGEAA  893 (1057)
T ss_pred             CceEEEEeCCCCEEEEEC------CCCEEEEEECCCCccc
Confidence            567899999998666544      5789999999988753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=3.5e-09  Score=98.01  Aligned_cols=188  Identities=7%  Similarity=0.058  Sum_probs=126.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------------EEEeeecccCCcceEEEEECCCCCEEEEEeCCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  191 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  191 (372)
                      .....|+.|+.+..++++|+.||.++|..+.+...            +.....+.+|...|.-+.|+.+.+.|-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            45678999999999999999999999998875311            111233568999999999999999999999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---------E
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---------S  262 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~---------~  262 (372)
                      .|.||-+-.+.........              ...+-|.+++|+.||..|+....||.|.+=.++..+.         +
T Consensus        94 lIiVWmlykgsW~EEMiNn--------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l  159 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINN--------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLL  159 (1189)
T ss_pred             eEEEEeeecccHHHHHhhC--------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhec
Confidence            9999998777642222111              1234789999999999998888888766544332110         0


Q ss_pred             E---------------------Ee----------------------ecCCCCeEEEEEe-------CCCCCEEEEEeCCC
Q 017421          263 L---------------------RI----------------------LAHTSDVNTVCFG-------DESGHLIYSGSDDN  292 (372)
Q Consensus       263 ~---------------------~~----------------------~~~~~~v~~~~~s-------p~~~~~l~s~~~dg  292 (372)
                      .                     ..                      ......|..+.|.       ||+...|+++-.+|
T Consensus       160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG  239 (1189)
T KOG2041|consen  160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG  239 (1189)
T ss_pred             cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence            0                     00                      0001123334443       46666777777777


Q ss_pred             eEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEe
Q 017421          293 LCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       293 ~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .+.+-.-..     +-...-.+..+.|+++|..|+++.
T Consensus       240 r~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             eehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence            766643221     112234568889999999999874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.05  E-value=2.3e-08  Score=89.35  Aligned_cols=221  Identities=15%  Similarity=0.123  Sum_probs=140.6

Q ss_pred             CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC----
Q 017421          116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----  191 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----  191 (372)
                      ....+....-++..++|||.|.+|++.... .|.+|.-.....+..    ..|. .|..+.|+|.+++|.+-+..+    
T Consensus        24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~----~~~~-~V~~~~fSP~~kYL~tw~~~pi~~p   97 (561)
T COG5354          24 IHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVR----FRHP-DVKYLDFSPNEKYLVTWSREPIIEP   97 (561)
T ss_pred             ccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheee----eecC-CceecccCcccceeeeeccCCccCh
Confidence            334444467788999999999999987764 589999877654333    1233 489999999999999866543    


Q ss_pred             -----------eEEEEECCCCceeeecceeecc-cc---c----------------------------------------
Q 017421          192 -----------IVHIVDVGSGTMESLANVTEIH-DG---L----------------------------------------  216 (372)
Q Consensus       192 -----------~i~vwd~~~~~~~~~~~~~~~~-~~---~----------------------------------------  216 (372)
                                 .+.+||+.++............ .+   +                                        
T Consensus        98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~  177 (561)
T COG5354          98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGIL  177 (561)
T ss_pred             hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcccccee
Confidence                       4899999888765433211110 00   0                                        


Q ss_pred             --ceeccCC-----------------------------------------------------------------------
Q 017421          217 --DFSAADD-----------------------------------------------------------------------  223 (372)
Q Consensus       217 --~~~~~~~-----------------------------------------------------------------------  223 (372)
                        .++|...                                                                       
T Consensus       178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL  257 (561)
T COG5354         178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL  257 (561)
T ss_pred             eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence              1111100                                                                       


Q ss_pred             -------------CCccccEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 017421          224 -------------GGYSFGIFSLKFSTDGRELVA--GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG  288 (372)
Q Consensus       224 -------------~~h~~~i~~~~~sp~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~  288 (372)
                                   .+-.++|...+|.|.++.+++  |..+..+.++|++.. ....+  ....-..+.|+ |.+++++.+
T Consensus       258 yl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fs-p~~r~il~a  333 (561)
T COG5354         258 YLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFS-PHERYILFA  333 (561)
T ss_pred             EEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCccccccccc-CcccEEEEe
Confidence                         012456666667666655543  334556666766644 32222  23344567788 899999988


Q ss_pred             eCC---CeEEEEeccc-c----cCCCCCeeEEEeccCCCeEEEEeeee-EEEeeceEEEeecccceEE
Q 017421          289 SDD---NLCKVNSVLL-L----TRSINPCNKYLFNPCNKYLIIYLILV-ISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       289 ~~d---g~i~vwd~~~-~----~~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~d~~i~lw~~~~~~~~  347 (372)
                      +.|   |.+-+||... +    .-.....+-+.|+|||+++.+....- .+. |+.++||++......
T Consensus       334 gF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~-Dn~i~l~~v~g~~~f  400 (561)
T COG5354         334 GFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRV-DNSIKLWDVYGAKVF  400 (561)
T ss_pred             cCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccccc-CcceEEEEecCchhh
Confidence            765   6799999751 1    12334456678999999998874333 344 899999998765443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=1.3e-07  Score=79.04  Aligned_cols=206  Identities=18%  Similarity=0.187  Sum_probs=115.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          129 VSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                      .++.+.+|++||+. .|..|.|-....+  ..+.+....+...-.-.-++|+||+..||.+...|.|+++|+.......+
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            35678899987764 5677887776543  12222222333222457899999999999999999999999875432211


Q ss_pred             ccee-------ecccccceeccCC---------------------------------------CCccccEEEEEEcCCCC
Q 017421          207 ANVT-------EIHDGLDFSAADD---------------------------------------GGYSFGIFSLKFSTDGR  240 (372)
Q Consensus       207 ~~~~-------~~~~~~~~~~~~~---------------------------------------~~h~~~i~~~~~sp~~~  240 (372)
                      ....       ....++.|.....                                       ..+...|+++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            1100       0011111111100                                       12345778888888877


Q ss_pred             EEEEEeCCCe-----------EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---ccCCC
Q 017421          241 ELVAGSSDDC-----------IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---LTRSI  306 (372)
Q Consensus       241 ~l~s~s~dg~-----------i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---~~~~~  306 (372)
                      +|++|+....           +..|.+-++.+...          ...+ .+...-......+..++-.++.   .....
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk----------~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~  229 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK----------QVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQ  229 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEE----------Eccc-cCccccccccccceeeccceeeeeccccCC
Confidence            7776654221           22222222211111          0011 1111111111122222222221   12456


Q ss_pred             CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      ..|..|..||||+.|++..      .+|.|.||++.+.+..+.+.-
T Consensus       230 d~i~kmSlSPdg~~La~ih------~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIH------FSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CceEEEEECCCCCEEEEEE------cCCeEEEEecCcchhhcccch
Confidence            7899999999999999886      689999999999888777654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=3.1e-08  Score=91.96  Aligned_cols=211  Identities=10%  Similarity=0.067  Sum_probs=142.5

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|.+.|..+.|+.+.+.|-+...+|.|.||-+..+.-....+ ....++.|.+++|+.||..|+....||.|.|=.
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            4678999999999999999999999999999999998874333222 334456799999999999999999999887766


Q ss_pred             CCCCceeeecceeecccccceeccCC------------------------------------CCccccEEEEEEc-----
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADD------------------------------------GGYSFGIFSLKFS-----  236 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~h~~~i~~~~~s-----  236 (372)
                      ++..+.-..........++.++++..                                    ......|-.+.|.     
T Consensus       144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            65443211100000000111111100                                    0011124445553     


Q ss_pred             ---CCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---------CeEEEEec-----
Q 017421          237 ---TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---------NLCKVNSV-----  299 (372)
Q Consensus       237 ---p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---------g~i~vwd~-----  299 (372)
                         ||...|+++..+|.+.+-.-.+......+. ..-.+....|+ ++|..|++++.+         +.|++|..     
T Consensus       224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWn-h~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~  301 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWN-HNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIV  301 (1189)
T ss_pred             cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceec-CCCcEEEEccCcccccCccccceEEEeccchhhe
Confidence               466678888888887776544433222232 23567889999 999999998764         36777764     


Q ss_pred             ccccCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          300 LLLTRSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       300 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      .+++.....|++++|--.|-.++.+.++++.+
T Consensus       302 gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf  333 (1189)
T KOG2041|consen  302 GTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF  333 (1189)
T ss_pred             EEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence            36777888999999999999999888777655

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.95  E-value=5.9e-09  Score=96.86  Aligned_cols=234  Identities=18%  Similarity=0.169  Sum_probs=158.0

Q ss_pred             eEeeeeeCCCCCccccC-CCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC-
Q 017421          106 HMLSRYLPVNGPWPVDQ-TTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-  181 (372)
Q Consensus       106 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  181 (372)
                      +++--..|...+..+.. .+-.|-.+.|+|.  ..+-++......-.||++.....-.......+|...|+.+.|+|+. 
T Consensus        48 ~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p  127 (1081)
T KOG0309|consen   48 YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP  127 (1081)
T ss_pred             EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCC
Confidence            33333344444444433 2334777888874  3455555555667789987543333344577888899999999954 


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-e
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-K  260 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~  260 (372)
                      ..+++++.|-.+..||+++...... . ...             -......++|+.....+.+.+....|.+||++.| .
T Consensus       128 dVlatcsvdt~vh~wd~rSp~~p~y-s-~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~  192 (1081)
T KOG0309|consen  128 DVLATCSVDTYVHAWDMRSPHRPFY-S-TSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST  192 (1081)
T ss_pred             cceeeccccccceeeeccCCCccee-e-eec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence            5678889999999999987653111 1 111             1135678899875544555566678999999876 4


Q ss_pred             EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEE---eeeeEE
Q 017421          261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIY---LILVIS  330 (372)
Q Consensus       261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~---~~~~~~  330 (372)
                      ++..+++|...|+.+.|.......+.+++.|++|++||...-       .....+|+...+-|-|.-.++-   .+..+-
T Consensus       193 pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~  272 (1081)
T KOG0309|consen  193 PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP  272 (1081)
T ss_pred             ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeee
Confidence            778888999999999997455667889999999999998632       1345677777888866533322   222333


Q ss_pred             Ee--eceEEEeecccc-eEEEEEeeeE
Q 017421          331 IY--SPNILLDNYFLL-RTFYSFMVHI  354 (372)
Q Consensus       331 ~~--d~~i~lw~~~~~-~~~~~~~~h~  354 (372)
                      ++  +.....|++.++ +++..|.||.
T Consensus       273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~  299 (1081)
T KOG0309|consen  273 QLRCENSDLEWNVFDLNTPVHTFVGHD  299 (1081)
T ss_pred             eccccchhhhhccccCCcceeeecCcc
Confidence            33  356678988776 5799999995

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.94  E-value=4.9e-08  Score=83.19  Aligned_cols=208  Identities=12%  Similarity=0.095  Sum_probs=140.7

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ..+.||...|+....-|-..-+++.+.|.+++||--.+ ++..+.  .....+.+++++.+.++...|++|-..|++.-+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps--I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS--IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch--hhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            34678888888888888777799999999999996443 333222  223345579999999999999999999999888


Q ss_pred             ECCCCceeeec-ceeecccccceeccCCCCccccEEEEEEcCCCCEEEE-------------------------------
Q 017421          197 DVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-------------------------------  244 (372)
Q Consensus       197 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-------------------------------  244 (372)
                      .+...-..... +...             .|...+..+-|+-...++++                               
T Consensus        96 s~sedfnkm~~~r~~~-------------~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYL-------------AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             Ehhhhhhhcchhhhhh-------------hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            76432111000 0000             12223333333322222222                               


Q ss_pred             --------EeCCCeEEEEEC--CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCC
Q 017421          245 --------GSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSIN  307 (372)
Q Consensus       245 --------~s~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~  307 (372)
                              |...|.|.+-.+  ..-..+.++.+|.+.+++++|. +...+|++|..|..+.+||+.       .+.+|..
T Consensus       163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~  241 (404)
T KOG1409|consen  163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND  241 (404)
T ss_pred             eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence                    223333333322  2234566778999999999999 888999999999999999986       3447888


Q ss_pred             CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          308 PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       308 ~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      .|..+...+--+.+.++.      -|+.|.+|+....+..
T Consensus       242 kV~~l~~~~~t~~l~S~~------edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  242 KVQALSYAQHTRQLISCG------EDGGIVVWNMNVKRVE  275 (404)
T ss_pred             hhhhhhhhhhheeeeecc------CCCeEEEEeccceeec
Confidence            888888877777777664      5888999988876643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.92  E-value=1.2e-08  Score=88.58  Aligned_cols=173  Identities=11%  Similarity=0.016  Sum_probs=117.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC--
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--  248 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d--  248 (372)
                      .+..+..++++++++++..+....++++.....  ...+.....           -...-+.+.|..+......+..-  
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~-----------v~~~~~ai~~~~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSC-----------VPKRPTAISFIREDTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEee-----------cccCcceeeeeeccceEEEEeecCC
Confidence            355667788899999998888877777765442  011100000           00123344444444444444333  


Q ss_pred             -CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------c-ccCCCCCeeEEEeccCCCe
Q 017421          249 -DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------L-LTRSINPCNKYLFNPCNKY  320 (372)
Q Consensus       249 -g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~-~~~~~~~v~~~~~s~~g~~  320 (372)
                       ..+.+|....+.+ ..+-+|-..++.++|+ ||+++|+++..|..|++-...      + .-+|..-|..++.-++.. 
T Consensus       131 ~~~~di~s~~~~~~-~~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-  207 (390)
T KOG3914|consen  131 VYSFDILSADSGRC-EPILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-  207 (390)
T ss_pred             ceeeeeecccccCc-chhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-
Confidence             4455665555444 3445899999999999 999999999999999997665      2 227999999999988754 


Q ss_pred             EEEEeeeeEEEeeceEEEeecccceEEEEEeeeEEEeeecccCCc
Q 017421          321 LIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHN  365 (372)
Q Consensus       321 l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~~~~~~~~~~~  365 (372)
                      |++++      =|+++++||+.+|+.+..+..-.++.-|++...+
T Consensus       208 LlS~s------GD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~  246 (390)
T KOG3914|consen  208 LLSGS------GDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPP  246 (390)
T ss_pred             eeecC------CCCcEEEEecccCCcccccchhHhhhhccccCch
Confidence            55543      3999999999999999888777777777765543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=2.5e-07  Score=82.17  Aligned_cols=151  Identities=17%  Similarity=0.173  Sum_probs=117.9

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      ....-+|.+.|.-..+..+++-++.|..|| .+-|||..+++...    ..+.-+.|.++..+|+|++++.+.....+.+
T Consensus       352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr----~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR----IEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE----eeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            334457888899999999888999999999 89999999884333    2233347999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeEEEEeecCCCC
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLRILAHTSD  271 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~  271 (372)
                      .|+.++....+-+..                .+-|+.++|||++++||-+--+|    .|+++|+..++.... +.....
T Consensus       428 ididngnv~~idkS~----------------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~  490 (668)
T COG4946         428 IDIDNGNVRLIDKSE----------------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAY  490 (668)
T ss_pred             EEecCCCeeEecccc----------------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCccc
Confidence            999999875544422                23799999999999999876655    699999998876443 334444


Q ss_pred             eEEEEEeCCCCCEEEEEe
Q 017421          272 VNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~  289 (372)
                      =.+-+|. |++++|..-+
T Consensus       491 DfsPaFD-~d~ryLYfLs  507 (668)
T COG4946         491 DFSPAFD-PDGRYLYFLS  507 (668)
T ss_pred             ccCcccC-CCCcEEEEEe
Confidence            4677888 8999877554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.6e-07  Score=83.54  Aligned_cols=197  Identities=14%  Similarity=0.162  Sum_probs=122.9

Q ss_pred             CceEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421          125 SRAYVSQFSADGSLFVAGFQ-----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  193 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  193 (372)
                      ..|.-+.|||+.++|++-+.           ...++|||+.+|...............-.-+.||.|++++|....+ .|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence            35788999999999998542           2579999999997766654432222222346899999999987764 56


Q ss_pred             EEEECCCCceeeecce-eecccccceeccC--------------------------------------------------
Q 017421          194 HIVDVGSGTMESLANV-TEIHDGLDFSAAD--------------------------------------------------  222 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------------------------------------  222 (372)
                      .||+...-.......+ .....+..++|..                                                  
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence            6776533211100000 0011111111110                                                  


Q ss_pred             --------CC------------------------CccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCC----eEEE
Q 017421          223 --------DG------------------------GYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEAN----KLSL  263 (372)
Q Consensus       223 --------~~------------------------~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~----~~~~  263 (372)
                              ..                        .-...|...+|-|.|+.+++-+.+   .++.+|-+++.    +.+.
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence                    00                        123456667888988877655433   46888877632    2233


Q ss_pred             EeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccc--cc----CCCCCeeEEEeccCCCeEEEEe
Q 017421          264 RILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLL--LT----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       264 ~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~--~~----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .+..  ...+.+.|+ |.|++++.+.   ..|.+.++|+..  .+    ......+.+.|.|.|+++++++
T Consensus       489 ~~dk--~~~N~vfws-PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s  556 (698)
T KOG2314|consen  489 ELDK--KFANTVFWS-PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS  556 (698)
T ss_pred             hhcc--cccceEEEc-CCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence            3332  456789999 9999988764   578899999872  11    2234568899999999999884

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.89  E-value=6.8e-09  Score=104.91  Aligned_cols=171  Identities=15%  Similarity=0.131  Sum_probs=130.2

Q ss_pred             ccCCceeEeeeeeCCCCCccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      +++|..+++|.+-.......++. -+..|+.+.|+.+|+.+.++..||.+.+|.....    .......|......+.|-
T Consensus      2226 gs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk----~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2226 GSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK----PYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred             cCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc----ceeccccCCccccceeee
Confidence            55566677777766665544432 2388999999999999999999999999998743    223355666667777776


Q ss_pred             CCCCEEEEEeC---CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421          179 PDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD  255 (372)
Q Consensus       179 ~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd  255 (372)
                      .  ..+++++.   ++.+.+||..-........  .             .|...++++++-|..++|++|+.+|.|++||
T Consensus      2302 ~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-------------~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-------------CHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             e--hhhhccccCCCCCcccchhcccCcccceee--e-------------ecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence            4  55666543   6789999976544332222  2             3667999999999999999999999999999


Q ss_pred             CCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc
Q 017421          256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL  302 (372)
Q Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~  302 (372)
                      ++..+.+++++.         +  ....+|++|+..|.|+||++...
T Consensus      2365 ~rqrql~h~~~~---------~--~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------L--DTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             hHHHHHHHHhhh---------h--hhhheeeccCcccceEEEEcccc
Confidence            999888777664         3  25679999999999999999743

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.89  E-value=7.3e-07  Score=73.76  Aligned_cols=165  Identities=12%  Similarity=0.013  Sum_probs=111.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE-ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS-LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      ...||.|+..|...+|...+.+.......  .+...|+-+. .......+..++.|.++++.+++.+..........   
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---  158 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---  158 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeec--ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence            35688998999999999986543332111  1111111111 11112336667788888888887665432222110   


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEE-EeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSL-RILAHTSDVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~~~~~v~~~~~sp~~~~~l~s~~~d  291 (372)
                                   -..+++++++|++++++.+....|..|.+....  .+. .....+..-.+..|+ .....+|++..|
T Consensus       159 -------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qd  224 (344)
T KOG4532|consen  159 -------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQD  224 (344)
T ss_pred             -------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecC
Confidence                         137889999999999999988999999987542  222 222334455688999 888999999999


Q ss_pred             CeEEEEecccc-----------cCCCCCeeEEEeccCCC
Q 017421          292 NLCKVNSVLLL-----------TRSINPCNKYLFNPCNK  319 (372)
Q Consensus       292 g~i~vwd~~~~-----------~~~~~~v~~~~~s~~g~  319 (372)
                      |++.|||+|.+           ..|.+.+..+.|++.|.
T Consensus       225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            99999999832           26888999999998764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.87  E-value=7.4e-07  Score=89.87  Aligned_cols=204  Identities=16%  Similarity=0.152  Sum_probs=132.7

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEE----eCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ...+.|.++.+-++...++.+..+|.|.+.    +........    .......|.+++||||+..|+..+.++++.+..
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~----VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI----VGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE----EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            345789999999999999999999999999    554442211    223334699999999999999999999888764


Q ss_pred             CCCCceeeecceee-------------cccccceeccC----------------CCC---ccccEEEEEEcCCCCEEEEE
Q 017421          198 VGSGTMESLANVTE-------------IHDGLDFSAAD----------------DGG---YSFGIFSLKFSTDGRELVAG  245 (372)
Q Consensus       198 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~----------------~~~---h~~~i~~~~~sp~~~~l~s~  245 (372)
                      - .........+..             +.....|.+..                +.+   +...-..|+|-.||.++|+.
T Consensus       149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence            2 111111110000             00000110000                001   23356789999999999987


Q ss_pred             eC---C---CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEeccc-------c--cCCCC
Q 017421          246 SS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSVLL-------L--TRSIN  307 (372)
Q Consensus       246 s~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~~~-------~--~~~~~  307 (372)
                      +.   .   ..++||+-+ |....+-..-.+--.+++|- |.|++||+.-.   ...|.+|...-       +  .....
T Consensus       228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~  305 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEE  305 (928)
T ss_pred             EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCc
Confidence            74   2   469999866 66544433333334578999 99999998764   35577777541       1  13456


Q ss_pred             CeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          308 PCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       308 ~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                      .|..+.|++|+..||+.....+.+|
T Consensus       306 ~v~~l~Wn~ds~iLAv~~~~~vqLW  330 (928)
T PF04762_consen  306 KVIELAWNSDSEILAVWLEDRVQLW  330 (928)
T ss_pred             eeeEEEECCCCCEEEEEecCCceEE
Confidence            7999999999999998754334443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=6.6e-09  Score=93.59  Aligned_cols=171  Identities=10%  Similarity=0.141  Sum_probs=122.3

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eE---EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  193 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  193 (372)
                      ..+.+|...|..++--.+.+.+++++.|.+|++|.+... ..   .........|+.+|.++.|-.+-+.+++  .||.|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence            346789999999887778888999999999999998742 11   1233456788889999999998887775  48899


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEee-----c
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRIL-----A  267 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-----~  267 (372)
                      ++||.--++........ ..+          +-...|.|+. +-+...++.| +...+|+++|.+..+-...++     +
T Consensus       807 HlWDPFigr~Laq~~da-pk~----------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~  874 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDA-PKE----------GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG  874 (1034)
T ss_pred             eeecccccchhHhhhcC-ccc----------CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence            99998766653322111 100          1122344432 1234445444 778999999999876544443     3


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421          268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT  303 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~  303 (372)
                      ...-+.+++.. +.|+.++.+-.+|.|.+.|.++.+
T Consensus       875 Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  875 PNALTRAIAVA-DKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             CchheeEEEec-cCcchhhHHhcCCcEEEEecCCCc
Confidence            44568899998 999999999999999999998665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=4.6e-07  Score=82.05  Aligned_cols=163  Identities=14%  Similarity=0.166  Sum_probs=111.2

Q ss_pred             EEEECCCCCEEEE-Ee--C---------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE--EeCCCeEE
Q 017421          129 VSQFSADGSLFVA-GF--Q---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY--ASMSPIVH  194 (372)
Q Consensus       129 ~~~~s~~~~~l~~-~~--~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~  194 (372)
                      .+.|++-|+-|++ ++  -         +.++++.+++.. ....   .....++|.++.|+|+++.+++  |-.-..+.
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V---~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSV---PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVT  297 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEE---ecCCCCCceEEEECCCCCEEEEEEecccceEE
Confidence            4678877664332 21  1         236888887733 2222   2233458999999999987665  45567899


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCCC
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSD  271 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~  271 (372)
                      ++|++..-   +..+.+                ++-+++-|+|.|++|+.++-+   |.|.+||+.+.+++..+....  
T Consensus       298 ifnlr~~~---v~df~e----------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--  356 (566)
T KOG2315|consen  298 IFNLRGKP---VFDFPE----------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--  356 (566)
T ss_pred             EEcCCCCE---eEeCCC----------------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--
Confidence            99987532   222222                367889999999999876654   789999999988887776543  


Q ss_pred             eEEEEEeCCCCCEEEEEeC------CCeEEEEeccc--c-cCCCC-CeeEEEeccC
Q 017421          272 VNTVCFGDESGHLIYSGSD------DNLCKVNSVLL--L-TRSIN-PCNKYLFNPC  317 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~------dg~i~vwd~~~--~-~~~~~-~v~~~~~s~~  317 (372)
                      -+-+.|+ |||++|+|+..      |+.++||+..-  + ..+-. ....+.|-|.
T Consensus       357 tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  357 TTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             ceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeeeec
Confidence            3557899 99999998864      68899999851  1 11112 4677777764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.81  E-value=7e-09  Score=85.00  Aligned_cols=165  Identities=7%  Similarity=0.053  Sum_probs=105.1

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCe
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPI  192 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~  192 (372)
                      +.+..|.++-.+-+.+--++.++++..||.+.+++.+....+.... ...|.+ -.+.+....++.+.++..     -+.
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI-PSIHSG-SASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc-cccccc-ccccceeecccEEecCCcceEeeccc
Confidence            3444444444444555567789999999999999987632111111 111111 112222334444443321     234


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EEEEeecCCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLRILAHTS  270 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~  270 (372)
                      .+.|+++..+.......                -...|.+++-+|.. +.+++|+.||.+-+||.+... +...+..|+.
T Consensus       161 ~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~  224 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA  224 (319)
T ss_pred             eeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh
Confidence            55666554332111110                11248888888865 566789999999999999774 3445678999


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      ++..+-|+|.++..|++++.||.+-.||..
T Consensus       225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             hhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            999999999999999999999999999976

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=9.6e-07  Score=90.64  Aligned_cols=175  Identities=20%  Similarity=0.215  Sum_probs=111.6

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEee-----eccc------CCcceEEEEECCCCCEEE-EEeCCCe
Q 017421          126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDI-----LAKS------LRWTVTDTSLSPDQRHLV-YASMSPI  192 (372)
Q Consensus       126 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~------~~~~v~~~~~~~~~~~l~-~~~~dg~  192 (372)
                      ..+.++|+| ++.++++...++.|++||..++......-     ...+      .-.....++++|+++.|+ +-+.++.
T Consensus       684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            346789999 56666777778899999988764321100     0000      112466799999998554 5556789


Q ss_pred             EEEEECCCCceeeecceee-cccc-cceeccCC---CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-
Q 017421          193 VHIVDVGSGTMESLANVTE-IHDG-LDFSAADD---GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-  266 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~-~~~~-~~~~~~~~---~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-  266 (372)
                      |++||+.++.......-.. .... ..+.....   .........++++++|+++++-+.++.|++||..++....... 
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            9999998765321110000 0000 00000000   0011234688999999988888889999999998876543221 


Q ss_pred             ------------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          267 ------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       267 ------------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                                  +.-.....++++ ++|+++++-+.++.|++||+.+
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEe-CCCCEEEEECCCCEEEEEECCC
Confidence                        111256789999 8999888888999999999864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.78  E-value=1.6e-06  Score=71.73  Aligned_cols=149  Identities=13%  Similarity=0.007  Sum_probs=102.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          127 AYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      +.++++++|++++++.+....|..|.+.... .+.. .........-.+..|+.....+|+++.||.+.|||++......
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            8899999999999999999999999987542 2322 2233333345678999999999999999999999998755322


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeec-------CCC-CeEEE
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILA-------HTS-DVNTV  275 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~-~v~~~  275 (372)
                      ....           .....|.+.+..+.|+|-|.  +|...-.-+.+.+-|++++...+.+..       |.. .|..-
T Consensus       240 ~~~s-----------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt  308 (344)
T KOG4532|consen  240 AEIS-----------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT  308 (344)
T ss_pred             hhhc-----------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence            2211           11124788999999998663  444444457899999999875444431       222 36666


Q ss_pred             EEeCCCCCEEEEE
Q 017421          276 CFGDESGHLIYSG  288 (372)
Q Consensus       276 ~~sp~~~~~l~s~  288 (372)
                      .|+ .++.-+.+.
T Consensus       309 ~f~-~~n~s~~v~  320 (344)
T KOG4532|consen  309 NFN-NENESNDVK  320 (344)
T ss_pred             ccc-CCCcccccc
Confidence            666 555444444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=4.7e-08  Score=57.77  Aligned_cols=39  Identities=26%  Similarity=0.444  Sum_probs=36.6

Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS  298 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd  298 (372)
                      ++++.++.+|...|++++|+ |++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWS-PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence            46788999999999999999 8899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=1.5e-06  Score=80.53  Aligned_cols=148  Identities=18%  Similarity=0.174  Sum_probs=95.3

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEE-eC--CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-C-
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAG-FQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-  191 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~-~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-  191 (372)
                      ...+....+.+....|+|||+.|+.. +.  +..|.++++.++.. ..   ...+........|+|||+.|+..+.. + 
T Consensus       225 ~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~  300 (419)
T PRK04043        225 KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIVFVSDRLGY  300 (419)
T ss_pred             EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEEEEECCCCC
Confidence            34444456667778999999887654 32  34688888877643 22   11222223456899999988877642 2 


Q ss_pred             -eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeE
Q 017421          192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKL  261 (372)
Q Consensus       192 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---------g~i~iwd~~~~~~  261 (372)
                       .|+++|+.++....+...               +.    ....|+|||+.|+..+..         ..|.+.|+.++..
T Consensus       301 ~~Iy~~dl~~g~~~rlt~~---------------g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        301 PNIFMKKLNSGSVEQVVFH---------------GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             ceEEEEECCCCCeEeCccC---------------CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence             688889988776433220               01    124899999998766543         3688889888764


Q ss_pred             EEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 017421          262 SLRILAHTSDVNTVCFGDESGHLIYSGSD  290 (372)
Q Consensus       262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~  290 (372)
                       ..+... .......|+ |||+.|+....
T Consensus       362 -~~LT~~-~~~~~p~~S-PDG~~I~f~~~  387 (419)
T PRK04043        362 -RRLTAN-GVNQFPRFS-SDGGSIMFIKY  387 (419)
T ss_pred             -EECCCC-CCcCCeEEC-CCCCEEEEEEc
Confidence             344433 233468899 99998776654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=3.5e-08  Score=84.12  Aligned_cols=142  Identities=16%  Similarity=0.149  Sum_probs=102.0

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceec
Q 017421          141 AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA  220 (372)
Q Consensus       141 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      +.+.+..|-+-+++++-.  ..  + ...+.|.++.|...++++..|+.+|.|.++|++....-........        
T Consensus       229 s~G~sqqv~L~nvetg~~--qs--f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--------  295 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGHQ--QS--F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--------  295 (425)
T ss_pred             cccccceeEEEEeecccc--cc--c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--------
Confidence            334456677888887622  11  1 2445799999999999999999999999999987621111111000        


Q ss_pred             cCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeE---EEEeecCCCCeEEE--EEeCCCCCEEEEEeCCCeE
Q 017421          221 ADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTV--CFGDESGHLIYSGSDDNLC  294 (372)
Q Consensus       221 ~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~--~~sp~~~~~l~s~~~dg~i  294 (372)
                          -|.+.|+++..-. ++++|++.+.+|+|++||++--++   +.++.+|...-.-+  -.. +....+++++.|...
T Consensus       296 ----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  296 ----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYT  370 (425)
T ss_pred             ----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEE
Confidence                2667888887665 678999999999999999987766   78888886543332  334 555677889999999


Q ss_pred             EEEecc
Q 017421          295 KVNSVL  300 (372)
Q Consensus       295 ~vwd~~  300 (372)
                      |||.++
T Consensus       371 RiWsl~  376 (425)
T KOG2695|consen  371 RIWSLD  376 (425)
T ss_pred             EEEecc
Confidence            999998

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.75  E-value=3.8e-05  Score=66.16  Aligned_cols=196  Identities=19%  Similarity=0.160  Sum_probs=119.7

Q ss_pred             EeeeeeCCCCCccccCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec-cc-CCcceEEEEECCCCCE
Q 017421          107 MLSRYLPVNGPWPVDQTTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KS-LRWTVTDTSLSPDQRH  183 (372)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~  183 (372)
                      .++.+.+............ ..++++. +++. |+++... .+.++|+.++......... .. ....+..+++.|+|++
T Consensus        23 ~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~l   99 (246)
T PF08450_consen   23 RIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNL   99 (246)
T ss_dssp             EEEEEETTTTEEEEEESSS-EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-E
T ss_pred             EEEEEECCCCeEEEEecCC-CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCE
Confidence            3444444443333222233 7777887 6655 4444554 4566698887443322221 12 3456889999999997


Q ss_pred             EEEEeCC--------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEE
Q 017421          184 LVYASMS--------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVY  254 (372)
Q Consensus       184 l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iw  254 (372)
                      .++....        |.|..++.. ++.......                 -...+.|+|+|+++.|+ +-+..+.|..|
T Consensus       100 y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen  100 YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----------------LGFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----------------ESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCccccccccceEEECCC-CeEEEEecC-----------------cccccceEECCcchheeecccccceeEEE
Confidence            7776543        557777777 443322221                 12578999999998775 55677889999


Q ss_pred             ECCCCe-------EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEe-ccCCCeE
Q 017421          255 DLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLF-NPCNKYL  321 (372)
Q Consensus       255 d~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~-s~~g~~l  321 (372)
                      ++....       ....+....+....+++. .+|++.++....+.|.++|.+     .+.-....+++++| -++.+.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             eccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence            985321       111222222347889998 899988888789999999976     12222358899999 4676766


Q ss_pred             EEE
Q 017421          322 IIY  324 (372)
Q Consensus       322 ~~~  324 (372)
                      ++.
T Consensus       241 ~vT  243 (246)
T PF08450_consen  241 YVT  243 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.73  E-value=2.9e-08  Score=92.39  Aligned_cols=201  Identities=16%  Similarity=0.166  Sum_probs=134.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC--CEEEEEeCCCeEEEEECCCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSG  201 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~  201 (372)
                      .+.+..+.++|.|+-+|.++.-| +.+.|+...-..... ..+-..+.|-.+.|+|..  .+-++....-.-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            45778899999999999988866 667777654221111 112234467788898843  33344444444558988755


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeC
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp  279 (372)
                      ....+.....             ||...|+.+.|+|.. ..+++++.|..+..||+++.. ++.....-...-..|+|+-
T Consensus       102 s~~aIef~lh-------------ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny  168 (1081)
T KOG0309|consen  102 SSNAIEFVLH-------------GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY  168 (1081)
T ss_pred             CccceEEEEe-------------cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence            4333222221             688899999999976 467899999999999999864 4444443345567899995


Q ss_pred             CCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccC--CCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          280 ESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPC--NKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~--g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      .+++.+|+ +....|.+||++       ++++|...|+++.|..-  +..+..+       -|++++.||+......
T Consensus       169 k~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-------~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  169 KDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-------NDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             cCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-------CCCceeeecccccccc
Confidence            56665554 467779999998       45578888888888653  3444444       4777778877665443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=9.3e-07  Score=78.15  Aligned_cols=219  Identities=10%  Similarity=0.035  Sum_probs=150.2

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG  201 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~  201 (372)
                      |...|+.+.-. -.+++.+++.||.++.|.-..-..+.-......|-..|.+++.+-++.++.+.+. |..++++|+..-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            55666665443 4678999999999999986543333333345667778899999999999999777 999999998654


Q ss_pred             ceeeecceeecc----------------------ccc--ceecc--------CCCCccccEEEEEEcCCCCEEEEEeCCC
Q 017421          202 TMESLANVTEIH----------------------DGL--DFSAA--------DDGGYSFGIFSLKFSTDGRELVAGSSDD  249 (372)
Q Consensus       202 ~~~~~~~~~~~~----------------------~~~--~~~~~--------~~~~h~~~i~~~~~sp~~~~l~s~s~dg  249 (372)
                      .......+....                      .+.  .+.+.        .++-|.++|.++.++|.+..+++....|
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            433222111110                      000  00000        1145889999999999999999999899


Q ss_pred             eEEEEECCC------CeEEEE---------eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----------
Q 017421          250 CIYVYDLEA------NKLSLR---------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----------  303 (372)
Q Consensus       250 ~i~iwd~~~------~~~~~~---------~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------  303 (372)
                      .|.-|....      .+....         +........++.|+ |++..+.+-+.|..|++++.++.+           
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccccccCccceEEc-cccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence            999998772      111111         12234567899999 999999999999999999986211           


Q ss_pred             ---------------------------C-CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          304 ---------------------------R-SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       304 ---------------------------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                                                 . ....-+.+.|...|++|+-++-       --|++.++.++...+-+
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~-------~gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI-------LGIKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc-------eeEEEEEeecCeEEEEe
Confidence                                       1 1223477889999999988752       23567777777766544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.9e-06  Score=78.17  Aligned_cols=165  Identities=14%  Similarity=0.086  Sum_probs=116.0

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-  247 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-  247 (372)
                      .+.-+-+.|||.|.+|++-...| |.+|-=..-.......                 | ..|.-+.|||..+||++=+. 
T Consensus       210 nWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-----------------H-p~Vq~idfSP~EkYLVT~s~~  270 (698)
T KOG2314|consen  210 NWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-----------------H-PGVQFIDFSPNEKYLVTYSPE  270 (698)
T ss_pred             cceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-----------------C-CCceeeecCCccceEEEecCC
Confidence            44567899999999999988776 6788644332211111                 1 15888999999999997542 


Q ss_pred             ----------CCeEEEEECCCCeEEEEeecC--CCCeE-EEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCC
Q 017421          248 ----------DDCIYVYDLEANKLSLRILAH--TSDVN-TVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINP  308 (372)
Q Consensus       248 ----------dg~i~iwd~~~~~~~~~~~~~--~~~v~-~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~  308 (372)
                                ...+.|||+.+|...+.+...  ...+. -+.|| .|++++|--.. .+|.||+...+.      -....
T Consensus       271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~g  348 (698)
T KOG2314|consen  271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISG  348 (698)
T ss_pred             ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCcc
Confidence                      246999999999988777652  22232 36899 99999987655 568899876432      23457


Q ss_pred             eeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421          309 CNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL  355 (372)
Q Consensus       309 v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~  355 (372)
                      |....|+|.++.||--+...-.+ ..++.|-.+.+++.+++-+.|-.
T Consensus       349 Ir~FswsP~~~llAYwtpe~~~~-parvtL~evPs~~~iRt~nlfnV  394 (698)
T KOG2314|consen  349 IRDFSWSPTSNLLAYWTPETNNI-PARVTLMEVPSKREIRTKNLFNV  394 (698)
T ss_pred             ccCcccCCCcceEEEEcccccCC-cceEEEEecCccceeeeccceee
Confidence            88999999999888765433333 45667777777777777666544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=2.4e-08  Score=94.74  Aligned_cols=178  Identities=20%  Similarity=0.180  Sum_probs=126.9

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC--CeEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHI  195 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~v  195 (372)
                      ..|..|....+|++|+.+.++|++|+..|.|++|++.+|.....   ...|+++|+-+.-+.||..+++.+.-  ....+
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc---ccccccccccccccCCcceeeeeccccCchHHH
Confidence            35678899999999999999999999999999999999865554   66889999999999999988776543  35678


Q ss_pred             EECCCCc-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-c---CCC
Q 017421          196 VDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-A---HTS  270 (372)
Q Consensus       196 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~---~~~  270 (372)
                      |++..-. ....+                    ..-.++.|+.....-+.|+......+||++++.++.++- +   ..-
T Consensus      1172 W~~~s~~~~~Hsf--------------------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF--------------------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred             hccccccCccccc--------------------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence            9986521 11111                    134577887665555667666779999999998766632 1   122


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEe
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .-++..|+ |+..+++   .||.  +||++...      ... .--.-.|+|+|.-++.-+
T Consensus      1232 ~~n~a~Fs-P~D~LIl---ndGv--LWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1232 SNNLAHFS-PCDTLIL---NDGV--LWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred             hccccccC-CCcceEe---eCce--eeeeccHHHHhhhhhhe-ecccccccCCCceEEeec
Confidence            33678899 7777776   5664  89998432      111 112236899998877664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=9.4e-07  Score=83.46  Aligned_cols=176  Identities=13%  Similarity=0.090  Sum_probs=122.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...++|++++  +++|+-|+.+|.|++++.....  ..   ...|...      ..+|.++++++.||.|.|-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~---~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KT---NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--cc---ccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            3467777777  7889999999999999976542  11   2233222      56899999999999999998887765


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCC-----CCEEEEEeCCCeEEEEECCC--CeEEEEeecCCCCeEEEE
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-----~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~  276 (372)
                      .....+                 .-++.+++++|+     .+.+++|+..| +.++.-+-  .+....+....++|.++.
T Consensus       106 ~~~~df-----------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~  167 (846)
T KOG2066|consen  106 ITQYDF-----------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK  167 (846)
T ss_pred             ceeEec-----------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE
Confidence            443332                 238999999998     56788998888 76665321  111124556778999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccccc-------CC-----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLLT-------RS-----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~-----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      |.   |+++|-++.+| |+|||+.+-+       .+     ..-...+.|.++. .|+.|       |-.+|++..+.
T Consensus       168 W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-------W~d~v~i~~I~  233 (846)
T KOG2066|consen  168 WR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-------WGDSVKICSIK  233 (846)
T ss_pred             ec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-------cCCeEEEEEEe
Confidence            96   88999997777 8999986322       11     1123567787764 55566       66666666665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.64  E-value=8.7e-05  Score=63.94  Aligned_cols=191  Identities=15%  Similarity=0.106  Sum_probs=121.0

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC-CCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          129 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       129 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                      ++.|.+ ++.++++-...+.|..|+..++.....  ....    ...+.+. ++++ ++.+...+ +.++|+.+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--~~~~----~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--DLPG----PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--ESSS----EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--ecCC----CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence            578998 677777777789999999988744321  1222    6677777 5654 55555544 55669998876555


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      .......           ......+.+++.|+|++.++....        |.|..++.. ++...... .-...+.++|+
T Consensus        76 ~~~~~~~-----------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s  142 (246)
T PF08450_consen   76 ADLPDGG-----------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFS  142 (246)
T ss_dssp             EEEETTC-----------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEE
T ss_pred             eeccCCC-----------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEEC
Confidence            4432110           023478999999999977776643        567778877 55433333 34567899999


Q ss_pred             CCCCCEEE-EEeCCCeEEEEeccccc-------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          279 DESGHLIY-SGSDDNLCKVNSVLLLT-------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       279 p~~~~~l~-s~~~dg~i~vwd~~~~~-------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                       ++++.|+ +-+..+.|..+++....             ......-.+++..+|++.++..      -.+.|.+++-. |
T Consensus       143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~------~~~~I~~~~p~-G  214 (246)
T PF08450_consen  143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW------GGGRIVVFDPD-G  214 (246)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE------TTTEEEEEETT-S
T ss_pred             -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc------CCCEEEEECCC-c
Confidence             8888766 45577888888875110             1112367899999998766552      13555555555 5


Q ss_pred             eEEE
Q 017421          345 RTFY  348 (372)
Q Consensus       345 ~~~~  348 (372)
                      +.+.
T Consensus       215 ~~~~  218 (246)
T PF08450_consen  215 KLLR  218 (246)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            5443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.63  E-value=1.1e-05  Score=74.18  Aligned_cols=114  Identities=14%  Similarity=0.149  Sum_probs=81.6

Q ss_pred             ceEEEEECC-CCCEEEEE----eCCCe----EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE
Q 017421          171 TVTDTSLSP-DQRHLVYA----SMSPI----VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  241 (372)
Q Consensus       171 ~v~~~~~~~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  241 (372)
                      ...++.|+- +...+.+.    +.+|.    -.+|++..++........-             ...+.|.+++++|+...
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-------------pL~s~v~~ca~sp~E~k  273 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-------------PLPSQVICCARSPSEDK  273 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-------------ecCCcceEEecCcccce
Confidence            356667766 33444432    22333    4567776665443322221             13458999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       242 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      ++.|..||.|.+||...+.....  ...-.++.++|+ |+|.++++|+..|.+.+||+.
T Consensus       274 LvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  274 LVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEEEecCCeEEEEEcCCCeeeee--eecccceEEEEc-CCCcEEEEEcCCceEEEEEee
Confidence            99999999999999987754322  345667899999 999999999999999999985

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=2.1e-07  Score=79.49  Aligned_cols=141  Identities=16%  Similarity=0.202  Sum_probs=101.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEEC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~  198 (372)
                      .++.|.++.|+..++++..|+.+|.|.++|++..   ......  .--|.+.|+++..-. ++++|.+.+.+|.|++||+
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--EEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            5778999999999999999999999999999754   111111  224566788888777 7889999999999999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccc--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC----CCCe
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH----TSDV  272 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v  272 (372)
                      +.-++.......+             ||-+  .-.-+..++....++++++|...+||.++.+..+.+++-.    +..+
T Consensus       329 R~~K~~~~V~qYe-------------GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~  395 (425)
T KOG2695|consen  329 RATKCKKSVMQYE-------------GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDI  395 (425)
T ss_pred             hhhhcccceeeee-------------cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccc
Confidence            8766532222222             2221  1222334566778888999999999999999988887632    2345


Q ss_pred             EEEEEe
Q 017421          273 NTVCFG  278 (372)
Q Consensus       273 ~~~~~s  278 (372)
                      .+++|.
T Consensus       396 ~sv~~~  401 (425)
T KOG2695|consen  396 PSVAFD  401 (425)
T ss_pred             cceehh
Confidence            566664

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.57  E-value=7.2e-05  Score=64.73  Aligned_cols=205  Identities=12%  Similarity=0.098  Sum_probs=131.3

Q ss_pred             CCceEEEEECC-CCCEEEEEeCCC-cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCeEEEE
Q 017421          124 TSRAYVSQFSA-DGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIV  196 (372)
Q Consensus       124 ~~~v~~~~~s~-~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vw  196 (372)
                      +.+...++.+| ....++.+-.-| ...+||..++..........+ ..-.-.-.|++||++|++.-.     .|.|-||
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            34566788899 455566666655 478899999876654332222 212335689999999988633     5789999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe------------------CCCeEEEEECCC
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------SDDCIYVYDLEA  258 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------------------~dg~i~iwd~~~  258 (372)
                      |...+ ...+-.+.              .|.-....+.+.|||+.|+++-                  .+.++...|..+
T Consensus        83 d~~~~-~~ri~E~~--------------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   83 DAARG-YRRIGEFP--------------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS  147 (305)
T ss_pred             ECcCC-cEEEeEec--------------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence            99832 22222211              1222455678899997777653                  122455667777


Q ss_pred             CeEEEEee----cCCCCeEEEEEeCCCCCEEEEEeCCCe-------EEEEeccc-----------ccCCCCCeeEEEecc
Q 017421          259 NKLSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDNL-------CKVNSVLL-----------LTRSINPCNKYLFNP  316 (372)
Q Consensus       259 ~~~~~~~~----~~~~~v~~~~~sp~~~~~l~s~~~dg~-------i~vwd~~~-----------~~~~~~~v~~~~~s~  316 (372)
                      |+.+.+..    -|...|..+++. ++|..++..-..|.       |-+++...           ......-+-++++++
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~  226 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADR  226 (305)
T ss_pred             CceeeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeC
Confidence            87666533    367789999998 88876665433321       33343321           124456789999999


Q ss_pred             CCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          317 CNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +|..+++++..     -+.+.+||..+++.+...
T Consensus       227 ~g~~ia~tsPr-----Gg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  227 DGRLIAVTSPR-----GGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             CCCEEEEECCC-----CCEEEEEECCCCCEeecc
Confidence            99998877432     367788888888876654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.57  E-value=4.6e-05  Score=65.18  Aligned_cols=188  Identities=14%  Similarity=0.079  Sum_probs=115.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      ++..+++++.++.|..||..+++.+............    . ...+..+++++.++.+..+|..+|+.......... .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~  108 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-P  108 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----e-eecccccccccceeeeEecccCCcceeeeeccccc-c
Confidence            5667777789999999999999776654442221221    1 22456677777888999999999987544211110 0


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC----------eEEEEEeCCCCCE
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------VNTVCFGDESGHL  284 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~sp~~~~~  284 (372)
                      .          .. ....+....++..++.+..++.|..+|+++|+.+.........          +..-... .++ .
T Consensus       109 ~----------~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~  175 (238)
T PF13360_consen  109 P----------AG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-R  175 (238)
T ss_dssp             T----------CS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-E
T ss_pred             c----------cc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-E
Confidence            0          00 1111222223778888888999999999999998887654322          1122222 344 6


Q ss_pred             EEEEeCCCe-EEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          285 IYSGSDDNL-CKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       285 l~s~~~dg~-i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      ++.++.++. +.+ |+.+..    .....+.. ...+++..|++..      .++.+..||..+|+.+..
T Consensus       176 v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~------~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  176 VYVSSGDGRVVAV-DLATGEKLWSKPISGIYS-LPSVDGGTLYVTS------SDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEECCTSSEEEE-ETTTTEEEEEECSS-ECE-CEECCCTEEEEEE------TTTEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCeEEEE-ECCCCCEEEEecCCCccC-CceeeCCEEEEEe------CCCEEEEEECCCCCEEeE
Confidence            666667775 555 876543    11112222 1345666666663      379999999999998765

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.56  E-value=2.3e-05  Score=79.28  Aligned_cols=195  Identities=14%  Similarity=0.134  Sum_probs=124.2

Q ss_pred             CCCceEEEEECCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeE
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQ---A---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIV  193 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i  193 (372)
                      +...-..++|-.||.+||+.+-   .   ..++||+-+ |..-....   ...+--.+++|.|.|++||+...   ...|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE---PVDGLEGALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---cCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence            3445667899999999998764   2   579999965 53322211   22223457899999999998765   2345


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEee-cCCC
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRIL-AHTS  270 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~-~~~~  270 (372)
                      .+|.-+ |-....+.+...            .....|..+.|++|+..||..-.|. |.+|-..+..  ..+.+. ....
T Consensus       284 vFfErN-GLrhgeF~l~~~------------~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~  349 (928)
T PF04762_consen  284 VFFERN-GLRHGEFTLRFD------------PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSE  349 (928)
T ss_pred             EEEecC-CcEeeeEecCCC------------CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCC
Confidence            555533 222222222110            1234789999999999999877555 9999988754  223333 1233


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEecc----c------------------------cc-------------CCCCCe
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL----L------------------------LT-------------RSINPC  309 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~----~------------------------~~-------------~~~~~v  309 (372)
                      .+..+.|+|.+...|...+.+|.+..+++.    .                        +.             ....+|
T Consensus       350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v  429 (928)
T PF04762_consen  350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPV  429 (928)
T ss_pred             CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCc
Confidence            455699997777778888777777665542    0                        00             245678


Q ss_pred             eEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          310 NKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       310 ~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      ..++|++++..+++..      -|+++.+|..
T Consensus       430 ~~vaf~~~~~~~avl~------~d~~l~~~~~  455 (928)
T PF04762_consen  430 NDVAFSPSNSRFAVLT------SDGSLSIYEW  455 (928)
T ss_pred             EEEEEeCCCCeEEEEE------CCCCEEEEEe
Confidence            9999999987655553      3555666553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=2e-07  Score=55.00  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD  152 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  152 (372)
                      ..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45789999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=1.4e-05  Score=75.71  Aligned_cols=143  Identities=15%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-----CCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       133 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      ..+|.++++|+.||+|.|..+.+++......    ...++.+++++|+     .+++++|+..| +.++.-+--......
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v  154 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV  154 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence            3469999999999999999998876555432    2337999999997     56799999988 766653321111011


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC------CeEEEEEeCCC
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS------DVNTVCFGDES  281 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~sp~~  281 (372)
                       ...             ...++|.++.|.  |++||=++.+| |++||+.+++.+..+.....      ....+.|.  +
T Consensus       155 -~l~-------------~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~  215 (846)
T KOG2066|consen  155 -VLS-------------EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--D  215 (846)
T ss_pred             -eee-------------cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--C
Confidence             111             123589999997  77888877666 89999999887776653322      23467886  4


Q ss_pred             CCEEEEEeCCCeEEEEecc
Q 017421          282 GHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~  300 (372)
                      ...|+.| ...+|+|..++
T Consensus       216 ~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  216 EDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCeEEEe-cCCeEEEEEEe
Confidence            4556655 55678888877

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.49  E-value=3.7e-05  Score=64.65  Aligned_cols=35  Identities=9%  Similarity=0.054  Sum_probs=31.7

Q ss_pred             CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421          268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT  303 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~  303 (372)
                      ....|..|..| |||.+||+...+|.|.+|++..+.
T Consensus       228 ~~d~i~kmSlS-Pdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  228 EQDGIFKMSLS-PDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCCceEEEEEC-CCCCEEEEEEcCCeEEEEecCcch
Confidence            46789999999 999999999999999999998654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=3.9e-07  Score=82.49  Aligned_cols=184  Identities=16%  Similarity=0.102  Sum_probs=133.0

Q ss_pred             ccCCceeEeeeeeCCCC-------CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421          100 SAADCCHMLSRYLPVNG-------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV  172 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  172 (372)
                      .+.|+++++|...+...       .+..+.|+.+|..+.|-.+-+++++  .||-|++||.-.++.+........+. .+
T Consensus       753 ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~-a~  829 (1034)
T KOG4190|consen  753 ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEG-AG  829 (1034)
T ss_pred             ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccC-CC
Confidence            56778899999887532       4566889999999999999888775  46889999998776655433333332 23


Q ss_pred             EEEEECC--CCCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC
Q 017421          173 TDTSLSP--DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  249 (372)
Q Consensus       173 ~~~~~~~--~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg  249 (372)
                      ..+.--+  +...++.+ +...+|+++|.+........+....           .+....+.+++..|.|++++.+-.+|
T Consensus       830 ~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna-----------~~Pna~~R~iaVa~~GN~lAa~LSnG  898 (1034)
T KOG4190|consen  830 GNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA-----------PGPNALTRAIAVADKGNKLAAALSNG  898 (1034)
T ss_pred             ceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC-----------CCCchheeEEEeccCcchhhHHhcCC
Confidence            3344334  33333333 6688999999998876544443321           13445789999999999999999999


Q ss_pred             eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEE-Eec
Q 017421          250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV-NSV  299 (372)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~v-wd~  299 (372)
                      +|.+.|.++|+.+..+...+.....++-  |..+.|+....|.++.+ |..
T Consensus       899 ci~~LDaR~G~vINswrpmecdllqlaa--psdq~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  899 CIAILDARNGKVINSWRPMECDLLQLAA--PSDQALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             cEEEEecCCCceeccCCcccchhhhhcC--chhHHHHhhcccceeEeeehh
Confidence            9999999999988877766655555544  66777887778888888 764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=8.8e-06  Score=76.79  Aligned_cols=155  Identities=13%  Similarity=0.086  Sum_probs=117.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC------------CEEEEEeCCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ------------RHLVYASMSP  191 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg  191 (372)
                      ...-.+++|+|.| +||.|+. ..|.|.|..+-+.+..   ...|+..|+.+.|.|-.            -.|+++...|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs---ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS---IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhc---cccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            3446778999977 5777765 5788999887766665   55777889999998721            2467777789


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      .|.+||...+..+....                .|..++..++|-|   +. ..|++-.....+.+|+..+|+.......
T Consensus        90 rIil~d~~~~s~~~~l~----------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y  153 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLS----------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY  153 (1062)
T ss_pred             cEEEEEehhhhhhhhhc----------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence            99999998876543333                2445778888865   34 4666667778999999999999888876


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      ......|+.+.|-|.+.+..-+..|.+.+-+.
T Consensus       154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             CCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            66778889999888888887778888777664

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.47  E-value=0.00017  Score=61.33  Aligned_cols=198  Identities=13%  Similarity=0.147  Sum_probs=109.4

Q ss_pred             cccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      .+.+-...+.+++|+|+.+ ++++....+.|..++.+ ++.+... ...+. +..-++++..++.++++.-.++.+.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-PLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-E-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-eCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            4455566799999999755 56667777888888864 5555543 33333 3578899987887777665689999998


Q ss_pred             CCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEe--e-----
Q 017421          198 VGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRI--L-----  266 (372)
Q Consensus       198 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~---~~~~~~~--~-----  266 (372)
                      +..... ........      +.......+...+-.++|+|.++.|+.+-...-..+|.++.   ...+...  .     
T Consensus        93 ~~~~~~~~~~~~~~~------~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   93 IDDDTTSLDRADVQK------ISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             E----TT--EEEEEE------EE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             EeccccccchhhceE------EecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence            844321 11110000      00000012345789999999887777776665566666543   2121111  1     


Q ss_pred             -cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------ccc-------CCCCCeeEEEeccCCCeEEEEe
Q 017421          267 -AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLT-------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       267 -~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~-------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                       .....+.+++++|.++++++.......|..+|..       .+.       ..-...-.++|.++|++.+++-
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence             2345688999998888888888888888888854       111       1224578899999998877773

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.46  E-value=3.5e-05  Score=76.38  Aligned_cols=193  Identities=16%  Similarity=0.066  Sum_probs=124.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...|.++.|..+.+.++.+...|.|.+-|.++.....    .......|.+++|+||+..++..+..+++.+..- .-.+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~  142 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEP  142 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc
Confidence            3689999999999999999999999999988763322    2233346999999999999999998888766542 1111


Q ss_pred             eeecce-------------eecccccceeccCC----------------CCccccEEEEEEcCCCCEEEEE-----eCCC
Q 017421          204 ESLANV-------------TEIHDGLDFSAADD----------------GGYSFGIFSLKFSTDGRELVAG-----SSDD  249 (372)
Q Consensus       204 ~~~~~~-------------~~~~~~~~~~~~~~----------------~~h~~~i~~~~~sp~~~~l~s~-----s~dg  249 (372)
                      +....+             .-......|.+...                ....+.=+.|.|--||.++++.     ....
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            111110             00000112221110                0011223468999999999873     2237


Q ss_pred             eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccccc---------CCCCCeeEEEeccC
Q 017421          250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLLLT---------RSINPCNKYLFNPC  317 (372)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~~~---------~~~~~v~~~~~s~~  317 (372)
                      .|++||-+ |..-.+-....+--.+++|- |.|.++++..   .|+.|.+|..+-+.         .....|..++|+.+
T Consensus       223 kirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  223 KIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             eEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence            89999987 44322222223344689998 8999998864   45679999865221         22234899999999


Q ss_pred             CCeEEE
Q 017421          318 NKYLII  323 (372)
Q Consensus       318 g~~l~~  323 (372)
                      +..|++
T Consensus       301 sdiLAv  306 (1265)
T KOG1920|consen  301 SDILAV  306 (1265)
T ss_pred             CCceee
Confidence            999987

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.46  E-value=7.6e-06  Score=76.49  Aligned_cols=201  Identities=15%  Similarity=0.131  Sum_probs=130.7

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ++..|.--+++..+++++.|+.-|.+++|+-..+..... . ..+....+..+..+++..++|.|+..|.|.++.+..+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~-~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-K-NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-c-ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            455666677888899999999999999999776633221 1 22233457778899999999999999999999987744


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEeecCCCCeEEEEEe
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s  278 (372)
                      .......          .+.+..|...|++++|++++..+++|...|+|..-.+.+..    ..+.+..-.+.|..+.+.
T Consensus       110 p~~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  110 PRDLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CCcceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            3222221          12223477899999999999999999999999888887621    222333345677677664


Q ss_pred             CCCCCEEEEEeCCCeEEEEecc--cc----cCCCC--CeeEEEeccC----C-CeEEEEeeeeEEEeeceEEEeecccce
Q 017421          279 DESGHLIYSGSDDNLCKVNSVL--LL----TRSIN--PCNKYLFNPC----N-KYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~--~~----~~~~~--~v~~~~~s~~----g-~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                        ++.+|++.....  .+++++  +.    +....  .-...+|-|.    . -.|+++        -+..++|.+.-..
T Consensus       180 --q~~LLVStl~r~--~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca--------RPG~RlWead~~G  247 (726)
T KOG3621|consen  180 --QSYLLVSTLTRC--ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA--------RPGLRLWEADFAG  247 (726)
T ss_pred             --cceehHhhhhhh--heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe--------cCCCceEEeecce
Confidence              555555543332  233433  11    11111  2355667664    2 234444        5667888886544


Q ss_pred             EE
Q 017421          346 TF  347 (372)
Q Consensus       346 ~~  347 (372)
                      ++
T Consensus       248 ~V  249 (726)
T KOG3621|consen  248 EV  249 (726)
T ss_pred             eE
Confidence            43

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.46  E-value=0.00011  Score=63.57  Aligned_cols=176  Identities=18%  Similarity=0.126  Sum_probs=110.9

Q ss_pred             EEECCCCCEEEEEe-----CCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEEEEeC--------------
Q 017421          130 SQFSADGSLFVAGF-----QASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--------------  189 (372)
Q Consensus       130 ~~~s~~~~~l~~~~-----~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------  189 (372)
                      -.||+||++|.+.-     ..|.|-|||... ...+.+   ...+.-....+.+.||++.|+++..              
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E---~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN  132 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE---FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN  132 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE---ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence            46999999998853     357899999983 333333   3344445778899999988887632              


Q ss_pred             ----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-------EEEEECCC
Q 017421          190 ----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------IYVYDLEA  258 (372)
Q Consensus       190 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-------i~iwd~~~  258 (372)
                          +..+...|..+|+......+...            -|...|..+++.++|..++..-..|.       |-+++.. 
T Consensus       133 l~tM~psL~~ld~~sG~ll~q~~Lp~~------------~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g-  199 (305)
T PF07433_consen  133 LDTMQPSLVYLDARSGALLEQVELPPD------------LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG-  199 (305)
T ss_pred             hhhcCCceEEEecCCCceeeeeecCcc------------ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC-
Confidence                12344445555554433332211            36678999999999976665544332       3444333 


Q ss_pred             CeEEEEee-------cCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEE
Q 017421          259 NKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       259 ~~~~~~~~-------~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~  324 (372)
                       +.+..+.       .-.+.+-+|+++ .++.++++.+ ..+.+.+||..+..    ..-..+..++-.+++ +++++
T Consensus       200 -~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ss  274 (305)
T PF07433_consen  200 -GALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSS  274 (305)
T ss_pred             -CcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeC
Confidence             2222222       234688999999 8888776555 67889999987543    223345666666666 55544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.45  E-value=1.6e-06  Score=71.44  Aligned_cols=142  Identities=16%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecc-eeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-----CCeEEE
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLAN-VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYV  253 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-----dg~i~i  253 (372)
                      -++.++++..||.+.+.+.+.-  ..... ....             |. .-.+.+....++.+.++.-     -+..+.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~-------------~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a  163 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSI-------------HS-GSASRKICRHGNSILSGGCGNWNAQDNFYA  163 (319)
T ss_pred             cCCceEecCCCceEEEEechHH--Hhhhhhcccc-------------cc-cccccceeecccEEecCCcceEeeccceee
Confidence            4567999999999999997751  11111 1110             00 1111222223444443321     133556


Q ss_pred             EECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccC-CCeEEEEe
Q 017421          254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPC-NKYLIIYL  325 (372)
Q Consensus       254 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~-g~~l~~~~  325 (372)
                      |+++..+.+..-......|++++-+|...+++++|+.||.+-+||.+.       +..|..+++.+-|+|. +..|++++
T Consensus       164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence            666543322221222345999999966777888899999999999983       4589999999999996 55666665


Q ss_pred             eeeEEEeeceEEEeeccc
Q 017421          326 ILVISIYSPNILLDNYFL  343 (372)
Q Consensus       326 ~~~~~~~d~~i~lw~~~~  343 (372)
                            .||.+-.||..+
T Consensus       244 ------edGslw~wdas~  255 (319)
T KOG4714|consen  244 ------EDGSLWHWDAST  255 (319)
T ss_pred             ------CCCcEEEEcCCC
Confidence                  577777777764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.44  E-value=1.9e-06  Score=72.78  Aligned_cols=174  Identities=16%  Similarity=0.214  Sum_probs=114.8

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-----cceEEEEECCC-CCEEEEEeCCCeEE
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPD-QRHLVYASMSPIVH  194 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~dg~i~  194 (372)
                      ..|+-.++++.|+.|...++++. |-.|-+|+++.........-.++|.     .-|++..|+|. ...+...+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            56888999999999998888764 5789999987654333333344443     35889999994 45667778899999


Q ss_pred             EEECCCCce-eeecceee-cccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCC--
Q 017421          195 IVDVGSGTM-ESLANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT--  269 (372)
Q Consensus       195 vwd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~--  269 (372)
                      +-|++.... .....+.. ...+.....  -.+-...|..+.|+++|++|++-+. -+|++||++.. .++.++.-|.  
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~f--f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l  324 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDF--FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL  324 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchh--HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence            999985432 11111100 000000000  0012347888999999999887654 78999999864 4667765442  


Q ss_pred             ----------CCe---EEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          270 ----------SDV---NTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       270 ----------~~v---~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                                ..|   ..+.|+ .+.+.+++|+..+..-+|-.
T Consensus       325 ~~~l~d~YEnDaifdkFeisfS-gd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFS-GDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEec-CCcccccccccccceeeecc
Confidence                      233   347788 88888889988777777653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=7.5e-05  Score=71.57  Aligned_cols=195  Identities=13%  Similarity=0.059  Sum_probs=118.1

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcc-eEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcee
Q 017421          131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTME  204 (372)
Q Consensus       131 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~  204 (372)
                      +|++.+..++.|+.+|.|.+++-.-. .+..   ...+... |+.+....+..+|++.+.|+     .+++|+++.-+..
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~---fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRG---FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccce-eeeh---heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            57888999999999998887764321 1122   3333334 44444444446777776654     4899998754311


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEeecCCCCeEEEEEeCC
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE----ANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      ........+   ...+..-+....++.+++.+.+-+.+|+|-.+|.|..+.-+    .+....-......+|+.+.+. .
T Consensus       106 ~sP~c~~~~---ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-~  181 (933)
T KOG2114|consen  106 NSPQCLYEH---RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-S  181 (933)
T ss_pred             CCcceeeee---eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-c
Confidence            100000000   00010001234589999999998999999999999988532    122212222345699999998 7


Q ss_pred             CCCEEEEEeCCCeEEEEecc--c-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          281 SGHLIYSGSDDNLCKVNSVL--L-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       281 ~~~~l~s~~~dg~i~vwd~~--~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      ++..++-+..-..|.+|.+.  +     +..+..++.+-.|++....++++.+..+..||
T Consensus       182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~  241 (933)
T KOG2114|consen  182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD  241 (933)
T ss_pred             CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence            77662222234568888875  2     33566777888888876657777666666665

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.42  E-value=5.8e-06  Score=76.04  Aligned_cols=118  Identities=17%  Similarity=0.175  Sum_probs=82.5

Q ss_pred             ceEEEEECC-CCCEEEEE----eCCCc----EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          126 RAYVSQFSA-DGSLFVAG----FQASQ----IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       126 ~v~~~~~s~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...++.||. +...+.+.    +.+|.    -.+|+...++.-......-..+..|.+++++|+...++.|+.||.|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            345566766 33344432    22332    3567766553323333334566689999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL  261 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  261 (372)
                      |...+.......                  .-.++.++|+|+|..+++|+..|.+.+||+.-...
T Consensus       287 D~~~~~t~~~ka------------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  287 DTTRGVTLLAKA------------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             EcCCCeeeeeee------------------cccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            998775432211                  12678899999999999999999999999875543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.41  E-value=6.9e-06  Score=78.81  Aligned_cols=175  Identities=14%  Similarity=0.045  Sum_probs=124.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      +..++.|+--..+..+|+.+....+......   ..|+-+.  .+++.+.+|...|+|.+-|.++.+.+....       
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-------  214 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-------  214 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccC---CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-------
Confidence            3445566665678888988775544322211   1244444  367899999999999999999887654443       


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEE
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY  286 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~  286 (372)
                               .|++.|..+..  .|+.|++++.         |.-|+|||++.-+.+..+.-+-++ .-+.|+|.-...++
T Consensus       215 ---------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~  282 (1118)
T KOG1275|consen  215 ---------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA  282 (1118)
T ss_pred             ---------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence                     46677876654  5888888764         456899999987766555544333 56788866778899


Q ss_pred             EEeCCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee
Q 017421          287 SGSDDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN  340 (372)
Q Consensus       287 s~~~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~  340 (372)
                      +++..|...+-|..++.          .....+..++++++|+.|+.+.      .++.|.+|-
T Consensus       283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd------~~g~v~~wa  340 (1118)
T KOG1275|consen  283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD------HEGHVNLWA  340 (1118)
T ss_pred             EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec------ccCcEeeec
Confidence            99999999999954332          3345589999999999999884      478888886

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.39  E-value=4.2e-05  Score=69.00  Aligned_cols=169  Identities=15%  Similarity=0.169  Sum_probs=115.9

Q ss_pred             EEEECCCCCEEEEEe-----------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe--CCCeEEE
Q 017421          129 VSQFSADGSLFVAGF-----------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--MSPIVHI  195 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~v  195 (372)
                      .+.|++.|++|++--           ....+.++++... .+..   .....++|...+|.|.++.+++.+  .+-.+.+
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V---~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~  302 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPV---EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV  302 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccce---eccccccceeeeecccCCceeEEecccccceee
Confidence            457888888876421           1246788888743 2222   224456899999999888876654  5778899


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEE-EeecCCCC
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSL-RILAHTSD  271 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~~~~~  271 (372)
                      +|++.. ..  ...++                ..-+.+.|+|.+++++.++-|   |.+.+||......+. .+.+.  .
T Consensus       303 ~~lr~N-l~--~~~Pe----------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n  361 (561)
T COG5354         303 FDLRGN-LR--FYFPE----------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--N  361 (561)
T ss_pred             cccccc-eE--EecCC----------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--C
Confidence            999876 21  11111                245668899999999987765   679999988665443 55543  3


Q ss_pred             eEEEEEeCCCCCEEEEEe------CCCeEEEEecccccCCCCCeeEEEeccCCCeEEEEe
Q 017421          272 VNTVCFGDESGHLIYSGS------DDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      ..-+.|+ |+++++.+..      .|..|.|||+.--..  ...+.+.|.|.|++..+.+
T Consensus       362 ~s~~~ws-pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--fel~~~~W~p~~~~~ttsS  418 (561)
T COG5354         362 TSYCDWS-PDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--FELTNITWDPSGQYVTTSS  418 (561)
T ss_pred             ceEeecc-CCceEEEecCCCcccccCcceEEEEecCchh--hhhhhccccCCcccceeec
Confidence            3456799 9999988763      478899999852221  2678889999888876653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.30  E-value=4.5e-05  Score=70.45  Aligned_cols=185  Identities=18%  Similarity=0.186  Sum_probs=115.3

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEe---CC-CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC-
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGF---QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP-  191 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg-  191 (372)
                      ..+..-...+..-+|+|+++.++...   .. ..+.++++.++....... ..+   .-...+|+|||+.|+.... || 
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g---~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNG---NNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCC---ccCCccCCCCCCEEEEEECCCCC
Confidence            33444456677788999998876542   22 358999999885443322 222   3456789999998876644 55 


Q ss_pred             -eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEeec
Q 017421          192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILA  267 (372)
Q Consensus       192 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~  267 (372)
                       .|+++|+.++....+....                 +.-..-.|+|||+.|+..+.. |  .|.++|.+.... ..+..
T Consensus       262 ~~iy~~dl~~~~~~~Lt~~~-----------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~  323 (425)
T COG0823         262 PDIYLMDLDGKNLPRLTNGF-----------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF  323 (425)
T ss_pred             ccEEEEcCCCCcceecccCC-----------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec
Confidence             4777788776633322111                 122356799999999876653 3  377778776654 33433


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEeC-CCe--EEEEeccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421          268 HTSDVNTVCFGDESGHLIYSGSD-DNL--CKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~~l~s~~~-dg~--i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      ....-....|+ |+|++|+..+. +|.  |.+.|+....     ..........|.|+|+.+...+
T Consensus       324 ~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         324 SGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             cCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence            33333377899 99999887764 344  4555543222     3334445678889998887664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.29  E-value=0.00023  Score=65.48  Aligned_cols=196  Identities=10%  Similarity=0.007  Sum_probs=111.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc--ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  213 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  213 (372)
                      +..++.++.++.|..||..+++.+.+.........  ...+...  .+..++.+..++.+..+|.++|+...........
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            45677778889999999998866554322111000  0001111  1246777888899999999998764322211000


Q ss_pred             cccceeccCCCCccccE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 017421          214 DGLDFSAADDGGYSFGI-FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN  292 (372)
Q Consensus       214 ~~~~~~~~~~~~h~~~i-~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg  292 (372)
                      .....      .....+ ....+  .+..+++++.+|.+..||.++++.+.....  .....+..   .+..++.++.+|
T Consensus       223 g~~~~------~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~---~~~~vyv~~~~G  289 (377)
T TIGR03300       223 GRTEL------ERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV---DDNRLYVTDADG  289 (377)
T ss_pred             CCCch------hhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE---eCCEEEEECCCC
Confidence            00000      000000 01111  245777788899999999999987766542  11222223   356777778899


Q ss_pred             eEEEEecccccC---C----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          293 LCKVNSVLLLTR---S----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       293 ~i~vwd~~~~~~---~----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      .|..+|..+.+.   .    .....+...  .+..++++.      .++.+.++|..+|+.+..+..+.
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~------~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD------FEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe------CCCEEEEEECCCCCEEEEEEcCC
Confidence            999999864321   1    111122222  244555443      47889999999999888776543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.28  E-value=0.00049  Score=61.67  Aligned_cols=117  Identities=14%  Similarity=0.160  Sum_probs=77.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe----------CCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDD  249 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s----------~dg  249 (372)
                      +++++..... |.|.+.|+...............    +....++-....+.-++++|+++.+++..          ..+
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~----~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~  279 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT----EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR  279 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeecc----ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence            7777666655 99999997655433222111100    00000001122344599999998887742          124


Q ss_pred             eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC-EEEEEe-CCCeEEEEeccccc
Q 017421          250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGS-DDNLCKVNSVLLLT  303 (372)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~s~~-~dg~i~vwd~~~~~  303 (372)
                      .|.++|..+++.+..+.. ...+..++++ +|++ +|++.+ .++.|.++|..+.+
T Consensus       280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS-~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       280 FLFVVDAKTGKRLRKIEL-GHEIDSINVS-QDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             EEEEEECCCCeEEEEEeC-CCceeeEEEC-CCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            799999999999988874 4578999999 9998 777666 57889999987543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.3e-05  Score=65.61  Aligned_cols=80  Identities=18%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             cccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE-EEEEeCCCeEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-LVYASMSPIVHIV  196 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vw  196 (372)
                      .+..|...|..++|||..+ ++..++.+..|+|.|+++...+.....   + ..+++++|.-|... |..|...|.|.+|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---Y-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---c-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            4567788999999999766 788899999999999998755554332   2 36999999987654 5666679999999


Q ss_pred             ECCCCc
Q 017421          197 DVGSGT  202 (372)
Q Consensus       197 d~~~~~  202 (372)
                      |++..+
T Consensus       264 D~R~~~  269 (463)
T KOG1645|consen  264 DMRQPE  269 (463)
T ss_pred             EccCCC
Confidence            998765

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=1.5e-06  Score=82.93  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=119.6

Q ss_pred             cccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      +..+....++++|+-+.++|+.|+..|.|+++++.+|......+                .|.++|+.+.-+.||..+++
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------------cH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------------CHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc----------------ccccccccccccCCcceeee
Confidence            45666789999999999999999999999999999997655444                68889999998889988876


Q ss_pred             EeCCC--eEEEEECCC-CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------CCCCCeeE
Q 017421          245 GSSDD--CIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------RSINPCNK  311 (372)
Q Consensus       245 ~s~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~v~~  311 (372)
                      .+.-.  -.-+|++.+ +...+++.    .-.++.|+ ..-..-+.|.......+||+.+..          .....-+.
T Consensus      1161 sss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFs-n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFS-NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred             eccccCchHHHhccccccCcccccc----ccceeehh-hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence            65433  367899864 34444444    34678898 655555666666778999998532          11222366


Q ss_pred             EEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE-EEeeecccC
Q 017421          312 YLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI-LFSGYLHND  363 (372)
Q Consensus       312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~-~~~~~~~~~  363 (372)
                      ..|+|+..++.         |||.  |||+...+.+..|.-.. ..+|.+|-.
T Consensus      1236 a~FsP~D~LIl---------ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~ 1277 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---------NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPS 1277 (1516)
T ss_pred             cccCCCcceEe---------eCce--eeeeccHHHHhhhhhheecccccccCC
Confidence            78999987665         5664  88888877666654443 334555543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.22  E-value=3.3e-05  Score=74.31  Aligned_cols=150  Identities=12%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---------CCeEEEE
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIV  196 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vw  196 (372)
                      .|.-|+.  +++++.+|...|+|.+-|..+.+.+.+   ...|.+.|.++.  -.|+.|++++.         |..|+||
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht---~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHT---FDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeee---eeccccceeeee--ccCCeEEEeecccccccccccchhhhh
Confidence            3554444  588999999999999999998866665   667887776654  46889988875         5568999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEEC---CCCe-EEEEeecCCCC
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDL---EANK-LSLRILAHTSD  271 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~---~~~~-~~~~~~~~~~~  271 (372)
                      |++.-+.+.-..+..                 ...-+.|+|. ...+++.+..|...+-|.   .+.. .+..+......
T Consensus       252 DLRmmral~PI~~~~-----------------~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~  314 (1118)
T KOG1275|consen  252 DLRMMRALSPIQFPY-----------------GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG  314 (1118)
T ss_pred             hhhhhhccCCccccc-----------------CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc
Confidence            998876543333221                 2234667775 356777888899999883   3321 22333334456


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +..++++ ++++.++.|..+|.|.+|--+
T Consensus       315 i~~fDiS-sn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  315 ISAFDIS-SNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ceeEEec-CCCceEEEecccCcEeeecCC
Confidence            9999999 999999999999999999743

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.19  E-value=0.00027  Score=65.62  Aligned_cols=195  Identities=15%  Similarity=0.100  Sum_probs=103.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE-ECCCCc
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV-DVGSGT  202 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~  202 (372)
                      ...+..+.++|+|+++++ +.+|.-.||.....+...        .+.-....|.+.+ .+|+-...+.|.++ +++...
T Consensus        32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred             CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--------cCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence            334678999999999988 456888888854442211        1135678899844 46666668889986 332221


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  282 (372)
                      .. .....                 ..+..|-.   |.+|+..+. +.|.+||+.+++.+..+...  +|..+.|+ ++|
T Consensus       102 ~k-~i~~~-----------------~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~g  156 (443)
T PF04053_consen  102 VK-SIKLP-----------------FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWS-DDG  156 (443)
T ss_dssp             T------S-----------------S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE--TTS
T ss_pred             ce-EEcCC-----------------cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEE-CCC
Confidence            10 11110                 02333322   777777664 48999999999999998743  48999999 999


Q ss_pred             CEEEEEeCCCeEEEEecccc--------------c---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          283 HLIYSGSDDNLCKVNSVLLL--------------T---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~~~--------------~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      .+++..+.+ .+.+++...-              .   .....|.+.+|..+ -++.+.        ...++.+--....
T Consensus       157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT--------~~~lkYl~~Ge~~  226 (443)
T PF04053_consen  157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT--------SNHLKYLVNGETG  226 (443)
T ss_dssp             SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---------TTEEEEEETTEEE
T ss_pred             CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc--------CCeEEEEEcCCcc
Confidence            999988755 5666654321              1   22567788888776 333333        1234442112223


Q ss_pred             EEEEEeeeEEEeeecccC
Q 017421          346 TFYSFMVHILFSGYLHND  363 (372)
Q Consensus       346 ~~~~~~~h~~~~~~~~~~  363 (372)
                      .+..+.-.+.+.||+-+.
T Consensus       227 ~i~~ld~~~yllgy~~~~  244 (443)
T PF04053_consen  227 IIAHLDKPLYLLGYLPKE  244 (443)
T ss_dssp             EEEE-SS--EEEEEETTT
T ss_pred             eEEEcCCceEEEEEEccC
Confidence            455666666777777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=0.00032  Score=66.68  Aligned_cols=213  Identities=10%  Similarity=-0.040  Sum_probs=132.8

Q ss_pred             CceeEeeeeeCCCCCccccCCCCceEEEEECCCC------------CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc
Q 017421          103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG------------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW  170 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  170 (372)
                      ...+.+.+....+....+..|+..|+.+.|.|..            -+||++...|.|.+||...+.....   +..+..
T Consensus        34 hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~---l~~~~~  110 (1062)
T KOG1912|consen   34 HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW---LSHSND  110 (1062)
T ss_pred             CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh---hcCCCc
Confidence            3445566666666677788899999999998742            2467788889999999987643333   556677


Q ss_pred             ceEEEEECC---CC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEE
Q 017421          171 TVTDTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAG  245 (372)
Q Consensus       171 ~v~~~~~~~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~  245 (372)
                      ++..+.|-+   +. ..|+.-.....+.+|+..+|+......  ..              .....|+.+.| |.+.+...
T Consensus       111 ~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~--ys--------------~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen  111 SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD--YS--------------HEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--cC--------------CcceeeeeeCCCCcceEEEE
Confidence            889999877   33 456666777899999999998633322  11              12567788888 55666666


Q ss_pred             eCCCeEEEEECCC-------CeEEEEeecCCC------------C-------------eEEEEEeCCCCCEEEEEeCCCe
Q 017421          246 SSDDCIYVYDLEA-------NKLSLRILAHTS------------D-------------VNTVCFGDESGHLIYSGSDDNL  293 (372)
Q Consensus       246 s~dg~i~iwd~~~-------~~~~~~~~~~~~------------~-------------v~~~~~sp~~~~~l~s~~~dg~  293 (372)
                      +..|.+.+-+.-.       ++..+.-..|..            .             .-.++|+ |.-+.++-......
T Consensus       175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~-p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS-PHWRNILFITFPRE  253 (1062)
T ss_pred             ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC-hhhhceEEEEeccc
Confidence            6667666655421       222222222221            0             1125677 44443444446778


Q ss_pred             EEEEeccccc------CCCCCeeEEEeccCCC--eEEEEeeeeEEEeeceEEEeec
Q 017421          294 CKVNSVLLLT------RSINPCNKYLFNPCNK--YLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       294 i~vwd~~~~~------~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +.++|++...      -..+.+.-+.|-|+++  .|++..      -||.+.+|--
T Consensus       254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH------~nG~ltirvr  303 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLH------SNGRLTIRVR  303 (1062)
T ss_pred             eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEe------cCCeEEEEEe
Confidence            9999987321      2333444566667754  455553      3677777743

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.16  E-value=0.00051  Score=63.27  Aligned_cols=140  Identities=13%  Similarity=0.058  Sum_probs=90.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      +..+++++.++.|..+|..+++.+..........   .....  ++..+++++.++.+..+|..+|+.........    
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence            6678888889999999999887665433222211   11222  46778888899999999999998754332211    


Q ss_pred             cceeccCCCCccccEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe-----EEEEEeCCCCCEEEEEe
Q 017421          216 LDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHLIYSGS  289 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~-~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~~l~s~~  289 (372)
                                   .+.+ ...  .+..++.++.++.+..||.++++.+..+......+     .+....  + ..++.+.
T Consensus       136 -------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~  197 (377)
T TIGR03300       136 -------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGF  197 (377)
T ss_pred             -------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEEC
Confidence                         1111 111  24567777889999999999998877765332211     112222  2 3667777


Q ss_pred             CCCeEEEEecccc
Q 017421          290 DDNLCKVNSVLLL  302 (372)
Q Consensus       290 ~dg~i~vwd~~~~  302 (372)
                      .++.+..+|+++.
T Consensus       198 ~~g~v~ald~~tG  210 (377)
T TIGR03300       198 AGGKLVALDLQTG  210 (377)
T ss_pred             CCCEEEEEEccCC
Confidence            8888888887643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.06  E-value=8.8e-07  Score=81.66  Aligned_cols=166  Identities=13%  Similarity=0.116  Sum_probs=109.1

Q ss_pred             CccccCCCCceEEEEECC-CCCEEEEEe----CCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421          117 PWPVDQTTSRAYVSQFSA-DGSLFVAGF----QASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      .....+|....++++|++ |.+.||+|-    .|..+.|||+.+.-  +........+......+++|..+.+++++|..
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence            344567888999999999 667788773    35689999998762  11111111122334568888888899999988


Q ss_pred             CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCe-EEEEee
Q 017421          190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD-LEANK-LSLRIL  266 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd-~~~~~-~~~~~~  266 (372)
                      ...+.++|++....... .+                .+..+..+..+| .+.++++-. ||.|.+|| .+.-+ ++..+.
T Consensus       175 sr~~~ifdlRqs~~~~~-sv----------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~  236 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDSVS-SV----------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL  236 (783)
T ss_pred             cchhhhhhhhhhhhhhh-hh----------------hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh
Confidence            88999999984332111 11                111455667777 667777665 99999999 33322 222222


Q ss_pred             cCC----CCeEEEEEeCCCCCEEEEEeC-CCeEEEEecc
Q 017421          267 AHT----SDVNTVCFGDESGHLIYSGSD-DNLCKVNSVL  300 (372)
Q Consensus       267 ~~~----~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~  300 (372)
                      ..+    ..+..++|+|....++++... .++|+++|+.
T Consensus       237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            222    248999999655556666665 4789999986

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.05  E-value=2e-06  Score=79.35  Aligned_cols=182  Identities=15%  Similarity=0.111  Sum_probs=120.1

Q ss_pred             CCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeC----CCeEEEE
Q 017421          124 TSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASM----SPIVHIV  196 (372)
Q Consensus       124 ~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~vw  196 (372)
                      ...+.|+++..+  ...+++|..+|.|-+-.+....-- ......++..+.++++|++ |.++||.|-.    |..+.+|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            456777776554  346788999999999887654222 1223456667899999999 6677777743    5679999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      |+.++-..+       .+...|...    ......+++|..+.+++++|.....+.++|++.... ....-.+..+..+.
T Consensus       135 di~s~ltvP-------ke~~~fs~~----~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~t  202 (783)
T KOG1008|consen  135 DINSLLTVP-------KESPLFSSS----TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGIT  202 (783)
T ss_pred             ecccccCCC-------ccccccccc----cccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccce
Confidence            998763211       111122221    122456889988889999999888999999984321 11111234566777


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEe-ccccc-------C----CCCCeeEEEeccCCC
Q 017421          277 FGDESGHLIYSGSDDNLCKVNS-VLLLT-------R----SINPCNKYLFNPCNK  319 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd-~~~~~-------~----~~~~v~~~~~s~~g~  319 (372)
                      +.|-.+.++++-. ||.|.+|| .+..+       .    ....+..++|+|...
T Consensus       203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt  256 (783)
T KOG1008|consen  203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT  256 (783)
T ss_pred             ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence            8844788888765 99999999 43221       1    123489999999743

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.03  E-value=0.00077  Score=67.29  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=95.7

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  248 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d  248 (372)
                      ...|.++.|..+...++.+...|.|.+.|.++.........                 ...|.+++|+||+..++..+..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v-----------------d~GI~aaswS~Dee~l~liT~~  130 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV-----------------DNGISAASWSPDEELLALITGR  130 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec-----------------cCceEEEeecCCCcEEEEEeCC
Confidence            35799999999999999999999999998887765333321                 2379999999999999988887


Q ss_pred             CeEEEEEC----CC-------------------CeEEEEeecC---------------------CCCeEEEEEeCCCCCE
Q 017421          249 DCIYVYDL----EA-------------------NKLSLRILAH---------------------TSDVNTVCFGDESGHL  284 (372)
Q Consensus       249 g~i~iwd~----~~-------------------~~~~~~~~~~---------------------~~~v~~~~~sp~~~~~  284 (372)
                      +++.+-+-    -.                   |+....+.+.                     .+.-+.+.|- .||.+
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~  209 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEY  209 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcE
Confidence            77665432    00                   1100111110                     1122458998 99999


Q ss_pred             EEEEe----CC-CeEEEEecc-ccc----CCCCCeeEEEeccCCCeEEEE
Q 017421          285 IYSGS----DD-NLCKVNSVL-LLT----RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       285 l~s~~----~d-g~i~vwd~~-~~~----~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +|+..    .+ ..|+|||.. .+.    .....-.+++|-|.|..+++-
T Consensus       210 fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~i  259 (1265)
T KOG1920|consen  210 FAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAI  259 (1265)
T ss_pred             EEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeee
Confidence            99842    23 789999987 111    223334778999999998875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.99  E-value=0.00014  Score=52.80  Aligned_cols=82  Identities=15%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             eEEEEEeCCCC---CEEEEEeCCCeEEEEeccccc---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          272 VNTVCFGDESG---HLIYSGSDDNLCKVNSVLLLT---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       272 v~~~~~sp~~~---~~l~s~~~dg~i~vwd~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |+++++.+-++   +.|++|+.|..||+|+-..+.   .....|++++-...+++.++...+++.+|+...++|.+.+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~   81 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN   81 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC
Confidence            66777764333   589999999999999876432   456788888888888888888899999999999999999988


Q ss_pred             EEEEEeee
Q 017421          346 TFYSFMVH  353 (372)
Q Consensus       346 ~~~~~~~h  353 (372)
                      .+.++...
T Consensus        82 ~~~~~~~~   89 (111)
T PF14783_consen   82 QVTSMAFY   89 (111)
T ss_pred             CeEEEEEE
Confidence            77666554

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.96  E-value=0.00079  Score=63.88  Aligned_cols=178  Identities=11%  Similarity=-0.012  Sum_probs=108.3

Q ss_pred             ECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC----eEEEEECCCCceeee
Q 017421          132 FSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMESL  206 (372)
Q Consensus       132 ~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~  206 (372)
                      ++|||+.+. +.-..+.+.+.|.++.+...+.... +   ....+.++|+++++++.+.+.    .+...+.........
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-g---npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-G---NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-C---CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence            455666543 2233456777888776444443322 2   456789999999998886422    233332222111000


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEeecCCCCeEEEEEeCCC
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRILAHTSDVNTVCFGDES  281 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~sp~~  281 (372)
                      +...                  .+  ..+.++|++...  .++.|.+.|.++     ...+..+. -......+.++ ||
T Consensus       276 fni~------------------~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vS-PD  331 (635)
T PRK02888        276 FNIA------------------RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTS-PD  331 (635)
T ss_pred             EchH------------------HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEEC-CC
Confidence            0000                  00  133457876665  367899999998     34555554 44567899999 99


Q ss_pred             CCEEEEEe-CCCeEEEEecccccC-----------------CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          282 GHLIYSGS-DDNLCKVNSVLLLTR-----------------SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       282 ~~~l~s~~-~dg~i~vwd~~~~~~-----------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      |+++++++ .+.++.|+|+.+++.                 ........+|.++|....+.     - -|++|-.||+..
T Consensus       332 GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytsl-----f-~dsqv~kwn~~~  405 (635)
T PRK02888        332 GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTL-----F-LDSQIVKWNIEA  405 (635)
T ss_pred             CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeE-----e-ecceeEEEehHH
Confidence            99887765 589999999985431                 12233567888888744333     2 488999999877

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0014  Score=63.24  Aligned_cols=168  Identities=11%  Similarity=0.084  Sum_probs=104.4

Q ss_pred             cccCCCCc-eEEEEECCCCCEEEEEeCCC-----cEEEEeCCCC------eEEE--Eee--ecccCCcceEEEEECCCCC
Q 017421          119 PVDQTTSR-AYVSQFSADGSLFVAGFQAS-----QIRIYDVERG------WKIQ--KDI--LAKSLRWTVTDTSLSPDQR  182 (372)
Q Consensus       119 ~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~------~~~~--~~~--~~~~~~~~v~~~~~~~~~~  182 (372)
                      -+..+... |..+-...+..+|++.+.|+     .|+||+++.-      .++.  ...  ..+....++.+++.+.+-+
T Consensus        59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~  138 (933)
T KOG2114|consen   59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK  138 (933)
T ss_pred             hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc
Confidence            34444444 44444444446777766554     4899998743      1121  111  1122356788999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-
Q 017421          183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-  261 (372)
Q Consensus       183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~-  261 (372)
                      .+|+|-.+|.|..+.=+--+-+.. +....+           ....+|+.+.+..+++.++....-..|.+|.+....+ 
T Consensus       139 ~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~-----------~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~  206 (933)
T KOG2114|consen  139 TIVCGFTNGLVICYKGDILRDRGS-RQDYSH-----------RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS  206 (933)
T ss_pred             EEEEEecCcEEEEEcCcchhcccc-ceeeec-----------cCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc
Confidence            999999999998885321111111 111111           1235899999999887733333346799999984442 


Q ss_pred             EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      ...+..|+.++.|..++++.+++++++  +..+.+||..
T Consensus       207 ~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd  243 (933)
T KOG2114|consen  207 LKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSD  243 (933)
T ss_pred             eeeeccCCccceeeecCCCCccEEEec--CceEEEEcCC
Confidence            444777888999999985555455544  4569999876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.93  E-value=0.0057  Score=51.12  Aligned_cols=137  Identities=16%  Similarity=0.124  Sum_probs=90.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      ..+++.|+..+.+.-.|..++....+.....    +|-+-+.- -|++++.|+..|.+++.+.++|............  
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v--   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV--   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence            5677888888999999998886665533322    22222111 3678999999999999999999654333322211  


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeE
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC  294 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i  294 (372)
                                   . ......+++.++..|+.|+..+..|.++..++...+-..+--.+-+..|.++.+.++. ..|.+
T Consensus        96 -------------k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~-t~G~v  159 (354)
T KOG4649|consen   96 -------------K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI-TAGAV  159 (354)
T ss_pred             -------------c-cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe-ccceE
Confidence                         1 1234567899999999999999999999888887664333333445553355544443 33433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00062  Score=65.46  Aligned_cols=74  Identities=9%  Similarity=0.050  Sum_probs=62.2

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  199 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  199 (372)
                      .+-.+.+++|+|..-.|+.|-.-|.+.+|...+.+.-   .....|+.+|..+.|+++|..++++..-|.+.+|...
T Consensus        58 ~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   58 YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cceehhhhccChHHHHHhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3455678999999988999988999999998765332   2356788899999999999999999999999999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.86  E-value=0.0037  Score=53.30  Aligned_cols=157  Identities=17%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEe-eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421          135 DGSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  213 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  213 (372)
                      ++..+++++.++.|..+|..+++.+... .................++..++.+..++.|..+|+++|+.+.........
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            4556677778889999999999777663 222111111122223334788888888999999999999875544432111


Q ss_pred             cccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 017421          214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN  292 (372)
Q Consensus       214 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg  292 (372)
                      ....+.      ....+..-....++ .++.++.++. +.+ |+.+++.+....  ...+..+ .. .++..|+.++.++
T Consensus       155 ~~~~~~------~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~-~~~~~l~~~~~~~  222 (238)
T PF13360_consen  155 GSSPIS------SFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PS-VDGGTLYVTSSDG  222 (238)
T ss_dssp             SS--EE------EETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EE-CCCTEEEEEETTT
T ss_pred             CCccee------eecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ce-eeCCEEEEEeCCC
Confidence            000000      00112222222344 6666676775 555 999998665333  2333332 33 5677888777999


Q ss_pred             eEEEEeccccc
Q 017421          293 LCKVNSVLLLT  303 (372)
Q Consensus       293 ~i~vwd~~~~~  303 (372)
                      .|..||+++.+
T Consensus       223 ~l~~~d~~tG~  233 (238)
T PF13360_consen  223 RLYALDLKTGK  233 (238)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCC
Confidence            99999997643

...

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.77  E-value=0.0035  Score=61.76  Aligned_cols=146  Identities=12%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             CCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-------CCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          136 GSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-------QRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       136 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      .++|+.- .....|+-.|++.|+.+..-..   +.. +.-..+.|+       ...-+.|-.+..+..||.+-.......
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeec---CCC-cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            3444432 3456788889999876665322   221 223344443       234566777889999999864411111


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEE
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS  287 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s  287 (372)
                      .     ....|.      ......|++-+.+| +||+|+.+|.|++||--..+....+++-..+|..|..+ .||++|+.
T Consensus       569 ~-----~~k~Y~------~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt-~DGkwila  635 (794)
T PF08553_consen  569 S-----QSKQYS------SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVT-ADGKWILA  635 (794)
T ss_pred             c-----cccccc------cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEec-CCCcEEEE
Confidence            0     001111      22367788877777 69999999999999943333334455667899999999 99999886


Q ss_pred             EeCCCeEEEEec
Q 017421          288 GSDDNLCKVNSV  299 (372)
Q Consensus       288 ~~~dg~i~vwd~  299 (372)
                      .+ +..|.+++.
T Consensus       636 Tc-~tyLlLi~t  646 (794)
T PF08553_consen  636 TC-KTYLLLIDT  646 (794)
T ss_pred             ee-cceEEEEEE
Confidence            65 566777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.023  Score=52.27  Aligned_cols=199  Identities=11%  Similarity=0.075  Sum_probs=131.2

Q ss_pred             CceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeEEEEECCC
Q 017421          125 SRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGS  200 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~  200 (372)
                      ....+++.++.++.+ ++...+..|.+.|..............    ....++++|+++.+..+..   ++.+.+.|..+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t  149 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT  149 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence            345577888888754 444556899999977765554433222    5778999999988877765   67888888888


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEE-E----eecCCCCeEE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSL-R----ILAHTSDVNT  274 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~-~----~~~~~~~v~~  274 (372)
                      ++.........                .+ ..++++|+|+.++... .++.|.+.|........ .    .. -......
T Consensus       150 ~~~~~~~~vG~----------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~  211 (381)
T COG3391         150 NKVTATIPVGN----------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAG  211 (381)
T ss_pred             CeEEEEEecCC----------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCce
Confidence            77644422110                13 7899999999665554 68899999977665543 1    11 2234467


Q ss_pred             EEEeCCCCCEEEEEeCC---CeEEEEeccccc--CCCC-----CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          275 VCFGDESGHLIYSGSDD---NLCKVNSVLLLT--RSIN-----PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~--~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +.++ ++|..+.+....   +.+...|..+..  ....     ....+..+|+|+.+.+...     +.+.+.+-|..+.
T Consensus       212 i~v~-~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-----~~~~V~vid~~~~  285 (381)
T COG3391         212 IAVD-PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-----QGGTVSVIDGATD  285 (381)
T ss_pred             EEEC-CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-----CCCeEEEEeCCCC
Confidence            8888 888876665443   588888877422  1111     4566899999999887732     2455666666665


Q ss_pred             eEEEEEe
Q 017421          345 RTFYSFM  351 (372)
Q Consensus       345 ~~~~~~~  351 (372)
                      +......
T Consensus       286 ~v~~~~~  292 (381)
T COG3391         286 RVVKTGP  292 (381)
T ss_pred             ceeeeec
Confidence            5555443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.75  E-value=0.0055  Score=56.22  Aligned_cols=194  Identities=13%  Similarity=0.067  Sum_probs=103.1

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-----cCCcceEEEEECC-----CC---CEEEEE
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSP-----DQ---RHLVYA  187 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-----~~---~~l~~~  187 (372)
                      ....++|++++.| |=-++|+|..+|.+.|.|++....+.......     .....|+++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            4447899999997 55689999999999999998876666533222     1234577888863     33   468889


Q ss_pred             eCCCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEE-EcCC-----------------C---CEEEEE
Q 017421          188 SMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK-FSTD-----------------G---RELVAG  245 (372)
Q Consensus       188 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~-~sp~-----------------~---~~l~s~  245 (372)
                      +..|.+.+|.+-- ..-..........          ..+.++|..+. |+.+                 |   +.++..
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~----------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv  231 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGAT----------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV  231 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeecc----------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence            9999999998742 1111111111100          01222333332 2111                 1   123334


Q ss_pred             eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC----CCCCEEEEEeCCCeEEEEecccccC----------CCCCeeE
Q 017421          246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD----ESGHLIYSGSDDNLCKVNSVLLLTR----------SINPCNK  311 (372)
Q Consensus       246 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp----~~~~~l~s~~~dg~i~vwd~~~~~~----------~~~~v~~  311 (372)
                      ..+..++++...+.+..++.....-.+..+.+-+    ..+..|++-..+|.|++|.+..++.          ....+..
T Consensus       232 vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~  311 (395)
T PF08596_consen  232 VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS  311 (395)
T ss_dssp             E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred             EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence            4468899999988776665543222333344420    3566788888999999999875541          1123456


Q ss_pred             EEeccCCCeEEEEe
Q 017421          312 YLFNPCNKYLIIYL  325 (372)
Q Consensus       312 ~~~s~~g~~l~~~~  325 (372)
                      ..++++|+.++-.+
T Consensus       312 ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  312 SSISRNGDIFYWTG  325 (395)
T ss_dssp             -EE-TTS-EEEE-S
T ss_pred             cEECCCCCEEEEeC
Confidence            77889998776553

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=7.3e-05  Score=65.61  Aligned_cols=76  Identities=24%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             CccccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          225 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       225 ~h~~~i~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                      ++...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-.+.++|+.|...|.|.|||++.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            3556899999999877 6788899999999999999998888877 88999999855667888888999999999984

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.73  E-value=0.0022  Score=60.94  Aligned_cols=105  Identities=18%  Similarity=0.235  Sum_probs=64.9

Q ss_pred             CcEEEEeCCC----CeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceec
Q 017421          146 SQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSA  220 (372)
Q Consensus       146 g~i~vwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  220 (372)
                      +.|.|.|..+    +..+...+.   -...+..+.++|||+++++++. ++.|.|.|+.+.+......+ .....+.-.+
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-~~~~~vvaev  371 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-KPRDAVVAEP  371 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-CccceEEEee
Confidence            4577777766    322333222   2225789999999999887765 89999999987553110000 0000000000


Q ss_pred             cCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       221 ~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                          .-.......+|.++|+...+-..|..|-.||+.+
T Consensus       372 ----evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        372 ----ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ----ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                0011345678999999888888999999999876

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.00029  Score=66.27  Aligned_cols=117  Identities=18%  Similarity=0.172  Sum_probs=88.9

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  248 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d  248 (372)
                      ...|.--+++..+++++.|+..|.+++|+-.++......+-               +-...+..+..+++..++|.|+..
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---------------~~~~~~~~~~vs~~e~lvAagt~~   97 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---------------GATGITCVRSVSSVEYLVAAGTAS   97 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc---------------CccceEEEEEecchhHhhhhhcCC
Confidence            33455556677889999999999999999887765433321               122356677788988899999999


Q ss_pred             CeEEEEECCCCeEEEE-----e-ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          249 DCIYVYDLEANKLSLR-----I-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~-----~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                      |.|.++.+....+...     . ..|...|++++|+ +++..+++|...|+|..-.+.+
T Consensus        98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence            9999998876432111     1 2378899999999 9999999999999998887764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.70  E-value=0.0037  Score=61.61  Aligned_cols=135  Identities=14%  Similarity=0.168  Sum_probs=88.1

Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-------CCEEEEEeCCCeE
Q 017421          180 DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-------GRELVAGSSDDCI  251 (372)
Q Consensus       180 ~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-------~~~l~s~s~dg~i  251 (372)
                      +.++|+.. .....|+-.|++.|+++........               .+|..+  .|+       ..-.+.|-.+..+
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~---------------~~v~~~--~p~~K~aqlt~e~tflGls~n~l  554 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD---------------IPVVDI--APDSKFAQLTNEQTFLGLSDNSL  554 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCC---------------cceeEe--cccccccccCCCceEEEECCCce
Confidence            34444443 3457899999999998665553321               123333  342       2234566667889


Q ss_pred             EEEECCCCe--EEEE-ee--cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCe
Q 017421          252 YVYDLEANK--LSLR-IL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKY  320 (372)
Q Consensus       252 ~iwd~~~~~--~~~~-~~--~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~  320 (372)
                      ..||.+-..  ++.. ..  ......+|++-+ .+| +||+|+.+|.||+||.-      .+.+...+|..+..+.||++
T Consensus       555 friDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt-~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  555 FRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT-EDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW  632 (794)
T ss_pred             EEeccCCCCCceeeccccccccCCCceEEEec-CCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence            999998532  2211 11  234466777776 555 79999999999999953      34467889999999999999


Q ss_pred             EEEEeeeeEEEee
Q 017421          321 LIIYLILVISIYS  333 (372)
Q Consensus       321 l~~~~~~~~~~~d  333 (372)
                      |++.+...+-+++
T Consensus       633 ilaTc~tyLlLi~  645 (794)
T PF08553_consen  633 ILATCKTYLLLID  645 (794)
T ss_pred             EEEeecceEEEEE
Confidence            9988644444433

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.67  E-value=0.049  Score=50.83  Aligned_cols=158  Identities=19%  Similarity=0.191  Sum_probs=89.1

Q ss_pred             ceEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC---------
Q 017421          126 RAYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---------  191 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------  191 (372)
                      .+..+.++|||+++|.+ +..|    .|+|+|+.+++.+...+...    ....+.|.++++.|+....+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            34467899999999865 3334    59999999996665433222    123499999998887765433         


Q ss_pred             --eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCC----eE
Q 017421          192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEAN----KL  261 (372)
Q Consensus       192 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~----~~  261 (372)
                        .|+.|.+.++............            .......+..++|+++|+..+..    ..+.+.|+..+    ..
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~  268 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPD------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK  268 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TT------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred             CcEEEEEECCCChHhCeeEEeecC------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence              3777888766533111111110            11125678899999988754332    34888888874    23


Q ss_pred             EEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEecc
Q 017421          262 SLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVL  300 (372)
Q Consensus       262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~  300 (372)
                      ...+......+....-+ ..+.+++...   .++.|.-.++.
T Consensus       269 ~~~l~~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~  309 (414)
T PF02897_consen  269 PKLLSPREDGVEYYVDH-HGDRLYILTNDDAPNGRLVAVDLA  309 (414)
T ss_dssp             EEEEEESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEEEEETT
T ss_pred             cEEEeCCCCceEEEEEc-cCCEEEEeeCCCCCCcEEEEeccc
Confidence            33444344444443333 3444544443   23556555654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.67  E-value=0.025  Score=48.44  Aligned_cols=198  Identities=11%  Similarity=0.074  Sum_probs=125.7

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  199 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  199 (372)
                      +.+-...+.++.|+|+.+.|++......-.|+=...|+.+.... +.+.. ..-.+.+.-++++.++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            45556679999999999988887777777777666776666543 22222 35677888788877777778888888877


Q ss_pred             CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEeecC-------C
Q 017421          200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAH-------T  269 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~-------~  269 (372)
                      .+..........      +......+.....-.++|+|..+.|..+-+..-+.||.+.....   ......+       -
T Consensus       159 ~~t~~~~~~~~~------i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~  232 (316)
T COG3204         159 ADTTVISAKVQK------IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV  232 (316)
T ss_pred             CCccEEeccceE------EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence            654321211110      00000001134678899999988888887776677776653321   1111111       2


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------c-------ccCCCCCeeEEEeccCCCeEEEEe
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------L-------LTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~-------~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      ..|.++.|+++.+.+|+.+.+++.+.-.|..       .       +.........++..++|...+++-
T Consensus       233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE  302 (316)
T COG3204         233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE  302 (316)
T ss_pred             eccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence            3577889998888899888888887777764       1       112223446678888887766663

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00035  Score=65.00  Aligned_cols=80  Identities=13%  Similarity=0.065  Sum_probs=65.4

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceE-EEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVDVGSG  201 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~  201 (372)
                      .+..+.-+.|+|.-.++|.+..+|.|.+..+. -+++..   ..-+..+++ +++|.|||+.|++|-.||+|++.|+.++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            45678889999999999999999999999988 434443   332333565 9999999999999999999999999998


Q ss_pred             ceeee
Q 017421          202 TMESL  206 (372)
Q Consensus       202 ~~~~~  206 (372)
                      .....
T Consensus        95 ~~l~~   99 (665)
T KOG4640|consen   95 GRLVS   99 (665)
T ss_pred             Cceec
Confidence            76443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00016  Score=69.39  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             eEEEEECCCCCEEEEEeC----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          172 VTDTSLSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                      .+-.+|+|...++++++.    .|.|.||- ++|++..-..                 ....+++++|+|..-.|+.|-.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~hatSLCWHpe~~vLa~gwe   79 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPVHATSLCWHPEEFVLAQGWE   79 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cceehhhhccChHHHHHhhccc
Confidence            445689999999988764    56777774 3444322211                 2225778999999888899988


Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      -|.+.+|...+.+.-.....|..+|..+.|| ++|..++++..-|.+.+|...
T Consensus        80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence            9999999998877655556799999999999 999999999999999999875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.64  E-value=0.0017  Score=60.19  Aligned_cols=144  Identities=21%  Similarity=0.188  Sum_probs=87.4

Q ss_pred             CCCceEEEEECCCCCEEEEE-eCCCc--EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC--eEEEE
Q 017421          123 TTSRAYVSQFSADGSLFVAG-FQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP--IVHIV  196 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~-~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vw  196 (372)
                      ..+.-...+|+|||++|+.. ..||.  |.++|+.... ...+.   ...+.-..-.|+|||+.|+..+. .|  .|.++
T Consensus       236 ~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt---~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~  311 (425)
T COG0823         236 FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLT---NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY  311 (425)
T ss_pred             cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecc---cCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence            34445556899999887654 55554  6666777664 22222   22223347789999999988765 33  57777


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCeEEEEeecCCCCeE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDC--IYVYDLEANKLSLRILAHTSDVN  273 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~v~  273 (372)
                      +.+.+....+.....                 .-..-.|+|||++|+..+. +|.  |.+.|+.++...+.+. +.....
T Consensus       312 ~~~g~~~~riT~~~~-----------------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e  373 (425)
T COG0823         312 DLEGSQVTRLTFSGG-----------------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNE  373 (425)
T ss_pred             CCCCCceeEeeccCC-----------------CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCC
Confidence            887776533332111                 1126779999999987664 344  7777776665433333 333334


Q ss_pred             EEEEeCCCCCEEEEEe
Q 017421          274 TVCFGDESGHLIYSGS  289 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~  289 (372)
                      ...|. +++..++..+
T Consensus       374 ~ps~~-~ng~~i~~~s  388 (425)
T COG0823         374 SPSWA-PNGRMIMFSS  388 (425)
T ss_pred             CCCcC-CCCceEEEec
Confidence            55666 7777666544

>smart00320 WD40 WD40 repeats

Probab=97.64  E-value=0.00023  Score=40.59  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS  298 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd  298 (372)
                      +++...+..|...|.++.|+ +++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFS-PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence            34566677888999999999 7789999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.59  E-value=0.06  Score=49.55  Aligned_cols=212  Identities=14%  Similarity=0.136  Sum_probs=113.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE----------------------------------------EEeeec
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------------------------------------QKDILA  165 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------~~~~~~  165 (372)
                      .|..+.|+++..-|++|...|.|.||.....+.-                                        ......
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5888999999888999999999999876432111                                        001111


Q ss_pred             ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-----CC-
Q 017421          166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG-  239 (372)
Q Consensus       166 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-----~~-  239 (372)
                      ...+++|++++.+ |=-+++.|..+|.+.|.|++....+.........        ........++++.|..     |+ 
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~--------~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF--------LSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------T-SS----EEEEEEEEEE-TTSSS
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc--------cccccccCeeEEEEEEEecCCCcc
Confidence            2335689999997 5558999999999999999988775543333200        0011334677888863     33 


Q ss_pred             --CEEEEEeCCCeEEEEECC--C-Ce----EEEEeecCCCCeEEEE-EeCCCC-------------------CEEEEEeC
Q 017421          240 --RELVAGSSDDCIYVYDLE--A-NK----LSLRILAHTSDVNTVC-FGDESG-------------------HLIYSGSD  290 (372)
Q Consensus       240 --~~l~s~s~dg~i~iwd~~--~-~~----~~~~~~~~~~~v~~~~-~sp~~~-------------------~~l~s~~~  290 (372)
                        -.+++|+..|.+.+|.+.  . +.    .......+.++|..+. ++..+|                   +-++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              467899999999999874  1 21    1111124556666554 321111                   12344445


Q ss_pred             CCeEEEEeccccc----CCCC--CeeEEEecc-----CCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          291 DNLCKVNSVLLLT----RSIN--PCNKYLFNP-----CNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       291 dg~i~vwd~~~~~----~~~~--~v~~~~~s~-----~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      +..++++.+.+.+    ....  ....+.+-+     .+..|++-      .-++.++++.+...+++..+..
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l------~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCL------FNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEE------ETTSEEEEEETTT--EEEEEE-
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEE------ECCCcEEEEECCCchHhhcccC
Confidence            7779998876432    1112  223344421     22222222      1468899999888888877655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.57  E-value=0.064  Score=49.85  Aligned_cols=178  Identities=13%  Similarity=0.113  Sum_probs=91.8

Q ss_pred             EEECCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          130 SQFSADGSLFVAGFQA----------S-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~d----------g-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      ++.+|.|..+|....+          . .|.||+... ..+.......   +.+.++.|+.+.. |++...||.+++||+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~---~~iv~~~wt~~e~-LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS---GRIVGMGWTDDEE-LVVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC---CCEEEEEECCCCe-EEEEEcCCEEEEEeC
Confidence            4566666666655333          1 489999654 4555533322   5799999998655 556678999999998


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEe---ec-----CC
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---LA-----HT  269 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~---~~-----~~  269 (372)
                      ....   ..........       .+-....+....+..+|  ++.-+.++.+.+.+--... ....+   ..     +.
T Consensus       109 ~G~~---~fsl~~~i~~-------~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~  176 (410)
T PF04841_consen  109 FGEF---QFSLGEEIEE-------EKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHW  176 (410)
T ss_pred             CCce---eechhhhccc-------cCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccc
Confidence            6333   1111110000       00001122223333345  3333344544443221111 11111   11     00


Q ss_pred             C-CeEE-EEEeCCCCCEEEEEeCCCeEEEEeccccc--CCCCCeeEEEeccCCCeEEEEe
Q 017421          270 S-DVNT-VCFGDESGHLIYSGSDDNLCKVNSVLLLT--RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       270 ~-~v~~-~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      . .... ..++ .+....+....++.+.+.+-....  ...+++..++.||+|+++|..+
T Consensus       177 ~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t  235 (410)
T PF04841_consen  177 WPSWTVIPLLS-SDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFT  235 (410)
T ss_pred             ccccccceEee-cCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEE
Confidence            0 1111 2344 555556666666777755543321  2346899999999999998775

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.57  E-value=0.026  Score=52.34  Aligned_cols=192  Identities=11%  Similarity=-0.006  Sum_probs=104.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  213 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  213 (372)
                      +..++++..++.|.-+|..+++.+.......... ... ..-+|  .+..++.++.+|.+..+|..+|+..-........
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~~-~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-TLR-GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc-ccc-CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence            4456677888999999999997766533211100 000 00111  2345677788999999999988764332211110


Q ss_pred             cccceeccCCCCccccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421          214 DGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       214 ~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d  291 (372)
                      ...         .......+.-+|  .+..++.++.+|.+..+|..+++.+.....  .....+..   .+..++.++.+
T Consensus       238 ~~~---------~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~  303 (394)
T PRK11138        238 GAT---------EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQN  303 (394)
T ss_pred             Ccc---------chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCC
Confidence            000         000001111122  245666777889999999999987655432  11122222   35567777788


Q ss_pred             CeEEEEecccccC----C---CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          292 NLCKVNSVLLLTR----S---INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       292 g~i~vwd~~~~~~----~---~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      |.+..+|..+.+.    .   .....+... -++ .++++.      .|+.+...|..+|+.+..+.
T Consensus       304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g-~l~v~~------~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        304 DRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNG-YLVVGD------SEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             CeEEEEECCCCcEEEcccccCCCcccCCEE-ECC-EEEEEe------CCCEEEEEECCCCCEEEEEE
Confidence            8888888764321    0   011122222 133 333332      46777777777777766654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.55  E-value=0.0043  Score=57.74  Aligned_cols=132  Identities=14%  Similarity=0.046  Sum_probs=72.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                      .+..+.++|+|+.+++ +.+|...+|.........                     .+.....+|.+.++ +|+-....+
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~---------------------~G~g~~~vw~~~n~-yAv~~~~~~   90 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA---------------------FGSGLSFVWSSRNR-YAVLESSST   90 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE---------------------EEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc---------------------cCceeEEEEecCcc-EEEEECCCe
Confidence            5789999999999988 457888888743322211                     12456688998554 666666888


Q ss_pred             EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEee
Q 017421          251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      |.++.--+.+....+... ..+..  .- . |.+|...+.+ .|.+||+.+.+    -...+|..+.|+++|.+++..+.
T Consensus        91 I~I~kn~~~~~~k~i~~~-~~~~~--If-~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen   91 IKIYKNFKNEVVKSIKLP-FSVEK--IF-G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             EEEEETTEE-TT-----S-S-EEE--EE---SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S
T ss_pred             EEEEEcCccccceEEcCC-cccce--EE-c-CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC
Confidence            999733222222233321 12333  33 2 7877777655 89999998543    12234899999999999998865


Q ss_pred             eeEEE
Q 017421          327 LVISI  331 (372)
Q Consensus       327 ~~~~~  331 (372)
                      ..+.+
T Consensus       165 ~~i~i  169 (443)
T PF04053_consen  165 DSIYI  169 (443)
T ss_dssp             -SEEE
T ss_pred             CeEEE
Confidence            55444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00057  Score=63.63  Aligned_cols=85  Identities=13%  Similarity=0.194  Sum_probs=72.0

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEeccccc----
Q 017421          229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVNSVLLLT----  303 (372)
Q Consensus       229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----  303 (372)
                      .+.-+.|+|.-.+||++..+|.|.+..+. .+.+.++.-|...++ +++|. |||++||+|-.||+|++-|+.+..    
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEccCCCceec
Confidence            67889999999999999999999999988 888888887777787 99999 999999999999999999997543    


Q ss_pred             ---CCCCCeeEEEec
Q 017421          304 ---RSINPCNKYLFN  315 (372)
Q Consensus       304 ---~~~~~v~~~~~s  315 (372)
                         .....|..+-|+
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence               223456666665

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.53  E-value=0.015  Score=56.31  Aligned_cols=149  Identities=15%  Similarity=0.101  Sum_probs=87.5

Q ss_pred             CCceEEEEECCCCCEEEEEe------CCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-CeEE
Q 017421          124 TSRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVH  194 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~  194 (372)
                      ...+...+++|+|+.++...      .|.  .|.+++.... . ...  ..+.  ..+.-.|+|||+.+.+.... ..++
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~  422 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVR  422 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eee--ecCC--CCCCceECCCCCceEEEecCcceEE
Confidence            34678899999999987654      233  5556564322 2 221  1222  37788999998888776543 2222


Q ss_pred             EE-----------ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCe
Q 017421          195 IV-----------DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANK  260 (372)
Q Consensus       195 vw-----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i---wd~~~~~  260 (372)
                      +.           ++..+....                   .....|..+.|||||..++... ++.|.+   -....|.
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~-------------------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS-------------------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh-------------------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            22           332222110                   0123799999999999888766 477776   4434453


Q ss_pred             E-E---EEeec-CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          261 L-S---LRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       261 ~-~---~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      . +   ..+.. -...+.++.|. .++.++ ++..++.-.+|.+.
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~-~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWR-TGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             eeecccEEeecccCCccccceEe-cCCEEE-EEecCCCCceEEEe
Confidence            1 1   11222 23346889998 777754 55555555566654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.075  Score=48.96  Aligned_cols=198  Identities=15%  Similarity=0.124  Sum_probs=125.4

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCce
Q 017421          126 RAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTM  203 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~  203 (372)
                      ....+...+++..+.+. .....+.+.+.. ........ ..+. .....+..++.+..+... ..++.|.+.|..+.+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~-~~g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSL-SVGG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeec-cCCC-ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence            45567788888555443 222345555554 22222111 1111 345678888888855544 4468899999776655


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      ........                 ....++++|+++.+..+..   ++++.+.|-.+++.......-..+ ..++++ |
T Consensus       109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p  169 (381)
T COG3391         109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P  169 (381)
T ss_pred             eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence            33332211                 4567899999987766554   688999999999888776543334 889999 8


Q ss_pred             CCCEEEEEe-CCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          281 SGHLIYSGS-DDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       281 ~~~~l~s~~-~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                      +|..++... .++.|.+.|.....          ........+.++|+|..+.+.....   +++.+..-|..++....
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---~~~~v~~id~~~~~v~~  245 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---GSNNVLKIDTATGNVTA  245 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC---CCceEEEEeCCCceEEE
Confidence            898666655 78899999976331          1223447789999999887764322   13456666666555444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00039  Score=62.04  Aligned_cols=77  Identities=10%  Similarity=0.028  Sum_probs=61.7

Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-cc--------------------CCCCCeeEEEeccCCCeEEEEe
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-LT--------------------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-~~--------------------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      -|..+|.++.++ +.+..+++....|.|.-|.... ++                    .......++.|+|+|..+++-.
T Consensus       142 lH~sPV~~i~y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  142 LHFSPVKKIRYN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             cccCceEEEEee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            478899999999 8999999998899999998761 11                    2334678999999999998764


Q ss_pred             eeeEEEeeceEEEeecccceEEEEE
Q 017421          326 ILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       326 ~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                            -|..|+++++.+|+.++.+
T Consensus       221 ------~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  221 ------PDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ------cccEEEEEEeccchhhhhh
Confidence                  4788889999998876654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.057  Score=47.79  Aligned_cols=181  Identities=18%  Similarity=0.117  Sum_probs=99.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeee-cccC-CcceEEEEECCCCCEEEEEeC-----------C
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL-AKSL-RWTVTDTSLSPDQRHLVYASM-----------S  190 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~-----------d  190 (372)
                      ++.+.++..-..+..|+++..  -+.+++++.+........ ..+. ......+...|+|.+.+....           -
T Consensus        65 p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~  142 (307)
T COG3386          65 PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT  142 (307)
T ss_pred             CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence            344444443333334444332  366777765544222111 1111 235678888999887665433           1


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCC--C----e-EE
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA--N----K-LS  262 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~--~----~-~~  262 (372)
                      |.|+.+|. .+.......                ++-...+.|+||||++.|+.+.. .+.|..|++..  +    + ..
T Consensus       143 G~lyr~~p-~g~~~~l~~----------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~  205 (307)
T COG3386         143 GSLYRVDP-DGGVVRLLD----------------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF  205 (307)
T ss_pred             ceEEEEcC-CCCEEEeec----------------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence            33444443 333322222                12235678999999987776654 47788888752  1    1 11


Q ss_pred             EEeecCCCCeEEEEEeCCCCCEEEEEeCCC-eEEEEecc-----cccCCCCCeeEEEec-cCCCeEEEE
Q 017421          263 LRILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVNSVL-----LLTRSINPCNKYLFN-PCNKYLIIY  324 (372)
Q Consensus       263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-~i~vwd~~-----~~~~~~~~v~~~~~s-~~g~~l~~~  324 (372)
                      ..+....+..-.++.. .+|.+.+++..+| .|.+|+..     ...-....+++++|- |+.+.|.+.
T Consensus       206 ~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         206 VDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             EEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence            2222344566678887 8888876554554 89999886     111233567888884 455555544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.40  E-value=0.02  Score=41.74  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          127 AYVSQFSA---DG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       127 v~~~~~s~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      |++|++..   || +-|++|+.|..|+||+-+.  .+....   . ...|+++.-... ..++.+..+|+|-+|+-... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~---e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT---E-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe---c-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce-
Confidence            56666544   33 5799999999999998553  333322   1 225777776655 66999999999999986332 


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcC-C--C-CEEEEEeCCCeEE
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-D--G-RELVAGSSDDCIY  252 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~--~-~~l~s~s~dg~i~  252 (372)
                         ..+....               ..+.++.+.. +  | .-|++|-.+|.|-
T Consensus        74 ---lWRiKSK---------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 ---LWRIKSK---------------NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---eeeeccC---------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence               2222211               1455555433 2  3 3688888888774

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.019  Score=52.88  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=88.0

Q ss_pred             EECCCCCEEEE-EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE-------EEEEeC
Q 017421          176 SLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-------LVAGSS  247 (372)
Q Consensus       176 ~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-------l~s~s~  247 (372)
                      ....+.++|+. +.....++-.|++.|+.+....+..                 .|+-+.+.|+.+.       -+.|=.
T Consensus       340 L~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs  402 (644)
T KOG2395|consen  340 LHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLS  402 (644)
T ss_pred             hhccccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeec
Confidence            33345555543 4445668889999998765554322                 3666666665421       134555


Q ss_pred             CCeEEEEECCCCe--EEEEeecC----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEec
Q 017421          248 DDCIYVYDLEANK--LSLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFN  315 (372)
Q Consensus       248 dg~i~iwd~~~~~--~~~~~~~~----~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s  315 (372)
                      +..|.-||.+-..  .+..-.+|    ...-.|.+-. .+ -+|++||.+|.||+||.-      .+.+...+|..+..+
T Consensus       403 ~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt  480 (644)
T KOG2395|consen  403 DNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT  480 (644)
T ss_pred             CCceEEecccccCcceeeeeeccccccccccceeeec-CC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence            7788899987322  12122222    2344555554 44 479999999999999963      345788899999999


Q ss_pred             cCCCeEEEEeeeeEEE
Q 017421          316 PCNKYLIIYLILVISI  331 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~  331 (372)
                      .+|++|++.+...+-+
T Consensus       481 adGKwil~Tc~tyLlL  496 (644)
T KOG2395|consen  481 ADGKWILATCKTYLLL  496 (644)
T ss_pred             ccCcEEEEecccEEEE
Confidence            9999998776444433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.30  E-value=0.037  Score=50.45  Aligned_cols=199  Identities=13%  Similarity=0.112  Sum_probs=101.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-----cC---------CcceEEEEECCCCCEEEEEeC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SL---------RWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~---------~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      ...+....|||+|+.+|... ++.|.++++.++...+-.....     +.         -..-.++-||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788899999999998876 4789999988773332111110     00         112357889999999988754


Q ss_pred             C-CeEEEEE---CCCCce--eeecceeecccc--------cceeccCC-----------CCccccEEEEEEcCCCCEEEE
Q 017421          190 S-PIVHIVD---VGSGTM--ESLANVTEIHDG--------LDFSAADD-----------GGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       190 d-g~i~vwd---~~~~~~--~~~~~~~~~~~~--------~~~~~~~~-----------~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      | ..|..+.   ......  ........+..|        ..+.....           ..-...+..+.|.++++.|+.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            3 2222222   211110  000000000000        00000000           012346888999999984443


Q ss_pred             Ee--CC---CeEEEEECCCCeEEEEeec-CCCCe---EEEEEe-CCCCCEEEEEeCCCeEEEEecc-------cccCCCC
Q 017421          245 GS--SD---DCIYVYDLEANKLSLRILA-HTSDV---NTVCFG-DESGHLIYSGSDDNLCKVNSVL-------LLTRSIN  307 (372)
Q Consensus       245 ~s--~d---g~i~iwd~~~~~~~~~~~~-~~~~v---~~~~~s-p~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~  307 (372)
                      .-  .+   ..+.+.|..++.+...+.. ....|   ....|. +.+..+|.....+|.-+||-+.       .+....-
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~  280 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDW  280 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCce
Confidence            32  22   2477788877654333321 22222   244443 3555666666688876666543       1223444


Q ss_pred             CeeE-EEeccCCCeEEE
Q 017421          308 PCNK-YLFNPCNKYLII  323 (372)
Q Consensus       308 ~v~~-~~~s~~g~~l~~  323 (372)
                      .|.. +.|+++++.|..
T Consensus       281 ~V~~i~~~d~~~~~iyf  297 (353)
T PF00930_consen  281 EVTSILGWDEDNNRIYF  297 (353)
T ss_dssp             -EEEEEEEECTSSEEEE
T ss_pred             eecccceEcCCCCEEEE
Confidence            5644 678888776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.30  E-value=0.021  Score=52.93  Aligned_cols=137  Identities=13%  Similarity=0.054  Sum_probs=87.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      +..+++++.+|.+..+|..+++.+.+...  +   ....+.  ..+..++.++.+|.+..+|..+++..-.......   
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~---  325 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREY--G---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH---  325 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecC--C---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC---
Confidence            45566777889999999999866554221  1   111122  2466788888899999999998875332211000   


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCCeE
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESGHLIYSGSDDNLC  294 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp~~~~~l~s~~~dg~i  294 (372)
                                  ........  .+..|+.++.+|.+...|..+|+.+.........+.+ ..+.   +..|+.++.||.|
T Consensus       326 ------------~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~---~~~l~v~t~~G~l  388 (394)
T PRK11138        326 ------------RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA---DDKLLIQARDGTV  388 (394)
T ss_pred             ------------CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE---CCEEEEEeCCceE
Confidence                        01111112  2457788899999999999999988776543333332 2332   3478888999999


Q ss_pred             EEEec
Q 017421          295 KVNSV  299 (372)
Q Consensus       295 ~vwd~  299 (372)
                      ..+++
T Consensus       389 ~~~~~  393 (394)
T PRK11138        389 YAITR  393 (394)
T ss_pred             EEEeC
Confidence            88764

>smart00320 WD40 WD40 repeats

Probab=97.27  E-value=0.00044  Score=39.32  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=29.8

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD  152 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  152 (372)
                      +..|...|.+++|++++.++++++.|+.+++|+
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.27  E-value=0.075  Score=47.03  Aligned_cols=197  Identities=15%  Similarity=0.131  Sum_probs=116.0

Q ss_pred             CccccCCceeEeeeeeCCCCCccccCCCCceEEE-------EECCC-CCEEEEEeCCCcEEEEeCC-CCeEEEEee-ecc
Q 017421           97 GRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS-------QFSAD-GSLFVAGFQASQIRIYDVE-RGWKIQKDI-LAK  166 (372)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~s~~-~~~l~~~~~dg~i~vwd~~-~~~~~~~~~-~~~  166 (372)
                      ..++..++...++++.|......++-....+...       -.-|. .+.|.+-|.||.+.-..+. .|+...+.. .+.
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~  179 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD  179 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence            3456667778888888888776666555554322       22232 2457788899999999887 343332211 111


Q ss_pred             cCCcc-eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeec--c-cccceeccCCCCccccEEEEEEcCCCCEE
Q 017421          167 SLRWT-VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI--H-DGLDFSAADDGGYSFGIFSLKFSTDGREL  242 (372)
Q Consensus       167 ~~~~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~h~~~i~~~~~sp~~~~l  242 (372)
                      ....+ +..-.+...+..++..+.+|.|+--|+..............  . ..-.+.|       +.-.-+++++..+.|
T Consensus       180 ~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP-------GG~Q~~A~~~~~~rl  252 (342)
T PF06433_consen  180 PDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP-------GGWQLIAYHAASGRL  252 (342)
T ss_dssp             TTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--------SSS-EEEETTTTEE
T ss_pred             CCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC-------cceeeeeeccccCeE
Confidence            11222 23445555666777788999999999987765433222110  0 0011111       123346777755555


Q ss_pred             EEEe---CCC-------eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC-EEEEEe-CCCeEEEEecccc
Q 017421          243 VAGS---SDD-------CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGS-DDNLCKVNSVLLL  302 (372)
Q Consensus       243 ~s~s---~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~s~~-~dg~i~vwd~~~~  302 (372)
                      .+.-   .++       .|.++|+.+++.+.++.. ..++.+|+++ .+.+ +|++.+ .++.|.+||..+.
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vs-qd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVS-QDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEE-SSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEc-cCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            4321   111       499999999999999874 2467799999 5554 665544 5799999999864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.26  E-value=0.037  Score=45.75  Aligned_cols=153  Identities=16%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             CCceEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCe
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPI  192 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~  192 (372)
                      ..+.+.-..+|+|++++ |..          .|.++.|-....-.  .   ....-..-..++|+.+.+.+... +.+-.
T Consensus       108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~--~---i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVE--L---IWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             hcccccCccCCCCceee-eeeccccccccccccEEEEeccCCCce--e---eehhccCCccccccccCcEEEEEccCceE
Confidence            34555667889999854 321          23444444432211  1   11111234578899877766554 55677


Q ss_pred             EEEEE--CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421          193 VHIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       193 i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      |.-||  ..+|.......+........+.+.       ..-.++..-+|++.++.-..++|...|..+|+.+.++.-...
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~  254 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP  254 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC
Confidence            87777  666664322222111111011110       122344466788888888899999999999999999988889


Q ss_pred             CeEEEEEeCCCCCEEEEEe
Q 017421          271 DVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~  289 (372)
                      .|+|++|-.++-..+++..
T Consensus       255 qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  255 QITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             ceEEEEecCCCccEEEEEe
Confidence            9999999855555665543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.21  E-value=0.12  Score=46.38  Aligned_cols=170  Identities=15%  Similarity=0.122  Sum_probs=97.3

Q ss_pred             CcEEEEeCCCCeEEEEeeeccc-CCcceEEEEECCC----CCEEEEEeC---------C-CeEEEEECCCC-----ceee
Q 017421          146 SQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPD----QRHLVYASM---------S-PIVHIVDVGSG-----TMES  205 (372)
Q Consensus       146 g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~----~~~l~~~~~---------d-g~i~vwd~~~~-----~~~~  205 (372)
                      ..|++.|..+.+.+........ +...+..+.+..+    ..+|++|+.         . |.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3578888877765544332221 1112334445443    467777654         2 88999999884     2211


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEee-cCCCCeEEEEEeCCCCC
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDESGH  283 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~  283 (372)
                      ...  ..             ..++|++++-- ++ .|+++. ++.|.+|++...+ ....-. .....+.++...   ++
T Consensus        82 i~~--~~-------------~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~  140 (321)
T PF03178_consen   82 IHS--TE-------------VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KN  140 (321)
T ss_dssp             EEE--EE-------------ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TT
T ss_pred             EEE--Ee-------------ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---cc
Confidence            111  11             23478888755 34 455554 5889999998777 333222 122356666554   56


Q ss_pred             EEEEEeCCCeEEEEeccc----cc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          284 LIYSGSDDNLCKVNSVLL----LT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       284 ~l~s~~~dg~i~vwd~~~----~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +++.|.....+.++..+.    +.     ....+++++.|-++++.++++.      -++++.++.+.
T Consensus       141 ~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D------~~gnl~~l~~~  202 (321)
T PF03178_consen  141 YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD------KDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE------TTSEEEEEEE-
T ss_pred             EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc------CCCeEEEEEEC
Confidence            999999888888775431    11     3455688888887766555553      35777777665

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.20  E-value=0.035  Score=46.58  Aligned_cols=102  Identities=24%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 017421          181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  260 (372)
Q Consensus       181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  260 (372)
                      ..+++.|+..+.+.-.|..+|..........                 .|.+-+.- -|++++.|...|.+++.+.++|.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs   84 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS   84 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence            4567788889999999999988744333211                 22222221 47789999999999999999998


Q ss_pred             EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                      ....+..- +.|.+-+...+++.++..|+.|+..+..|.++
T Consensus        85 ~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   85 QIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             heeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence            77777643 23333333238899999999999999988873

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.14  Score=45.45  Aligned_cols=196  Identities=13%  Similarity=0.053  Sum_probs=105.9

Q ss_pred             EECCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecce
Q 017421          131 QFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV  209 (372)
Q Consensus       131 ~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  209 (372)
                      .|.++... +.+--..+.|.-|+..++....-     .....+.++..-..+..|+++.  .-+.+++.+++........
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-----~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF-----PSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-----ECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence            57777764 44555567888898876633221     1111234444333444444432  2356677765654212111


Q ss_pred             eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      .  ..+         ......+.....|+|.+.++...           -|.|+.+|. .+.....+..+-..-+.|+||
T Consensus       104 ~--~~~---------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~S  171 (307)
T COG3386         104 P--EDG---------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFS  171 (307)
T ss_pred             c--cCC---------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEEC
Confidence            1  111         12246677888999987765443           133444443 455555665555566789999


Q ss_pred             CCCCCEEEEEeC-CCeEEEEeccc--cc-----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeec-eEEEeeccc
Q 017421          279 DESGHLIYSGSD-DNLCKVNSVLL--LT-----------RSINPCNKYLFNPCNKYLIIYLILVISIYSP-NILLDNYFL  343 (372)
Q Consensus       279 p~~~~~l~s~~~-dg~i~vwd~~~--~~-----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~-~i~lw~~~~  343 (372)
                       ||++.|+.+.. .+.|.-|++..  ..           ......-.++...+|.+-+++.      |.+ .|..|+-. 
T Consensus       172 -pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~------~~g~~v~~~~pd-  243 (307)
T COG3386         172 -PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV------WGGGRVVRFNPD-  243 (307)
T ss_pred             -CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc------cCCceEEEECCC-
Confidence             99987777654 47788887752  11           1122333444455555543332      333 66666666 


Q ss_pred             ceEEEEEeee
Q 017421          344 LRTFYSFMVH  353 (372)
Q Consensus       344 ~~~~~~~~~h  353 (372)
                      |+.+......
T Consensus       244 G~l~~~i~lP  253 (307)
T COG3386         244 GKLLGEIKLP  253 (307)
T ss_pred             CcEEEEEECC
Confidence            6666555443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.15  E-value=0.15  Score=45.16  Aligned_cols=81  Identities=16%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             EEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeecccCCc----ceEEEEECCCCCEEEEEeC--CC
Q 017421          128 YVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASM--SP  191 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--dg  191 (372)
                      -.+..+|+++.+.++.          ..-.|.+||..+-..........+++.    ....++++.|++++++...  ..
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3467899999887642          334699999999876666555543221    2345688899998887644  55


Q ss_pred             eEEEEECCCCceeeecc
Q 017421          192 IVHIVDVGSGTMESLAN  208 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~  208 (372)
                      .|.|.|+...+......
T Consensus       119 SVtVVDl~~~kvv~ei~  135 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEID  135 (342)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCCceeeeec
Confidence            79999999888754443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.22  Score=46.27  Aligned_cols=179  Identities=16%  Similarity=0.085  Sum_probs=90.7

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-cCCcce-----EEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTV-----TDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      +.+-++.|+.+.++ ++...||.+++||+....   ...... -....|     ....+..+|  ++.-..++.+.+.+-
T Consensus        81 ~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDDEEL-VVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCCCeE-EEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeC
Confidence            78999999987664 455688999999987442   111110 001112     222333345  333334555544432


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      -.... ............ ...+   .+........++.+....+....++.+.+.+-...+.   +. ..+++..+++|
T Consensus       155 ~~~~~-~~~~~~~~p~~~-~~~~---~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavS  225 (410)
T PF04841_consen  155 IDEPV-KLRRLPEIPGLW-TKFH---WWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVS  225 (410)
T ss_pred             ccccc-hhhccccCCCcc-cccc---cccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEEC
Confidence            22111 001111100000 0000   0000100133445555555555556666444332211   22 24689999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCC
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNK  319 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~  319 (372)
                       |+|+++|.-..+|.+.+.+....+       ........+.|.-+..
T Consensus       226 -png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  226 -PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             -CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence             999999999999999888754111       2234667888876643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.0011  Score=54.37  Aligned_cols=107  Identities=16%  Similarity=0.080  Sum_probs=72.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEE-EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      +..+++|+.+|.|.+|.........-.. ..             +- ..|.+ +.--.++.+..++..+|.|+.|++.-.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s-------------~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CS-------------GE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh-hc-------------cc-ccceeccccccccceeEEeccCCceeeeccccC
Confidence            4668899999999999876221100000 00             00 12222 222234557889999999999999988


Q ss_pred             eEEEEeecCC-CCeEEEEEeCCCCCEEEEE--eCCCeEEEEeccccc
Q 017421          260 KLSLRILAHT-SDVNTVCFGDESGHLIYSG--SDDNLCKVNSVLLLT  303 (372)
Q Consensus       260 ~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~--~~dg~i~vwd~~~~~  303 (372)
                      +.+...-.|+ .++..+..+ ..+++++.+  |.|..++.|++....
T Consensus       135 k~~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  135 KVLGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             ceeeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchhhhh
Confidence            8777777777 677777777 778888888  889999999987443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.04  E-value=0.17  Score=43.28  Aligned_cols=143  Identities=8%  Similarity=0.162  Sum_probs=79.5

Q ss_pred             cccCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE
Q 017421          165 AKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  243 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~  243 (372)
                      ..+-...+.+++|+|+.+ ++++....+.|..++.+ |+......+..               ....-.|++..++.+++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---------------~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---------------FGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------------SSEEEEEE-STTEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---------------CCCceeEEEECCCEEEE
Confidence            334444699999999755 55666668888888874 56544433221               13677888887777777


Q ss_pred             EEeCCCeEEEEECCCCe------EEEEee-----cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc----------
Q 017421          244 AGSSDDCIYVYDLEANK------LSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL----------  302 (372)
Q Consensus       244 s~s~dg~i~iwd~~~~~------~~~~~~-----~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~----------  302 (372)
                      +.-.++.+.++++....      ....+.     .++..+-.++|+ +.++.|+++-...-..+|.++..          
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            66568999999884321      112222     244568999999 66555555555555566655420          


Q ss_pred             -------cCCCCCeeEEEeccCCCeEEEE
Q 017421          303 -------TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       303 -------~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                             ......+.++.++|....|.+-
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliL  188 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLIL  188 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEE
Confidence                   1233457889999986544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.02  E-value=0.07  Score=47.93  Aligned_cols=143  Identities=18%  Similarity=0.188  Sum_probs=88.9

Q ss_pred             CCEEEEEeC----------CCcEEEEeCCCC----eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421          136 GSLFVAGFQ----------ASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  201 (372)
Q Consensus       136 ~~~l~~~~~----------dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  201 (372)
                      ..+|++|..          .|.|.++++...    ..+ +........++|+++.-- +++ |+++. .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l-~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL-KLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE-EEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEE-EEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc
Confidence            467777643          288999999884    122 222233445688888766 444 44443 478999999887


Q ss_pred             c-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEee--cCCCCeEEEEE
Q 017421          202 T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRIL--AHTSDVNTVCF  277 (372)
Q Consensus       202 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~  277 (372)
                      + .........               ...+.++...  +++|+.|+....+.++..+. ...+..+.  .....++++.+
T Consensus       118 ~~l~~~~~~~~---------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~  180 (321)
T PF03178_consen  118 KTLLKKAFYDS---------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEF  180 (321)
T ss_dssp             SSEEEEEEE-B---------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEE
T ss_pred             ccchhhheecc---------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEE
Confidence            7 333222211               1256666554  56999999888888775443 33233332  23456888888


Q ss_pred             eCCCCCEEEEEeCCCeEEEEecc
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      - .+++.++.+..+|.+.++...
T Consensus       181 l-~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  181 L-VDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             E--SSSEEEEEETTSEEEEEEE-
T ss_pred             e-cCCcEEEEEcCCCeEEEEEEC
Confidence            7 566799999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.98  E-value=0.0035  Score=38.11  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421          227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL  261 (372)
Q Consensus       227 ~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  261 (372)
                      ...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            357999999999999999999999999998 4543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.022  Score=52.53  Aligned_cols=150  Identities=16%  Similarity=0.191  Sum_probs=94.8

Q ss_pred             CCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE-------EEEEeCCCeEEEEECCCCceee
Q 017421          134 ADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-------LVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       134 ~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      .+.++|+ .+..-..++-.|++.|+.+..-.   -+. .|.-+.+.|+.+.       -+.|-.+..|.-||++-.... 
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk---~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-  417 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWK---FED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-  417 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEee---ccC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc-
Confidence            3444443 44444567888888886665522   222 2777777775432       234566888999998844321 


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  285 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l  285 (372)
                      ..   ...++..|..      .....|.+-..+| +|++|+.+|.|++||--..+....+++-..+|..|..+ .+|++|
T Consensus       418 kl---~~~q~kqy~~------k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt-adGKwi  486 (644)
T KOG2395|consen  418 KL---AVVQSKQYST------KNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT-ADGKWI  486 (644)
T ss_pred             ee---eeeecccccc------ccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee-ccCcEE
Confidence            11   1111111211      1245566655555 79999999999999974333444567788899999999 999988


Q ss_pred             EEEeCCCeEEEEecc
Q 017421          286 YSGSDDNLCKVNSVL  300 (372)
Q Consensus       286 ~s~~~dg~i~vwd~~  300 (372)
                      +..+ +..+.+.++.
T Consensus       487 l~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  487 LATC-KTYLLLIDTL  500 (644)
T ss_pred             EEec-ccEEEEEEEe
Confidence            7654 6677777765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.94  E-value=0.057  Score=47.55  Aligned_cols=156  Identities=13%  Similarity=0.173  Sum_probs=78.4

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      .-.+.+..+.-++||++++++.......-|+.-.. ....    ......+|.++.|.|++.+.+.+ ..|.|+.=+...
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~----~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH----NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE----E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE----ccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence            34577888999999999988877555567775432 2222    22234579999999998876654 888888776221


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCCCeEEEEE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCF  277 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~  277 (372)
                      ....-........           .....+..++|.+++...++|+. |.+ +.....|+.=....   .-....+.+.|
T Consensus       217 ~~~~w~~~~~~~~-----------~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f  283 (302)
T PF14870_consen  217 DGETWSEPIIPIK-----------TNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVF  283 (302)
T ss_dssp             EEEEE---B-TTS-----------S--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred             CccccccccCCcc-----------cCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEE
Confidence            1110000000000           01125889999998887776664 543 34444444322222   23456889999


Q ss_pred             eCCCCCEEEEEeCCCeEEEE
Q 017421          278 GDESGHLIYSGSDDNLCKVN  297 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vw  297 (372)
                      . +..+-++. +.+|.|.-|
T Consensus       284 ~-~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  284 V-NPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             E-ETTEEEEE--STTEEEEE
T ss_pred             c-CCCceEEE-CCCcEEEEe
Confidence            7 44444554 478887655

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.94  E-value=0.1  Score=45.09  Aligned_cols=147  Identities=20%  Similarity=0.172  Sum_probs=89.0

Q ss_pred             ceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCC
Q 017421          126 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG  201 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~  201 (372)
                      .+...+++++++.++...   ....+.++.....  .....  .+  ..+...+|++++...+....+....++. ...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            688899999999887665   3345666654433  22211  11  2588889999988777776666666664 3333


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe---CCCeEEEEECC---CC------eEEEEeecCC
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLE---AN------KLSLRILAHT  269 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s---~dg~i~iwd~~---~~------~~~~~~~~~~  269 (372)
                      ......-...             .-...|..+.+||||..++...   .++.|.+--+.   .+      ..........
T Consensus        99 ~~~~~~v~~~-------------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen   99 TGEPVEVDWP-------------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL  165 (253)
T ss_pred             cceeEEeccc-------------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence            3221111000             0111799999999999887655   34677776553   22      1112222334


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCC
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDN  292 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg  292 (372)
                      ..+..+.|. +++.+++.+...+
T Consensus       166 ~~v~~v~W~-~~~~L~V~~~~~~  187 (253)
T PF10647_consen  166 SDVTDVAWS-DDSTLVVLGRSAG  187 (253)
T ss_pred             Ccceeeeec-CCCEEEEEeCCCC
Confidence            688999999 7787777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.93  E-value=0.24  Score=43.28  Aligned_cols=153  Identities=17%  Similarity=0.191  Sum_probs=82.3

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421          134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  213 (372)
Q Consensus       134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  213 (372)
                      ..++.|+.|+.+| +.+++.............    .+|..+...|+-+.+++-+ |+.+.++++..-............
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            4578899999988 899998333222221111    1399999999877776654 599999998765433211100000


Q ss_pred             cccceeccCCCCccccEEEEE--EcCCC-CEEEEEeCCCeEEEEECCCC-----eEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421          214 DGLDFSAADDGGYSFGIFSLK--FSTDG-RELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLI  285 (372)
Q Consensus       214 ~~~~~~~~~~~~h~~~i~~~~--~sp~~-~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~~l  285 (372)
                      ......  ........+...+  -.+.+ ..|+++ ....|.+|.....     +....+. -...+.+++|.   ++.|
T Consensus        79 ~~~~~~--~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i  151 (275)
T PF00780_consen   79 KSRSLP--TKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKI  151 (275)
T ss_pred             cccccc--ccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEE
Confidence            000000  0000111333333  11233 344444 4568888887653     3444444 34678888887   4556


Q ss_pred             EEEeCCCeEEEEecc
Q 017421          286 YSGSDDNLCKVNSVL  300 (372)
Q Consensus       286 ~s~~~dg~i~vwd~~  300 (372)
                      +.|..++ ..+.|+.
T Consensus       152 ~v~~~~~-f~~idl~  165 (275)
T PF00780_consen  152 CVGTSKG-FYLIDLN  165 (275)
T ss_pred             EEEeCCc-eEEEecC
Confidence            6665433 4555554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.92  E-value=0.0039  Score=37.92  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE  154 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  154 (372)
                      ....|.+++|+|..++||.+..+|.|.||.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            35679999999999999999999999999983

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.0044  Score=61.43  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      .+..++.|+..|.+-..|..+.-..  .....             .-..+|++++|+.+|+.++.|-.+|.|.+||+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne-------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNE-------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch--hhcCC-------------ccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            4557888888888888887654110  00000             12359999999999999999999999999999999


Q ss_pred             eEEEEeecCCCCeEEE---EEeCCCCCEEEEEeCCCeEEEEec
Q 017421          260 KLSLRILAHTSDVNTV---CFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~---~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      +.++.+..|..+.+.+   .+. .++..+.++...|.  +|.+
T Consensus       163 k~l~~i~e~~ap~t~vi~v~~t-~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILKVITEHGAPVTGVIFVGRT-SQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceeeeeecCCccceEEEEEEe-CCCcEEEEccCCCc--eEEE
Confidence            9988888777666554   444 45567777777776  6664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.0048  Score=61.19  Aligned_cols=101  Identities=11%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      .+..++.|+..|.+-..|....  +..........++|++++|+.+|+.++.|-.+|.|.+||+..++..........  
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a--  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA--  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence            4667889999999999887754  222233455567999999999999999999999999999998876544432211  


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                                .+. .|..+.+..++..++++...|.
T Consensus       174 ----------p~t-~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  174 ----------PVT-GVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             ----------ccc-eEEEEEEeCCCcEEEEccCCCc
Confidence                      112 3444445555667788777775

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.089  Score=44.91  Aligned_cols=158  Identities=18%  Similarity=0.163  Sum_probs=89.0

Q ss_pred             EECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---------------
Q 017421          131 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---------------  190 (372)
Q Consensus       131 ~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------  190 (372)
                      .|||||.+|.+.-+     -|.|-|||...+  ....-....|.-....+.|.+||+.++.+...               
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence            59999999876533     368999998854  22323345555567889999999999876431               


Q ss_pred             ---CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeEE
Q 017421          191 ---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS  262 (372)
Q Consensus       191 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-----i~iwd~~~~~~~  262 (372)
                         ..+.+.|..+|..+....+...            -+...|..++..+||+.++.+-..|.     -.+=-...++.+
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~------------l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l  265 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPAS------------LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL  265 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchh------------hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence               1222333333333222221111            24457888888888876655433331     111111223333


Q ss_pred             EEee-------cCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc
Q 017421          263 LRIL-------AHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT  303 (372)
Q Consensus       263 ~~~~-------~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~  303 (372)
                      .-+.       .....|-+++.+ .+..+++..+ ..+..-+||..+..
T Consensus       266 ~~~~~pee~~~~~anYigsiA~n-~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         266 EFLDLPEEQTAAFANYIGSIAAN-RRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             cccCCCHHHHHHHHhhhhheeec-ccCCeEEEecCCCCeEEEEEcCCCc
Confidence            2222       123466778887 4444444444 55667889988643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.84  E-value=0.023  Score=51.80  Aligned_cols=103  Identities=17%  Similarity=0.215  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEeC---------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421          178 SPDQRHLVYASM---------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  248 (372)
Q Consensus       178 ~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d  248 (372)
                      |||+++++....         .+.+.+||+.++....+...                 ...+....|+|+|+.++... +
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----------------~~~~~~~~~sP~g~~~~~v~-~   62 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----------------PPKLQDAKWSPDGKYIAFVR-D   62 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----------------ETTBSEEEE-SSSTEEEEEE-T
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----------------ccccccceeecCCCeeEEEe-c
Confidence            577777776422         46789999999876555442                 12678899999999999886 5


Q ss_pred             CeEEEEECCCCeEEEEee-cC----------------CCCeEEEEEeCCCCCEEEEEeC-CCeEEEEec
Q 017421          249 DCIYVYDLEANKLSLRIL-AH----------------TSDVNTVCFGDESGHLIYSGSD-DNLCKVNSV  299 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~-~~----------------~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~  299 (372)
                      +.|.+++..++...+.-. +.                -+.-..+-|| ||+++|+.... +..|+.+.+
T Consensus        63 ~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   63 NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEE
T ss_pred             CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEe
Confidence            889999988775432211 20                1123568899 99999887754 344555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.80  E-value=0.37  Score=43.63  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=90.4

Q ss_pred             EECCCCCEEEEEeC-C--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          131 QFSADGSLFVAGFQ-A--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       131 ~~s~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      +|.+||+.|+.++. |  ..+.+.|+.+++..+- ..  +.........++|+.+.++.......|...|+++.+...+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-Td--g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-TD--GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC-cc--CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            68899977766544 4  4677888888854432 11  11122335677888888877766778999999998876665


Q ss_pred             ceeecccccceeccCCCCccccEEEEEE--cCCCCEEEEEe----------------------CCCeEEEEECCCCeEEE
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS----------------------SDDCIYVYDLEANKLSL  263 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~  263 (372)
                      .....                .+-...|  +.|+..++-.-                      -...|.-.|+++|+...
T Consensus       119 ~~p~~----------------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~  182 (386)
T PF14583_consen  119 EVPDD----------------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV  182 (386)
T ss_dssp             E--TT----------------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred             ECCcc----------------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence            54432                2222333  34555543221                      12246666888887644


Q ss_pred             EeecCCCCeEEEEEeCCCCCEEEEEeC---CCe-EEEEecccc-------cC--CCCCeeEEEeccCCCeEE
Q 017421          264 RILAHTSDVNTVCFGDESGHLIYSGSD---DNL-CKVNSVLLL-------TR--SINPCNKYLFNPCNKYLI  322 (372)
Q Consensus       264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~-i~vwd~~~~-------~~--~~~~v~~~~~s~~g~~l~  322 (372)
                      .+. ....+..+.|+|.+..+|+-|-+   +.. -|||-+++-       ..  ....+.-=-|.|||..|.
T Consensus       183 v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  183 VFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             EEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             EEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            444 45678899999888888888643   332 367766521       11  122344456778877665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.68  E-value=0.5  Score=43.29  Aligned_cols=193  Identities=11%  Similarity=-0.021  Sum_probs=90.9

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCCe---EEEEeeec-----ccCCcceEEEEECCCCCEEEEEeC------CCeEEEEECC
Q 017421          135 DGSLFVAGF-QASQIRIYDVERGW---KIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASM------SPIVHIVDVG  199 (372)
Q Consensus       135 ~~~~l~~~~-~dg~i~vwd~~~~~---~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~  199 (372)
                      +.++|+..+ ..+.|+|+|+.+..   .+.+.+..     +..-.....+.--|+|+.++++-.      .|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            566777665 67899999998532   33332221     011123445555678988887532      3467788887


Q ss_pred             CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCC
Q 017421          200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN  259 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--------------------~dg~i~iwd~~~~  259 (372)
                      +............             ....-..+-|.|..+.++++.                    ...++.+||+.+.
T Consensus       166 tf~v~g~We~~~~-------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r  232 (461)
T PF05694_consen  166 TFEVKGRWEKDRG-------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR  232 (461)
T ss_dssp             T--EEEE--SB-T-------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred             cccccceeccCCC-------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence            7665444332211             122455677888888888764                    2357999999999


Q ss_pred             eEEEEeecCCC--CeEEEEEe-CCCCCE-EEEEeCCCeEEEEec-c----------ccc----------C-------CCC
Q 017421          260 KLSLRILAHTS--DVNTVCFG-DESGHL-IYSGSDDNLCKVNSV-L----------LLT----------R-------SIN  307 (372)
Q Consensus       260 ~~~~~~~~~~~--~v~~~~~s-p~~~~~-l~s~~~dg~i~vwd~-~----------~~~----------~-------~~~  307 (372)
                      +.++++.--..  .+..+.|. .|+..+ ++.+.-..+|-.|-. .          .+.          .       ...
T Consensus       233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~  312 (461)
T PF05694_consen  233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP  312 (461)
T ss_dssp             EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred             cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence            99999874332  34567775 133333 333334444444322 1          000          0       134


Q ss_pred             CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          308 PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       308 ~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      -|+.+..|.|.++|..+.     --++.++.+|+..-.
T Consensus       313 LitDI~iSlDDrfLYvs~-----W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSN-----WLHGDVRQYDISDPF  345 (461)
T ss_dssp             ----EEE-TTS-EEEEEE-----TTTTEEEEEE-SSTT
T ss_pred             ceEeEEEccCCCEEEEEc-----ccCCcEEEEecCCCC
Confidence            579999999999999884     125888888886643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.45  Score=40.83  Aligned_cols=204  Identities=11%  Similarity=0.086  Sum_probs=109.3

Q ss_pred             CCceEEEEECCCC-CEEEEEeCCCc-EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCeEEEE
Q 017421          124 TSRAYVSQFSADG-SLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIV  196 (372)
Q Consensus       124 ~~~v~~~~~s~~~-~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vw  196 (372)
                      +..-..|+|+|.- +-++.+-.-|+ ..++|....+.+....... ...-.-.-.|+|||.+|...-.     .|.|-||
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-CceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence            4445567788854 34555555444 5688888765544332221 1112334579999998876533     3789999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-------C-----------eEEEEECCC
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------D-----------CIYVYDLEA  258 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-------g-----------~i~iwd~~~  258 (372)
                      |.+.+- ..+-++.              +|.-....+.|.+||+.++.+...       |           ++.+.|-.+
T Consensus       146 d~r~~f-qrvgE~~--------------t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at  210 (366)
T COG3490         146 DAREGF-QRVGEFS--------------THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT  210 (366)
T ss_pred             eccccc-ceecccc--------------cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence            987432 1222111              244466778999999998876420       1           122333334


Q ss_pred             CeEEEEe--e--cCCCCeEEEEEeCCCCCEEEEEeCCCe----------------EEEEecc--cccCCCCCeeEEEecc
Q 017421          259 NKLSLRI--L--AHTSDVNTVCFGDESGHLIYSGSDDNL----------------CKVNSVL--LLTRSINPCNKYLFNP  316 (372)
Q Consensus       259 ~~~~~~~--~--~~~~~v~~~~~sp~~~~~l~s~~~dg~----------------i~vwd~~--~~~~~~~~v~~~~~s~  316 (372)
                      |+.+.+.  .  .+.-.|..++.. +||..++-+-..|-                +...++.  +......-|-+++.+.
T Consensus       211 G~liekh~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~  289 (366)
T COG3490         211 GNLIEKHTLPASLRQLSIRHLDIG-RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR  289 (366)
T ss_pred             cchhhhccCchhhhhcceeeeeeC-CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence            4332221  1  233456777776 77776665533221                1111111  0002223456667666


Q ss_pred             CCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          317 CNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      +..+++..+.     --+...+||..+|..+..
T Consensus       290 ~~glV~lTSP-----~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         290 RDGLVALTSP-----RGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             cCCeEEEecC-----CCCeEEEEEcCCCcEEec
Confidence            5555554431     124556899999887654

>PHA02713 hypothetical protein; Provisional

Probab=96.45  E-value=0.34  Score=47.06  Aligned_cols=197  Identities=10%  Similarity=0.027  Sum_probs=98.8

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----eEEEEECCCCce
Q 017421          135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM  203 (372)
Q Consensus       135 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~  203 (372)
                      ++..+++|+.+      ..+..||..++.-... ............+.+  +++..+.|+.++     .+..||..+..-
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~-~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL-PPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeC-CCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            56677777753      3477888877632111 111111111222222  577778887654     478899887754


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----------------------CeEEEEECCCCe
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------------------DCIYVYDLEANK  260 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----------------------g~i~iwd~~~~~  260 (372)
                      ...........              ....+.  -+|+..+.|+.+                       ..+..||..+++
T Consensus       380 ~~~~~mp~~r~--------------~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~  443 (557)
T PHA02713        380 KMLPDMPIALS--------------SYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI  443 (557)
T ss_pred             EECCCCCcccc--------------cccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence            33322221110              111122  256666777654                       247788887764


Q ss_pred             E--EEEeecCCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEeccc-cc-----CCCCC--eeEEEeccCCCeEEEE
Q 017421          261 L--SLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVNSVLL-LT-----RSINP--CNKYLFNPCNKYLIIY  324 (372)
Q Consensus       261 ~--~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d------g~i~vwd~~~-~~-----~~~~~--v~~~~~s~~g~~l~~~  324 (372)
                      -  +..+...... .+++.  -++++.+.|+.+      ..+..||..+ -.     ....+  ..+++. -+|+..++|
T Consensus       444 W~~v~~m~~~r~~-~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~G  519 (557)
T PHA02713        444 WETLPNFWTGTIR-PGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLH  519 (557)
T ss_pred             EeecCCCCccccc-CcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEe
Confidence            3  2222111111 22333  367777777754      2366788775 22     11101  111221 245655555


Q ss_pred             e-ee--eEEEeeceEEEeecccceEEEEEeeeE
Q 017421          325 L-IL--VISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       325 ~-~~--~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      . ++  .+..||..-.-|..-..+.-.++.+|.
T Consensus       520 g~~~~~~~e~yd~~~~~W~~~~~~~~~~~~~~~  552 (557)
T PHA02713        520 CYESYMLQDTFNVYTYEWNHICHQHSNSYIMHN  552 (557)
T ss_pred             eecceeehhhcCcccccccchhhhcCCceEeec
Confidence            3 22  355566666677666666666666664

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.42  E-value=0.11  Score=48.82  Aligned_cols=101  Identities=11%  Similarity=0.096  Sum_probs=62.9

Q ss_pred             cEEEEEEcCCC----CEEEEEeCCCeEEEEECCC-----CeEEEEeec-CCC----CeEEEEEeCCCCCEEEEEeCCCeE
Q 017421          229 GIFSLKFSTDG----RELVAGSSDDCIYVYDLEA-----NKLSLRILA-HTS----DVNTVCFGDESGHLIYSGSDDNLC  294 (372)
Q Consensus       229 ~i~~~~~sp~~----~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~-~~~----~v~~~~~sp~~~~~l~s~~~dg~i  294 (372)
                      .|..+.|.|-+    ..+++..-...|.||.+.-     ++.+..... ...    -...+.|+ |....|++-.....-
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence            68999999852    2344445568899999852     222222111 111    12457899 777777766555444


Q ss_pred             EEEeccc----c---cCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          295 KVNSVLL----L---TRSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       295 ~vwd~~~----~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      .+++++.    .   -...+.|.+.+|.+||+.|+++.+..+.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLH  179 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLH  179 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEE
Confidence            4555541    1   1456789999999999999988655443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.40  E-value=0.67  Score=44.30  Aligned_cols=150  Identities=15%  Similarity=0.195  Sum_probs=87.4

Q ss_pred             EEECCCCCEEEEEeCCC------------------cEEEEeCCCCeEEEEeeecccCCc---ceEEEEEC----CCCC--
Q 017421          130 SQFSADGSLFVAGFQAS------------------QIRIYDVERGWKIQKDILAKSLRW---TVTDTSLS----PDQR--  182 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~----~~~~--  182 (372)
                      .++.+.+..+++++.++                  .|.-+|..+++.............   ......+.    -++.  
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~  301 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV  301 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence            45555667777776555                  689999999977765432211000   00000111    1333  


Q ss_pred             -EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE-----------------
Q 017421          183 -HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-----------------  244 (372)
Q Consensus       183 -~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-----------------  244 (372)
                       .++.++.+|.+...|.++|+.+-......                   ..++.+| + .++.                 
T Consensus       302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-------------------~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~  360 (488)
T cd00216         302 PAIVHAPKNGFFYVLDRTTGKLISARPEVE-------------------QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRC  360 (488)
T ss_pred             EEEEEECCCceEEEEECCCCcEeeEeEeec-------------------cccccCC-c-eEEEccccccccCcccccCCC
Confidence             57778889999999999998754433210                   1122223 1 1221                 


Q ss_pred             -EeCCCeEEEEECCCCeEEEEeecCC--------CCe--EEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421          245 -GSSDDCIYVYDLEANKLSLRILAHT--------SDV--NTVCFGDESGHLIYSGSDDNLCKVNSVLLLT  303 (372)
Q Consensus       245 -~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~  303 (372)
                       ...+|.+.-.|+.+++.+.+.....        .+.  ..+.   ..+..++.++.||.|+.+|.++.+
T Consensus       361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~---~~g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA---TAGNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE---ecCCeEEEECCCCeEEEEECCCCc
Confidence             1235778888988888776655320        111  1122   245788888899999999987543

The alignment model contains an 8-bladed beta-propeller.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.36  E-value=0.59  Score=40.36  Aligned_cols=134  Identities=11%  Similarity=0.100  Sum_probs=85.0

Q ss_pred             ceEEEEECCCCCEEEEEe---CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          171 TVTDTSLSPDQRHLVYAS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                      .+.+.+++++++.++...   ....+.++..........    .             +  ..+....|++++...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~-------------g--~~l~~PS~d~~g~~W~v~~~   85 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----T-------------G--GSLTRPSWDPDGWVWTVDDG   85 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----c-------------C--CccccccccCCCCEEEEEcC
Confidence            588999999999887766   334565655443222111    0             0  16777899999887777666


Q ss_pred             CCeEEEEE-CCCCeEE-EEeec--CCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccc---------------ccCC
Q 017421          248 DDCIYVYD-LEANKLS-LRILA--HTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLL---------------LTRS  305 (372)
Q Consensus       248 dg~i~iwd-~~~~~~~-~~~~~--~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~---------------~~~~  305 (372)
                      +...+++. ..++... ..+..  -...|..+.+| +||..++...   .++.|.+--+..               ....
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~  164 (253)
T PF10647_consen   86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL  164 (253)
T ss_pred             CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence            66666663 3333321 12221  11289999999 9999887665   346666654431               1123


Q ss_pred             CCCeeEEEeccCCCeEEEE
Q 017421          306 INPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       306 ~~~v~~~~~s~~g~~l~~~  324 (372)
                      ...+..+.|.+++.+++.+
T Consensus       165 ~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  165 LSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             cCcceeeeecCCCEEEEEe
Confidence            4578999999999887766

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.34  E-value=0.67  Score=40.92  Aligned_cols=178  Identities=17%  Similarity=0.115  Sum_probs=85.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      ....+....++..++++ ..|.  ||... .+..-....  ......+..+.-++||++++++..-..+.-||.....-.
T Consensus       105 s~~~i~~l~~~~~~l~~-~~G~--iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~  179 (302)
T PF14870_consen  105 SPFGITALGDGSAELAG-DRGA--IYRTTDGGKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ  179 (302)
T ss_dssp             -EEEEEEEETTEEEEEE-TT----EEEESSTTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E
T ss_pred             CeeEEEEcCCCcEEEEc-CCCc--EEEeCCCCCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccce
Confidence            33444444444444443 3354  34333 333332222  233356888999999998888876555667776433222


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeEEEE--ee--cCCCCeEEEEEeC
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLR--IL--AHTSDVNTVCFGD  279 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~-~~~~~~~~--~~--~~~~~v~~~~~sp  279 (372)
                      ....                .-...|..|.|.|++.+.+.+ ..|.|+.=+. ...+.-..  ..  ...-.+..++|. 
T Consensus       180 ~~~r----------------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~-  241 (302)
T PF14870_consen  180 PHNR----------------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR-  241 (302)
T ss_dssp             EEE------------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES-
T ss_pred             EEcc----------------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEec-
Confidence            1111                112389999999998876655 7788887762 22221111  11  122347889998 


Q ss_pred             CCCCEEEEEeCCCeEEE-------Eecc-cccCCCCCeeEEEeccCCCeEEEEeee
Q 017421          280 ESGHLIYSGSDDNLCKV-------NSVL-LLTRSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~v-------wd~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      +++...++| ..|.+.+       |... .........+.+.|.++.+-++.+.++
T Consensus       242 ~~~~~wa~g-g~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  242 PPNEIWAVG-GSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             SSS-EEEEE-STT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             CCCCEEEEe-CCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            666666655 4555443       2211 223445678999998888888888533

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.32  E-value=0.0022  Score=62.26  Aligned_cols=177  Identities=12%  Similarity=0.023  Sum_probs=95.4

Q ss_pred             ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC--CeEEEEe--eecccCCcceEEEEECC---CCCEEEEEeC
Q 017421          118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER--GWKIQKD--ILAKSLRWTVTDTSLSP---DQRHLVYASM  189 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~--~~~~~~~--~~~~~~~~~v~~~~~~~---~~~~l~~~~~  189 (372)
                      ..+++.++.|..+.|.. +-..++  -.-|.+.||++.-  |+....+  ........++.-+.|.|   +.-++.++-.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            34678899999999854 323333  2336788998753  3221111  11222233456667766   5667777888


Q ss_pred             CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCeEEEE
Q 017421          190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-----ANKLSLR  264 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-----~~~~~~~  264 (372)
                      ++.+++..+.................+.|-.      .+.+.--..+|||+.++.+..||.++.|.+.     .-.++..
T Consensus       204 ~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~------~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe  277 (1283)
T KOG1916|consen  204 GGEIRLLNINRALRSLFRSHSQRVTDMAFFA------EGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE  277 (1283)
T ss_pred             CCceeEeeechHHHHHHHhcCCCcccHHHHh------hchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence            8898888776543211110000000000000      0011112378999999999999988877653     3346666


Q ss_pred             eecCCC-CeEEEEEeCCC-------C--CEEEEEe-CCCeEEEEeccccc
Q 017421          265 ILAHTS-DVNTVCFGDES-------G--HLIYSGS-DDNLCKVNSVLLLT  303 (372)
Q Consensus       265 ~~~~~~-~v~~~~~sp~~-------~--~~l~s~~-~dg~i~vwd~~~~~  303 (372)
                      .+.|.+ +-.|.-++ ..       +  .++++++ .+..+++|.-..++
T Consensus       278 wkphd~~p~vC~lc~-~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  278 WKPHDKHPRVCWLCH-KQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ  326 (1283)
T ss_pred             cCCCCCCCceeeeec-cccccCCccceeEEEEecccCCcceeEeeccchh
Confidence            677763 33333333 11       1  1334443 34568888865444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.25  E-value=1.2  Score=42.72  Aligned_cols=116  Identities=21%  Similarity=0.269  Sum_probs=65.4

Q ss_pred             CCCcEEEEeCCCCeEEEEeeecccCC-----------------cce-EEEEECCCCCEEEEEeCCC--------------
Q 017421          144 QASQIRIYDVERGWKIQKDILAKSLR-----------------WTV-TDTSLSPDQRHLVYASMSP--------------  191 (372)
Q Consensus       144 ~dg~i~vwd~~~~~~~~~~~~~~~~~-----------------~~v-~~~~~~~~~~~l~~~~~dg--------------  191 (372)
                      .++.+..+|..+++.+.+........                 ..+ ....+.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            36788999999887666543321100                 001 1244555566777777655              


Q ss_pred             ----eEEEEECCCCceeeecceeecccccceeccCCCCccccE-EEEEEcCCCC---EEEEEeCCCeEEEEECCCCeEEE
Q 017421          192 ----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI-FSLKFSTDGR---ELVAGSSDDCIYVYDLEANKLSL  263 (372)
Q Consensus       192 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~sp~~~---~l~s~s~dg~i~iwd~~~~~~~~  263 (372)
                          .|.-+|.++|+..-...... +....+.     +...++ ..+. .-++.   .++.++.+|.+...|.++|+.+.
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~-----~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTP-HDLWDYD-----GPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCC-CCCcccc-----cCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence                78999999998754443211 0000000     011111 1111 11333   57788889999999999999877


Q ss_pred             Eee
Q 017421          264 RIL  266 (372)
Q Consensus       264 ~~~  266 (372)
                      ...
T Consensus       326 ~~~  328 (488)
T cd00216         326 ARP  328 (488)
T ss_pred             EeE
Confidence            654

The alignment model contains an 8-bladed beta-propeller.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.07  E-value=0.43  Score=43.78  Aligned_cols=154  Identities=16%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             CceEEEEECCCCCEEEEEe-----------CCC-cEEEEeCCCC--eEEEEeeecccCCcceEEEEECCCCCEEEEEeCC
Q 017421          125 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS  190 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  190 (372)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++  ..........+ -.....+++.+++ +++ +...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC-EEE-eCCC
Confidence            4567789999999877643           223 6777765432  21111122222 2246889999988 444 4444


Q ss_pred             CeEEEEECCCCceee--ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-------------------CC
Q 017421          191 PIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------------DD  249 (372)
Q Consensus       191 g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-------------------dg  249 (372)
                      ...++.|........  ...+..   ++.  .. ...+....+.+.|.|||.+.++-+.                   .|
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~---~~~--~~-~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g  164 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLS---GFG--GQ-INNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG  164 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEE---ccC--CC-CCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence            333343543221100  000100   000  00 0012335788999999987664441                   14


Q ss_pred             eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421          250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                      .|..+|...++.. .+...-.....++|+ ++|+++++-.
T Consensus       165 ~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d-~~G~l~~tdn  202 (367)
T TIGR02604       165 GLFRYNPDGGKLR-VVAHGFQNPYGHSVD-SWGDVFFCDN  202 (367)
T ss_pred             eEEEEecCCCeEE-EEecCcCCCccceEC-CCCCEEEEcc
Confidence            4666666655432 222223445789999 7898877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.00  E-value=0.023  Score=46.72  Aligned_cols=69  Identities=3%  Similarity=0.003  Sum_probs=42.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      +..+++|+.+|.|.+|............ ..........+.-..++.+..+++.+|.|+.|++.-++...
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g  138 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG  138 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh-hcccccceeccccccccceeEEeccCCceeeeccccCceee
Confidence            4568899999999999887321111100 11111112223333356688889999999999998776533

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.98  E-value=0.44  Score=46.24  Aligned_cols=107  Identities=9%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEe-CCCCCEEEEEeCCCeEEEEecc-------
Q 017421          230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG-DESGHLIYSGSDDNLCKVNSVL-------  300 (372)
Q Consensus       230 i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~~l~s~~~dg~i~vwd~~-------  300 (372)
                      +.-+.-+.-++.-++.+....+.|||.+.+.....-. ...+.|.++.|. .|+++.+++.+..+.|.+|--.       
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3344444444444444445679999999887543332 456789999995 3788888888899999887532       


Q ss_pred             ----------cccCCC-CCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421          301 ----------LLTRSI-NPCNKYLFNPCNKYLIIYLILVISIYSPNIL  337 (372)
Q Consensus       301 ----------~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~  337 (372)
                                .+..++ .+|.+..|-++|.+++ +++..+-++|..+.
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~~~  158 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKWLD  158 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECCCcC
Confidence                      011333 6788999999987655 55566677776655

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.88  E-value=1  Score=40.82  Aligned_cols=112  Identities=18%  Similarity=0.121  Sum_probs=52.6

Q ss_pred             CCCccccCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421          115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      .....+..-...+..+.|+|...-+++=|..|     .-+||-++.................+..=-|.|||..|..-+.
T Consensus       178 G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~  257 (386)
T PF14583_consen  178 GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY  257 (386)
T ss_dssp             --EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred             CceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence            33444444566778889999655444433322     1255655432211121112222345677789999998776433


Q ss_pred             -----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          190 -----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       190 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                           +..|.-+|+.+++........                  ....+--++||++++-
T Consensus       258 ~~~~~~~~i~~~d~~t~~~~~~~~~p------------------~~~H~~ss~Dg~L~vG  299 (386)
T PF14583_consen  258 TPGGQDFWIAGYDPDTGERRRLMEMP------------------WCSHFMSSPDGKLFVG  299 (386)
T ss_dssp             ETTT--EEEEEE-TTT--EEEEEEE-------------------SEEEEEE-TTSSEEEE
T ss_pred             cCCCCceEEEeeCCCCCCceEEEeCC------------------ceeeeEEcCCCCEEEe
Confidence                 335777788877654332211                  3344555788887764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.78  E-value=1.1  Score=38.66  Aligned_cols=160  Identities=14%  Similarity=0.208  Sum_probs=98.2

Q ss_pred             EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcc
Q 017421          148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS  227 (372)
Q Consensus       148 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  227 (372)
                      .-+|..+-...+.... ..+....+.+++|+|+.+.|++....+.-.|+=...|.......+...               
T Consensus        65 ~~~~l~~y~~~i~akp-i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~---------------  128 (316)
T COG3204          65 IARYLLEYRARIDAKP-ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF---------------  128 (316)
T ss_pred             hhhccCCceEEEeccc-cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc---------------
Confidence            4556554332222211 223344599999999999998888877777777777777655554322               


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-----ee----cC-CCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-----IL----AH-TSDVNTVCFGDESGHLIYSGSDDNLCKVN  297 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~----~~-~~~v~~~~~sp~~~~~l~s~~~dg~i~vw  297 (372)
                      ...-.|.+..+|++.++--.++.+.++.+..+..+..     +.    .+ +.....++|. +..+.|+.+-+..=+.||
T Consensus       129 ~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~  207 (316)
T COG3204         129 SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIF  207 (316)
T ss_pred             CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEE
Confidence            1455677777787777777788888887765532111     11    12 4567789999 666666666566657777


Q ss_pred             eccccc---------C-------CCCCeeEEEeccCCCeEEEE
Q 017421          298 SVLLLT---------R-------SINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       298 d~~~~~---------~-------~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .+....         .       .-..|.++.|.+....|.+-
T Consensus       208 ~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL  250 (316)
T COG3204         208 EVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL  250 (316)
T ss_pred             EEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence            654111         1       11346778888765544443

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.78  E-value=0.12  Score=50.16  Aligned_cols=97  Identities=14%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             cEEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---------
Q 017421          229 GIFSLKFSTDGRELVAGS------SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---------  291 (372)
Q Consensus       229 ~i~~~~~sp~~~~l~s~s------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---------  291 (372)
                      .+...+++|+|+.++...      .|.  .|.+++... .. ..+.. ....+...|+ |+|..|++....         
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWs-pDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWS-LDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceEC-CCCCceEEEecCcceEEEecc
Confidence            678889999999887654      233  566666532 22 23322 2247889999 888877665422         


Q ss_pred             ---CeEEEEeccccc---CCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421          292 ---NLCKVNSVLLLT---RSINPCNKYLFNPCNKYLIIYLILVI  329 (372)
Q Consensus       292 ---g~i~vwd~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~  329 (372)
                         +.+.+.+++...   .....|.++.|||||..++...++.+
T Consensus       427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v  470 (591)
T PRK13616        427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKV  470 (591)
T ss_pred             CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEE
Confidence               234433443222   23567999999999999987654433

>PRK13684 Ycf48-like protein; Provisional

Probab=95.66  E-value=1.6  Score=39.48  Aligned_cols=155  Identities=12%  Similarity=0.069  Sum_probs=84.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...+.++.+.|++.+++++.. |.+..-.-..++.....  .......++++.+.++++.++++ ..|.+.+=..+.+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            567889999999887766654 54432211222222221  22334468999999999877765 457664322333332


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCCCeEEEEEeCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDE  280 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~  280 (372)
                      -........            .....+..+.+.|++..++++ .+|.+. .....++.-....   .-....+.+.|. .
T Consensus       248 W~~~~~~~~------------~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~-~  312 (334)
T PRK13684        248 WSKPIIPEI------------TNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL-D  312 (334)
T ss_pred             cccccCCcc------------ccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe-C
Confidence            111111000            011257888999988766655 456554 3344333222221   122357788887 5


Q ss_pred             CCCEEEEEeCCCeEEEEe
Q 017421          281 SGHLIYSGSDDNLCKVNS  298 (372)
Q Consensus       281 ~~~~l~s~~~dg~i~vwd  298 (372)
                      +++.+++ +..|.|.-|+
T Consensus       313 ~~~~~~~-G~~G~il~~~  329 (334)
T PRK13684        313 PEKGFVL-GQRGVLLRYV  329 (334)
T ss_pred             CCceEEE-CCCceEEEec
Confidence            5555554 4778877665

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.66  E-value=0.68  Score=43.80  Aligned_cols=153  Identities=12%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             CCceEEEEECCCCCEEE-EEe--CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC----CCEEEEEeCCCeEEEE
Q 017421          124 TSRAYVSQFSADGSLFV-AGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIV  196 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~-~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~vw  196 (372)
                      -.++.+++|. ||+.++ +.-  .+|.+++=|..   .+.+   + .   -|.++.|.|-    ...++.......|.||
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGq---F-E---hV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQ---F-E---HVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeec---c-c---eeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            4578899996 565544 331  23333332211   1111   1 1   3899999993    3345555667889999


Q ss_pred             ECCCCceeeecce----eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCC
Q 017421          197 DVGSGTMESLANV----TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTS  270 (372)
Q Consensus       197 d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~  270 (372)
                      .+.........-+    .+..+.          ..--...+.|+|....|++-+....-.++++....  ....+ ...+
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~----------~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G  156 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREP----------FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSG  156 (671)
T ss_pred             EeccCccccccceeeeeeeccCC----------cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCc
Confidence            9863222111110    111000          00012346799998888776655544566665433  33334 3557


Q ss_pred             CeEEEEEeCCCCCEEEEEeCC-CeEEEEec
Q 017421          271 DVNTVCFGDESGHLIYSGSDD-NLCKVNSV  299 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~d-g~i~vwd~  299 (372)
                      -|.|.+|. .||+.|+++-.. =.-++||-
T Consensus       157 ~IhCACWT-~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  157 LIHCACWT-KDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eEEEEEec-CcCCEEEEEeCCeEEEEEecC
Confidence            89999999 899988776433 33567874

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.61  E-value=1.3  Score=38.04  Aligned_cols=176  Identities=15%  Similarity=0.120  Sum_probs=97.4

Q ss_pred             CceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          125 SRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      .-..++.|..+|.++-+.+.-|  .|+.+|+.+++...........  ---.++.. +++.....=.++...+||..+-+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence            3456788877888877777666  7999999998766544333221  11233333 23344444568899999999876


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--C---CCeEEEEE
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--T---SDVNTVCF  277 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~  277 (372)
                      ........  .               .=..++  .|++.|+.+.....++.+|..+.+....+.-.  .   ..++.+.|
T Consensus       122 ~~~~~~y~--~---------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~  182 (264)
T PF05096_consen  122 KIGTFPYP--G---------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY  182 (264)
T ss_dssp             EEEEEE-S--S---------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred             EEEEEecC--C---------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence            65443322  1               223444  46777887777788999999887666555421  1   23445555


Q ss_pred             eCCCCCEEEEEeCCCeEEEE-----------eccccc----------CCCCCeeEEEeccCCCeEEEE
Q 017421          278 GDESGHLIYSGSDDNLCKVN-----------SVLLLT----------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vw-----------d~~~~~----------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      -  +|.+.|=.=....|...           |+..+.          ....-.+.++|.|.++.+.+.
T Consensus       183 i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  183 I--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             E--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             E--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            4  45444433333333333           443221          113456899999886655443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.48  E-value=0.054  Score=31.92  Aligned_cols=32  Identities=16%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             CCeEEEEEeCCCC--CEEEEEeCCCeEEEEeccc
Q 017421          270 SDVNTVCFGDESG--HLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       270 ~~v~~~~~sp~~~--~~l~s~~~dg~i~vwd~~~  301 (372)
                      +.|.++.|+|..+  .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999996566  7999998999999999984

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.42  E-value=0.24  Score=50.12  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=90.1

Q ss_pred             ceEEEEECCCCCEEEEEeC--CCeEEEEECCCCceeeecce-eecccccceeccCCCCccccEEEEEEcCCCC-EEEEEe
Q 017421          171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANV-TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS  246 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s  246 (372)
                      ++..+...+|+...++...  +-.|..||+++-........ ........+.      ...-..++.|+|.-. ..+...
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~e------k~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFE------KPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhc------cccccccccccCCccchhhhhc
Confidence            4666667778766554433  34789999876443211110 0000000000      112456788888532 235556


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----cc----CCCCCeeEEEeccC
Q 017421          247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LT----RSINPCNKYLFNPC  317 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~----~~~~~v~~~~~s~~  317 (372)
                      .|+.|++..+........--.-....++++|+ |.|+.++.|-..|++.-|...-     +.    .....|.+++|-..
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence            68888888775433221111245678999999 9999999999999998887541     11    22467899999988


Q ss_pred             CCeEEEEe
Q 017421          318 NKYLIIYL  325 (372)
Q Consensus       318 g~~l~~~~  325 (372)
                      ..++++..
T Consensus       255 ~eflvvy~  262 (1405)
T KOG3630|consen  255 QEFLVVYG  262 (1405)
T ss_pred             eeEEEEec
Confidence            88887764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.35  E-value=0.49  Score=45.92  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=70.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      +.-+.-+.-++.-++-+....+.|||...+........  .....|.++.|.  |+++.+++.+....|.+|--......
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            33344444455444444456899999998864444332  335579999886  58999999999999999864211100


Q ss_pred             eecceeecccccceeccCCCCcc-ccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          205 SLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      ...........+...     .|+ .+|.+..|.++|.+++.+  +..+.|+|-.
T Consensus       110 ~~~p~w~~i~~i~i~-----~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDIS-----SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEee-----cCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            000000000011111     111 378999999999655543  3668888643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.35  E-value=0.88  Score=44.28  Aligned_cols=151  Identities=17%  Similarity=0.126  Sum_probs=82.3

Q ss_pred             EEEEECCCCCEEEEEeCC------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----eEEEE
Q 017421          128 YVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIV  196 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw  196 (372)
                      .+++.. ++...++|+.|      .++..||..+++-.. .......+.......+  +|...++|+.||     .+..|
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE--CCEEEEEeccccccccccEEEe
Confidence            334443 45777888888      357788887764221 1111111111111222  678888898886     47788


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCeE--EEEeecC
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------CIYVYDLEANKL--SLRILAH  268 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg------~i~iwd~~~~~~--~~~~~~~  268 (372)
                      |..+.+...........              .....+.  -+|...++|+.++      ++..||..+++-  +..+..-
T Consensus       402 Dp~~~~W~~va~m~~~r--------------~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~  465 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLTRR--------------SGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR  465 (571)
T ss_pred             cCCCCcccccCCCCcce--------------eeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence            88777643333221110              1122222  2477778887554      478888877653  2222211


Q ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCe-----EEEEeccc
Q 017421          269 TSDVNTVCFGDESGHLIYSGSDDNL-----CKVNSVLL  301 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s~~~dg~-----i~vwd~~~  301 (372)
                      ... ..++.  -++.+.+.|+.|+.     |..||..+
T Consensus       466 R~~-~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  466 RSG-FGVAV--LNGKIYVVGGFDGTSALSSVERYDPET  500 (571)
T ss_pred             ccc-ceEEE--ECCEEEEECCccCCCccceEEEEcCCC
Confidence            111 22444  36888888887763     66777763

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.35  E-value=1.7  Score=37.83  Aligned_cols=124  Identities=15%  Similarity=0.086  Sum_probs=74.5

Q ss_pred             CCCEEEEEeCCCeEEEEECC-CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          180 DQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      .++.|+.|+.+| +.+++.. ........                  +...|..+...|+-+.+++-+ |+.+.++++..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~   65 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS   65 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe------------------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence            578899999998 8999982 22221111                  122588999989877777766 59999999876


Q ss_pred             CeEEEE--------------eecCCCCeEEEE-EeCCCCCEEEEEeCCCeEEEEecccc-----c-----CCCCCeeEEE
Q 017421          259 NKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVNSVLLL-----T-----RSINPCNKYL  313 (372)
Q Consensus       259 ~~~~~~--------------~~~~~~~v~~~~-~sp~~~~~l~s~~~dg~i~vwd~~~~-----~-----~~~~~v~~~~  313 (372)
                      -.....              .......+...+ -.+..+...+......+|.+|.....     .     .....+..++
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~  145 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIA  145 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEE
Confidence            543321              111233455555 11233433333445558888887532     1     2345678888


Q ss_pred             eccCCCeEEEEe
Q 017421          314 FNPCNKYLIIYL  325 (372)
Q Consensus       314 ~s~~g~~l~~~~  325 (372)
                      |.  ++.++.+.
T Consensus       146 ~~--~~~i~v~~  155 (275)
T PF00780_consen  146 FL--GNKICVGT  155 (275)
T ss_pred             Ee--CCEEEEEe
Confidence            88  45565553

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA03098 kelch-like protein; Provisional

Probab=95.31  E-value=1.3  Score=42.97  Aligned_cols=146  Identities=12%  Similarity=0.085  Sum_probs=71.9

Q ss_pred             CCCCEEEEEeCCC------cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc
Q 017421          134 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT  202 (372)
Q Consensus       134 ~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  202 (372)
                      .++..++.|+.++      .+..||..+..-... ............+.+  +++.++.|+.+     ..+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKV-PELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeEC-CCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3466667776542      577888877643221 111111112222222  56777777765     347778887765


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEE--EeecCCCCeEE
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSL--RILAHTSDVNT  274 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~  274 (372)
                      ...........          .+|     +++ .-+++.++.|+.+      ..+..||..+++-..  .+...... .+
T Consensus       370 W~~~~~lp~~r----------~~~-----~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~  432 (534)
T PHA03098        370 WREEPPLIFPR----------YNP-----CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC  432 (534)
T ss_pred             eeeCCCcCcCC----------ccc-----eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce
Confidence            43322211110          011     111 1246666776632      358899988764321  11111111 12


Q ss_pred             EEEeCCCCCEEEEEeCC--------CeEEEEeccc
Q 017421          275 VCFGDESGHLIYSGSDD--------NLCKVNSVLL  301 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~d--------g~i~vwd~~~  301 (372)
                      ++.  .++.+++.|+.+        ..+.+||..+
T Consensus       433 ~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        433 AIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             EEE--ECCEEEEECCccCCCCCcccceEEEecCCC
Confidence            333  356677777643        2378888763

>PHA02713 hypothetical protein; Provisional

Probab=95.27  E-value=0.32  Score=47.25  Aligned_cols=145  Identities=15%  Similarity=0.082  Sum_probs=75.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC------------------
Q 017421          135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------------------  191 (372)
Q Consensus       135 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------  191 (372)
                      +|+..+.|+.++     .+..||..++.-... ............+.+  +++..+.|+.++                  
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence            577777887654     478899887632211 111111111222222  577777777542                  


Q ss_pred             -----eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------CeEEEEECCC-C
Q 017421          192 -----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEA-N  259 (372)
Q Consensus       192 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------g~i~iwd~~~-~  259 (372)
                           .+..||..+.+-..........              .....+.  -+++..+.|+.+      ..+..||..+ .
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r--------------~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~  491 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGT--------------IRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYN  491 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCccc--------------ccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCC
Confidence                 4667777776543332221110              0111122  246666777643      2467899886 3


Q ss_pred             --eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC--eEEEEeccc
Q 017421          260 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVNSVLL  301 (372)
Q Consensus       260 --~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~vwd~~~  301 (372)
                        ..+..+...... ..++.  -++++.++|+.++  .+..||+.+
T Consensus       492 ~W~~~~~m~~~r~~-~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        492 GWELITTTESRLSA-LHTIL--HDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CeeEccccCccccc-ceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence              333344332222 23333  3688999999888  566666653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.14  E-value=1.6  Score=42.92  Aligned_cols=164  Identities=12%  Similarity=0.108  Sum_probs=90.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEE------eee-------------cccCCcceEEEEECC--CCCEEEEEeCCCeEE
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQK------DIL-------------AKSLRWTVTDTSLSP--DQRHLVYASMSPIVH  194 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~-------------~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  194 (372)
                      +++++++. .+.|.||++..-.....      ...             .......|..+....  ....|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 57899999865322110      000             000112344554443  456788899999999


Q ss_pred             EEECCCCcee--ee-cceeecccccceeccCCCCccccEEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eE-EEEee
Q 017421          195 IVDVGSGTME--SL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN--KL-SLRIL  266 (372)
Q Consensus       195 vwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--p~~~~l~s~s~dg~i~iwd~~~~--~~-~~~~~  266 (372)
                      +|.+++--..  .. .............|.-.-.-...++.++++  ...++||+++....|.||-....  +. ...-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            9976321000  00 000000000000010000122478899998  77889999988888888765432  11 11111


Q ss_pred             cCCCCeEEEEEeCCC----CC-EEEEEeCCCeEEEEecc
Q 017421          267 AHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~----~~-~l~s~~~dg~i~vwd~~  300 (372)
                      .+...|.+|+|-+.+    |. .+++++-.|.+-+|++.
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            255678899997332    32 77788899999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.03  E-value=1.7  Score=35.95  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---C---eEEEE-
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY-  254 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g---~i~iw-  254 (372)
                      ..|+.+...+.|.+|++.+..+.....+...               +.|..+.++..|++|+|--.+   .   .+++| 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~   93 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF   93 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence            4555556678899999985555444433322               379999999999999986433   2   45654 


Q ss_pred             --ECC--CCeEEE-EeecC---------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          255 --DLE--ANKLSL-RILAH---------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       255 --d~~--~~~~~~-~~~~~---------------------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                        ...  ..+++. .+.+|                     ..++.+++-.|-.|++++.+  ++++.+|.+.
T Consensus        94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~  163 (215)
T PF14761_consen   94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK  163 (215)
T ss_pred             EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence              222  111111 12221                     34667888887788877644  6788888876

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.01  E-value=3  Score=38.72  Aligned_cols=150  Identities=11%  Similarity=0.090  Sum_probs=78.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcee----
Q 017421          135 DGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTME----  204 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~----  204 (372)
                      +...|++|+..|.++||+..... .............+|..+..-+     +...||+ -.-..+.||.+......    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            34689999999999999986543 1112223334455787776643     2234444 45677888887321110    


Q ss_pred             --eecceeecccccceeccCCCCccccEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          205 --SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       205 --~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp----~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                        ........|.           -......++.-|    . ..+|.+-+.||.+.+|+-+.-.....+.. ---...+.|
T Consensus       115 ~~~~L~~~yeh~-----------l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y  182 (418)
T PF14727_consen  115 NQYQLELIYEHS-----------LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCY  182 (418)
T ss_pred             cEEEEEEEEEEe-----------cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEE
Confidence              0001111100           011233333322    2 35777889999999998775443333332 112223455


Q ss_pred             eCCCCCEEEEEeCCCeEEEEe
Q 017421          278 GDESGHLIYSGSDDNLCKVNS  298 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd  298 (372)
                      . +.-..|++++.+..|.-|.
T Consensus       183 ~-~~tDsfvt~sss~~l~~Yk  202 (418)
T PF14727_consen  183 C-PRTDSFVTASSSWTLECYK  202 (418)
T ss_pred             e-ecCCEEEEecCceeEEEec
Confidence            5 4445555555554554444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.97  E-value=1.7  Score=43.38  Aligned_cols=84  Identities=20%  Similarity=0.329  Sum_probs=53.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEC-CC-C--------ceeeecceeecccccceeccCCCCccccEEEEEEcCC-
Q 017421          170 WTVTDTSLSPDQRHLVYASMSPIVHIVDV-GS-G--------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-  238 (372)
Q Consensus       170 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-  238 (372)
                      -.|..+.++|+|++++..+..|.+ |..+ +. |        +.....+...... ..|.    ..+...|..+.|+|. 
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-~~~~----~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDE-RFFT----SNSSLEIKQVRWHPWS  158 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEech-hhcc----CCCCceEEEEEEcCCC
Confidence            468999999999999998886644 4333 21 1        1100000000000 0011    123458999999996 


Q ss_pred             --CCEEEEEeCCCeEEEEECCCC
Q 017421          239 --GRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       239 --~~~l~s~s~dg~i~iwd~~~~  259 (372)
                        +..|++-+.|+++++||+...
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecCCC
Confidence              478888899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.95  E-value=3  Score=38.44  Aligned_cols=182  Identities=10%  Similarity=0.040  Sum_probs=85.7

Q ss_pred             EEEECCCCCEEEEE--eCC----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-------------
Q 017421          129 VSQFSADGSLFVAG--FQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------  189 (372)
Q Consensus       129 ~~~~s~~~~~l~~~--~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------  189 (372)
                      .+-.-|+|+.++++  ..+    |-+.++|-++.+....-....+....-..+-|.|..+.++++..             
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence            34455788888774  222    45777777765443332222222333467778888888887653             


Q ss_pred             -------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEc--CCCCEEEEE-eCCCeEEEEEC-CC
Q 017421          190 -------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAG-SSDDCIYVYDL-EA  258 (372)
Q Consensus       190 -------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--p~~~~l~s~-s~dg~i~iwd~-~~  258 (372)
                             ...+.+||+.+.+.++...+....              .....+.|.  |+..+=+++ ....+|..|-- ..
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~  279 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD  279 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTE--------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCC--------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence                   257999999999887666543211              134456664  444443333 33455555543 33


Q ss_pred             Ce----EEEEeec----------C-------CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc-------------
Q 017421          259 NK----LSLRILA----------H-------TSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT-------------  303 (372)
Q Consensus       259 ~~----~~~~~~~----------~-------~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~-------------  303 (372)
                      ++    .+..+..          .       ..-|+.+..| .|.++|...+ .+|.|+.||+.-..             
T Consensus       280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~  358 (461)
T PF05694_consen  280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGS  358 (461)
T ss_dssp             TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTT
T ss_pred             CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcE
Confidence            32    2222221          0       2457899999 8888888776 68999999986100             


Q ss_pred             ------------CCCCCeeEEEeccCCCeEEEEe
Q 017421          304 ------------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       304 ------------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                                  .......-+..|.||+.|...+
T Consensus       359 ~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  359 IRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             TT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             eccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence                        1122346788999999998763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=1.8  Score=39.79  Aligned_cols=95  Identities=19%  Similarity=0.256  Sum_probs=66.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc---
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL---  300 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~---  300 (372)
                      ++|.++.|++|.+.||+--.+.+|.+++....+...    +.+.....|....|+ .+ .-+|.....| +-+|-..   
T Consensus        67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEchhh
Confidence            489999999999999999999999999985443222    222334468889998 44 5555554444 5555542   


Q ss_pred             ----cccCCCCCeeEEEeccCCCeEEEEe
Q 017421          301 ----LLTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       301 ----~~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                          ..+.+...|.-..|.|+.+.+..++
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeec
Confidence                3457788888899999887665553

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.80  E-value=4.9  Score=40.20  Aligned_cols=78  Identities=13%  Similarity=0.185  Sum_probs=53.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCC----------Ce-E-EEEe------eecccCCcceEEEEECCC---CC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GW-K-IQKD------ILAKSLRWTVTDTSLSPD---QR  182 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~-~-~~~~------~~~~~~~~~v~~~~~~~~---~~  182 (372)
                      .-.|..+.++|+|++|+..+..| |.|-.+..          +. . ....      .........|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            34788999999999998888755 44444421          11 1 1111      112234457899999995   58


Q ss_pred             EEEEEeCCCeEEEEECCCCc
Q 017421          183 HLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       183 ~l~~~~~dg~i~vwd~~~~~  202 (372)
                      +|++-+.|+.+++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            89999999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.38  E-value=3.7  Score=36.94  Aligned_cols=159  Identities=16%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCc------EEEEeCCCC----e--EEEEeeecccCCc--------ceEEEEECCCCCE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVERG----W--KIQKDILAKSLRW--------TVTDTSLSPDQRH  183 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~------i~vwd~~~~----~--~~~~~~~~~~~~~--------~v~~~~~~~~~~~  183 (372)
                      -+.+.++.+.+++..+++.+.+|.      +..+++...    .  .......+....+        ..-++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            466788999876656666666676      555555431    0  1111111111111        3447888778888


Q ss_pred             EEEEeCC------CeEEEEECCCCceeeecceeecccccceecc--CCCCccccEEEEEEcCCCCEEEEEeC-----CC-
Q 017421          184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS-----DD-  249 (372)
Q Consensus       184 l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~sp~~~~l~s~s~-----dg-  249 (372)
                      +++.=.+      ..|..++.. |.......++...   .....  .........-.|+++|+|+.|+++.+     |+ 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~---~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAF---LPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEcccccc---ccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            7776666      788888876 5543333222111   00000  11123457889999999996655432     22 


Q ss_pred             ----------eEEEEECCC-CeEE----EEeec-----CCCCeEEEEEeCCCCCEEEE
Q 017421          250 ----------CIYVYDLEA-NKLS----LRILA-----HTSDVNTVCFGDESGHLIYS  287 (372)
Q Consensus       250 ----------~i~iwd~~~-~~~~----~~~~~-----~~~~v~~~~~sp~~~~~l~s  287 (372)
                                .|..||..+ ++..    ..+..     ....|..+.+- +++++|+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvL  231 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVL  231 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEE
Confidence                      244455554 3222    22222     34678888888 88887764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.33  E-value=2  Score=39.43  Aligned_cols=136  Identities=12%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             ceEEEEECCCCCEEEEEe-----------CCC-eEEEEECCCC--ceeeecceeecccccceeccCCCCccccEEEEEEc
Q 017421          171 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS  236 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  236 (372)
                      ....++|.++|+++++-.           ..+ .|.+++-..+  +......+...              ....+.+++.
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--------------l~~p~Gi~~~   80 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--------------LSMVTGLAVA   80 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--------------CCCccceeEe
Confidence            467899999999877653           223 6766664322  22111111110              1245778998


Q ss_pred             CCCCEEEEEeCCCeEEEE-ECCCC-----e--EEE-Eeec----CCCCeEEEEEeCCCCCEEEEEeCC------------
Q 017421          237 TDGRELVAGSSDDCIYVY-DLEAN-----K--LSL-RILA----HTSDVNTVCFGDESGHLIYSGSDD------------  291 (372)
Q Consensus       237 p~~~~l~s~s~dg~i~iw-d~~~~-----~--~~~-~~~~----~~~~v~~~~~sp~~~~~l~s~~~d------------  291 (372)
                      ++| +++ ++.. .|..| |....     +  .+. .+..    +......++|. |+|.+.++-+..            
T Consensus        81 ~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~  156 (367)
T TIGR02604        81 VGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSD  156 (367)
T ss_pred             cCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCcc
Confidence            988 444 3433 34434 54321     2  111 1222    12346789999 899877655421            


Q ss_pred             -------CeEEEEecccc-----cCCCCCeeEEEeccCCCeEEEE
Q 017421          292 -------NLCKVNSVLLL-----TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       292 -------g~i~vwd~~~~-----~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                             |.|.-++....     ...-.....++|+|+|+++++-
T Consensus       157 ~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       157 ESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             CcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence                   33444444321     1122335788999998887653

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.32  E-value=5.4  Score=38.56  Aligned_cols=111  Identities=16%  Similarity=0.253  Sum_probs=65.7

Q ss_pred             CCcEEEEeCCCCeEEEEeeecccC----------------------------Ccce-EEEEECCCCCEEEEEeCC-----
Q 017421          145 ASQIRIYDVERGWKIQKDILAKSL----------------------------RWTV-TDTSLSPDQRHLVYASMS-----  190 (372)
Q Consensus       145 dg~i~vwd~~~~~~~~~~~~~~~~----------------------------~~~v-~~~~~~~~~~~l~~~~~d-----  190 (372)
                      +|.|.-+|.++++.+-+.......                            ...+ ..+++.|...+++.+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            678999999998776554332211                            0112 234677766677666522     


Q ss_pred             C-----------eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC---EEEEEeCCCeEEEEEC
Q 017421          191 P-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVYDL  256 (372)
Q Consensus       191 g-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~---~l~s~s~dg~i~iwd~  256 (372)
                      +           .|.-.|+++|+.+-.++. ..|....+...      ....-+....+|+   .++.+..+|.+.+.|-
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~------~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr  332 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TPHDEWDYDGV------NEMILFDLKKDGKPRKLLAHADRNGFFYVLDR  332 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeC-CCCCCccccCC------CCcEEEEeccCCcEEEEEEEeCCCceEEEEEC
Confidence            1           567778888887544432 11222222111      1222233335665   7778999999999999


Q ss_pred             CCCeEE
Q 017421          257 EANKLS  262 (372)
Q Consensus       257 ~~~~~~  262 (372)
                      ++++.+
T Consensus       333 ~tG~~i  338 (527)
T TIGR03075       333 TNGKLL  338 (527)
T ss_pred             CCCcee
Confidence            999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.30  E-value=6.8  Score=39.68  Aligned_cols=182  Identities=10%  Similarity=0.032  Sum_probs=110.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEeeec-ccCCcceEEEEECCC-CCEEEEE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQA--------------SQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPD-QRHLVYA  187 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~d--------------g~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~  187 (372)
                      ......+++.+....+++.+.-              ..++++|-++-+.+...... ...-..+.++.|..| +.++++|
T Consensus       714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG  793 (1096)
T KOG1897|consen  714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG  793 (1096)
T ss_pred             CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE
Confidence            4455667777755444443321              13566666655333221111 111224666778887 6777777


Q ss_pred             eC----------CCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 017421          188 SM----------SPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL  256 (372)
Q Consensus       188 ~~----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~  256 (372)
                      +.          .|.|.++.+.. ++........               -.+.+.++.- -+|+++|.  -+..|++|++
T Consensus       794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~---------------v~Gav~aL~~-fngkllA~--In~~vrLye~  855 (1096)
T KOG1897|consen  794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAETV---------------VKGAVYALVE-FNGKLLAG--INQSVRLYEW  855 (1096)
T ss_pred             EEeeccCCCCcccceEEEEEEecCCceeeeeeee---------------eccceeehhh-hCCeEEEe--cCcEEEEEEc
Confidence            53          47788887776 2222111110               1124444432 24665543  3578999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc---------CCCCCeeEEEeccCCCeEEEE
Q 017421          257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .+.+.++.-..+..++..+... ..|..+++|.--+++.+-..+..+         -+..+++++.+-.+..++.+-
T Consensus       856 t~~~eLr~e~~~~~~~~aL~l~-v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae  931 (1096)
T KOG1897|consen  856 TTERELRIECNISNPIIALDLQ-VKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAE  931 (1096)
T ss_pred             cccceehhhhcccCCeEEEEEE-ecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeec
Confidence            9987777777788899999998 899999999988888876655322         355677777776665555443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.23  E-value=0.41  Score=48.59  Aligned_cols=145  Identities=9%  Similarity=0.012  Sum_probs=87.1

Q ss_pred             CceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEE--------EeeecccCCcceEEEEECCCC-CEEEEEeCCCeE
Q 017421          125 SRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQ--------KDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIV  193 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i  193 (372)
                      -++..+...+|+...++.  +.+-.|.+||+++-....        ..........-..++.|+|.- ...+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345556667777665543  334478899987531111        000111112235678888843 234556678888


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec----CC
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----HT  269 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~  269 (372)
                      ++..+......... .               ......++++|+|.|+.++.|...|++.-|-.. .+....+..    ..
T Consensus       181 ~V~~~~~~~~~v~s-~---------------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~  243 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTS-F---------------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEEN  243 (1405)
T ss_pred             hhhhhhhhhhhhcc-c---------------CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCC
Confidence            88776543321111 0               123478999999999999999999999888654 333333321    23


Q ss_pred             CCeEEEEEeCCCCCEEEE
Q 017421          270 SDVNTVCFGDESGHLIYS  287 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s  287 (372)
                      ..|.+|+|- ....++++
T Consensus       244 yrvl~v~Wl-~t~eflvv  260 (1405)
T KOG3630|consen  244 YRVLSVTWL-STQEFLVV  260 (1405)
T ss_pred             cceeEEEEe-cceeEEEE
Confidence            678999998 66666554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.21  E-value=0.28  Score=28.96  Aligned_cols=31  Identities=19%  Similarity=0.226  Sum_probs=25.6

Q ss_pred             cEEEEEEcCCC---CEEEEEeCCCeEEEEECCCC
Q 017421          229 GIFSLKFSTDG---RELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       229 ~i~~~~~sp~~---~~l~s~s~dg~i~iwd~~~~  259 (372)
                      .+.++.|+|+.   .+|+.+-.-|.|.|+|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            68999999854   47887777899999999953

It contains a characteristic DLL sequence motif.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.21  E-value=4.6  Score=37.35  Aligned_cols=98  Identities=9%  Similarity=-0.054  Sum_probs=60.7

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----EEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      ..+..+.|.+++..++++ .+|.+. +....++     .......  ....++++.|. +++..+++| ..|.+....-.
T Consensus       281 ~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~-~d~~~~a~G-~~G~v~~s~D~  356 (398)
T PLN00033        281 RRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYR-SKKEAWAAG-GSGILLRSTDG  356 (398)
T ss_pred             cceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEc-CCCcEEEEE-CCCcEEEeCCC
Confidence            368899999999877766 456543 3444443     1222221  12358889997 777666555 67766654321


Q ss_pred             --c------ccCCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421          301 --L------LTRSINPCNKYLFNPCNKYLIIYLILVI  329 (372)
Q Consensus       301 --~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~  329 (372)
                        +      ........+.+.|.++++..+++..+.+
T Consensus       357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i  393 (398)
T PLN00033        357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL  393 (398)
T ss_pred             CcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence              1      1223456889999998888888854444

>PHA02790 Kelch-like protein; Provisional

Probab=94.04  E-value=4.2  Score=38.80  Aligned_cols=141  Identities=8%  Similarity=-0.009  Sum_probs=68.4

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC--CeEEEEECCCCceeeec
Q 017421          135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESLA  207 (372)
Q Consensus       135 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~  207 (372)
                      ++..+++|+.++     .+..||..++.-.... ...........+.  -++...+.|+.+  ..+..||..+++.....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455667777543     4677888776322211 1111111122222  366777777753  35777887665433222


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEE--eecCCCCeEEEEEeCCCC
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~  282 (372)
                      ......              .....+.  -+|+..+.|+.++   .+..||.++++-...  +...... .+++.  -++
T Consensus       348 ~l~~~r--------------~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~--~~~  408 (480)
T PHA02790        348 SLLKPR--------------CNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV--FGR  408 (480)
T ss_pred             CCCCCC--------------cccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE--ECC
Confidence            221110              0111222  3567777777543   477888876643221  1111111 12222  356


Q ss_pred             CEEEEEeCCCeEEEEecc
Q 017421          283 HLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~  300 (372)
                      ++.+.|+   .+.+||.+
T Consensus       409 ~IYv~GG---~~e~ydp~  423 (480)
T PHA02790        409 RLFLVGR---NAEFYCES  423 (480)
T ss_pred             EEEEECC---ceEEecCC
Confidence            6666663   46778876

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=1.6  Score=40.89  Aligned_cols=88  Identities=18%  Similarity=0.229  Sum_probs=53.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEC---------CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC--
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDV---------GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--  239 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--  239 (372)
                      .|..+..++.|..++.++.+|.+.++=.         +.|+.....+....... .|...    ..-.+..++|+|+.  
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss----~~ltl~Qa~WHP~S~~  179 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS----TSLTLKQAAWHPSSIL  179 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC----CceeeeeccccCCccC
Confidence            5778888999999999999997655431         22322111111111000 01110    11256778999975  


Q ss_pred             -CEEEEEeCCCeEEEEECCCCeEEE
Q 017421          240 -RELVAGSSDDCIYVYDLEANKLSL  263 (372)
Q Consensus       240 -~~l~s~s~dg~i~iwd~~~~~~~~  263 (372)
                       ..|..-+.|..|++||+.....+.
T Consensus       180 D~hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  180 DPHLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             CceEEEEecCcEEEEEecCCcchhh
Confidence             577777889999999998766543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.88  E-value=0.44  Score=40.05  Aligned_cols=62  Identities=11%  Similarity=-0.064  Sum_probs=50.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeccccc--------------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLLLT--------------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~~~--------------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                      .++++|++.+.+|.+++||+.+.+                    .....|..+.++.+|.-+++-+.+....|+..+..|
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W   99 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCW   99 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccccee
Confidence            568889999999999999997322                    244678889999999988888877888899998888


Q ss_pred             ec
Q 017421          340 NY  341 (372)
Q Consensus       340 ~~  341 (372)
                      -.
T Consensus       100 ~~  101 (219)
T PF07569_consen  100 IR  101 (219)
T ss_pred             EE
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.77  E-value=1.4  Score=39.79  Aligned_cols=53  Identities=21%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE---EEEe-eecccCCcceEEEEECCC
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---IQKD-ILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~-~~~~~~~~~v~~~~~~~~  180 (372)
                      ..+.|+|.|||++|++ ...|.|++++ ..+..   +... ............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            4678999999987665 5689999999 44433   1111 111223346889999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.63  E-value=6.1  Score=36.80  Aligned_cols=200  Identities=13%  Similarity=0.024  Sum_probs=99.9

Q ss_pred             EEEECCCCCEEEEEeCCC-----------cEEEEeCCCCeEEEEeeecccCCcc-eEEEEECCCCCEEEEEeC---C-Ce
Q 017421          129 VSQFSADGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASM---S-PI  192 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~---d-g~  192 (372)
                      .+.|.++++.|+....+.           .|+.|.+.+.......+........ ...+..++|+++++....   + ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            389999988877664333           3778887765332122222222222 568889999999876433   2 45


Q ss_pred             EEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeE---EEE
Q 017421          193 VHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKL---SLR  264 (372)
Q Consensus       193 i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~---~~~  264 (372)
                      +.+.++..+.  ......+....             .+....+... .+.+++....   .+.|...++.....   ...
T Consensus       254 v~~~d~~~~~~~~~~~~~l~~~~-------------~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~  319 (414)
T PF02897_consen  254 VYLLDLDDGGSPDAKPKLLSPRE-------------DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV  319 (414)
T ss_dssp             EEEEECCCTTTSS-SEEEEEESS-------------SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE
T ss_pred             EEEEeccccCCCcCCcEEEeCCC-------------CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeE
Confidence            7888887651  00111111100             0122233333 3444443322   35677788876652   234


Q ss_pred             eecCCCC--eEEEEEeCCCCCEEEEEeCCC--eEEEEecc-ccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          265 ILAHTSD--VNTVCFGDESGHLIYSGSDDN--LCKVNSVL-LLT------RSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       265 ~~~~~~~--v~~~~~sp~~~~~l~s~~~dg--~i~vwd~~-~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      +..+...  +..+...  .+.+++....++  .|+++++. ...      ...+.|..+...+++..+.....+.+  -.
T Consensus       320 l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~--~P  395 (414)
T PF02897_consen  320 LIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFT--TP  395 (414)
T ss_dssp             EE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETT--EE
T ss_pred             EcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCC--CC
Confidence            5556554  4444443  344455555554  47888887 321      22334566666666665554421111  23


Q ss_pred             ceEEEeecccceE
Q 017421          334 PNILLDNYFLLRT  346 (372)
Q Consensus       334 ~~i~lw~~~~~~~  346 (372)
                      +++..+|+.+++.
T Consensus       396 ~~~y~~d~~t~~~  408 (414)
T PF02897_consen  396 PTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEEETTTTCE
T ss_pred             CEEEEEECCCCCE
Confidence            6777778877764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK10115 protease 2; Provisional

Probab=93.59  E-value=4.3  Score=40.65  Aligned_cols=112  Identities=10%  Similarity=0.032  Sum_probs=67.3

Q ss_pred             cceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          170 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       170 ~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      ..+..+.|+||+++|+.+...     -.|++.|+.++.......     .           .  .-..++|.+|++.|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-----~-----------~--~~~~~~w~~D~~~~~y  188 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-----D-----------N--VEPSFVWANDSWTFYY  188 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-----c-----------C--cceEEEEeeCCCEEEE
Confidence            357788999999998876442     358888998775311110     0           0  1145899999987765


Q ss_pred             EeCC------CeEEEEECCCC--eEEEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEec
Q 017421          245 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSV  299 (372)
Q Consensus       245 ~s~d------g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~  299 (372)
                      ...+      ..|+.+++.++  +....+........-..+.+.++++++..+.   ++.+.+++.
T Consensus       189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            5432      36888899887  3333333323333323344257777665443   356788774

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.56  E-value=4.4  Score=34.87  Aligned_cols=198  Identities=12%  Similarity=0.051  Sum_probs=115.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ......++-+|||..-.++...+.|-=.|..+++....   ..+.......+...||+...++-+.. .|.-.|-++...
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev  136 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV  136 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence            34566788899998888888888888888888855443   22334457788899999877765443 455566655554


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCeEEEEEeCCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESG  282 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~  282 (372)
                      ..... ...+            -........|.+.|++-+++.. |.-=-.|-.++ .+..+.. .....+.|+.. |+|
T Consensus       137 t~f~l-p~~~------------a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~at-pdG  200 (353)
T COG4257         137 TRFPL-PLEH------------ADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICAT-PDG  200 (353)
T ss_pred             EEeec-cccc------------CCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEEC-CCC
Confidence            32221 1111            1235777889999998888763 21111111111 2222221 23355778888 899


Q ss_pred             CEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEE-EeeeeEEEeeceEEEeec
Q 017421          283 HLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLII-YLILVISIYSPNILLDNY  341 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~-~~~~~~~~~d~~i~lw~~  341 (372)
                      ..-++.-.++.|-..|.....        ........+--+|.|+.-++ .....+..||.....|+-
T Consensus       201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e  268 (353)
T COG4257         201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE  268 (353)
T ss_pred             cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence            888877677777776754221        11122233344555554333 234455556777776753

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.45  E-value=4.6  Score=34.76  Aligned_cols=155  Identities=8%  Similarity=-0.068  Sum_probs=90.4

Q ss_pred             CcceEEEEECCCCCEEEEEeCCC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      ..-...+.|..++.++-+.+.-|  .|+.+|+.+++......+....               ---.++... ++.....=
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~---------------FgEGit~~~-d~l~qLTW  107 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY---------------FGEGITILG-DKLYQLTW  107 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------EEEEEEET-TEEEEEES
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc---------------cceeEEEEC-CEEEEEEe
Confidence            34466788877888888887766  6999999999876554433221               112233332 23333444


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CC---CCCeeEEEec
Q 017421          247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RS---INPCNKYLFN  315 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~---~~~v~~~~~s  315 (372)
                      .++...+||..+.+.+.++.- .+.=..++.   +++.|+.......|+++|..++.        ..   -..++.+-|-
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i  183 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI  183 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred             cCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence            578999999999998888763 344566663   56667777677889999987543        11   1234455554


Q ss_pred             cCCCeEEEEeeeeEEEe-eceEEEeecccceEEEEEe
Q 017421          316 PCNKYLIIYLILVISIY-SPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~~~~  351 (372)
                       +|...|-.       | ...|..-|..+|+.+..+.
T Consensus       184 -~G~IyANV-------W~td~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  184 -NGKIYANV-------WQTDRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             -TTEEEEEE-------TTSSEEEEEETTT-BEEEEEE
T ss_pred             -cCEEEEEe-------CCCCeEEEEeCCCCeEEEEEE
Confidence             44433322       3 3556666777777765543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.37  E-value=1.3  Score=41.07  Aligned_cols=83  Identities=16%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE--ECCC---------------
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS--LSPD---------------  180 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~---------------  180 (372)
                      ..+......+.+++.+|++++.|+...-|.|.++|+..+..++.   .++.+..-...-  ..+.               
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm---WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~  377 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM---WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR  377 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh---hccCccceEEEEEeecccccccccccccCCCCc
Confidence            34556677799999999999988888889999999998744432   333322110000  0000               


Q ss_pred             -CC-EEEEEeCCCeEEEEECCCCce
Q 017421          181 -QR-HLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       181 -~~-~l~~~~~dg~i~vwd~~~~~~  203 (372)
                       .. +++.+-..|.|.||.++.|..
T Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  378 FALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             ceEEEEEEeccCCeEEEEecCCCCE
Confidence             11 234456689999999998864

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.26  E-value=6.9  Score=36.24  Aligned_cols=154  Identities=14%  Similarity=0.113  Sum_probs=82.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      ....+..++++.+++++.....++-||-... .... . .......++++.|.+++..++++ ..|.+. +....+....
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~-~-~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~  314 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQP-H-NRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE  314 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEE-e-cCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence            3455667888887777765332333443211 0011 1 12223468999999998877765 556653 4444443211


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe---ecCCCCeEEEEEeCCCC
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESG  282 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~  282 (372)
                      ...+....         ...-...+..+.|.+++..+++| ..|.+... ...++.-...   ..-....+.+.|. +++
T Consensus       315 ~~~f~~~~---------~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~-~~~  382 (398)
T PLN00033        315 DFDFEEAD---------IKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFF-DDK  382 (398)
T ss_pred             ccceeecc---------cCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEc-CCC
Confidence            00111000         00011258889999888766665 46766554 3334321121   2234578899997 666


Q ss_pred             CEEEEEeCCCeEEEE
Q 017421          283 HLIYSGSDDNLCKVN  297 (372)
Q Consensus       283 ~~l~s~~~dg~i~vw  297 (372)
                      +.+++| .+|.|.-|
T Consensus       383 ~g~~~G-~~G~il~~  396 (398)
T PLN00033        383 KGFVLG-NDGVLLRY  396 (398)
T ss_pred             ceEEEe-CCcEEEEe
Confidence            666655 67876554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.16  E-value=0.9  Score=38.20  Aligned_cols=64  Identities=20%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------e-------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRI-------L-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       235 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +..+++++++.+.+|.+++||+.+++.+..-       .       .....|..+.++ .+|.-+++-+ +|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt-~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT-SNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc-CCCCEEEEEe-CCCEEEeccc
Confidence            4456889999999999999999998754332       1       244678888898 8888877765 5778888865

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.00  E-value=1.1  Score=41.44  Aligned_cols=89  Identities=11%  Similarity=-0.001  Sum_probs=58.1

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE-EEEeCCCC---------------C--EEEEEe
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG---------------H--LIYSGS  289 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp~~~---------------~--~l~s~~  289 (372)
                      -.+.+++.+|++++.++...-|.|.++|+.++..++.+++..+.=.. +.......               .  +++.+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            35778999999998888877799999999999888888765442111 11110111               1  233455


Q ss_pred             CCCeEEEEecccccCCCCCeeEEEeccCCCe
Q 017421          290 DDNLCKVNSVLLLTRSINPCNKYLFNPCNKY  320 (372)
Q Consensus       290 ~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~  320 (372)
                      .-|.|.||.++..    ..|..+...+++++
T Consensus       388 rRg~lEvW~~~~g----~Rv~a~~v~k~~rL  414 (415)
T PF14655_consen  388 RRGILEVWSMRQG----PRVAAFNVGKGCRL  414 (415)
T ss_pred             cCCeEEEEecCCC----CEEEEEEeCCCcEE
Confidence            7788999988643    45566655555443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.93  E-value=5.8  Score=38.75  Aligned_cols=189  Identities=14%  Similarity=0.053  Sum_probs=100.1

Q ss_pred             CCCCCEEEEEeCCC------cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC------CeEEEEECCC
Q 017421          133 SADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGS  200 (372)
Q Consensus       133 s~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~  200 (372)
                      +..+.++++|+.++      .+..||..++.-.... ... ....-.+++.. ++...++|+.+      ..+..||..+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-PMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-CCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence            44566777777763      6788888877322211 111 11123333433 45778888888      3578888888


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      ++-..........            +  ......  -+|...++|+.||     +|..||..+.+-... ..+.......
T Consensus       359 ~~W~~~a~M~~~R------------~--~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~  421 (571)
T KOG4441|consen  359 NQWTPVAPMNTKR------------S--DFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGH  421 (571)
T ss_pred             CceeccCCccCcc------------c--cceeEE--ECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeee
Confidence            7754333222211            1  111111  2477778888886     488888877653211 1122233333


Q ss_pred             EEeCCCCCEEEEEeCCC------eEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEe------eeeEEEeece
Q 017421          276 CFGDESGHLIYSGSDDN------LCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYL------ILVISIYSPN  335 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg------~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~------~~~~~~~d~~  335 (372)
                      ....-+|.+.++|+.++      ++..||..+..        ..... ..++ .-++...++|+      ..++..||..
T Consensus       422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCC
Confidence            33224788888888654      46677766322        11111 1122 23345545443      2236668887


Q ss_pred             EEEeeccc
Q 017421          336 ILLDNYFL  343 (372)
Q Consensus       336 i~lw~~~~  343 (372)
                      -.-|..-.
T Consensus       500 ~~~W~~v~  507 (571)
T KOG4441|consen  500 TNQWTMVA  507 (571)
T ss_pred             CCceeEcc
Confidence            77787654

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=92.86  E-value=6.5  Score=34.87  Aligned_cols=127  Identities=18%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             eEEEEECCCCCEEEEEe------------------CCCeEEEEECCCCceeeecceeeccccccee----ccC-------
Q 017421          172 VTDTSLSPDQRHLVYAS------------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS----AAD-------  222 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~-------  222 (372)
                      ...+.+.++|..|++..                  .|+.+...|+++++.+.............+.    +..       
T Consensus        59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~  138 (299)
T PF14269_consen   59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS  138 (299)
T ss_pred             ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence            45556666776666221                  2456777788888875554332221111111    000       


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-C----eEEEEEeCCCCCEEEEEeCCCeEEEE
Q 017421          223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-D----VNTVCFGDESGHLIYSGSDDNLCKVN  297 (372)
Q Consensus       223 ~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~----v~~~~~sp~~~~~l~s~~~dg~i~vw  297 (372)
                      ....-.-+++|...++|.+|++.-.-..|.+.|-++++.+..+.+... .    -...+|. .+-+++-.+..++.|.++
T Consensus       139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~Q-Hdar~~~~~~~~~~IslF  217 (299)
T PF14269_consen  139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQ-HDARFLNESNDDGTISLF  217 (299)
T ss_pred             CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeec-cCCEEeccCCCCCEEEEE
Confidence            011223477888888999999998889999999999999888865411 1    1225555 666666666778889999


Q ss_pred             ec
Q 017421          298 SV  299 (372)
Q Consensus       298 d~  299 (372)
                      |-
T Consensus       218 DN  219 (299)
T PF14269_consen  218 DN  219 (299)
T ss_pred             cC
Confidence            86

>PRK10115 protease 2; Provisional

Probab=92.86  E-value=11  Score=37.70  Aligned_cols=72  Identities=13%  Similarity=0.094  Sum_probs=48.3

Q ss_pred             CceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC------CeE
Q 017421          125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV  193 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i  193 (372)
                      -.+..+.|+||+++|+.+..     ...|++.|+.++..+...+  .+.   -..++|.+|++.|+....+      ..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNV---EPSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCc---ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            34667889999999886533     2368899998774332211  111   1458999999877766542      367


Q ss_pred             EEEECCCC
Q 017421          194 HIVDVGSG  201 (372)
Q Consensus       194 ~vwd~~~~  201 (372)
                      +.+++.++
T Consensus       202 ~~h~lgt~  209 (686)
T PRK10115        202 WRHTIGTP  209 (686)
T ss_pred             EEEECCCC
Confidence            77888777

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.77  E-value=0.019  Score=52.51  Aligned_cols=144  Identities=15%  Similarity=0.158  Sum_probs=96.2

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCCce
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~  203 (372)
                      .......|-|++.-++.++.+..+..||-... .....    ..+.....++|..++..++. +-..+.+.+||+.+...
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            33444578887777888888889999996543 22221    22234667888887776554 45578899999987553


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      ..+..-.              .|....  +.|++.+..++.+...|.+.|++..+.+.+...-.|...+++++|. +.+ 
T Consensus       110 qqLE~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-  171 (615)
T KOG2247|consen  110 QQLESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-  171 (615)
T ss_pred             HHHhccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-
Confidence            3222210              122222  7889988889999889999999998776655554588999999998 444 


Q ss_pred             EEEEEeCC
Q 017421          284 LIYSGSDD  291 (372)
Q Consensus       284 ~l~s~~~d  291 (372)
                      +.+.++.|
T Consensus       172 ~vil~dcd  179 (615)
T KOG2247|consen  172 YVILCDCD  179 (615)
T ss_pred             eeeecCcH
Confidence            33444434

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.66  E-value=5.6  Score=37.36  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=37.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----eecccCCcceEEEEECCCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----ILAKSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~  181 (372)
                      -...+.|+|.|||++|++--..|.|++++..++......    ............|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            456788999999987776554699999986554321111    0011124468899999875

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.59  E-value=3.4  Score=38.12  Aligned_cols=144  Identities=11%  Similarity=0.031  Sum_probs=82.7

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      +.+-|....+.|++ ...|.+.=|-+.....-..........++|.++.|++|.+.+++--.+..|.+++..........
T Consensus        26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            33445443343433 33355666665432211111222334458999999999999999999999999998544332221


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEE
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIY  286 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~  286 (372)
                      ...-.            ..+..|....|+.+ .-+|..+..| +.+|.+... +.++..+.|.-.|.=..|. ++.+.+.
T Consensus       105 ~~~ck------------~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~L  169 (657)
T KOG2377|consen  105 TQECK------------TKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVIL  169 (657)
T ss_pred             HHHhc------------cCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceEe
Confidence            11100            11235888889865 5566555434 667765433 2344455677777777787 6655444


Q ss_pred             E
Q 017421          287 S  287 (372)
Q Consensus       287 s  287 (372)
                      .
T Consensus       170 L  170 (657)
T KOG2377|consen  170 L  170 (657)
T ss_pred             e
Confidence            3

>PRK13684 Ycf48-like protein; Provisional

Probab=92.56  E-value=7.7  Score=35.02  Aligned_cols=143  Identities=15%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEE-ECCCCc-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIV-DVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      ...+..+.+.|++.+++++ ..|.+..- +- .++ -.....                +-...++.+.+.|+++.++++.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~----------------~~~~~l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQR----------------NSSRRLQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeC----------------CCcccceeeeEcCCCCEEEEec
Confidence            3468899999988766555 45655432 21 121 111111                1223788999999998777664


Q ss_pred             CCCeEEEEECCCCeEEEEeec----CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc---cc------cCCCCCeeEEE
Q 017421          247 SDDCIYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL---LL------TRSINPCNKYL  313 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~---~~------~~~~~~v~~~~  313 (372)
                       .|.+.+=..+.+..-.....    ....+.++.+. +++..++++ .+|.+.. ...   +.      .......+.+.
T Consensus       234 -~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~-~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~  309 (334)
T PRK13684        234 -GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR-TPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIV  309 (334)
T ss_pred             -CCEEEEccCCCCCccccccCCccccccceeeEEEc-CCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEE
Confidence             57654322333332111111    12357888998 667665554 5675543 221   11      12223577888


Q ss_pred             eccCCCeEEEEeeeeEEEee
Q 017421          314 FNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       314 ~s~~g~~l~~~~~~~~~~~d  333 (372)
                      |..+++.++++..+.|-.++
T Consensus       310 ~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        310 FLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             EeCCCceEEECCCceEEEec
Confidence            88888888888655544444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.07  E-value=0.21  Score=49.31  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=84.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE-----------EECCCCCEEEEEeCCCeEEE
Q 017421          127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT-----------SLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~dg~i~v  195 (372)
                      |..+-|.++.-++..+-.++.|++........  .  ...+|...++.+           ..+|||..++.++.||.++.
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence            33334445667777788888988887765321  1  122344333332           36899999999999999999


Q ss_pred             EECCCCce--eeecceeecccccceeccCCCCccccEEEEEEcCC-------C--CEEEEEeC-CCeEEEEECCCCeEEE
Q 017421          196 VDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-------G--RELVAGSS-DDCIYVYDLEANKLSL  263 (372)
Q Consensus       196 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-------~--~~l~s~s~-dg~i~iwd~~~~~~~~  263 (372)
                      |.+.-...  ......++.|.          +|. .++.+ ++.+       +  .++++++. +..+++|.....+|+ 
T Consensus       262 ~Qiyi~g~~~~rclhewkphd----------~~p-~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl-  328 (1283)
T KOG1916|consen  262 YQIYITGKIVHRCLHEWKPHD----------KHP-RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL-  328 (1283)
T ss_pred             eeeeeeccccHhhhhccCCCC----------CCC-ceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh-
Confidence            98753221  11122222222          111 22222 3221       1  24455554 456999998888876 


Q ss_pred             EeecCCCCeEEEEEeCCCCCE------------EEEEeCCCeEEEEecc
Q 017421          264 RILAHTSDVNTVCFGDESGHL------------IYSGSDDNLCKVNSVL  300 (372)
Q Consensus       264 ~~~~~~~~v~~~~~sp~~~~~------------l~s~~~dg~i~vwd~~  300 (372)
                       +......|..+.  |+++..            ++.-+.++.|.+|.-+
T Consensus       329 -l~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  329 -LDKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             -hhhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence             222223344444  455542            2334567888888644

>PHA03098 kelch-like protein; Provisional

Probab=91.89  E-value=2.5  Score=41.01  Aligned_cols=67  Identities=9%  Similarity=0.059  Sum_probs=35.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC------CeEEEEECCCCce
Q 017421          135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTM  203 (372)
Q Consensus       135 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~  203 (372)
                      +++.++.|+.+     ..+..||..++.-... ............+.  -+++.++.|+.+      ..+..||+.+++.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREE-PPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            57777888765     3577888876532211 11111111111222  256667777632      4578899887654


Q ss_pred             e
Q 017421          204 E  204 (372)
Q Consensus       204 ~  204 (372)
                      .
T Consensus       419 ~  419 (534)
T PHA03098        419 S  419 (534)
T ss_pred             e
Confidence            3

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.17  E-value=11  Score=33.96  Aligned_cols=108  Identities=21%  Similarity=0.340  Sum_probs=56.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCC----CCEEEEE
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAG  245 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~  245 (372)
                      ..++|+|.||++++++ ...|.|++++ ..+.. ..........          .........++++|+    +.+.++.
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~----------~~~~~gllgia~~p~f~~n~~lYv~~   70 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVF----------ADGERGLLGIAFHPDFASNGYLYVYY   70 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTB----------TSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccccccc----------ccccCCcccceeccccCCCCEEEEEE
Confidence            3688999999877664 6699999999 44433 1111111100          023347899999994    3333333


Q ss_pred             eCC--------CeEEEEECCCC-------eEE-EEeec---CCCCeEEEEEeCCCCCEEEEEeCC
Q 017421          246 SSD--------DCIYVYDLEAN-------KLS-LRILA---HTSDVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       246 s~d--------g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~sp~~~~~l~s~~~d  291 (372)
                      +..        ..|.-|....+       +.+ ..+..   ....-..|.|. |+|.+.++.+..
T Consensus        71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG~LYvs~G~~  134 (331)
T PF07995_consen   71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDGKLYVSVGDG  134 (331)
T ss_dssp             EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTSEEEEEEB-T
T ss_pred             EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCCcEEEEeCCC
Confidence            321        23444544433       111 12222   22345679999 899777766543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.85  E-value=5.8  Score=30.15  Aligned_cols=106  Identities=9%  Similarity=0.056  Sum_probs=67.1

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeecCCCCeEEEEEeC---C-CCCEEEEEeCCCeEEEEeccc
Q 017421          234 KFSTDGRELVAGSSDDCIYVYDLEAN--------KLSLRILAHTSDVNTVCFGD---E-SGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       234 ~~sp~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~sp---~-~~~~l~s~~~dg~i~vwd~~~  301 (372)
                      .|.....-|++++..|.|.|++....        ..+..+. -...|++++-.+   . ....|+.| ....|..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence            45555556888888899999987533        2333333 445677776542   2 34466666 466799999873


Q ss_pred             -----ccCCCCCeeEEEecc----CCCeEEEEeeeeEEEee--ceEEEeec
Q 017421          302 -----LTRSINPCNKYLFNP----CNKYLIIYLILVISIYS--PNILLDNY  341 (372)
Q Consensus       302 -----~~~~~~~v~~~~~s~----~g~~l~~~~~~~~~~~d--~~i~lw~~  341 (372)
                           .+.....|.++.+-.    ...+++++....+.-||  +.=.+|.+
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence                 234456677776632    34577777777777766  66677765

>PHA02790 Kelch-like protein; Provisional

Probab=90.47  E-value=10  Score=36.21  Aligned_cols=133  Identities=12%  Similarity=0.044  Sum_probs=63.8

Q ss_pred             CCCCEEEEEeCC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC---eEEEEECCCCceeeecc
Q 017421          134 ADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLAN  208 (372)
Q Consensus       134 ~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~  208 (372)
                      -++...++|+.+  ..+..||..++.-... ............+..  +++..+.|+.++   .+..||.+++.-.....
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~  393 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNM-PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS  393 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEEC-CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence            357777787754  3577888765522211 111111111222222  577777777543   46678887765433222


Q ss_pred             eeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEeecCCCCeEEEEEeCCCCCEEE
Q 017421          209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIY  286 (372)
Q Consensus       209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~l~  286 (372)
                      .....              .....+.  -+++..+.|   |.+.+||.++++-.  ..+...... .+++.  -++++.+
T Consensus       394 m~~~r--------------~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~-~~~~v--~~~~IYv  451 (480)
T PHA02790        394 TYYPH--------------YKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN-PELII--VDNKLLL  451 (480)
T ss_pred             CCCcc--------------ccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc-cEEEE--ECCEEEE
Confidence            11110              0111122  345555665   45778988766432  222111111 23333  3567777


Q ss_pred             EEeCC
Q 017421          287 SGSDD  291 (372)
Q Consensus       287 s~~~d  291 (372)
                      .|+.+
T Consensus       452 iGG~~  456 (480)
T PHA02790        452 IGGFY  456 (480)
T ss_pred             ECCcC
Confidence            77654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.41  E-value=6.2  Score=37.00  Aligned_cols=132  Identities=11%  Similarity=0.067  Sum_probs=76.1

Q ss_pred             CCCCCEEEE-EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC--------CEEEEEeCC
Q 017421          178 SPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--------RELVAGSSD  248 (372)
Q Consensus       178 ~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--------~~l~s~s~d  248 (372)
                      ..|.++|+. |.....++-.|++.|+.+....+..                 .+ -+.|.|+.        +.|+-.+ +
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS-~  536 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLS-D  536 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeec-c
Confidence            335555443 4445668888888888654443221                 23 56666642        3344444 4


Q ss_pred             CeEEEEECCC-CeEEEEeecCCCCeEEEEEeC---CCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCC
Q 017421          249 DCIYVYDLEA-NKLSLRILAHTSDVNTVCFGD---ESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCN  318 (372)
Q Consensus       249 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp---~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g  318 (372)
                      ..|.-.|.+- |..+.... ....++.-.|+.   ....++|.++..|-|++||.-      .+.+....|..+..+.+|
T Consensus       537 ~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~G  615 (776)
T COG5167         537 YSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANG  615 (776)
T ss_pred             cceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCC
Confidence            4444445542 32222211 122222222320   234589999999999999963      345677889999999999


Q ss_pred             CeEEEEeeeeE
Q 017421          319 KYLIIYLILVI  329 (372)
Q Consensus       319 ~~l~~~~~~~~  329 (372)
                      +++++.....+
T Consensus       616 k~ilaTCk~yl  626 (776)
T COG5167         616 KHILATCKNYL  626 (776)
T ss_pred             cEEEEeecceE
Confidence            99887653333

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.16  E-value=3.6  Score=42.88  Aligned_cols=160  Identities=13%  Similarity=0.001  Sum_probs=92.8

Q ss_pred             ccccCCceeEeeeeeCCCCCccccCCCCceEEEEE--------CCCCCEEEEEeCCCcEEEEeCCCCeEEEEe------e
Q 017421           98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF--------SADGSLFVAGFQASQIRIYDVERGWKIQKD------I  163 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~  163 (372)
                      .+...|..+.+|++........+.+....|..+..        .|.=+++++.+.--.|.|+-+.-.......      .
T Consensus        93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence            34777888999999998888889988888888863        333345544444466777765432111111      1


Q ss_pred             ecccCCcceEEEEECCCCCEEEEEeCCCeEEEE--ECCCCceee---ecceeecc-cccc-eeccCCCCccccEEEEEEc
Q 017421          164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV--DVGSGTMES---LANVTEIH-DGLD-FSAADDGGYSFGIFSLKFS  236 (372)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~~h~~~i~~~~~s  236 (372)
                      ...-....|.++....+|+.+++| .||.|+-.  ....+=...   ........ ..+. .-+.-.+++..+|..++..
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            111223468889877788766654 56644322  221111000   00000000 0000 0000002566799999998


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC
Q 017421          237 TDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       237 p~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      ..-..+.+-+..|+|.+||+..
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCceEEEEEccC
Confidence            8888889999999999999976

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.90  E-value=20  Score=34.76  Aligned_cols=115  Identities=15%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cce-------EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTV-------TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v-------~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      +..|++++.++.|.-+|..+++.+.+........ ...       ..+++  .+..++.++.++.+.-.|.++|+..-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4566667777889999999887665533211100 000       01122  2346777888999999999999875444


Q ss_pred             ceeecccccceeccCCCCccccEEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCeEEEEee
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRIL  266 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~  266 (372)
                      .......+            ..+.+ ... -++ .++++.      .+|.|.-+|.++|+.+..+.
T Consensus       147 ~~~~~~~~------------~~~tssP~v-~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       147 KNGDYKAG------------YTITAAPLV-VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccccc------------ccccCCcEE-ECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            32111000            01111 011 134 444443      26889999999998776643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.90  E-value=2.3  Score=41.42  Aligned_cols=87  Identities=22%  Similarity=0.128  Sum_probs=45.9

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCc----eeeecceeec-----ccccceec-cCCCCccccEEEEEEcC----CCCEEEE
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGT----MESLANVTEI-----HDGLDFSA-ADDGGYSFGIFSLKFST----DGRELVA  244 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~-----~~~~~~~~-~~~~~h~~~i~~~~~sp----~~~~l~s  244 (372)
                      ++...++.+..||.+.........    ..........     ..++.... .....-...+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            467788888999988888766411    1111100000     00000000 00111223455666666    6789999


Q ss_pred             EeCCCeEEEEECCCCeEEEEe
Q 017421          245 GSSDDCIYVYDLEANKLSLRI  265 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~  265 (372)
                      .+.|+++++||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.43  E-value=4.3  Score=34.62  Aligned_cols=131  Identities=15%  Similarity=0.084  Sum_probs=70.1

Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C--CeEEEEECCC--CeEE-----E
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEA--NKLS-----L  263 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d--g~i~iwd~~~--~~~~-----~  263 (372)
                      .+||+.+++.........                .....-.+-|||++|++|+. +  ..+++++...  +.+.     .
T Consensus        49 ~~yD~~tn~~rpl~v~td----------------~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~  112 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTD----------------TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN  112 (243)
T ss_pred             EEEecCCCcEEeccCCCC----------------CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc
Confidence            479999887654432111                12223356789999998875 2  3488888654  1110     0


Q ss_pred             EeecCCCCeEEEEEeCCCCCEEEEEeCCC-eEEEEecccccC---------------CCCCeeEEEeccCCCeEEEEeee
Q 017421          264 RILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVNSVLLLTR---------------SINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-~i~vwd~~~~~~---------------~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      .+. ....-.++..- +||+.|+.|+.+. +..+|..+....               ....---+-..|+|+.++.+   
T Consensus       113 ~m~-~~RWYpT~~~L-~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a---  187 (243)
T PF07250_consen  113 DMQ-SGRWYPTATTL-PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA---  187 (243)
T ss_pred             ccc-CCCccccceEC-CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE---
Confidence            111 11222233334 7999999888664 344444321100               00111234556888888777   


Q ss_pred             eEEEeeceEEEeecccceEEEEE
Q 017421          328 VISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                           +..-.|||+.+.+.++.|
T Consensus       188 -----n~~s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  188 -----NRGSIIYDYKTNTVVRTL  205 (243)
T ss_pred             -----cCCcEEEeCCCCeEEeeC
Confidence                 334456677777665554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.31  E-value=14  Score=36.50  Aligned_cols=51  Identities=18%  Similarity=0.316  Sum_probs=34.6

Q ss_pred             CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421          146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  201 (372)
Q Consensus       146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  201 (372)
                      -.|+||+.. |..+......++   ++..+.|+.+.. |++...+|++++|++-..
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~---~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHG---ELIGMGWSDDEE-LICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCC---CeeeecccCCce-EEEEeccceEEEeecchh
Confidence            357888865 444444332222   688999997765 556678999999998644

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.05  E-value=22  Score=34.01  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-------------CCeEEEE
Q 017421          130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV  196 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~vw  196 (372)
                      +...++|.+++...  ..+..+|+.. +.+.......+...-=..+...|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            56778998776555  6788888864 343332222211111245778899999988772             2236667


Q ss_pred             ECCCCceeeecceeecccccce-----------eccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR  264 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~  264 (372)
                      | .+|+................           ........-.-++++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            7 77776555443332211111           0000112224588999999 444555554445888999888888777


Q ss_pred             eecC
Q 017421          265 ILAH  268 (372)
Q Consensus       265 ~~~~  268 (372)
                      +-.+
T Consensus       309 lg~~  312 (477)
T PF05935_consen  309 LGPP  312 (477)
T ss_dssp             ES-S
T ss_pred             eCCC
Confidence            6544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.97  E-value=3.6  Score=33.09  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             cEEEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 017421          229 GIFSLKFSTDG------RELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       229 ~i~~~~~sp~~------~~l~s~s~dg~i~iwd~~~  258 (372)
                      .+..++|||.|      -+|++.+.++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999954      4788899999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.87  E-value=6.3  Score=39.02  Aligned_cols=119  Identities=11%  Similarity=0.061  Sum_probs=74.1

Q ss_pred             CceEEEEECC--CCCEEEEEeCCCcEEEEeCCC-------C----eE-----EEEeeecccCCcceEEEEEC--CCCCEE
Q 017421          125 SRAYVSQFSA--DGSLFVAGFQASQIRIYDVER-------G----WK-----IQKDILAKSLRWTVTDTSLS--PDQRHL  184 (372)
Q Consensus       125 ~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~-------~----~~-----~~~~~~~~~~~~~v~~~~~~--~~~~~l  184 (372)
                      ..|+.|....  +...|+.+..||.|.+|.++.       .    ..     ..+..........+++++++  ...++|
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            3455554433  456788999999999997632       0    00     00011112233468999998  788899


Q ss_pred             EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-----C-EEEEEeCCCeEEEEEC
Q 017421          185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-----R-ELVAGSSDDCIYVYDL  256 (372)
Q Consensus       185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-----~-~l~s~s~dg~i~iwd~  256 (372)
                      |+++....|.||-+.......... . .           ..+...|.+|+|-++.     . .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~-~-s-----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHV-P-S-----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccc-c-c-----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            999888888887765431111110 0 0           0134478889987643     2 6778888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.76  E-value=3.1  Score=23.99  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=27.4

Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       237 p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      |+++.|+++. .+++|.++|..+++.+..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            5677665544 578999999999988877765 233345544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.75  E-value=30  Score=35.31  Aligned_cols=172  Identities=12%  Similarity=0.043  Sum_probs=95.3

Q ss_pred             CCCCceEEEEEC---C----CCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeeecccCCcceEEEEECC
Q 017421          122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYDVERG---------------WKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       122 ~~~~~v~~~~~s---~----~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      ....+|..|+|+   .    ..++|++-. ...+.|+...-.               ..+..+....-...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            457889999998   2    224555544 456777772211               11111111111233678899999


Q ss_pred             -CCCEEEEEeCCCeEEEEECCCCceee--ecceeecccccc-eeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421          180 -DQRHLVYASMSPIVHIVDVGSGTMES--LANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD  255 (372)
Q Consensus       180 -~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd  255 (372)
                       +.+.||+....|...||++.......  .........|-. +.+    .....-..+.|.++.+.|+..+ ...+.++|
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~----~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d  230 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDP----EELSNWKRILWVSDSNRLLVCN-RSKLMLID  230 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCC----cccCcceeeEecCCCCEEEEEc-CCceEEEE
Confidence             66789999999999999993222111  111111111111 111    1123456788988877787776 46789999


Q ss_pred             CCCCeEEE-E-eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          256 LEANKLSL-R-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       256 ~~~~~~~~-~-~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +++..... . .......|..+.-+|.+..+++.-. ...|.+.++.
T Consensus       231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~  276 (765)
T PF10214_consen  231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK  276 (765)
T ss_pred             CCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence            99876532 1 1224457778877733333333322 2445555554

These proteins are found in fungi.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.71  E-value=16  Score=32.12  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=53.5

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------CeEEEEeeec-cc--CCcceEEEEECCCCC---------
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------GWKIQKDILA-KS--LRWTVTDTSLSPDQR---------  182 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~-~~--~~~~v~~~~~~~~~~---------  182 (372)
                      +..-..-+.|+++|.+.+.++....+...+||...      ...+...+.. .+  ....++.+.|+....         
T Consensus        19 Dp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~   98 (336)
T TIGR03118        19 DPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT   98 (336)
T ss_pred             CccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence            33445678999999999888888889999999871      2222221111 11  234578888875433         


Q ss_pred             ---EEEEEeCCCeEEEEECCC
Q 017421          183 ---HLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       183 ---~l~~~~~dg~i~vwd~~~  200 (372)
                         .++.+++||+|.-|....
T Consensus        99 ~~a~Fif~tEdGTisaW~p~v  119 (336)
T TIGR03118        99 GPSRFLFVTEDGTLSGWAPAL  119 (336)
T ss_pred             cceeEEEEeCCceEEeecCcC
Confidence               367788999999998543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.35  E-value=15  Score=34.75  Aligned_cols=73  Identities=11%  Similarity=0.145  Sum_probs=47.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEE---------CCCCeEEEE---e-------ec-CCCCeEEEEEeCCC--CCEEE
Q 017421          229 GIFSLKFSTDGRELVAGSSDDCIYVYD---------LEANKLSLR---I-------LA-HTSDVNTVCFGDES--GHLIY  286 (372)
Q Consensus       229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd---------~~~~~~~~~---~-------~~-~~~~v~~~~~sp~~--~~~l~  286 (372)
                      .|..+..++.|..++-.+.+|.+.++=         ++.|+....   +       .. ..-.+..++|+|..  ...|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            677888899999888888888765543         122322111   1       11 11245568999444  46777


Q ss_pred             EEeCCCeEEEEeccc
Q 017421          287 SGSDDNLCKVNSVLL  301 (372)
Q Consensus       287 s~~~dg~i~vwd~~~  301 (372)
                      .-+.|+.||+||+..
T Consensus       185 iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEecCcEEEEEecCC
Confidence            788999999999863

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.32  E-value=23  Score=33.42  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC------CEEEE
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------RELVA  244 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~------~~l~s  244 (372)
                      ..+.|+|.||+++|++--..|.|++++..++.......+.....    .     ........|+++|+-      .+|..
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~----~-----~ge~GLlglal~PdF~~~~~n~~lYv  101 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN----D-----AQHNGLLGLALHPDFMQEKGNPYVYI  101 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec----c-----CCCCceeeEEECCCccccCCCcEEEE
Confidence            47899999999877765446999999876554322221111100    0     013478899999873      24433


Q ss_pred             Ee----------CCCeEEEEECCCC-------eEEE-Eee---cCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421          245 GS----------SDDCIYVYDLEAN-------KLSL-RIL---AHTSDVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       245 ~s----------~dg~i~iwd~~~~-------~~~~-~~~---~~~~~v~~~~~sp~~~~~l~s~~~d  291 (372)
                      ..          ....|.-|.+...       +.+. .+.   .|.  -..|+|. |||.++++.+..
T Consensus       102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~Fg-PDG~LYVs~GD~  166 (454)
T TIGR03606       102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFG-PDGKIYYTIGEQ  166 (454)
T ss_pred             EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEEC-CCCcEEEEECCC
Confidence            32          1234555554321       1111 111   132  3467898 899877765543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.77  E-value=3.6  Score=40.00  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=44.8

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC----CeEEEEeeecc-------------------cCCcceEEEEECC----CCCEEEE
Q 017421          134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY  186 (372)
Q Consensus       134 ~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~-------------------~~~~~v~~~~~~~----~~~~l~~  186 (372)
                      ++...|+++..||.+.......    +..........                   .....+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4677788888999988887764    21111111000                   0112455666666    7788999


Q ss_pred             EeCCCeEEEEECCCCceeeec
Q 017421          187 ASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       187 ~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      .+.|+.+++||+.++.+....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999985443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.33  E-value=11  Score=28.68  Aligned_cols=117  Identities=15%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEE----EeeecccCCcceEEEE---ECC--CCCEEEEEeCCCeEEEEECCC
Q 017421          130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTS---LSP--DQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      -.|......|++++..|+|.|++........    .....-.....|++++   |.|  +...|+.|+. ..+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            3566667789999999999999876432111    0000111222466664   433  3445666654 5688999987


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSSDDCIYVYDLEANKLSLRI  265 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp----~~~~l~s~s~dg~i~iwd~~~~~~~~~~  265 (372)
                      ..-.......                 ..|+++.+-.    +..++++| .+..|.-||..-.+...+.
T Consensus        83 N~d~Fyke~~-----------------DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   83 NSDLFYKEVP-----------------DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             CchhhhhhCc-----------------cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence            7654333322                 2566666522    23444444 4677888887766655444

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.98  E-value=23  Score=31.90  Aligned_cols=148  Identities=11%  Similarity=0.161  Sum_probs=86.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCe------EEEEECCCC--cee--eecce--eecccccceeccCCCCccccEEEEEEcCC
Q 017421          171 TVTDTSLSPDQRHLVYASMSPI------VHIVDVGSG--TME--SLANV--TEIHDGLDFSAADDGGYSFGIFSLKFSTD  238 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~------i~vwd~~~~--~~~--~~~~~--~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  238 (372)
                      .+..+.+.+++..+++.+.+|.      +..+++...  ...  .....  .....+..+..     .....-+|++.++
T Consensus        21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-----~~~D~Egi~~~~~   95 (326)
T PF13449_consen   21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-----NGLDPEGIAVPPD   95 (326)
T ss_pred             cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-----CCCChhHeEEecC
Confidence            4788999876666776777777      655555431  100  00000  00001111100     1125567888788


Q ss_pred             CCEEEEEeCC------CeEEEEECCCCeEEEEee---------------cCCCCeEEEEEeCCCCCEEEEEeC-----CC
Q 017421          239 GRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----DN  292 (372)
Q Consensus       239 ~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~~l~s~~~-----dg  292 (372)
                      |.++++.-.+      ..|..++.. |+....+.               ..+...-+|+++ ++|+.|+++.+     |+
T Consensus        96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCCC
Confidence            8888877777      788888876 55443331               134467899999 99996665532     22


Q ss_pred             --e-------EEEEecc--c-c----------cC-----CCCCeeEEEeccCCCeEEEEe
Q 017421          293 --L-------CKVNSVL--L-L----------TR-----SINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       293 --~-------i~vwd~~--~-~----------~~-----~~~~v~~~~~s~~g~~l~~~~  325 (372)
                        .       ++++...  + .          ..     ....++.+.+-+++++|+.-.
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence              1       4555443  2 1          01     456788999999999877653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.14  E-value=18  Score=29.93  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             CCCEEEEEeC--CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCceeeecceee
Q 017421          135 DGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTE  211 (372)
Q Consensus       135 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~  211 (372)
                      +|.++.+.+.  ...|++||+.+++.+.......   ..+..--...-+..+ ...-.+|.-..+|.++-++....... 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC---ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-
Confidence            3445555443  3479999999887665433321   011111111112222 22335777888888776654333221 


Q ss_pred             cccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       212 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                                      +.=..++  .|+.-|+.++...++..-|.++.
T Consensus       131 ----------------GeGWgLt--~d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         131 ----------------GEGWGLT--SDDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             ----------------Ccceeee--cCCcceEeeCCceEEEecCHHHh
Confidence                            1223333  34555666665566666665543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.55  E-value=21  Score=33.70  Aligned_cols=147  Identities=15%  Similarity=0.126  Sum_probs=81.5

Q ss_pred             CCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC-------EEEEEeCCCeEEEEECCCCce-e
Q 017421          134 ADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-------HLVYASMSPIVHIVDVGSGTM-E  204 (372)
Q Consensus       134 ~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~-~  204 (372)
                      .+..+|. .|.....++--|++.|+.+..   ..-+. .+ -+.|.|+.+       .-++|-.+..|.-.|.+.... +
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvvee---W~~~d-dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEE---WDLKD-DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeE---eecCC-cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence            3444443 344445666667777755544   22222 23 567777432       123344455565566553321 1


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCE
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL  284 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~  284 (372)
                      .........            ......+..-. ...++|+++..|.|++||--.-.....+++-...|..+..+ .+|.+
T Consensus       552 ~v~esKdY~------------tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt-a~Gk~  617 (776)
T COG5167         552 KVVESKDYK------------TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT-ANGKH  617 (776)
T ss_pred             eeeeehhcc------------ccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEee-cCCcE
Confidence            111111100            00122222222 34589999999999999965444444566677889999999 89988


Q ss_pred             EEEEeCCCeEEEEecc
Q 017421          285 IYSGSDDNLCKVNSVL  300 (372)
Q Consensus       285 l~s~~~dg~i~vwd~~  300 (372)
                      +++.+ ...|.+-|++
T Consensus       618 ilaTC-k~yllL~d~~  632 (776)
T COG5167         618 ILATC-KNYLLLTDVP  632 (776)
T ss_pred             EEEee-cceEEEEecc
Confidence            77665 4567777875

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.54  E-value=46  Score=34.04  Aligned_cols=118  Identities=13%  Similarity=0.061  Sum_probs=72.6

Q ss_pred             CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-----EEEEeeeccc-------CCcceEEEEECCCCCEEEEEeCC
Q 017421          124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKS-------LRWTVTDTSLSPDQRHLVYASMS  190 (372)
Q Consensus       124 ~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d  190 (372)
                      ..+...++|+| +.+.||+....|.-.||++....     .+.......+       .......+.|.++.+.|++++. 
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence            34677899999 56789999999999999992111     1111000001       1123447889888888887765 


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~  258 (372)
                      ..+.++|+++......  +...            .....|..+.-+|.  +..|+..+  ..|...++..
T Consensus       224 ~~l~~~d~~~~~~~~~--l~~~------------~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  224 SKLMLIDFESNWQTEY--LVTA------------KTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             CceEEEECCCCCccch--hccC------------CChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            5688999988765332  1110            12247888888876  33333322  5677777766

These proteins are found in fungi.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=85.04  E-value=18  Score=31.97  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=43.9

Q ss_pred             EEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcccc
Q 017421          150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG  229 (372)
Q Consensus       150 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  229 (372)
                      ++|+.+++.+..-..      -..+..|. ++++.++-+..|.+..+|.++|+...+.....                 .
T Consensus       189 vidv~s~evl~~GLs------mPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG-----------------~  244 (335)
T TIGR03032       189 VIDIPSGEVVASGLS------MPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG-----------------F  244 (335)
T ss_pred             EEEeCCCCEEEcCcc------CCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC-----------------C
Confidence            466666644433111      12334555 67888888889999999998888766655433                 4


Q ss_pred             EEEEEEcCCCCEEEEE
Q 017421          230 IFSLKFSTDGRELVAG  245 (372)
Q Consensus       230 i~~~~~sp~~~~l~s~  245 (372)
                      ...++|.  |+++++|
T Consensus       245 ~rGL~f~--G~llvVg  258 (335)
T TIGR03032       245 TRGLAFA--GDFAFVG  258 (335)
T ss_pred             Cccccee--CCEEEEE
Confidence            5566666  6666554

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.83  E-value=24  Score=30.99  Aligned_cols=93  Identities=17%  Similarity=0.270  Sum_probs=57.6

Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeEEEE
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLR  264 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------~dg~i~iwd~~~~~~~~~  264 (372)
                      ..|++||..+.+-.....                +-.+.|+.+.|..+.++++.|.      ....+-.||..+..- ..
T Consensus        16 ~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~   78 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SS   78 (281)
T ss_pred             CEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-ee
Confidence            468999988776433322                2335899999987667777664      345688999887653 22


Q ss_pred             eec-----CCCCeEEEEEeCCCCCEEE-EEe-C--CCeEEEEecc
Q 017421          265 ILA-----HTSDVNTVCFGDESGHLIY-SGS-D--DNLCKVNSVL  300 (372)
Q Consensus       265 ~~~-----~~~~v~~~~~sp~~~~~l~-s~~-~--dg~i~vwd~~  300 (372)
                      +.+     -.++|..+.+...++..+. .|. .  +..|..||=.
T Consensus        79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence            222     2468888887534554443 443 2  3457777754

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.67  E-value=0.091  Score=48.22  Aligned_cols=134  Identities=11%  Similarity=0.098  Sum_probs=90.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCe
Q 017421          172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDC  250 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~  250 (372)
                      .....|.|.+.-++.++.+..+..||-.........                  .......++|.-++..++ .+...+.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n------------------~tg~aldm~wDkegdvlavlAek~~p   98 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN------------------PTGKALDMAWDKEGDVLAVLAEKTGP   98 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceecccC------------------CchhHhhhhhccccchhhhhhhcCCC
Confidence            445678887777888888888888986544321111                  122456678887776554 4556788


Q ss_pred             EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEE
Q 017421          251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +.+||+.+......-.+....-.-+.|+ +.+..++.+...|.+.|++..+.+      .|...+++++|.+.+..+...
T Consensus        99 iylwd~n~eytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen   99 IYLWDVNSEYTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             eeechhhhhhHHHHhccCcchHHHHhhc-cCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            9999998653211111111122227898 888889999899999999987432      388899999999988776654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.06  E-value=1.3  Score=40.69  Aligned_cols=152  Identities=13%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEE-EEEEcCCCCEEEEEeC
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSS  247 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~sp~~~~l~s~s~  247 (372)
                      ...+..+-..|||+.+..-+. .++.++++.+...... +..+...+       +  ....|+ .+..-..|.-+.+++.
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg-------~--~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPG-------D--SRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCC-------c--hHHHHHHHHHHHhCceeEEEEcC
Confidence            346778889999999887765 6788998876543222 11111111       0  001121 1112234556778888


Q ss_pred             CCeEEEE-ECCCC-e----EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-----cCCCCCeeEEEecc
Q 017421          248 DDCIYVY-DLEAN-K----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-----TRSINPCNKYLFNP  316 (372)
Q Consensus       248 dg~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~v~~~~~s~  316 (372)
                      ||.|.-| |++.+ .    .++.++-....+..+.-. .+.+-+++-+..|++.++.....     ......+.-+++||
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp  367 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSP  367 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCc
Confidence            8888766 55433 2    111222122233333322 34456777778888877764321     12233567789999


Q ss_pred             CCCeEEEEeeeeEEEe
Q 017421          317 CNKYLIIYLILVISIY  332 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~  332 (372)
                      .+.++++-..+.++.+
T Consensus       368 ~~~~Ll~e~~gki~~~  383 (733)
T COG4590         368 NQAYLLSEDQGKIRLA  383 (733)
T ss_pred             ccchheeecCCceEEE
Confidence            9999988755555543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.03  E-value=48  Score=33.00  Aligned_cols=175  Identities=10%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCCce
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSGTM  203 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~  203 (372)
                      +.+-.+.|+.+..+ ++...+|+++||++..................|..+.+..+|  +++-..+|++.+-+ ......
T Consensus        84 ~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~  160 (829)
T KOG2280|consen   84 GELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKL  160 (829)
T ss_pred             CCeeeecccCCceE-EEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchh
Confidence            37888999988775 455788999999986432211101111122245555555555  34444455554433 222221


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCC-C--EEEEEe-CCCeEEEEECCCCe-EEEEeecCCCCeEEEEEe
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-R--ELVAGS-SDDCIYVYDLEANK-LSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~--~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s  278 (372)
                         .......           +...+-+|-...+++ +  .++-.. ..+ ..++...... ....+......+..+..|
T Consensus       161 ---~~~~diP-----------~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS  225 (829)
T KOG2280|consen  161 ---RKMPDIP-----------YNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVS  225 (829)
T ss_pred             ---hhCCCCC-----------CccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEc
Confidence               1111100           000111121111221 1  111111 011 1122222111 112222223567788999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCC
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCN  318 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g  318 (372)
                       |+.++|+.=...|.|.+-+...-+       ....+.-.++|.-+.
T Consensus       226 -~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  226 -PNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             -CCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence             899999998899999888776211       122334477887654

>PLN02193 nitrile-specifier protein

Probab=83.41  E-value=43  Score=31.95  Aligned_cols=138  Identities=13%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeec---ccCCcceEEEEECCCCCEEEEEeCCC-----eEEEEECCCC
Q 017421          135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG  201 (372)
Q Consensus       135 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~  201 (372)
                      ++++++.|+.+     ..+.+||+.+..-. .....   ..... -.++.. -++++++.|+.++     .+..||+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~-~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~  304 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPTPRS-FHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK  304 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCCCcc-ceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence            45666777654     35888898876322 11111   01111 112222 2456666776543     4677888776


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEEeec----CCCCeE
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA----HTSDVN  273 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~----~~~~v~  273 (372)
                      +-.........       +....+|    ..+.  -+++.++.++.+    ..+.+||+.+.+-...-..    ......
T Consensus       305 ~W~~~~~~~~~-------~~~R~~~----~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~  371 (470)
T PLN02193        305 KWFHCSTPGDS-------FSIRGGA----GLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF  371 (470)
T ss_pred             EEEeCCCCCCC-------CCCCCCc----EEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence            54322110000       0000011    1122  246677776654    4589999987754222110    111122


Q ss_pred             EEEEeCCCCCEEEEEeC
Q 017421          274 TVCFGDESGHLIYSGSD  290 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~  290 (372)
                      +++.  -++++++.|+.
T Consensus       372 ~~~~--~~~~iyv~GG~  386 (470)
T PLN02193        372 ASAA--VGKHIVIFGGE  386 (470)
T ss_pred             EEEE--ECCEEEEECCc
Confidence            2332  35677777775

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.28  E-value=24  Score=37.08  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG  156 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  156 (372)
                      .......++|+|.-.++|.+...|.|++|-...-
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecccce
Confidence            3456677899999999999999999999986543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.14  E-value=16  Score=38.41  Aligned_cols=157  Identities=13%  Similarity=0.272  Sum_probs=83.0

Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE--------ECCCCCEEEEEeCCCeEEEEECCC
Q 017421          130 SQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS--------LSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       130 ~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      +-+-| =++..++  .|..+.+|+.+++.....   ..+....|..+.        |-|.=+++++-+.--.|.++-+.-
T Consensus        84 mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~---~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~  158 (1311)
T KOG1900|consen   84 MGIFPEIGRAWIT--IDNNLFLWNYESDNELAE---YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF  158 (1311)
T ss_pred             eccchhhcceEEE--eCCeEEEEEcCCCCcccc---ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence            33444 3444444  567899999998644443   222222344333        223334444444444566654432


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE--EECCCC---e-E-------------
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV--YDLEAN---K-L-------------  261 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i--wd~~~~---~-~-------------  261 (372)
                      .+.........  .+.....     ....|+|+....+|+.+++|-. |.|+-  |....+   + +             
T Consensus       159 ~~~~~~~~~f~--~~~~i~~-----dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l  230 (1311)
T KOG1900|consen  159 DEFTGELSIFN--TSFKISV-----DGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSL  230 (1311)
T ss_pred             ccccCcccccc--cceeeec-----CCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence            21100000000  0000101     1237889998888988777764 43331  222211   1 1             


Q ss_pred             ---EEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          262 ---SLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       262 ---~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                         +..+. .+..+|..+... ...+.+.+-+..|+|.+||+.
T Consensus       231 vPs~~~~~~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  231 VPSLLSVPGSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             hhhhhcCCCCCCCcceeeEec-cccceeeeeccCceEEEEEcc
Confidence               11123 456799999998 778889999999999999986

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=82.57  E-value=29  Score=29.37  Aligned_cols=114  Identities=9%  Similarity=-0.015  Sum_probs=61.1

Q ss_pred             ccEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEE-EeCCCeEEEE
Q 017421          228 FGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVN  297 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s-~~~dg~i~vw  297 (372)
                      ...+.-..+|+|++++-.-.|         |.++.|-..  ..+..+...-.--+.++|+ .+.+.+.. -+.+-.|.-|
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd-~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWD-SDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCcccccc-ccCcEEEEEccCceEEeee
Confidence            356666778999985432222         223333221  1111222222333578898 66665554 4566677778


Q ss_pred             ecc--ccc--------------C-CCCCeeEEEeccCCCeEEEEeeeeEEEee-ceEEEeecccceEEEEEe
Q 017421          298 SVL--LLT--------------R-SINPCNKYLFNPCNKYLIIYLILVISIYS-PNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       298 d~~--~~~--------------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d-~~i~lw~~~~~~~~~~~~  351 (372)
                      |..  +..              . .....-.++...+|.+.++.       |+ +++...|..+|+.+..+.
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-------~ng~~V~~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-------FNGGTVQKVDPTTGKILLEIK  250 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-------ecCcEEEEECCCCCcEEEEEE
Confidence            743  111              1 11112334445555554444       55 778888999999888774

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=81.31  E-value=37  Score=29.79  Aligned_cols=118  Identities=20%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe------CCCeEEEEECCCCceeeecceeeccccccee
Q 017421          146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS  219 (372)
Q Consensus       146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  219 (372)
                      ..|++||..+.+-...   ..+-.+.|+++.|..+.++++.|.      ....+..||+.+........-..        
T Consensus        16 ~~lC~yd~~~~qW~~~---g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s--------   84 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSP---GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS--------   84 (281)
T ss_pred             CEEEEEECCCCEeecC---CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence            4599999887633222   334556899999997777777664      24568889988765422221000        


Q ss_pred             ccCCCCccccEEEEEEcC-CC-CEEEEEe-CC--CeEEEEECCCCeEEEE-eecCCCCeEEEEEe
Q 017421          220 AADDGGYSFGIFSLKFST-DG-RELVAGS-SD--DCIYVYDLEANKLSLR-ILAHTSDVNTVCFG  278 (372)
Q Consensus       220 ~~~~~~h~~~i~~~~~sp-~~-~~l~s~s-~d--g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s  278 (372)
                          ..-.++|..+.+.. |+ +..+.|. .+  ..|..||=.+...+.. .......|..+.+-
T Consensus        85 ----~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   85 ----NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             ----ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence                01123677777633 33 3444443 22  3477787666554443 22234455555554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.02  E-value=41  Score=30.10  Aligned_cols=109  Identities=10%  Similarity=0.010  Sum_probs=52.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeE---EEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCeEEEEECCCC
Q 017421          135 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG  201 (372)
Q Consensus       135 ~~~~l~~~~~d-----g~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~  201 (372)
                      ++.+++.|+.+     ..+..||+.+..-   ..................+  +++..+.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            46666777654     2566777766532   1111111111111112222  4666666664     245788888876


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCe
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANK  260 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg----~i~iwd~~~~~  260 (372)
                      +-..........               .....+...++++.+.|+.++    .+.+||.++.+
T Consensus       150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            543322111100               111111223466777776553    35688988765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=80.93  E-value=31  Score=28.70  Aligned_cols=56  Identities=20%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             CEEEEEeCCCeEEEEECCC--CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---C---eEEEE
Q 017421          240 RELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---N---LCKVN  297 (372)
Q Consensus       240 ~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g---~i~vw  297 (372)
                      ..|..+...+.|.+|++..  .+.+.++.. -+.|..+.++ ..|++|+|--.+   .   .+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~-~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYS-EAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEec-cccceEEEEEeecCCccceEEEEE
Confidence            3444445668899999983  345555553 3789999999 899999997533   2   56665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.90  E-value=69  Score=32.66  Aligned_cols=163  Identities=10%  Similarity=0.018  Sum_probs=86.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecc---------cCCcceEEEEECC--CCCEEEEEeC----------CCeEE
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAK---------SLRWTVTDTSLSP--DQRHLVYASM----------SPIVH  194 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~  194 (372)
                      +..++.++.|+.|.-.|.++++.+...-...         ........+.-.|  .+..+++|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            4578888899999999999987665421100         0000001112222  2345666642          68899


Q ss_pred             EEECCCCceeeecceeeccc------ccceeccCCCCccccEEEEEEcCCCCEEEEEe------------------CCCe
Q 017421          195 IVDVGSGTMESLANVTEIHD------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------SDDC  250 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------------------~dg~  250 (372)
                      -+|.++|+..-.........      +..+..    +..+.=..++++|...+++.+.                  ..+.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~----gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTR----NTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEecc----CCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence            99999999755443211110      000100    0000002234444443333221                  1345


Q ss_pred             EEEEECCCCeEEEEeecCCCCe---------EEEEEeCCCCC---EEEEEeCCCeEEEEecccc
Q 017421          251 IYVYDLEANKLSLRILAHTSDV---------NTVCFGDESGH---LIYSGSDDNLCKVNSVLLL  302 (372)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~v---------~~~~~sp~~~~---~l~s~~~dg~i~vwd~~~~  302 (372)
                      |.-.|.++|+....++.....+         .=+.+...+|+   .++.++.+|.+.+.|.++.
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG  479 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG  479 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence            7778888998776665311111         11223212553   7888899999999998743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-07
2h9l_A	329	Wdr5delta23 Length = 329		4e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		8e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-06

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    A      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 52  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 108
Query: 191 PIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 109 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 197

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 36  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 93  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 181

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 26  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 82
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 83  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 171

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 47  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 103
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 104 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 192

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 36  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 93  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 181

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 54  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 110
Query: 191 PIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 111 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 199

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 36  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 93  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 181

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 35  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 91
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 92  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 180

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 30  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 87  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 175

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 29  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 85
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 86  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 174

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 30  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 87  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 175

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 31  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 87
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 88  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 176

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
           PVD     A+   FS D      G    ++ I+ VE G   +K+    +    +   + S
Sbjct: 122 PVD-----AWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYS 173
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
           PD ++L   ++  I++I D+ +G    L +  E             G++  I SL FS D
Sbjct: 174 PDGKYLASGAIDGIINIFDIATG---KLLHTLE-------------GHAMPIRSLTFSPD 217
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
            + LV  S D  I +YD++   L+  +  H S V  V F  +  H 
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++       + AH+  V+ V F +  G LI S S D LC++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
            + ++D++       + AH+  V+ V F +  G LI S S D LC++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.81
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.8
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.77
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.49
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.45
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.44
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.43
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.39
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.31
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.26
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.24
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.23
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.23
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.21
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.21
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.16
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.14
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.12
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.07
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.0
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.97
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.96
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.9
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.85
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.78
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.7
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.68
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.68
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.66
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.65
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.63
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.6
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.45
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.33
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.32
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.23
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.22
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.22
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.21
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.21
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.2
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.17
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.15
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.08
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.07
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.06
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.03
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.99
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.86
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.82
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.73
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.7
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.66
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.63
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.61
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.6
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.58
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.47
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.41
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.36
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.31
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.28
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.26
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.12
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.97
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.96
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.96
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.94
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.84
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.78
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.56
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.44
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.16
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.06
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.05
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.04
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.03
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.85
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.69
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.68
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.5
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.47
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.38
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.27
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.15
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.01
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.7
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.7
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.46
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.22
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.2
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.18
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.86
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.28
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.14
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.0
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.88
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.47
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	83.32
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.73
3ott_A	758	Two-component system sensor histidine kinase; beta	82.67
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	81.7
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.02

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-36  Score=280.15  Aligned_cols=246  Identities=17%  Similarity=0.203  Sum_probs=215.6

Q ss_pred             eeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 017421           83 VKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE  154 (372)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  154 (372)
                      ...+.+|...     |++.+.+   .+.|..+++|+.........+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            4456666553     4444432   5567789999998888888899999999999999999999999999999999999


Q ss_pred             CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEE
Q 017421          155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK  234 (372)
Q Consensus       155 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  234 (372)
                      ++..+..   ..+|...|.+++|+|++++|++++.|+.|++||++++.+.....                +|...|.++.
T Consensus       181 ~~~~~~~---~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~----------------~h~~~v~~~~  241 (410)
T 1vyh_C          181 GFECIRT---MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----------------GHREWVRMVR  241 (410)
T ss_dssp             SSCEEEC---CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CCSSCEEEEE
T ss_pred             CCceeEE---EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----------------CCCccEEEEE
Confidence            8866654   56888899999999999999999999999999999987644332                5777999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC--------------------CCEEEEEeCCCeE
Q 017421          235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--------------------GHLIYSGSDDNLC  294 (372)
Q Consensus       235 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~--------------------~~~l~s~~~dg~i  294 (372)
                      |+|++++|++|+.|+.|++||+.++++...+.+|...|.+++|+ |+                    +.+|++|+.|+.|
T Consensus       242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i  320 (410)
T 1vyh_C          242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA-PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  320 (410)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-CSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEc-CcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999999999999999 54                    6799999999999


Q ss_pred             EEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          295 KVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       295 ~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      ++||+++      +.+|...|.+++|+|+|++|++++      .|++|++||+.+++.+..+.+|.
T Consensus       321 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s------~D~~i~vwd~~~~~~~~~~~~h~  380 (410)
T 1vyh_C          321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA------DDKTLRVWDYKNKRCMKTLNAHE  380 (410)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE------TTTEEEEECCTTSCCCEEEECCS
T ss_pred             EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCceEEEEcCCC
Confidence            9999873      447899999999999999999886      69999999999999999998884

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-35  Score=268.18  Aligned_cols=256  Identities=16%  Similarity=0.213  Sum_probs=216.0

Q ss_pred             CCCccccceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCC
Q 017421           75 KRHLPVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS  146 (372)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  146 (372)
                      ..+.+....+.+.+|...     +++++.+   .+.|..+++|+.........+..|...|.+++|+|++++|++|+.|+
T Consensus        40 ~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  119 (340)
T 1got_B           40 VGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred             cccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence            334455667778888764     4555543   56678899999888777778889999999999999999999999999


Q ss_pred             cEEEEeCCCCeE-EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCC
Q 017421          147 QIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG  225 (372)
Q Consensus       147 ~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
                      .|++|++.+... ........+|...|.++.|++++. +++++.|+.|++||+++++......                +
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~----------------~  182 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT----------------G  182 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC----------------C
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc----------------C
Confidence            999999986531 112223567888999999998765 8899999999999999887644332                5


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--
Q 017421          226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--  303 (372)
Q Consensus       226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--  303 (372)
                      |...|.+++|+|++++|++|+.|+.|++||++++.+...+.+|...|++++|+ |++++|++|+.|+.|++||++...  
T Consensus       183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEE
Confidence            77799999999999999999999999999999999999999999999999999 999999999999999999997432  


Q ss_pred             ------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          304 ------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       304 ------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                            .+...|++++|+|+|++|++++      .|+.|++||+.+++.+..+.+|.
T Consensus       262 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~------~d~~i~vwd~~~~~~~~~~~~h~  312 (340)
T 1got_B          262 MTYSHDNIICGITSVSFSKSGRLLLAGY------DDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEccCCcccceEEEEECCCCCEEEEEC------CCCeEEEEEcccCcEeeEeecCC
Confidence                  2345799999999999999986      68999999999999999998884

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=264.30  Aligned_cols=229  Identities=19%  Similarity=0.240  Sum_probs=202.9

Q ss_pred             ccCCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+.|..+++|++.....  .+.+.+|...|.+++|++++.++++++.|++|++||+.+++.+..   ...+...+.+++|
T Consensus        54 gs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~---~~~~~~~~~~~~~  130 (321)
T 3ow8_A           54 GSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAF  130 (321)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---EECCTTCCCCEEE
T ss_pred             EcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEE---EeCCCccEEEEEE
Confidence            56678899998875542  345789999999999999999999999999999999999877665   3456667899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      +|++++|++++.+|.|++|++++++......                .|...|.+++|+|++++|++|+.|+.|++||++
T Consensus       131 spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~----------------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~  194 (321)
T 3ow8_A          131 SPDSQYLATGTHVGKVNIFGVESGKKEYSLD----------------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIA  194 (321)
T ss_dssp             CTTSSEEEEECTTSEEEEEETTTCSEEEEEE----------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCCEEEEEcCCCcEEEEEcCCCceeEEec----------------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999999999999999887643322                345589999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      +++.+..+.+|..+|.+++|+ |++++|++++.|+.|++||++.      +.+|...|.+++|+|++++|++++      
T Consensus       195 ~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s------  267 (321)
T 3ow8_A          195 TGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS------  267 (321)
T ss_dssp             TTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------
T ss_pred             CCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe------
Confidence            999999999999999999999 9999999999999999999873      457899999999999999999886      


Q ss_pred             eeceEEEeecccceEEEEEeeeE
Q 017421          332 YSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      .|++|++||+.+++.+..+.+|.
T Consensus       268 ~D~~v~iwd~~~~~~~~~~~~h~  290 (321)
T 3ow8_A          268 SDKSVKVWDVGTRTCVHTFFDHQ  290 (321)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCcEEEEeCCCCEEEEEEcCCC
Confidence            79999999999999999998873

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-35  Score=261.90  Aligned_cols=237  Identities=14%  Similarity=0.137  Sum_probs=203.1

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR  169 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  169 (372)
                      |++++.+   .+.|..+++|+.........+..|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..   ..+|.
T Consensus        21 fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~---~~~h~   97 (304)
T 2ynn_A           21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAHP   97 (304)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECCS
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE---EeCCC
Confidence            4555543   55677899999877776777889999999999999999999999999999999999876665   56788


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCC
Q 017421          170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD  248 (372)
Q Consensus       170 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~d  248 (372)
                      ..|.+++|+|++++|++|+.|+.|++||++++.....  ..             .+|...|.+++|+| ++.+|++|+.|
T Consensus        98 ~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--~~-------------~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TF-------------EGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE--EE-------------CCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh--hh-------------cccCCcEEEEEECCCCCCEEEEEeCC
Confidence            8999999999999999999999999999987643211  11             15777999999999 67899999999


Q ss_pred             CeEEEEECCCCeEEEEee-cCCCCeEEEEEeC-CCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCe
Q 017421          249 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGD-ESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKY  320 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~  320 (372)
                      ++|++||++++.....+. .|...+..+.|+| +++.+|++++.|+.|++||+++      +.+|...|..++|+|++++
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  242 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence            999999998877665554 5668899999984 3788999999999999999873      4589999999999999999


Q ss_pred             EEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          321 LIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       321 l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      |++++      .|++|++||..+++.++.+.+|
T Consensus       243 l~s~s------~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          243 IISGS------EDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             EEEEE------TTSCEEEEETTTCCEEEEECCS
T ss_pred             EEEEc------CCCeEEEEECCCCceeeeccCC
Confidence            99886      7999999999999999998876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.4e-35  Score=265.27  Aligned_cols=223  Identities=13%  Similarity=0.084  Sum_probs=185.6

Q ss_pred             ccCCceeEeeeeeCCCCCcc----ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWP----VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.+..+++|+....+....    +.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..   ..+|...|.++
T Consensus        99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~---~~~h~~~V~~~  175 (344)
T 4gqb_B           99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS---YRAHAAQVTCV  175 (344)
T ss_dssp             EETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEE
T ss_pred             EECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCcCCceEEE
Confidence            55667889999877665443    348999999999999999999999999999999999977665   56888899999


Q ss_pred             EECCCCC-EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEE
Q 017421          176 SLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYV  253 (372)
Q Consensus       176 ~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~i  253 (372)
                      +|+|++. +|++++.|+.|++||+++++........              .|...+.+++|+|+ +++|++|+.||.|++
T Consensus       176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS--------------APGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             EecCCCCCceeeeccccccccccccccceeeeeecc--------------eeeccceeeeecCCCCcceEEeccCCcEEE
Confidence            9999875 7889999999999999988764433211              23457899999995 578899999999999


Q ss_pred             EECCCCeEEEEeecCCCCeEEEEEeCCCC-CEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeE-EEEee
Q 017421          254 YDLEANKLSLRILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYL-IIYLI  326 (372)
Q Consensus       254 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l-~~~~~  326 (372)
                      ||+++++++..+.+|...|++++|+ |++ ++|++|+.|++|+|||+++     +.+|...|++++|+|+++.+ ++++ 
T Consensus       242 wd~~~~~~~~~~~~h~~~v~~v~fs-p~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s-  319 (344)
T 4gqb_B          242 VDTKSTSCVLSSAVHSQCVTGLVFS-PHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG-  319 (344)
T ss_dssp             EESCC--CCEEEECCSSCEEEEEEC-SSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE-
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc-
Confidence            9999999999999999999999999 766 6899999999999999874     35899999999999998754 4555 


Q ss_pred             eeEEEeeceEEEeecccceE
Q 017421          327 LVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~~~~~  346 (372)
                           +|++|++|++.+...
T Consensus       320 -----~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          320 -----WDHQVVHHVVPTEPL  334 (344)
T ss_dssp             -----TTSCEEEEECCC---
T ss_pred             -----CCCeEEEEECCCCCC
Confidence                 799999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.8e-35  Score=259.46  Aligned_cols=213  Identities=15%  Similarity=0.133  Sum_probs=187.4

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|.+.|.+++|+|++++|++++.||.|++||+.++..+..   ...|..+|.++.|+|++++|++|+.|+.|++|
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS---IQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE---eeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            345778999999999999999999999999999999999876655   45677789999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV  275 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~  275 (372)
                      |+.+++......                +|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.++
T Consensus        83 d~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v  146 (304)
T 2ynn_A           83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (304)
T ss_dssp             ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred             ECCCCcEEEEEe----------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence            999987644333                57789999999999999999999999999999887 5567788999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEecc--CCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNP--CNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +|+|.++.+|++|+.|++|++||++...       .+...+..+.|+|  ++.+|++++      .|++|++||+.+++.
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s------~D~~i~iWd~~~~~~  220 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS------DDLTIKIWDYQTKSC  220 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE------TTSEEEEEETTTTEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc------CCCeEEEEeCCCCcc
Confidence            9995578999999999999999986322       4567889999987  677888886      699999999999999


Q ss_pred             EEEEeeeE
Q 017421          347 FYSFMVHI  354 (372)
Q Consensus       347 ~~~~~~h~  354 (372)
                      +..+.+|.
T Consensus       221 ~~~~~~h~  228 (304)
T 2ynn_A          221 VATLEGHM  228 (304)
T ss_dssp             EEEEECCS
T ss_pred             ceeeCCCC
Confidence            99999883

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-34  Score=261.83  Aligned_cols=257  Identities=18%  Similarity=0.204  Sum_probs=214.9

Q ss_pred             CCCccccceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCC
Q 017421           75 KRHLPVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS  146 (372)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  146 (372)
                      .........+.+.+|...     |++++.+   .+.|..+++|+..+......+..|...|.+++|+|++++|++|+.|+
T Consensus        49 ~~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           49 LGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             CCCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred             ccccccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence            334455667788888874     3555533   66677899999888877778888999999999999999999999999


Q ss_pred             cEEEEeCCCCeE---EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCC
Q 017421          147 QIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  223 (372)
Q Consensus       147 ~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (372)
                      .+++|++.....   .........|...|.++.|+|++..|++++.|+.|++||+++++......               
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------------  193 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------------  193 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------------
T ss_pred             CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---------------
Confidence            999999864311   01112244678889999999999999999999999999999987654433               


Q ss_pred             CCccccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          224 GGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       224 ~~h~~~i~~~~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                       +|...|.+++|+|  ++++|++|+.||.|++||+++++++..+.+|...|++++|+ |++.+|++++.|++|++||++.
T Consensus       194 -~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          194 -GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             -CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTT
T ss_pred             -CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECCC
Confidence             5777999999988  47899999999999999999999999999999999999999 9999999999999999999974


Q ss_pred             cc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          302 LT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       302 ~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      ..        .+...+.+++|+|+|++|+++.      .|++|++||+.+++.+..+.+|.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~------~d~~i~vwd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          272 DREVAIYSKESIIFGASSVDFSLSGRLLFAGY------NDYTINVWDVLKGSRVSILFGHE  326 (354)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCSEEEEECCCS
T ss_pred             CcEEEEEcCCCcccceeEEEEeCCCCEEEEEE------CCCcEEEEECCCCceEEEEECCC
Confidence            32        2345789999999999999886      68999999999999998888873

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=259.02  Aligned_cols=217  Identities=23%  Similarity=0.253  Sum_probs=193.6

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.|..+++|+.........+..|...+.+++|+|++++|++|+.||.|++|++.++.....   ...+...|.+++|+|
T Consensus        98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~---~~~~~~~v~~~~~sp  174 (321)
T 3ow8_A           98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS---LDTRGKFILSIAYSP  174 (321)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE---EECSSSCEEEEEECT
T ss_pred             EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE---ecCCCceEEEEEECC
Confidence            56678899999877777777888999999999999999999999999999999998866554   445666899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      ++++|++++.||.|++||+++++......                +|..+|.+++|+|++++|++++.|+.|++||++++
T Consensus       175 dg~~lasg~~dg~i~iwd~~~~~~~~~~~----------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          175 DGKYLASGAIDGIINIFDIATGKLLHTLE----------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEEC----------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            99999999999999999999887644332                47779999999999999999999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      +....+.+|...|.+++|+ |++.+|++++.|++|++||+++      +..|...|.+++|+|+|++|++++      .|
T Consensus       239 ~~~~~~~~h~~~v~~~~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~------~d  311 (321)
T 3ow8_A          239 NLAGTLSGHASWVLNVAFC-PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG------DD  311 (321)
T ss_dssp             CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TT
T ss_pred             ceeEEEcCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe------CC
Confidence            9999999999999999999 9999999999999999999873      447899999999999999999886      68


Q ss_pred             ceEEEeecc
Q 017421          334 PNILLDNYF  342 (372)
Q Consensus       334 ~~i~lw~~~  342 (372)
                      ++|++||+.
T Consensus       312 ~~i~vwd~p  320 (321)
T 3ow8_A          312 QEIHIYDCP  320 (321)
T ss_dssp             CCEEEEECC
T ss_pred             CeEEEEeCC
Confidence            999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-34  Score=264.69  Aligned_cols=212  Identities=18%  Similarity=0.166  Sum_probs=191.6

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|..+|++++|+|++++|++|+.||+|+|||+.++.....   ..+|...|.+++|+|++++|++|+.|+.|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~---l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE---EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            456789999999999999999999999999999999998866554   56888899999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      |+.++++.....                +|...|.+++|+|++++|++|+.|++|++||++++.++..+.+|...|.++.
T Consensus       178 d~~~~~~~~~~~----------------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~  241 (410)
T 1vyh_C          178 DFQGFECIRTMH----------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  241 (410)
T ss_dssp             ETTSSCEEECCC----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             eCCCCceeEEEc----------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence            998877543332                5778999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccC--------------------CCeEEEEeeeeEE
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPC--------------------NKYLIIYLILVIS  330 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~--------------------g~~l~~~~~~~~~  330 (372)
                      |+ +++.+|++|+.|+.|++||+++      +..|...|.+++|+|+                    |.+|++++     
T Consensus       242 ~~-~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-----  315 (410)
T 1vyh_C          242 PN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-----  315 (410)
T ss_dssp             EC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-----
T ss_pred             EC-CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-----
Confidence            99 9999999999999999999873      4578899999999997                    56788776     


Q ss_pred             EeeceEEEeecccceEEEEEeeeE
Q 017421          331 IYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                       .|++|++||+.+++.+..+.+|.
T Consensus       316 -~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          316 -RDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             -TTSEEEEEETTTTEEEEEEECCS
T ss_pred             -CCCeEEEEECCCCceEEEEECCC
Confidence             68999999999999999998874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-33  Score=249.40  Aligned_cols=211  Identities=24%  Similarity=0.331  Sum_probs=189.1

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|...|++++|+|++++|++++.||.|++|++.++.....   ..+|...|.+++|+|++++|++++.|+.|++||
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            45678999999999999999999999999999999988866554   557888999999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      +++++......                +|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|
T Consensus        94 ~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A           94 VSSGKCLKTLK----------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             TTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CCCCcEEEEEc----------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            99887644332                46779999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      + +++++|++++.|+.|++||+++.       ..+..++..++|+|++++|++++      .|+.|++||+.+++.+..+
T Consensus       158 ~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          158 N-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYSKGKCLKTY  230 (312)
T ss_dssp             C-TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE------TTTEEEEEETTTTEEEEEE
T ss_pred             c-CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc------CCCeEEEEECCCCcEEEEE
Confidence            9 99999999999999999999743       24567899999999999999886      6899999999999999888


Q ss_pred             eeeE
Q 017421          351 MVHI  354 (372)
Q Consensus       351 ~~h~  354 (372)
                      .+|.
T Consensus       231 ~~~~  234 (312)
T 4ery_A          231 TGHK  234 (312)
T ss_dssp             CSSC
T ss_pred             EecC
Confidence            7763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=257.32  Aligned_cols=208  Identities=11%  Similarity=0.098  Sum_probs=175.9

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.+... ....+|...|++++|+|++++|++|+.|+.|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            456789999999985 6889999999999999987654332 23457888999999999999999999999999999999


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCF  277 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~  277 (372)
                      ++......                +|...|++++|+|++ .+|++++.|++|++||++++++...+.  .|...+.+++|
T Consensus       159 ~~~~~~~~----------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  222 (344)
T 4gqb_B          159 QVVLSSYR----------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW  222 (344)
T ss_dssp             TEEEEEEC----------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred             CcEEEEEc----------------CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeee
Confidence            87654433                688899999999998 478999999999999999998877764  45667999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCC-CeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCN-KYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +|.++++|++|+.||.|++||+++      +..|...|++++|+|+| ++|++++      .|++|++||+.+++.+ .+
T Consensus       223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs------~D~~i~vwd~~~~~~~-~~  295 (344)
T 4gqb_B          223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS------EDCSLAVLDSSLSELF-RS  295 (344)
T ss_dssp             CSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE------TTSCEEEECTTCCEEE-EE
T ss_pred             cCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe------CCCeEEEEECCCCcEE-EE
Confidence            966788999999999999999973      45899999999999998 5677775      6999999999988755 45


Q ss_pred             eee
Q 017421          351 MVH  353 (372)
Q Consensus       351 ~~h  353 (372)
                      .+|
T Consensus       296 ~~H  298 (344)
T 4gqb_B          296 QAH  298 (344)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            666

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.3e-34  Score=258.12  Aligned_cols=227  Identities=9%  Similarity=0.065  Sum_probs=182.0

Q ss_pred             ccCCceeEeeeeeCCCCCc----cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLPVNGPW----PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.+..+++|+........    ...+|...|++++|+|++++|++|+.|+.|++||+.++..+..   ...|...|.++
T Consensus       111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~---~~~h~~~v~~v  187 (357)
T 4g56_B          111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS---YNAHSSEVNCV  187 (357)
T ss_dssp             EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEE
T ss_pred             EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCCCCCEEEE
Confidence            5566778899877655332    3458999999999999999999999999999999999876665   56788899999


Q ss_pred             EECCCCC-EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEE
Q 017421          176 SLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYV  253 (372)
Q Consensus       176 ~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~i  253 (372)
                      +|+|++. ++++++.|+.|++||+++++........              .|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus       188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~--------------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC--------------ASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT--------------TCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             EEccCCCceeeeeccCCceEEEECCCCceeeeeeec--------------cccccccchhhhhcccceEEEeecccceeE
Confidence            9999875 7899999999999999988754332211              24568999999997 468899999999999


Q ss_pred             EECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-----cCCCCCeeEEEecc-CCCeEEEEeee
Q 017421          254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-----TRSINPCNKYLFNP-CNKYLIIYLIL  327 (372)
Q Consensus       254 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~v~~~~~s~-~g~~l~~~~~~  327 (372)
                      ||+++++++..+.+|...|++++|+|..+++|++|+.|++|+|||+++.     .+|...|++++|+| ++++|++++  
T Consensus       254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s--  331 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVG--  331 (357)
T ss_dssp             EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEE--
T ss_pred             EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEc--
Confidence            9999999999999999999999999444578999999999999999743     37899999999998 788998886  


Q ss_pred             eEEEeeceEEEeecccceEEEE
Q 017421          328 VISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                          +|++|++|++.+......
T Consensus       332 ----~Dg~v~iW~~~~~~~~~~  349 (357)
T 4g56_B          332 ----WDHKVLHHHLPSEGRTEN  349 (357)
T ss_dssp             ----TTSCEEEEECC-------
T ss_pred             ----CCCeEEEEECCCCCcccc
Confidence                799999999976554443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=254.57  Aligned_cols=203  Identities=21%  Similarity=0.268  Sum_probs=175.5

Q ss_pred             cccCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          119 PVDQTTS-RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       119 ~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      .+.+|.. .|++++|+|+|++||+|+.|++|+||++.++..........+|...|.+++|+|++++|++++.|+.+++||
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~   89 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK   89 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence            4567877 899999999999999999999999999988765544444578889999999999999999999999999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEeecCCCCeEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDVNT  274 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~  274 (372)
                      +..+.......+              .+|...|.+++|+|++++|++++.|+.|++||++++   .++..+.+|...|.+
T Consensus        90 ~~~~~~~~~~~~--------------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  155 (345)
T 3fm0_A           90 KNQDDFECVTTL--------------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH  155 (345)
T ss_dssp             ECCC-EEEEEEE--------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred             ccCCCeEEEEEc--------------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence            987653222221              157789999999999999999999999999999876   356677889999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      ++|+ |++++|++++.|+.|++||++        ++.+|...|++++|+|+|++|++++      .|++|++|+..
T Consensus       156 ~~~~-p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s------~D~~v~iW~~~  224 (345)
T 3fm0_A          156 VVWH-PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS------DDRTVRIWRQY  224 (345)
T ss_dssp             EEEC-SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEEEE
T ss_pred             EEEC-CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe------CCCeEEEeccc
Confidence            9999 999999999999999999986        3458899999999999999999886      68888999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4e-33  Score=252.07  Aligned_cols=192  Identities=15%  Similarity=0.113  Sum_probs=158.3

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCCC---CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK  166 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  166 (372)
                      |++++.+   .+.|..+++|+......   .....+|...|.+++|+|++++|++|+.|++|+||++..+.. .......
T Consensus        24 ~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~  102 (345)
T 3fm0_A           24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLE  102 (345)
T ss_dssp             ECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEcc
Confidence            4555543   56678899998876532   123468999999999999999999999999999999987632 1223366


Q ss_pred             cCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       167 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      +|...|.+++|+|++++|++++.|+.|++||+.++..........             +|...|.+++|+|++++|++++
T Consensus       103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~l~s~s  169 (345)
T 3fm0_A          103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-------------SHTQDVKHVVWHPSQELLASAS  169 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-------------CCCSCEEEEEECSSSSCEEEEE
T ss_pred             CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-------------CcCCCeEEEEECCCCCEEEEEe
Confidence            888899999999999999999999999999998765322222111             4677999999999999999999


Q ss_pred             CCCeEEEEECCCCe--EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          247 SDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       247 ~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      .|+.|++||+++++  +...+.+|...|++++|+ |++++|++++.|++|++||.
T Consensus       170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEecc
Confidence            99999999998875  456788999999999999 99999999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-33  Score=256.48  Aligned_cols=235  Identities=20%  Similarity=0.220  Sum_probs=195.5

Q ss_pred             cCCCCcc--ccCCceeEeeeeeCCCCCccccCC------------------CCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421           93 YSGRGRF--SAADCCHMLSRYLPVNGPWPVDQT------------------TSRAYVSQFSADGSLFVAGFQASQIRIYD  152 (372)
Q Consensus        93 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  152 (372)
                      |++++.+  .+.++.+.+|+.........+..|                  ...|.+++|+|++++|++|+.|+.|+|||
T Consensus        72 fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd  151 (393)
T 1erj_A           72 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD  151 (393)
T ss_dssp             ECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            5566554  344566777776554443334333                  23499999999999999999999999999


Q ss_pred             CCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEE
Q 017421          153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS  232 (372)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  232 (372)
                      +.+++.+..   ..+|...|.+++|+|++++|++++.|+.|++||+++++......                 +...+.+
T Consensus       152 ~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----------------~~~~v~~  211 (393)
T 1erj_A          152 IENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-----------------IEDGVTT  211 (393)
T ss_dssp             TTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----------------CSSCEEE
T ss_pred             CCCCcEEEE---EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-----------------cCCCcEE
Confidence            998866554   56888899999999999999999999999999999887643332                 2347999


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEe-------ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---
Q 017421          233 LKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI-------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---  301 (372)
Q Consensus       233 ~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---  301 (372)
                      ++|+| ++++|++|+.|+.|++||+++++.+..+       .+|...|++++|+ |++++|++|+.|+.|++||++.   
T Consensus       212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANN  290 (393)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC-----
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCC
Confidence            99999 8999999999999999999999877766       5788999999999 9999999999999999999863   


Q ss_pred             ---------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          302 ---------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       302 ---------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                                     +.+|...|.+++|+|++++|++++      .|+.|++||..+++.+..+.+|.
T Consensus       291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs------~D~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS------KDRGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGGCEEEEEE------TTSEEEEEETTTCCEEEEEECCS
T ss_pred             cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe------CCCeEEEEECCCCeEEEEECCCC
Confidence                           236888899999999999999886      68999999999999999998883

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-32  Score=248.19  Aligned_cols=211  Identities=16%  Similarity=0.187  Sum_probs=183.6

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..   ...|...|.+++|+|++++|++++.|+.|++|
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE---EECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE---eecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            345789999999999999999999999999999999998876654   45677789999999999999999999999999


Q ss_pred             ECCCCceeee-cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          197 DVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       197 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      ++.++..... ....             .+|...|.++.|+|++. +++++.|+.|++||+++++.+..+.+|...|.++
T Consensus       125 ~~~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          125 NLKTREGNVRVSREL-------------AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             ETTTCSBSCEEEEEE-------------ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             ECccCCCcceeEEEe-------------cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence            9987642111 1111             15777999999998875 8899999999999999999999999999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      +|+ |++++|++|+.|+.|++||++.      +..|...|++++|+|++++|++++      .|++|++||+.+++.+..
T Consensus       191 ~~~-~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~d~~v~iwd~~~~~~~~~  263 (340)
T 1got_B          191 SLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS------DDATCRLFDLRADQELMT  263 (340)
T ss_dssp             EEC-TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEEE
T ss_pred             EEC-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc------CCCcEEEEECCCCcEEEE
Confidence            999 8999999999999999999873      457899999999999999999886      689999999998887765


Q ss_pred             Ee
Q 017421          350 FM  351 (372)
Q Consensus       350 ~~  351 (372)
                      +.
T Consensus       264 ~~  265 (340)
T 1got_B          264 YS  265 (340)
T ss_dssp             EC
T ss_pred             Ec
Confidence            53

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-32  Score=243.87  Aligned_cols=212  Identities=16%  Similarity=0.149  Sum_probs=182.3

Q ss_pred             cccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      .+.+|.+.|++++|+|++ ++|++|+.|++|++|++....  .........+|...|.+++|+|++++|++++.|+.|++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            468999999999999965 899999999999999986421  11223346688889999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      ||+.+++......                +|...|.+++|+|++.+|++|+.|++|++||++ ++++..+.+|...|.++
T Consensus        92 wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~  154 (319)
T 3frx_A           92 WDVATGETYQRFV----------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV  154 (319)
T ss_dssp             EETTTTEEEEEEE----------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred             EECCCCCeeEEEc----------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence            9999987644332                577899999999999999999999999999997 55677888999999999


Q ss_pred             EEeCC-----CCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          276 CFGDE-----SGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       276 ~~sp~-----~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +|+|.     ++..|++++.|+.|++||++.      +.+|...|.+++|+|+|++|++++      .|+.|++||+.++
T Consensus       155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~------~dg~i~iwd~~~~  228 (319)
T 3frx_A          155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG------KDGEIMLWNLAAK  228 (319)
T ss_dssp             EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE------TTCEEEEEETTTT
T ss_pred             EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCC
Confidence            99932     455899999999999999974      347999999999999999999886      6899999999999


Q ss_pred             eEEEEEeee
Q 017421          345 RTFYSFMVH  353 (372)
Q Consensus       345 ~~~~~~~~h  353 (372)
                      +.+..+..|
T Consensus       229 ~~~~~~~~~  237 (319)
T 3frx_A          229 KAMYTLSAQ  237 (319)
T ss_dssp             EEEEEEECC
T ss_pred             cEEEEecCC
Confidence            988887655

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.6e-33  Score=254.00  Aligned_cols=244  Identities=18%  Similarity=0.229  Sum_probs=182.8

Q ss_pred             ccceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCE-------------
Q 017421           80 VSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSL-------------  138 (372)
Q Consensus        80 ~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------------  138 (372)
                      ....+.+.+|...     |++.+.+   .+.|..+++|+.........+..|...|.+++|+|++++             
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            3455667777763     4555533   556677888886655444445555555555555555544             


Q ss_pred             -------------------------------------EEEEeCCCcEEEEeCCCCeEEEEe--eecccCCcceEEEEECC
Q 017421          139 -------------------------------------FVAGFQASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       139 -------------------------------------l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~  179 (372)
                                                           |++|+.|++|++||+.++..+...  ....+|...|.++.|++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence                                                 455555555555555555443322  11246777899999987


Q ss_pred             -CCCEEEEEeCCCeEEEEECCCC-ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          180 -DQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       180 -~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                       ++++|++|+.|+.|++||++.. .......                +|...|++++|+|++++|++|+.|++|++||++
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~----------------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYH----------------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEEC----------------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEEC----------------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence             8899999999999999999743 3222211                577899999999999999999999999999999


Q ss_pred             CCeEEEEeecCC-------CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------c----cCCCCCeeEEEeccCCCe
Q 017421          258 ANKLSLRILAHT-------SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------L----TRSINPCNKYLFNPCNKY  320 (372)
Q Consensus       258 ~~~~~~~~~~~~-------~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~----~~~~~~v~~~~~s~~g~~  320 (372)
                      +++++..+..+.       ..|++++|+ |+|++|++|+.||.|++||+..      +    ..|...|++++|+|+|++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFS-ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEEC-SSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred             CCcEEEEecccccccccccCceEEEEEC-CCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence            999888876543       248999999 9999999999999999999752      1    468899999999999999


Q ss_pred             EEEEeeeeEEEeeceEEEeecccceE
Q 017421          321 LIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       321 l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      |++++      +|++|++|++...+.
T Consensus       359 l~sgs------~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          359 LCTGS------WDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEEEC------TTSCEEEEECCSSSS
T ss_pred             EEEee------CCCCEEEEecCCCcc
Confidence            99997      899999999887653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.3e-32  Score=240.90  Aligned_cols=222  Identities=14%  Similarity=0.138  Sum_probs=181.8

Q ss_pred             ccCCceeEeeeeeCC--CCCccccCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.|..+++|+....  .....+.+|.+.|++++|+|+  +++|++|+.|++|+|||+.++... .......|...|.++
T Consensus        27 ~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v  105 (297)
T 2pm7_B           27 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSV  105 (297)
T ss_dssp             EETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEE
T ss_pred             EeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEE
Confidence            566778999987643  345678899999999999874  899999999999999999876321 112245678889999


Q ss_pred             EECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-------------CC
Q 017421          176 SLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-------------GR  240 (372)
Q Consensus       176 ~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-------------~~  240 (372)
                      +|+|+  +.+|++++.|+.|++||++++...... ...             +|...|.+++|+|+             ++
T Consensus       106 ~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-~~~-------------~h~~~v~~~~~~p~~~~~~~~~~~~~~~~  171 (297)
T 2pm7_B          106 QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-IID-------------AHAIGVNSASWAPATIEEDGEHNGTKESR  171 (297)
T ss_dssp             EECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-EEE-------------CCSSCEEEEEECCCC------------CC
T ss_pred             EeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-eee-------------cccCccceEeecCCcccccccCCCCCCcc
Confidence            99997  889999999999999999876421111 111             46779999999997             57


Q ss_pred             EEEEEeCCCeEEEEECCCCe----EEEEeecCCCCeEEEEEeCCC---CCEEEEEeCCCeEEEEecccc-----------
Q 017421          241 ELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVNSVLLL-----------  302 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~---~~~l~s~~~dg~i~vwd~~~~-----------  302 (372)
                      +|++|+.|++|++||+++++    ....+.+|...|.+++|+ |+   +.+|++++.|++|++||++..           
T Consensus       172 ~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s-p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~  250 (297)
T 2pm7_B          172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKE  250 (297)
T ss_dssp             EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred             eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC-CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeec
Confidence            99999999999999998765    566788999999999999 76   589999999999999998641           


Q ss_pred             cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          303 TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       303 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      ..+...|.+++|+|+|++|++++      .|+.|++|+...
T Consensus       251 ~~~~~~v~~~~~s~~g~~las~~------~D~~v~lw~~~~  285 (297)
T 2pm7_B          251 EKFPDVLWRASWSLSGNVLALSG------GDNKVTLWKENL  285 (297)
T ss_dssp             SCCSSCEEEEEECSSSCCEEEEE------TTSCEEEEEECT
T ss_pred             ccCCCcEEEEEECCCCCEEEEEc------CCCcEEEEEECC
Confidence            25678899999999999999886      689999998763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-32  Score=266.68  Aligned_cols=235  Identities=16%  Similarity=0.152  Sum_probs=195.7

Q ss_pred             ccCCCCcc--ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC
Q 017421           92 NYSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR  169 (372)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  169 (372)
                      .|++++..  .+.+..+.+|+.........+.+|...|++++|+|+|++||+|+.|++|+|||+.++..... .....|.
T Consensus        25 ~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~  103 (611)
T 1nr0_A           25 GNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFS  103 (611)
T ss_dssp             EECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSS
T ss_pred             eeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee-EeecccC
Confidence            35565543  34456788888776677778899999999999999999999999999999999975432221 1245778


Q ss_pred             cceEEEEECCCCCEEEEEeCC----CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EEEE
Q 017421          170 WTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVA  244 (372)
Q Consensus       170 ~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s  244 (372)
                      .+|.+++|+|+++.|++++.+    +.|++||.  +......                .+|...|++++|+|++. .|++
T Consensus       104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l----------------~gh~~~v~~v~f~p~~~~~l~s  165 (611)
T 1nr0_A          104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL----------------TGQARAMNSVDFKPSRPFRIIS  165 (611)
T ss_dssp             SCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC----------------CCCSSCEEEEEECSSSSCEEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCccee----------------cCCCCCceEEEECCCCCeEEEE
Confidence            899999999999999998865    46888874  3322111                16888999999999986 6999


Q ss_pred             EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------c-c------CCCCCeeE
Q 017421          245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------L-T------RSINPCNK  311 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~-~------~~~~~v~~  311 (372)
                      ++.|++|++||..++++...+.+|...|.+++|+ |+|++|++++.|++|++||+.+      + .      .|...|.+
T Consensus       166 ~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~  244 (611)
T 1nr0_A          166 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG  244 (611)
T ss_dssp             EETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred             EeCCCeEEEEECCCCeEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEE
Confidence            9999999999999999999999999999999999 9999999999999999999753      2 2      68899999


Q ss_pred             EEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          312 YLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      ++|+|+|++|++++      .|++|++||+.+++.+..+..
T Consensus       245 v~~spdg~~l~s~s------~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          245 LTWSPDGTKIASAS------ADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             EEECTTSSEEEEEE------TTSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEe------CCCeEEEEeCCCCceeeeecC
Confidence            99999999999886      799999999999998877653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.7e-32  Score=240.63  Aligned_cols=224  Identities=12%  Similarity=0.148  Sum_probs=189.6

Q ss_pred             ccCCceeEeeeeeCCCC-----CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421          100 SAADCCHMLSRYLPVNG-----PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  174 (372)
                      .+.|..+++|+......     ...+.+|...|.+++|+|++++|++|+.|++|+|||+.+++.+..   ..+|...|.+
T Consensus        36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~---~~~h~~~v~~  112 (319)
T 3frx_A           36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMS  112 (319)
T ss_dssp             EETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEE
T ss_pred             ecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE---EccCCCcEEE
Confidence            56677888998764332     346789999999999999999999999999999999999976655   5678889999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC------CCEEEEEeCC
Q 017421          175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD------GRELVAGSSD  248 (372)
Q Consensus       175 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~------~~~l~s~s~d  248 (372)
                      ++|+|++++|++++.|+.|++||++..... ...                +|...|.++.|+|.      +..|++++.|
T Consensus       113 ~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~-~~~----------------~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d  175 (319)
T 3frx_A          113 VDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLL----------------GHNDWVSQVRVVPNEKADDDSVTIISAGND  175 (319)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEETTSCEEE-EEC----------------CCSSCEEEEEECCC------CCEEEEEETT
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeEE-EEe----------------ccCCcEEEEEEccCCCCCCCccEEEEEeCC
Confidence            999999999999999999999999754321 111                47779999999985      4589999999


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEE
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLII  323 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~  323 (372)
                      +.|++||+++.+....+.+|...|.+++|+ |++++|++++.||.|++||++..+     .+...|.+++|+|++.+|++
T Consensus       176 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~  254 (319)
T 3frx_A          176 KMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA  254 (319)
T ss_dssp             SCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEE
T ss_pred             CEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEE
Confidence            999999999999999999999999999999 999999999999999999997432     34568999999999999998


Q ss_pred             EeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          324 YLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       324 ~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      +.       +..+++|++.....+..+.
T Consensus       255 ~~-------~~~i~v~~~~~~~~~~~~~  275 (319)
T 3frx_A          255 AT-------ATGIKVFSLDPQYLVDDLR  275 (319)
T ss_dssp             EE-------TTEEEEEEETTEEEEEEEC
T ss_pred             Ec-------CCCcEEEEeCcCeeeeccC
Confidence            84       5567788877766655543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-32  Score=245.85  Aligned_cols=216  Identities=13%  Similarity=0.109  Sum_probs=182.8

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|...|++++|+|++++|++|+.||+|+|||..++.....   ...|...|.+++|+|++..+++++.|+.+++|
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~---~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA---VTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE---EecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            356789999999999999999999999999999999988866554   33456679999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      ++..............     +     .+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+++
T Consensus       134 ~~~~~~~~~~~~~~~~-----~-----~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~  203 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKS-----V-----AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD  203 (354)
T ss_dssp             ECCCCTTCCSGGGCEE-----E-----EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEecccccccccccee-----e-----eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence            9875432111110000     0     14777999999999999999999999999999999999999999999999999


Q ss_pred             EeCC-CCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          277 FGDE-SGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       277 ~sp~-~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      |+|. ++++|++|+.||.|++||+++      +..|...|++++|+|++.+|++++      .|++|++||+..++.+..
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS------DDATCRLYDLRADREVAI  277 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEEE
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe------CCCeEEEEECCCCcEEEE
Confidence            9843 578999999999999999874      457899999999999999999886      689999999988876655


Q ss_pred             Ee
Q 017421          350 FM  351 (372)
Q Consensus       350 ~~  351 (372)
                      +.
T Consensus       278 ~~  279 (354)
T 2pbi_B          278 YS  279 (354)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.1e-33  Score=254.75  Aligned_cols=216  Identities=14%  Similarity=0.137  Sum_probs=184.3

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.....   ...|...|.+++|+|++++|++++.|+.+++||
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~---~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA---IKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE---EECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE---EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            45789999999999999999999999999999999999876654   456777899999999999999999999999999


Q ss_pred             CCCCceeeec-ceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEe-----ecCCC
Q 017421          198 VGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI-----LAHTS  270 (372)
Q Consensus       198 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~  270 (372)
                      +.+....... ....          ...+|...|.++.|+|++ ..|++|+.|++|++||+++++.+..+     .+|..
T Consensus       137 ~~~~~~~~~~~~~~~----------~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          137 LSSQADRDGNMPVSR----------VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CCCCSSCCCSSTTCC----------BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             CCCCccccCCcccee----------eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            9764321100 0000          012688899999999974 57999999999999999999988777     57899


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      .|.+++|+|+++++|++|+.|+.|++||++       .+.+|...|.+++|+|+|++|++++      .|++|++||+.+
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~i~lwd~~~  280 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS------DDGTCRLFDMRT  280 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC------SSSCEEEEETTT
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc------CCCeEEEEECCC
Confidence            999999996799999999999999999986       2347899999999999999999987      799999999999


Q ss_pred             ceEEEEEee
Q 017421          344 LRTFYSFMV  352 (372)
Q Consensus       344 ~~~~~~~~~  352 (372)
                      ++.+..+..
T Consensus       281 ~~~~~~~~~  289 (380)
T 3iz6_a          281 GHQLQVYNR  289 (380)
T ss_dssp             TEEEEEECC
T ss_pred             CcEEEEecc
Confidence            988877654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-31  Score=236.44  Aligned_cols=246  Identities=20%  Similarity=0.166  Sum_probs=202.1

Q ss_pred             eeeeecccC-----ccCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 017421           83 VKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE  154 (372)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~  154 (372)
                      ...+.+|..     .+++.+.+   .+.+..+++|..........+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            444555544     24555543   5567788899887777777788999999999999999999999999999999999


Q ss_pred             CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEE
Q 017421          155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK  234 (372)
Q Consensus       155 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  234 (372)
                      ++..+..   ..+|...|.++.|+|++++|++++.|+.|++||+++++......                .|..+|.+++
T Consensus        96 ~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------~~~~~v~~~~  156 (312)
T 4ery_A           96 SGKCLKT---LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------------AHSDPVSAVH  156 (312)
T ss_dssp             TCCEEEE---EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEE
T ss_pred             CCcEEEE---EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec----------------CCCCcEEEEE
Confidence            8876654   55788889999999999999999999999999999887643332                4667899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCC
Q 017421          235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSIN  307 (372)
Q Consensus       235 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~  307 (372)
                      |+|++++|++++.|+.|++||+++++.+..+. .+...+.+++|+ |++++|++++.|+.|++||++..      ..|..
T Consensus       157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence            99999999999999999999999998877664 466789999999 99999999999999999999743      24443


Q ss_pred             Ce--eEEEe-ccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          308 PC--NKYLF-NPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       308 ~v--~~~~~-s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      .+  ....| .+++.+|++++      .|+.|++||+.+++.+..+.+|.
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGS------EDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECC------TTSCEEEEETTTCCEEEEECCCS
T ss_pred             ceEEEEEEEEeCCCcEEEEEC------CCCEEEEEECCCchhhhhhhccC
Confidence            32  22334 46788888876      68999999999999999998883

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.7e-31  Score=238.94  Aligned_cols=222  Identities=16%  Similarity=0.178  Sum_probs=184.3

Q ss_pred             ccCCceeEeeeeeCCCC-------CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421          100 SAADCCHMLSRYLPVNG-------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV  172 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  172 (372)
                      .+.|..+++|+......       ...+.+|...|.+++|+|++.+|++|+.|++|++||+.++..+..   ..+|...|
T Consensus        45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~h~~~v  121 (343)
T 2xzm_R           45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR---FVGHQSEV  121 (343)
T ss_dssp             EETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE---EECCCSCE
T ss_pred             EcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE---EcCCCCcE
Confidence            55677899998865432       235689999999999999999999999999999999999876654   55788899


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC----------CEE
Q 017421          173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG----------REL  242 (372)
Q Consensus       173 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~----------~~l  242 (372)
                      .+++|+|++++|++++.|+.|++||+.........              ...+|...|.+++|+|++          .+|
T Consensus       122 ~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l  187 (343)
T 2xzm_R          122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA--------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYF  187 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC--------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee--------------cccCCCceeeeeeeccccccccccCCCCCEE
Confidence            99999999999999999999999999743221111              011467799999999987          789


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEecc
Q 017421          243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNP  316 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~  316 (372)
                      ++++.|+.|++||. +.+....+.+|...|.+++|+ |+|++|++|+.|+.|++||++...      .+...|.+++|+|
T Consensus       188 ~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp  265 (343)
T 2xzm_R          188 ASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP  265 (343)
T ss_dssp             EEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECS
T ss_pred             EEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECC
Confidence            99999999999994 567778888999999999999 999999999999999999985221      3556799999999


Q ss_pred             CCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          317 CNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      ++++++++       .|+.+++|++.+++..
T Consensus       266 ~~~~la~~-------~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          266 KLQWVAVG-------TDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             SSCEEEEE-------ESSCEEEEESSSCCSC
T ss_pred             CCCEEEEE-------CCCCEEEEEeCCCCCC
Confidence            99998877       4777888888776543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-31  Score=238.62  Aligned_cols=208  Identities=15%  Similarity=0.149  Sum_probs=163.6

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE-EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ..+.+|.+.|++++|+|+  +|++|+.|++|++|++..+.. .........|...|.+++|+|++++|++++.|+.|++|
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw   85 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW   85 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            356789999999999987  899999999999999987532 22211123488899999999999999999999999999


Q ss_pred             ECCCCceee-ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeecCCCC
Q 017421          197 DVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----NKLSLRILAHTSD  271 (372)
Q Consensus       197 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~  271 (372)
                      |+....... .......          ..+|...|.+++|+|++++|++++.|++|++||++.    .+++..+.+|...
T Consensus        86 ~~~~~~~~~~~~~~~~~----------~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           86 AKEESADRTFEMDLLAI----------IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             EC-------CCCEEEEE----------EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             EcccCcCccccceeEEE----------EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence            986432100 0000000          015788999999999999999999999999999943    2567788899999


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCCCCeeEEEeccC--CCeEEEEeeeeEEEeeceEEEeec
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSINPCNKYLFNPC--NKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~~~~~s~~--g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      |.+++|+ |++.+|++++.|++|++||.+        .+.+|...|.+++|+|+  +..|++++      .|++|++|++
T Consensus       156 v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~D~~v~iw~~  228 (330)
T 2hes_X          156 VKHVIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS------DDSTVRVWKY  228 (330)
T ss_dssp             EEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE------TTSCEEEEEE
T ss_pred             eEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe------CCCeEEEEEe
Confidence            9999999 899999999999999999975        24579999999999999  66788775      6889999988


Q ss_pred             ccc
Q 017421          342 FLL  344 (372)
Q Consensus       342 ~~~  344 (372)
                      ..+
T Consensus       229 ~~~  231 (330)
T 2hes_X          229 MGD  231 (330)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-31  Score=235.60  Aligned_cols=204  Identities=17%  Similarity=0.116  Sum_probs=169.4

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC--CCEEEEEeCCCeEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIV  196 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw  196 (372)
                      .+.+|...|++++|+|+|++||+|+.|++|+||++..... .....+.+|..+|.+++|+|+  +++|++++.|+.|++|
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            4678999999999999999999999999999999975311 111235689999999999874  8999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCe
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDV  272 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v  272 (372)
                      |++++........              .+|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+.+|...|
T Consensus        83 d~~~~~~~~~~~~--------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           83 KEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (297)
T ss_dssp             EBSSSCBCCCEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred             EcCCCceEEEEEe--------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence            9987753222111              146779999999997  8999999999999999998763  245677899999


Q ss_pred             EEEEEeCCC-------------CCEEEEEeCCCeEEEEeccc----------ccCCCCCeeEEEeccCC---CeEEEEee
Q 017421          273 NTVCFGDES-------------GHLIYSGSDDNLCKVNSVLL----------LTRSINPCNKYLFNPCN---KYLIIYLI  326 (372)
Q Consensus       273 ~~~~~sp~~-------------~~~l~s~~~dg~i~vwd~~~----------~~~~~~~v~~~~~s~~g---~~l~~~~~  326 (372)
                      .+++|+ |+             +++|++|+.|+.|++||++.          +.+|...|.+++|+|++   .+|++++ 
T Consensus       149 ~~~~~~-p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s-  226 (297)
T 2pm7_B          149 NSASWA-PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS-  226 (297)
T ss_dssp             EEEEEC-CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE-
T ss_pred             ceEeec-CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE-
Confidence            999999 54             57999999999999999863          34789999999999995   7888876 


Q ss_pred             eeEEEeeceEEEeecccc
Q 017421          327 LVISIYSPNILLDNYFLL  344 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~~~  344 (372)
                           .|++|++||+.+.
T Consensus       227 -----~D~~v~iWd~~~~  239 (297)
T 2pm7_B          227 -----QDRTCIIWTQDNE  239 (297)
T ss_dssp             -----TTSCEEEEEESST
T ss_pred             -----CCCcEEEEEeCCC
Confidence                 7999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-31  Score=244.54  Aligned_cols=233  Identities=19%  Similarity=0.209  Sum_probs=190.2

Q ss_pred             ccCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccC
Q 017421           92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL  168 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  168 (372)
                      .|++++.+   .+.+..+++|+.........+.+|...|.+++|+|++++|++++.|++|++||+.++......    .+
T Consensus       130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~~  205 (393)
T 1erj_A          130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----SI  205 (393)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----EC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE----Ec
Confidence            34555543   456778889988776666778899999999999999999999999999999999998665442    23


Q ss_pred             CcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          169 RWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       169 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                      ...+.+++|+| ++++|++++.|+.|++||++++..........         ....+|...|.+++|+|++++|++|+.
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~---------~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN---------ESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc---------cCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            44699999999 89999999999999999999887543322110         011257889999999999999999999


Q ss_pred             CCeEEEEECCCC------------eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCe
Q 017421          248 DDCIYVYDLEAN------------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPC  309 (372)
Q Consensus       248 dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v  309 (372)
                      |+.|++||+++.            .+...+.+|...|.+++|+ +++.+|++|+.|+.|++||+++      +.+|...|
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v  355 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV  355 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEEC-GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCE
Confidence            999999999753            3456777899999999999 9999999999999999999873      45899999


Q ss_pred             eEEEecc------CCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          310 NKYLFNP------CNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       310 ~~~~~s~------~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      .+++|++      ++++|++++      .|++|++|++...
T Consensus       356 ~~v~~~~~~~~~p~~~~l~sgs------~Dg~i~iW~~~~~  390 (393)
T 1erj_A          356 ISVAVANGSSLGPEYNVFATGS------GDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEECSSCTTCTTCEEEEEEE------TTSEEEEEEEEEC
T ss_pred             EEEEecCCcCcCCCCCEEEEEC------CCCcEEECccccc
Confidence            9999886      678888886      6999999998654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-31  Score=237.18  Aligned_cols=225  Identities=14%  Similarity=0.027  Sum_probs=173.8

Q ss_pred             ccCCceeEeeeeeCCCC--Cccc-cC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEeeecccCCcc
Q 017421          100 SAADCCHMLSRYLPVNG--PWPV-DQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWT  171 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~  171 (372)
                      .+.|..+++|+......  ...+ .+ |...|.+++|+|++++|++|+.|++|+||++.....    ........+|...
T Consensus        30 ~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~  109 (330)
T 2hes_X           30 GSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE  109 (330)
T ss_dssp             EESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C
T ss_pred             EcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc
Confidence            45677888888765322  2223 34 999999999999999999999999999999854211    1122235688889


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCc-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                      |.+++|+|++++|++++.|+.|++||+.... ........             .+|...|.+++|+|++++|++++.|++
T Consensus       110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~-------------~~h~~~v~~v~~~p~~~~l~s~s~D~~  176 (330)
T 2hes_X          110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL-------------QEHSQDVKHVIWHPSEALLASSSYDDT  176 (330)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE-------------CCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe-------------ccCCCceEEEEECCCCCEEEEEcCCCe
Confidence            9999999999999999999999999995432 11111111             157779999999999999999999999


Q ss_pred             EEEEECCCC--eEEEEeecCCCCeEEEEEeCCC--CCEEEEEeCCCeEEEEecccc--------------c-CCCCCeeE
Q 017421          251 IYVYDLEAN--KLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVNSVLLL--------------T-RSINPCNK  311 (372)
Q Consensus       251 i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~--~~~l~s~~~dg~i~vwd~~~~--------------~-~~~~~v~~  311 (372)
                      |++||+.++  +++..+.+|...|.+++|+ |+  +.+|++++.|++|++||++..              . .|...|.+
T Consensus       177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  255 (330)
T 2hes_X          177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN  255 (330)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEEC-CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEE
T ss_pred             EEEEECCCCCeeEEEEccCCCCcEEEEEec-CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEE
Confidence            999999876  6788889999999999999 66  678999999999999998632              1 38889999


Q ss_pred             EEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          312 YLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      ++|++++ +|++++      .|+.|++|+..+++
T Consensus       256 v~~s~~~-~l~s~~------~dg~v~iw~~~~~~  282 (330)
T 2hes_X          256 VAWGFNG-LIASVG------ADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEECTTS-CEEEEE------TTSCEEEEEEETTE
T ss_pred             EEEcCCC-EEEEEe------CCCEEEEEEcCCCc
Confidence            9999876 555554      68899999987763

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.6e-31  Score=237.78  Aligned_cols=201  Identities=15%  Similarity=0.157  Sum_probs=170.3

Q ss_pred             ccccCCCCceEEEEE-----CC-CCCEEEEEeCCCcEEEEeCCCCeE----EEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421          118 WPVDQTTSRAYVSQF-----SA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLVYA  187 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~-----s~-~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  187 (372)
                      ..+.+|...|++++|     ++ ++++|++|+.|++|+|||+.....    ........+|...|.+++|+|++.+++++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            457899999999999     77 999999999999999999975421    11223356888899999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-
Q 017421          188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-  266 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-  266 (372)
                      +.|+.|++||+++++......                +|...|.+++|+|++++|++++.|+.|++||+... ...... 
T Consensus        95 s~D~~v~lwd~~~~~~~~~~~----------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~  157 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRFV----------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAE  157 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEEE----------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCT
T ss_pred             cCCCcEEEEECCCCcEEEEEc----------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeec
Confidence            999999999999887644332                57789999999999999999999999999999844 333333 


Q ss_pred             --cCCCCeEEEEEeCCCC----------CEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421          267 --AHTSDVNTVCFGDESG----------HLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVI  329 (372)
Q Consensus       267 --~~~~~v~~~~~sp~~~----------~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~  329 (372)
                        .|...|.+++|+ |++          .+|++++.|+.|++||..     .+..|...|.+++|+|+|++|++++    
T Consensus       158 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs----  232 (343)
T 2xzm_R          158 KENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG----  232 (343)
T ss_dssp             TTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE----
T ss_pred             ccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEc----
Confidence              688899999999 665          799999999999999965     3457899999999999999999886    


Q ss_pred             EEeeceEEEeecc
Q 017421          330 SIYSPNILLDNYF  342 (372)
Q Consensus       330 ~~~d~~i~lw~~~  342 (372)
                        .|+.|++||+.
T Consensus       233 --~dg~v~iwd~~  243 (343)
T 2xzm_R          233 --KDKKLLIWDIL  243 (343)
T ss_dssp             --TTCEEEEEESS
T ss_pred             --CCCeEEEEECC
Confidence              68889999983

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.4e-32  Score=252.96  Aligned_cols=214  Identities=15%  Similarity=0.160  Sum_probs=177.5

Q ss_pred             cccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421          119 PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw  196 (372)
                      ...+|...|++++|+| ++++||+|+.||.|+|||+.++.... .....+|...|++++|+| ++++|++++.||.|++|
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            3456889999999999 56789999999999999998764322 233568889999999998 78999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      |++++........              ..+...+.+++|+|++++|++|+.||.|++||++. +.+..+.+|...|++++
T Consensus       193 d~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~  257 (435)
T 4e54_B          193 DFKGNILRVFASS--------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVA  257 (435)
T ss_dssp             ETTSCEEEEEECC--------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEE
T ss_pred             eccCCceeEEecc--------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeee
Confidence            9987654322211              02334688999999999999999999999999974 56677889999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEecccc---------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLL---------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      |+|....+|++++.|+.|++||++..         ..|...|++++|+|+|++|++++      .|+.|++||+.+++..
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~------~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD------QKSEIRVYSASQWDCP  331 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE------SSSCEEEEESSSSSSE
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc------CCCEEEEEECCCCccc
Confidence            99334458899999999999999742         36788999999999999999886      7999999999999888


Q ss_pred             EEEeeeE
Q 017421          348 YSFMVHI  354 (372)
Q Consensus       348 ~~~~~h~  354 (372)
                      ..+..|.
T Consensus       332 ~~~~~~~  338 (435)
T 4e54_B          332 LGLIPHP  338 (435)
T ss_dssp             EEECCCC
T ss_pred             eEEeccc
Confidence            8877664

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.2e-31  Score=258.72  Aligned_cols=231  Identities=13%  Similarity=0.066  Sum_probs=192.1

Q ss_pred             ccCCCCcc---ccCCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEe
Q 017421           92 NYSGRGRF---SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERGWKIQKD  162 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~  162 (372)
                      .|++++.+   .+.|..+++|+......  ...+.+|.+.|.+++|+|++++|++++.+    +.|++||.  +....  
T Consensus        66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~--  141 (611)
T 1nr0_A           66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG--  141 (611)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB--
T ss_pred             EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc--
Confidence            45677754   45577899998754433  23567899999999999999999998765    46888874  32322  


Q ss_pred             eecccCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE
Q 017421          163 ILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  241 (372)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  241 (372)
                       ...+|...|.+++|+|++. .|++++.|+.|++||..+++......                +|...|.+++|+|+|++
T Consensus       142 -~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~----------------~H~~~V~~v~fspdg~~  204 (611)
T 1nr0_A          142 -NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG----------------EHTKFVHSVRYNPDGSL  204 (611)
T ss_dssp             -CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC----------------CCSSCEEEEEECTTSSE
T ss_pred             -eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec----------------cccCceEEEEECCCCCE
Confidence             3568888999999999987 59999999999999988766533322                57889999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEEee-------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------------
Q 017421          242 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------------  302 (372)
Q Consensus       242 l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------------  302 (372)
                      |++++.|++|++||+.+++++..+.       +|...|.+++|+ |++++|++++.|++|++||+++.            
T Consensus       205 las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            9999999999999999999888874       799999999999 99999999999999999998631            


Q ss_pred             -------------------------------------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          303 -------------------------------------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       303 -------------------------------------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                                                           .+|...|++++|+|+|++|++++      .|++|++||+.+++
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s------~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD------AEGHINSWDISTGI  357 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCC
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe------CCCcEEEEECCCCc
Confidence                                                 25778899999999999999887      79999999999887


Q ss_pred             EEEEE
Q 017421          346 TFYSF  350 (372)
Q Consensus       346 ~~~~~  350 (372)
                      ....+
T Consensus       358 ~~~~~  362 (611)
T 1nr0_A          358 SNRVF  362 (611)
T ss_dssp             EEECS
T ss_pred             eeeec
Confidence            65543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.2e-31  Score=258.13  Aligned_cols=230  Identities=18%  Similarity=0.197  Sum_probs=195.9

Q ss_pred             ccCCceeEeeeeeCCCC-----CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421          100 SAADCCHMLSRYLPVNG-----PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  174 (372)
                      .+.|..+++|+......     ...+.+|...|.+++|+|++++|++|+.|++|+|||+.++.....   ..+|...|.+
T Consensus       401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~---~~~h~~~v~~  477 (694)
T 3dm0_A          401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR---FVGHTKDVLS  477 (694)
T ss_dssp             EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEE
T ss_pred             EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE---EeCCCCCEEE
Confidence            56677899998765433     235789999999999999999999999999999999999876654   5678889999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC--CEEEEEeCCCeEE
Q 017421          175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIY  252 (372)
Q Consensus       175 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~s~s~dg~i~  252 (372)
                      ++|+|++++|++++.|+.|++||+..........             ...+|...|.+++|+|++  ..|++++.|++|+
T Consensus       478 ~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~  544 (694)
T 3dm0_A          478 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE-------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK  544 (694)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred             EEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc-------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEE
Confidence            9999999999999999999999986543222111             012577899999999987  6899999999999


Q ss_pred             EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeee
Q 017421          253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      +||+++++....+.+|...|++++|+ |++++|++|+.||.|++||+++.+     .+...|.+++|+|++.+++++   
T Consensus       545 vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---  620 (694)
T 3dm0_A          545 VWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA---  620 (694)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE---
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE---
Confidence            99999999999999999999999999 999999999999999999997432     345679999999999999888   


Q ss_pred             eEEEeeceEEEeecccceEEEEEeee
Q 017421          328 VISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                          .++.|++||+.+++.+..+..|
T Consensus       621 ----~~~~i~iwd~~~~~~~~~~~~~  642 (694)
T 3dm0_A          621 ----TEHGIKIWDLESKSIVEDLKVD  642 (694)
T ss_dssp             ----ETTEEEEEETTTTEEEEEECCC
T ss_pred             ----cCCCEEEEECCCCCChhhhccc
Confidence                4777999999999888877544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.9e-30  Score=231.80  Aligned_cols=242  Identities=11%  Similarity=0.071  Sum_probs=194.9

Q ss_pred             ccCCceeEeeeeeCCCC----CccccCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeE------EEEeeeccc
Q 017421          100 SAADCCHMLSRYLPVNG----PWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK------IQKDILAKS  167 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~  167 (372)
                      .+.+..+++|+......    ...+.+|...|.+++|+|  ++++|++++.||.|++||+..+..      .........
T Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  108 (351)
T 3f3f_A           29 CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND  108 (351)
T ss_dssp             EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC
T ss_pred             eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc
Confidence            45567788999876543    334578999999999999  699999999999999999987621      112223557


Q ss_pred             CCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CCEE
Q 017421          168 LRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GREL  242 (372)
Q Consensus       168 ~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l  242 (372)
                      |...|.+++|+|+  +++|++++.||.|++||+++++...............+.   ..+|...+.+++|+|+   +.++
T Consensus       109 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~l  185 (351)
T 3f3f_A          109 SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP---PANHLQSDFCLSWCPSRFSPEKL  185 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC---CSSCSCCCEEEEECCCSSSCCEE
T ss_pred             cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc---cCCcccceeEEEeccCCCCCcEE
Confidence            8889999999999  999999999999999999988765443332222211111   1256779999999997   8999


Q ss_pred             EEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEEeCCCC----CEEEEEeCCCeEEEEeccc---------------
Q 017421          243 VAGSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVNSVLL---------------  301 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~----~~l~s~~~dg~i~vwd~~~---------------  301 (372)
                      ++++.++.+.+|+...++.  +..+.+|...|++++|+ |++    ++|++++.||.|++||++.               
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  264 (351)
T 3f3f_A          186 AVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN  264 (351)
T ss_dssp             EEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred             EEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee
Confidence            9999999998888887764  67777899999999999 777    8999999999999999864               


Q ss_pred             -------------------------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          302 -------------------------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       302 -------------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                                                           +..|...|++++|+|++++|++++      .|+.|++|++.++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~dg~v~iw~~~~~  338 (351)
T 3f3f_A          265 MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG------DDGKVRLWKATYS  338 (351)
T ss_dssp             --------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE------TTSCEEEEEECTT
T ss_pred             ccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec------CCCcEEEEecCcC
Confidence                                                 235888999999999999999886      7999999999998


Q ss_pred             eEEEEEe
Q 017421          345 RTFYSFM  351 (372)
Q Consensus       345 ~~~~~~~  351 (372)
                      +.+..+.
T Consensus       339 ~~~~~~~  345 (351)
T 3f3f_A          339 NEFKCMS  345 (351)
T ss_dssp             SCEEEEE
T ss_pred             cchhhee
Confidence            7665443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-31  Score=240.83  Aligned_cols=213  Identities=17%  Similarity=0.116  Sum_probs=168.6

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEe-eecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  193 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  193 (372)
                      ..|...|++++|+|||++|++|+.      |+.|++|+..++...... ....+|...|.+++|+|+++ +++++.||.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            469999999999999999999997      778999998776433221 12346777899999999976 5567889999


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN  273 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  273 (372)
                      ++||+.+++.........            .+|...|++++|+|++++|++++.|+.|++||+++++++..+.+|...|+
T Consensus       118 ~lWd~~~~~~~~~~~~~~------------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAK------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             EEC--------CCCCEEE------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEeeccccceeEEEeecc------------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence            999999887543333221            15778999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCC-CEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCC-CeEEEEeeeeEEEeeceEEEeeccc
Q 017421          274 TVCFGDESG-HLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCN-KYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       274 ~~~~sp~~~-~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      +++|+ +++ .++++++.|+.|++||+++.+        .+...+.+++|+|++ .+|+++.      .|+.|++||+.+
T Consensus       186 ~v~~s-~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~------~d~~i~~wd~~~  258 (357)
T 4g56_B          186 CVAAC-PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD------ETGNVSLVNIKN  258 (357)
T ss_dssp             EEEEC-TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE------SSSCEEEEESSC
T ss_pred             EEEEc-cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee------cccceeEEECCC
Confidence            99999 555 589999999999999997432        456779999999985 5666664      689999999999


Q ss_pred             ceEEEEEeee
Q 017421          344 LRTFYSFMVH  353 (372)
Q Consensus       344 ~~~~~~~~~h  353 (372)
                      ++.+..+.+|
T Consensus       259 ~~~~~~~~~~  268 (357)
T 4g56_B          259 PDSAQTSAVH  268 (357)
T ss_dssp             GGGCEEECCC
T ss_pred             CcEeEEEecc
Confidence            9998888777

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-31  Score=237.40  Aligned_cols=223  Identities=13%  Similarity=0.075  Sum_probs=181.6

Q ss_pred             ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.|..+++|+.....  ....+.+|...|++++|+|  ++++|++|+.|++|+|||+.++... ......+|...|.++
T Consensus        31 gs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v  109 (316)
T 3bg1_A           31 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSV  109 (316)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEE
T ss_pred             EeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEE
Confidence            5667789999987653  2356789999999999986  4899999999999999999876321 112356788899999


Q ss_pred             EECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---------------
Q 017421          176 SLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---------------  238 (372)
Q Consensus       176 ~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---------------  238 (372)
                      +|+|+  +.+|++++.|+.|++||++.+.........             .+|...|.+++|+|+               
T Consensus       110 ~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  176 (316)
T 3bg1_A          110 CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-------------NAHTIGCNAVSWAPAVVPGSLIDHPSGQKP  176 (316)
T ss_dssp             EECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-------------TSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred             EECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-------------ccccCCcceEEEccccCCccccccccccCc
Confidence            99997  789999999999999999876321111111             146778999999997               


Q ss_pred             --CCEEEEEeCCCeEEEEECCCC---eEEEEeecCCCCeEEEEEeCCCC----CEEEEEeCCCeEEEEeccc--------
Q 017421          239 --GRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVNSVLL--------  301 (372)
Q Consensus       239 --~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~----~~l~s~~~dg~i~vwd~~~--------  301 (372)
                        +++|++|+.|+.|++||++..   +++..+.+|...|.+++|+ |++    .+|++++.|++|++||++.        
T Consensus       177 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s-p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~  255 (316)
T 3bg1_A          177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA-PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP  255 (316)
T ss_dssp             CCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC-CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBC
T ss_pred             cccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec-CCCCCCCceEEEEcCCCeEEEEEccCccccchhh
Confidence              468999999999999999755   4667788999999999999 665    8999999999999999864        


Q ss_pred             --ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          302 --LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       302 --~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                        +..|...|.+++|+|+|++|++++      .|++|++|+...
T Consensus       256 ~~~~~~~~~v~~v~~sp~g~~las~~------~D~~v~lw~~~~  293 (316)
T 3bg1_A          256 KLLHKFNDVVWHVSWSITANILAVSG------GDNKVTLWKESV  293 (316)
T ss_dssp             CEEEECSSCEEEEEECTTTCCEEEEE------SSSCEEEEEECT
T ss_pred             hhhhcCCCcEEEEEEcCCCCEEEEEc------CCCeEEEEEECC
Confidence              235778999999999999999886      689999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=3.5e-30  Score=234.52  Aligned_cols=218  Identities=14%  Similarity=0.111  Sum_probs=172.7

Q ss_pred             cCCceeEeeeeeCCCCC---------ccccCCCCceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEEEeeecccCC
Q 017421          101 AADCCHMLSRYLPVNGP---------WPVDQTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLR  169 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~  169 (372)
                      ..+..+++|........         .....+...+.+++|||||++++++  +.|++|+|||+.++..+...    .|.
T Consensus       101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~----~~~  176 (365)
T 4h5i_A          101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI----ETR  176 (365)
T ss_dssp             SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE----ECS
T ss_pred             cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe----CCC
Confidence            34556777776554332         1223445678999999999998755  46899999999998766542    355


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC
Q 017421          170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  249 (372)
Q Consensus       170 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg  249 (372)
                      ..|.+++|+||++++++++.+ .+.+|+..++........              .+|...|.+++|+|+++++++++.|+
T Consensus       177 ~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          177 GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD--------------FDKNWSLSKINFIADDTVLIAASLKK  241 (365)
T ss_dssp             SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC--------------CCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred             CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec--------------CCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            679999999999999998855 566777777664322211              14667899999999999999998887


Q ss_pred             ----eEEEEECCCCeE----EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEe
Q 017421          250 ----CIYVYDLEANKL----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLF  314 (372)
Q Consensus       250 ----~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~  314 (372)
                          .+++|++.....    ...+.+|...|++++|+ |+|++||+|+.|++|+|||+++       +.+|..+|++++|
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S-pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD-MKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEEC-CCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence                688999877653    34567899999999999 9999999999999999999873       3479999999999


Q ss_pred             ccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          315 NPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       315 s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +|||++|++++      .|++|+||++...
T Consensus       321 Spdg~~laS~S------~D~tvrvw~ip~~  344 (365)
T 4h5i_A          321 SPDSTYVASVS------AANTIHIIKLPLN  344 (365)
T ss_dssp             CTTSCEEEEEE------TTSEEEEEECCTT
T ss_pred             CCCCCEEEEEe------CCCeEEEEEcCCC
Confidence            99999999987      7999999998644

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=1.6e-30  Score=250.67  Aligned_cols=211  Identities=20%  Similarity=0.234  Sum_probs=179.7

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      ...+..+.+|+. .......+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..   ..+|...|++++|+|
T Consensus       362 ~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~---~~~~~~~v~~~~~s~  436 (577)
T 2ymu_A          362 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT---LTGHSSSVWGVAFSP  436 (577)
T ss_dssp             EETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEE---EECCSSCEEEEEECT
T ss_pred             EeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEE---ecCCCCCeEEEEECC
Confidence            344556777763 344456678899999999999999999999999999999965 434443   457888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      ++++|++++.|+.|++||... +......                +|...|.+++|+|++++|++++.|+.|++||. ++
T Consensus       437 d~~~l~~~~~d~~v~~w~~~~-~~~~~~~----------------~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~  498 (577)
T 2ymu_A          437 DDQTIASASDDKTVKLWNRNG-QLLQTLT----------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  498 (577)
T ss_dssp             TSSEEEEEETTSEEEEEETTS-CEEEEEE----------------CCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred             CCCEEEEEcCCCEEEEEECCC-CEEEEEc----------------CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence            999999999999999999754 3222211                46779999999999999999999999999995 57


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeec
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSP  334 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~  334 (372)
                      +++..+.+|...|++++|+ |++++|++++.|+.|++||..     ++.+|...|++++|+|||++|++++      .|+
T Consensus       499 ~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~------~D~  571 (577)
T 2ymu_A          499 QLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS------SDK  571 (577)
T ss_dssp             CEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE------TTS
T ss_pred             CEEEEEeCCCCCEEEEEEc-CCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe------CCC
Confidence            8889999999999999999 999999999999999999964     4568999999999999999999886      688


Q ss_pred             eEEEee
Q 017421          335 NILLDN  340 (372)
Q Consensus       335 ~i~lw~  340 (372)
                      +|++||
T Consensus       572 ~i~~Wd  577 (577)
T 2ymu_A          572 TVKLWN  577 (577)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.98  E-value=3.1e-29  Score=224.58  Aligned_cols=226  Identities=16%  Similarity=0.156  Sum_probs=191.3

Q ss_pred             ccCCceeEeeeeeCCCCCcccc-----CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPVD-----QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  174 (372)
                      .+.+..+.+|+.........+.     +|...|.+++|+|++++|++++.|+.|++||+.++.... ......|...|.+
T Consensus        68 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~i~~  146 (337)
T 1gxr_A           68 TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI-KAELTSSAPACYA  146 (337)
T ss_dssp             EECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE-EEEEECSSSCEEE
T ss_pred             EcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce-eeecccCCCceEE
Confidence            3447788888887655433332     799999999999999999999999999999999875322 2234567778999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 017421          175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  254 (372)
Q Consensus       175 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iw  254 (372)
                      ++|+|+++++++++.||.|++||+++++......                +|...|.+++|+|++++|++++.|+.|++|
T Consensus       147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~  210 (337)
T 1gxr_A          147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------------GHTDGASCIDISNDGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee----------------cccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence            9999999999999999999999999887544332                466789999999999999999999999999


Q ss_pred             ECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421          255 DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVI  329 (372)
Q Consensus       255 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~  329 (372)
                      |+++++.+..+. +...+.+++|+ |++++|++++.|+.|++||++.     ...|...|.+++|+|++++|++++    
T Consensus       211 d~~~~~~~~~~~-~~~~v~~~~~s-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----  284 (337)
T 1gxr_A          211 DLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG----  284 (337)
T ss_dssp             ETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE----
T ss_pred             ECCCCceEeeec-CCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec----
Confidence            999998887765 77899999999 9999999999999999999974     347889999999999999999886    


Q ss_pred             EEeeceEEEeecccceEEEEE
Q 017421          330 SIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       330 ~~~d~~i~lw~~~~~~~~~~~  350 (372)
                        .|+.+++|++.+++.+...
T Consensus       285 --~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          285 --KDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             --TTSEEEEEETTTCCEEEEE
T ss_pred             --CCCcEEEEECCCCeEEEEe
Confidence              6899999999999877543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.5e-30  Score=233.27  Aligned_cols=224  Identities=13%  Similarity=0.127  Sum_probs=186.4

Q ss_pred             ccCCceeEeeeeeC--CCCCccccCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLP--VNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.+..+.+|+...  ......+.+|...|++++|+|+  +++|++++.||.|++||+.++... .......|...|.++
T Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~  107 (379)
T 3jrp_A           29 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSV  107 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEE
T ss_pred             EECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEE
Confidence            44567788999873  3344567899999999999987  999999999999999999988522 222355678899999


Q ss_pred             EECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-------------CCC
Q 017421          176 SLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGR  240 (372)
Q Consensus       176 ~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-------------~~~  240 (372)
                      +|+|+  +++|++++.|+.|++||+..+.........              +|...|.+++|+|             ++.
T Consensus       108 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T 3jrp_A          108 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--------------AHAIGVNSASWAPATIEEDGEHNGTKESR  173 (379)
T ss_dssp             EECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE--------------CCTTCEEEEEECCCC----------CTTC
T ss_pred             EeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec--------------CCCCceEEEEEcCccccccccccCCCCCC
Confidence            99999  999999999999999999887543222211              4667999999999             699


Q ss_pred             EEEEEeCCCeEEEEECCCCe----EEEEeecCCCCeEEEEEeCCC---CCEEEEEeCCCeEEEEecccc-----------
Q 017421          241 ELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVNSVLLL-----------  302 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~---~~~l~s~~~dg~i~vwd~~~~-----------  302 (372)
                      +|++++.|+.|++||++++.    ....+.+|...|.+++|+ |+   +++|++++.||.|++||++..           
T Consensus       174 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  252 (379)
T 3jrp_A          174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE  252 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred             EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC-CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence            99999999999999998654    456777899999999999 87   899999999999999998742           


Q ss_pred             cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          303 TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       303 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      ..+...|++++|+|+|++|++++      .|+.|++|++..+.
T Consensus       253 ~~~~~~v~~~~~s~~g~~l~~~~------~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          253 EKFPDVLWRASWSLSGNVLALSG------GDNKVTLWKENLEG  289 (379)
T ss_dssp             SCCSSCEEEEEECSSSCCEEEEE------SSSSEEEEEEEETT
T ss_pred             ccCCCcEEEEEEcCCCCEEEEec------CCCcEEEEeCCCCC
Confidence            13778899999999999999886      58999999988654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=4.4e-30  Score=236.85  Aligned_cols=233  Identities=12%  Similarity=0.122  Sum_probs=190.2

Q ss_pred             cCCceeEeeeeeCC----CCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEE----EEeeecccCCcc
Q 017421          101 AADCCHMLSRYLPV----NGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWT  171 (372)
Q Consensus       101 ~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~  171 (372)
                      +.+..+.+|+....    .....+.+|.+.|.+++|+| ++++|++|+.||.|+||++.++...    .......+|...
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~  133 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR  133 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence            45667778876443    23445788999999999999 9999999999999999999886321    112235578889


Q ss_pred             eEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          172 VTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       172 v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                      |.+++|+|++ ++|++++.||.|++||+++++.......              .+|...|.+++|+|++++|++++.|+.
T Consensus       134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~  199 (402)
T 2aq5_A          134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP--------------DVHPDTIYSVDWSRDGALICTSCRDKR  199 (402)
T ss_dssp             EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT--------------TTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred             EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec--------------CCCCCceEEEEECCCCCEEEEEecCCc
Confidence            9999999998 6999999999999999998876433310              046679999999999999999999999


Q ss_pred             EEEEECCCCeEEEEe-ecCCCC-eEEEEEeCCCCCEEEEE---eCCCeEEEEeccccc--------CCCCCeeEEEeccC
Q 017421          251 IYVYDLEANKLSLRI-LAHTSD-VNTVCFGDESGHLIYSG---SDDNLCKVNSVLLLT--------RSINPCNKYLFNPC  317 (372)
Q Consensus       251 i~iwd~~~~~~~~~~-~~~~~~-v~~~~~sp~~~~~l~s~---~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~  317 (372)
                      |++||+++++.+..+ ..|.+. +.++.|+ +++++|++|   +.|+.|++||++...        .+...+..++|+|+
T Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  278 (402)
T 2aq5_A          200 VRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD  278 (402)
T ss_dssp             EEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred             EEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence            999999999998888 678776 8999999 899999999   789999999997532        46678999999999


Q ss_pred             CCeEEEEeeeeEEEeeceEEEeecccceE-EEEEeee
Q 017421          318 NKYLIIYLILVISIYSPNILLDNYFLLRT-FYSFMVH  353 (372)
Q Consensus       318 g~~l~~~~~~~~~~~d~~i~lw~~~~~~~-~~~~~~h  353 (372)
                      +++|+++..     .|+.|++|++.+++. +..+..|
T Consensus       279 ~~~l~~~g~-----~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          279 TNIVYLCGK-----GDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             TTEEEEEET-----TCSCEEEEEECSSTTCEEEEEEE
T ss_pred             CCEEEEEEc-----CCCeEEEEEecCCCcceEeeccc
Confidence            999975421     489999999998874 4444444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=5.5e-32  Score=247.08  Aligned_cols=212  Identities=13%  Similarity=0.113  Sum_probs=169.7

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  199 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  199 (372)
                      +..+.++|++++|+|++++|++|+.|+.|+||++.++.. .......+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            445678999999999999999999999999999988731 1222356788899999999999999999999999999999


Q ss_pred             CCc-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEeec-CCCCeEE
Q 017421          200 SGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILA-HTSDVNT  274 (372)
Q Consensus       200 ~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~  274 (372)
                      ++. .......              .+|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+
T Consensus        86 ~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~  151 (377)
T 3dwl_C           86 PDGTWKQTLVL--------------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS  151 (377)
T ss_dssp             ---CCCCEEEC--------------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred             CCCceeeeeEe--------------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence            876 1111111              1467799999999999999999999999999999887   3677777 9999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeccccc-----------------------CCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVLLLT-----------------------RSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      ++|+ |++++|++++.|+.|++||++...                       .|...|.+++|+|+|++|++++      
T Consensus       152 ~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------  224 (377)
T 3dwl_C          152 LDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG------  224 (377)
T ss_dssp             EEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE------
T ss_pred             EEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe------
Confidence            9999 899999999999999999984110                       6788899999999999999886      


Q ss_pred             eeceEEEeecccceE----EEEEeee
Q 017421          332 YSPNILLDNYFLLRT----FYSFMVH  353 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~----~~~~~~h  353 (372)
                      .|+.|++||+.+++.    +..+.+|
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (377)
T 3dwl_C          225 HDSSVTIAYPSAPEQPPRALITVKLS  250 (377)
T ss_dssp             TTTEEC-CEECSTTSCEEECCCEECS
T ss_pred             CCCcEEEEECCCCCCcceeeEeecCC
Confidence            689999999999876    6666655

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=4.7e-30  Score=234.92  Aligned_cols=213  Identities=15%  Similarity=0.179  Sum_probs=182.2

Q ss_pred             cccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421          119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw  196 (372)
                      .+.+|...|++++|+|++ ++|++|+.||.|+|||+.++..... ....+|...|.+++|+| ++++|++++.|+.|++|
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence            457899999999999999 9999999999999999997755433 22346888999999999 78999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      |+.+........    +          .+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++
T Consensus       147 d~~~~~~~~~~~----~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          147 DFSGSVIQVFAK----T----------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             ETTSCEEEEEEC----C----------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred             ECCCCceEEEec----c----------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence            998643322111    0          134568999999999999999999999999999 5778888999999999999


Q ss_pred             EeCCCCC-EEEEEeCCCeEEEEeccccc---------CCCCCeeEEEecc-CCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          277 FGDESGH-LIYSGSDDNLCKVNSVLLLT---------RSINPCNKYLFNP-CNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       277 ~sp~~~~-~l~s~~~dg~i~vwd~~~~~---------~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |+ |+++ +|++++.|+.|++||++...         .|...|.+++|+| ++++|++++      .|+.|++||+.+++
T Consensus       212 ~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~------~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          212 FN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD------QRNEIRVYSSYDWS  284 (383)
T ss_dssp             EC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE------SSSEEEEEETTBTT
T ss_pred             EC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc------CCCcEEEEECCCCc
Confidence            99 8887 99999999999999998521         5788999999999 999999886      68999999999998


Q ss_pred             EEEEEeeeE
Q 017421          346 TFYSFMVHI  354 (372)
Q Consensus       346 ~~~~~~~h~  354 (372)
                      .+..+.+|.
T Consensus       285 ~~~~~~~~~  293 (383)
T 3ei3_B          285 KPDQIIIHP  293 (383)
T ss_dssp             SCSEEEECC
T ss_pred             ccccccccc
Confidence            888887764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.2e-29  Score=244.49  Aligned_cols=241  Identities=19%  Similarity=0.236  Sum_probs=194.8

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+. .......+.+|...|.+++|+|++++|++++.|+.|++|++.... +..   ...|...+.+++|+|
T Consensus       280 ~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~---~~~~~~~v~~~~~s~  354 (577)
T 2ymu_A          280 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQT---LTGHSSSVWGVAFSP  354 (577)
T ss_dssp             EETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEE---ECCCSSCEEEEEECT
T ss_pred             EeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEE---EeCCCCCEEEEEECC
Confidence            445566777763 334445678899999999999999999999999999999987653 332   457778899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCC------------------------CCccccEEEEEE
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------------GGYSFGIFSLKF  235 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~h~~~i~~~~~  235 (372)
                      ++++|++++.|+.|++||..................+.|+++..                        .+|...|.+++|
T Consensus       355 ~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          355 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             TSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEE
Confidence            99999999999999999965432221111111122233333211                        358889999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCee
Q 017421          236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCN  310 (372)
Q Consensus       236 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~  310 (372)
                      +|++++|++++.|+.|++||.. ++.+..+.+|...|++++|+ |++++|++++.|+.|++||..     .+..|...|+
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s-pd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~  512 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR  512 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEE
T ss_pred             CCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEE
Confidence            9999999999999999999974 67778889999999999999 999999999999999999965     4558999999


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      +++|+|+|++|++++      .|+.|++||+ +++.+..+.+|.
T Consensus       513 ~l~~s~dg~~l~s~~------~dg~v~lwd~-~~~~~~~~~~h~  549 (577)
T 2ymu_A          513 GVAFSPDGQTIASAS------DDKTVKLWNR-NGQLLQTLTGHS  549 (577)
T ss_dssp             EEEECTTSSCEEEEE------TTSEEEEECT-TSCEEEEEECCS
T ss_pred             EEEEcCCCCEEEEEE------CcCEEEEEeC-CCCEEEEEcCCC
Confidence            999999999999886      6899999995 688888898883

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=228.54  Aligned_cols=233  Identities=14%  Similarity=0.118  Sum_probs=190.7

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|...|.+++|+|++++|++++.||.|+|||+.++..+..   ...|...|.+++|+|++++|++++.||.|++|
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            345789999999999999999999999999999999998876655   56788899999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCC-----------------------------------------CCccc--cEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADD-----------------------------------------GGYSF--GIFSL  233 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~h~~--~i~~~  233 (372)
                      |+.+++.............+.+.+...                                         .+|..  .+.++
T Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          102 DVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             ECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            999887655543222222222222110                                         01222  89999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCC
Q 017421          234 KFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSIN  307 (372)
Q Consensus       234 ~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~  307 (372)
                      +|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+ |++++|++++.|+.|++||+++..     .+..
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  260 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC  260 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence            9999999999999999999999998 78888999999999999999 899999999999999999998533     4678


Q ss_pred             CeeEEEeccCCCeEEEEeeee-EEEee-------ceEEEeecccceEEEEEeee
Q 017421          308 PCNKYLFNPCNKYLIIYLILV-ISIYS-------PNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       308 ~v~~~~~s~~g~~l~~~~~~~-~~~~d-------~~i~lw~~~~~~~~~~~~~h  353 (372)
                      .+..++|+|++++++++.... ..++.       ..+++||..+++.+..+.+|
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  314 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH  314 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence            899999999999999885221 11111       17999999999999988887

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=3.4e-30  Score=238.54  Aligned_cols=226  Identities=15%  Similarity=0.183  Sum_probs=187.3

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+.........+..| ..+....|+|++++|++|+.||.|++||+.++.....   ...|...|.+++|+|
T Consensus        74 ~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~~~~~~  149 (420)
T 3vl1_A           74 ARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI---DQAHVSEITKLKFFP  149 (420)
T ss_dssp             EEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE---TTSSSSCEEEEEECT
T ss_pred             EEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee---cccccCccEEEEECC
Confidence            445667888887766666666666 5556668899999999999999999999998755443   568888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      ++++|++++.|+.|++||+.+++......                +|...|.+++|+|++++|++++.|+.|++||++++
T Consensus       150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          150 SGEALISSSQDMQLKIWSVKDGSNPRTLI----------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCCCEEEE----------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCcCceEEc----------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            99999999999999999999887543332                47779999999999999999999999999999999


Q ss_pred             eEEEEeec---CCCCeEEEEE---------------------eCCCCCEEEEEeCCCeEEEEecccc-------cCCCCC
Q 017421          260 KLSLRILA---HTSDVNTVCF---------------------GDESGHLIYSGSDDNLCKVNSVLLL-------TRSINP  308 (372)
Q Consensus       260 ~~~~~~~~---~~~~v~~~~~---------------------sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~  308 (372)
                      +.+..+..   |...|.+++|                     + |++++|++++.||.|++||+++.       ..|...
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            99888874   4445555554                     6 78999999999999999999743       257889


Q ss_pred             eeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccceE-EEEEee
Q 017421          309 CNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLLRT-FYSFMV  352 (372)
Q Consensus       309 v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~~~-~~~~~~  352 (372)
                      |.+++|+|+++ +|++++      .|+.|++||+.+++. +..+.+
T Consensus       293 v~~~~~~~~~~~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~  332 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGY------ENGMLAQWDLRSPECPVGEFLI  332 (420)
T ss_dssp             EEEEEECSSCTTEEEEEE------TTSEEEEEETTCTTSCSEEEEE
T ss_pred             ceeEEEeCCCCCEEEEEe------CCCeEEEEEcCCCcCchhhhhc
Confidence            99999999998 888775      689999999988754 666655

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=8.3e-31  Score=239.29  Aligned_cols=222  Identities=14%  Similarity=0.082  Sum_probs=173.5

Q ss_pred             ccCCceeEeeeeeCC--CCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+.+..+.+|+....  .....+.+|...|.+++|+|++++|++++.|+.|++||+.++...........|...|.+++|
T Consensus        29 ~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  108 (377)
T 3dwl_C           29 TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW  108 (377)
T ss_dssp             CCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEEC
T ss_pred             ecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEE
Confidence            345677889998876  566778899999999999999999999999999999999987522223335678889999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      +|++++|++++.|+.|++||++++...........            .|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       109 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          109 SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR------------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             CTTSSCCEEEESSSCEEECCC-----CCCCEEECS------------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             CCCCCEEEEEecCCeEEEEEECCcccceeeeEeec------------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            99999999999999999999988763111111110            266799999999999999999999999999985


Q ss_pred             ------------------CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----------ccCCCCCe
Q 017421          258 ------------------ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----------LTRSINPC  309 (372)
Q Consensus       258 ------------------~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~v  309 (372)
                                        .++++..+ .|...|.+++|+ |++++|++++.|+.|++||++.          +..|..+|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  254 (377)
T 3dwl_C          177 VRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL  254 (377)
T ss_dssp             CSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCE
T ss_pred             ecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCce
Confidence                              35566666 899999999999 9999999999999999999863          33678899


Q ss_pred             eEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          310 NKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       310 ~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      .+++|+|+|++|+++.       +..+.+|+..
T Consensus       255 ~~~~~s~~~~~l~~~~-------~~~~~~~~~~  280 (377)
T 3dwl_C          255 RSLLWANESAIVAAGY-------NYSPILLQGN  280 (377)
T ss_dssp             EEEEEEETTEEEEEES-------SSSEEEECCC
T ss_pred             EEEEEcCCCCEEEEEc-------CCcEEEEEeC
Confidence            9999999999999885       4444455544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=234.04  Aligned_cols=234  Identities=15%  Similarity=0.147  Sum_probs=187.9

Q ss_pred             ccCCceeEeeee----eCCC------CCccccC----------CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 017421          100 SAADCCHMLSRY----LPVN------GPWPVDQ----------TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI  159 (372)
Q Consensus       100 ~~~~~~~~~~~~----~~~~------~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  159 (372)
                      .+.+..+.+|+.    ....      ....+..          |...|.+++|+|++++|++++.||.|++|+ .++..+
T Consensus        64 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~  142 (425)
T 1r5m_A           64 GEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL  142 (425)
T ss_dssp             EETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEE
T ss_pred             ecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCee
Confidence            455677888988    5444      1222222          688999999999999999999999999999 444444


Q ss_pred             EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeec----------------ccccceeccC-
Q 017421          160 QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI----------------HDGLDFSAAD-  222 (372)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~-  222 (372)
                      ..   ...|...|.+++|+|++++|++++.|+.|++||+.+++..........                ...+.+.+.. 
T Consensus       143 ~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (425)
T 1r5m_A          143 NV---LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK  219 (425)
T ss_dssp             EE---ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE
T ss_pred             ee---ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE
Confidence            43   557888999999999999999999999999999998876544332211                1112222110 


Q ss_pred             -----------------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421          223 -----------------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       223 -----------------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  279 (372)
                                             ..+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+ 
T Consensus       220 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-  298 (425)
T 1r5m_A          220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV-  298 (425)
T ss_dssp             EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEE-
T ss_pred             EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEEC-
Confidence                                   12578899999999999999999999999999999999989999999999999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |++ ++++++.|+.|++||++.      +..|...|.+++|+|++++|++++      .|+.|++||+.+++
T Consensus       299 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          299 GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF------MDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE------TTSCEEEEECHHHH
T ss_pred             CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE------CCCeEEEEECCCCc
Confidence            788 999999999999999873      346788999999999999999886      68999999999988

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=5e-31  Score=235.40  Aligned_cols=203  Identities=18%  Similarity=0.100  Sum_probs=164.3

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw  196 (372)
                      .+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.... ...+.+|..+|.+++|+|  ++++|++++.|+.|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~-~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL-IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE-EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE-EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            457899999999999999999999999999999998774321 223568999999999986  48999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeE---EEEeecCCCC
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKL---SLRILAHTSD  271 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~  271 (372)
                      |++++........              .+|...|.+++|+|+  +.+|++|+.|+.|++||++.+..   ...+.+|...
T Consensus        87 d~~~~~~~~~~~~--------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~  152 (316)
T 3bg1_A           87 REENGTWEKSHEH--------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG  152 (316)
T ss_dssp             CCSSSCCCEEEEE--------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred             ECCCCcceEEEEc--------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence            9987643222111              157779999999998  78999999999999999987632   3445679999


Q ss_pred             eEEEEEeCCC-----------------CCEEEEEeCCCeEEEEeccc---------ccCCCCCeeEEEeccCC----CeE
Q 017421          272 VNTVCFGDES-----------------GHLIYSGSDDNLCKVNSVLL---------LTRSINPCNKYLFNPCN----KYL  321 (372)
Q Consensus       272 v~~~~~sp~~-----------------~~~l~s~~~dg~i~vwd~~~---------~~~~~~~v~~~~~s~~g----~~l  321 (372)
                      |.+++|+ |+                 +++|++|+.|+.|++||++.         +..|...|.+++|+|++    ++|
T Consensus       153 v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          153 CNAVSWA-PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             BCCCEEC-CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred             cceEEEc-cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence            9999999 55                 47899999999999999852         34788999999999997    778


Q ss_pred             EEEeeeeEEEeeceEEEeeccc
Q 017421          322 IIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      ++++      .|++|++|++.+
T Consensus       232 as~s------~D~~v~iw~~~~  247 (316)
T 3bg1_A          232 ASCS------QDGRVFIWTCDD  247 (316)
T ss_dssp             EEEE------TTCEEEEEECSS
T ss_pred             EEEc------CCCeEEEEEccC
Confidence            8876      789999998876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.3e-29  Score=230.49  Aligned_cols=223  Identities=12%  Similarity=0.061  Sum_probs=189.2

Q ss_pred             ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+.+..+.+|+.....  ....+.+|...|.+++|+|++++|++++.||.|++||+.++..... .....|...|.+++|
T Consensus        26 ~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~  104 (372)
T 1k8k_C           26 CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRW  104 (372)
T ss_dssp             ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEE
T ss_pred             EeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEE
Confidence            4456788899887765  6677889999999999999999999999999999999988754333 234567788999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC-
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-  256 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~-  256 (372)
                      +|++++|++++.|+.|++||++.+..........            .+|...|.+++|+|++++|++++.|+.|++||+ 
T Consensus       105 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          105 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIK------------KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC------------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee------------cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            9999999999999999999998876321111111            146679999999999999999999999999995 


Q ss_pred             -----------------CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEE
Q 017421          257 -----------------EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYL  313 (372)
Q Consensus       257 -----------------~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~  313 (372)
                                       ..++.+..+..|...|.+++|+ |++++|++++.|+.|++||+++      +..|..+|.+++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  251 (372)
T 1k8k_C          173 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT  251 (372)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred             cccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence                             4678888888999999999999 8999999999999999999973      347888999999


Q ss_pred             eccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          314 FNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       314 ~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      |+|++++++++       .|+.|++|++.+
T Consensus       252 ~~~~~~~l~~~-------~d~~i~i~~~~~  274 (372)
T 1k8k_C          252 FITESSLVAAG-------HDCFPVLFTYDS  274 (372)
T ss_dssp             EEETTEEEEEE-------TTSSCEEEEEET
T ss_pred             EecCCCEEEEE-------eCCeEEEEEccC
Confidence            99999999888       588888898877

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=5.4e-29  Score=223.57  Aligned_cols=227  Identities=16%  Similarity=0.135  Sum_probs=181.7

Q ss_pred             cccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEE--EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          119 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      .+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+....  .......+|...|.++.|+|++++|++++.|+.|++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            47899999999999997 689999999999999999765321  122335688889999999999999999999999999


Q ss_pred             EECCCCceeeecceeecc---------cccceec------------------cCCCCccccEEEEEEcCCC--CEEEEEe
Q 017421          196 VDVGSGTMESLANVTEIH---------DGLDFSA------------------ADDGGYSFGIFSLKFSTDG--RELVAGS  246 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~---------~~~~~~~------------------~~~~~h~~~i~~~~~sp~~--~~l~s~s  246 (372)
                      |+................         .......                  ....+|...+..++|++++  .++++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            999876643322111000         0000000                  0124688899999999875  5788999


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeE
Q 017421          247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYL  321 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l  321 (372)
                      .|+.|++||+++++.+..+.+|...|++++|+ |++++|++|+.|+.|++||++...     .+...|..+.|+|++.++
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL  271 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee
Confidence            99999999999999999999999999999999 999999999999999999998533     455689999999998888


Q ss_pred             EEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          322 IIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +++       .|+.|++||+.++..+..+..+
T Consensus       272 ~~~-------~d~~i~iwd~~~~~~~~~~~~~  296 (340)
T 4aow_A          272 CAA-------TGPSIKIWDLEGKIIVDELKQE  296 (340)
T ss_dssp             EEE-------ETTEEEEEETTTTEEEEEECCC
T ss_pred             ecc-------CCCEEEEEECCCCeEEEecccc
Confidence            777       5888999999888777766543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.1e-29  Score=230.93  Aligned_cols=211  Identities=12%  Similarity=0.100  Sum_probs=180.2

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      .+..|..+|++++|+|++++|++++.|+.|++||+.++.  .+..   ..+|...|.+++|+|++++|++++.||.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE---LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE---EECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee---ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            345689999999999999999999999999999999875  3333   45788899999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEE-eecCCCCe
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLR-ILAHTSDV  272 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~---~~~-~~~~~~~v  272 (372)
                      |+.+++........              +|...|.+++|+|++++|++++.|+.|++||++.+..   ... ...|...|
T Consensus        80 d~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i  145 (372)
T 1k8k_C           80 TLKGRTWKPTLVIL--------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  145 (372)
T ss_dssp             EEETTEEEEEEECC--------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             ECCCCeeeeeEEee--------------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence            99887643332211              3667899999999999999999999999999987752   233 35688999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEecc------------------------cccCCCCCeeEEEeccCCCeEEEEeeee
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVL------------------------LLTRSINPCNKYLFNPCNKYLIIYLILV  328 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~------------------------~~~~~~~~v~~~~~s~~g~~l~~~~~~~  328 (372)
                      .+++|+ |++++|++++.|+.|++||++                        .+..|...|.+++|+|++++|++++   
T Consensus       146 ~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---  221 (372)
T 1k8k_C          146 LSLDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS---  221 (372)
T ss_dssp             EEEEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE---
T ss_pred             eEEEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe---
Confidence            999999 899999999999999999953                        2336788999999999999999886   


Q ss_pred             EEEeeceEEEeecccceEEEEEeee
Q 017421          329 ISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       329 ~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                         .|+.|++||+.+++.+..+.+|
T Consensus       222 ---~d~~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          222 ---HDSTVCLADADKKMAVATLASE  243 (372)
T ss_dssp             ---TTTEEEEEEGGGTTEEEEEECS
T ss_pred             ---CCCEEEEEECCCCceeEEEccC
Confidence               6899999999999998888776

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.1e-28  Score=221.56  Aligned_cols=251  Identities=14%  Similarity=0.144  Sum_probs=192.1

Q ss_pred             eeeeecccCc-----cCCC-Cc-c--ccCCceeEeeeeeCCCC-----CccccCCCCceEEEEECCCCCEEEEEeCCCcE
Q 017421           83 VKMLAGREGN-----YSGR-GR-F--SAADCCHMLSRYLPVNG-----PWPVDQTTSRAYVSQFSADGSLFVAGFQASQI  148 (372)
Q Consensus        83 ~~~~~~~~~~-----~~~~-~~-~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  148 (372)
                      ...|+||...     +++. +. +  .+.|..+++|++.....     ...+.+|...|.+++|+|++++|++++.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3456677663     4443 22 2  55678899999876543     23568899999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeccee--eccccccee-------
Q 017421          149 RIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT--EIHDGLDFS-------  219 (372)
Q Consensus       149 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~-------  219 (372)
                      ++|+.........   ...+...+..+.+++++++|++++.|+.+++||+............  .....+.+.       
T Consensus       111 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          111 RLWDLTTGTTTRR---FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEETTTTEEEEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             eEEeecccceeee---ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            9999998865554   3345557889999999999999999999999998765432211100  000001111       


Q ss_pred             ---ccC-----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421          220 ---AAD-----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       220 ---~~~-----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  279 (372)
                         ...                 ..+|...|++++|+|++++|++|+.|+.|++||+++.+++..+.. ...|.+++|+ 
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~-  265 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFS-  265 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEEC-
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecC-
Confidence               111                 146889999999999999999999999999999999999888874 4689999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEeccc---------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLL---------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~---------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      |++.++ +++.|+.|++||++.               ...|...|++++|+|+|++|++++      .|+.|++||+.+|
T Consensus       266 ~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs------~Dg~v~iW~~~tG  338 (340)
T 4aow_A          266 PNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY------TDNLVRVWQVTIG  338 (340)
T ss_dssp             SSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE------TTSCEEEEEEEC-
T ss_pred             CCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe------CCCEEEEEeCCCc
Confidence            777655 556799999999862               125788999999999999999886      6999999999998


Q ss_pred             e
Q 017421          345 R  345 (372)
Q Consensus       345 ~  345 (372)
                      +
T Consensus       339 t  339 (340)
T 4aow_A          339 T  339 (340)
T ss_dssp             -
T ss_pred             C
Confidence            6

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=1.3e-29  Score=227.04  Aligned_cols=209  Identities=15%  Similarity=0.150  Sum_probs=176.7

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeee--cccCCcceEEEEECCCCCEEEEEeCCCeEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPDQRHLVYASMSPIVH  194 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  194 (372)
                      .....+|...|.+++|+|++++|++++ ||.|++|++.++........  ...|...|.+++|+|++++|++++.|+.|+
T Consensus        44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            344568999999999999999999998 99999999987643322222  236778899999999999999999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  274 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~  274 (372)
                      +||+.+++........              +|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+
T Consensus       123 ~~d~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~  188 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELT--------------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  188 (337)
T ss_dssp             EEECCCC--EEEEEEE--------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEECCCCCcceeeecc--------------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEE
Confidence            9999987632222211              35668999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      ++|+ |++++|++++.|+.|++||++...     .+...+.+++|+|++++++++.      .|+.+++||+.+++..
T Consensus       189 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          189 IDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM------ESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             EEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTSSCEE
T ss_pred             EEEC-CCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc------CCCcEEEEECCCCCeE
Confidence            9999 899999999999999999997433     5678899999999999999885      5788999999887653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=1.4e-29  Score=249.77  Aligned_cols=212  Identities=18%  Similarity=0.142  Sum_probs=179.2

Q ss_pred             cccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEE--EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      .+.+|.+.|++++|+|++ ++|++|+.|++|++|++......  .......+|...|.+++|+|++++|++|+.||.|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            467999999999999864 79999999999999999764211  112235688889999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe---ecCCCCe
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDV  272 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v  272 (372)
                      ||+.++.......                +|...|.+++|+|++++|++++.|++|++||+.........   .+|...|
T Consensus       457 wd~~~~~~~~~~~----------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v  520 (694)
T 3dm0_A          457 WDLAAGVSTRRFV----------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV  520 (694)
T ss_dssp             EETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred             EECCCCcceeEEe----------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence            9999887644332                57789999999999999999999999999998765443332   3688899


Q ss_pred             EEEEEeCCCC--CEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          273 NTVCFGDESG--HLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       273 ~~~~~sp~~~--~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      .+++|+ |++  ..|++++.|+.|++||++.      +..|...|++++|+|+|++|++++      .|+.|++||+.++
T Consensus       521 ~~~~~~-~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~------~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          521 SCVRFS-PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG------KDGVVLLWDLAEG  593 (694)
T ss_dssp             EEEEEC-SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSBCEEEETTTT
T ss_pred             EEEEEe-CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe------CCCeEEEEECCCC
Confidence            999999 665  6899999999999999873      457999999999999999999886      6999999999999


Q ss_pred             eEEEEEeee
Q 017421          345 RTFYSFMVH  353 (372)
Q Consensus       345 ~~~~~~~~h  353 (372)
                      +.+..+..+
T Consensus       594 ~~~~~~~~~  602 (694)
T 3dm0_A          594 KKLYSLEAN  602 (694)
T ss_dssp             EEEECCBCS
T ss_pred             ceEEEecCC
Confidence            988776544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=3.1e-30  Score=233.80  Aligned_cols=230  Identities=10%  Similarity=0.054  Sum_probs=189.2

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      .+.+..+.+|+.........+.+|...|.+++|+| ++++|++++.||.|++||+.++..+........|...|.+++|+
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence            45566788888877777777889999999999999 99999999999999999999987766543346788899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceec-----------------cCCCCccccEEEEEEcCCCCE
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA-----------------ADDGGYSFGIFSLKFSTDGRE  241 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~h~~~i~~~~~sp~~~~  241 (372)
                      |++++|++++.||.|++||+++++.......     ...+.+                 ....+|...|.+++|+  +++
T Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKE-----SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             TTSSEEEEEETTSCEEEEESCSHHHHHHHHH-----HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             CCCCEEEEecCCCCEEEEECCCCccccccce-----eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            9999999999999999999988764322211     000000                 0112477899999999  779


Q ss_pred             EEEEeCCCeEEEEECCCCe--------------EEEEeecCCCCeEEEEEeCCC--CCEEEEEeCCCeEEEEeccc----
Q 017421          242 LVAGSSDDCIYVYDLEANK--------------LSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVNSVLL----  301 (372)
Q Consensus       242 l~s~s~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~~~~sp~~--~~~l~s~~~dg~i~vwd~~~----  301 (372)
                      |++++.|+.|++||+.++.              .+..+..|...|++++|+ |+  +++|++++.||.|++||++.    
T Consensus       244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-MDFWQKMLALGNQVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-ECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred             EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-CCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence            9999999999999998764              377788899999999999 88  99999999999999999974    


Q ss_pred             ------ccCC--CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          302 ------LTRS--INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       302 ------~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                            +..|  ...|++++|+|++++|++++      .|+.|++||+.+
T Consensus       323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~iwd~~~  366 (366)
T 3k26_A          323 KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC------DDASIWRWDRLR  366 (366)
T ss_dssp             GCEEEEECCTTCCSCEEEEEECTTSSEEEEEE------TTSEEEEEEC--
T ss_pred             cccceEEcccccCCceEEEEeCCCCCeEEEEe------CCCEEEEEEecC
Confidence                  2344  68999999999999999886      689999999753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=230.27  Aligned_cols=208  Identities=17%  Similarity=0.111  Sum_probs=174.5

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC--CCEEEEEeCCCeEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH  194 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~  194 (372)
                      ...+.+|...|.+++|+|++++|++|+.||.|+||++..... .......+|...|++++|+|+  +++|++++.||.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            356789999999999999999999999999999999985422 222235678889999999987  99999999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--EEEEeecCCC
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTS  270 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~  270 (372)
                      +||+.+++........              +|...|.+++|+|+  +++|++++.|+.|++||++++.  ....+..|..
T Consensus        83 iwd~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHA--------------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             EEEEETTEEEEEEEEC--------------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             EEEcCCCceeEeeeec--------------CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            9999988632222211              46679999999999  9999999999999999998873  4456678999


Q ss_pred             CeEEEEEeCC------------CCCEEEEEeCCCeEEEEeccc----------ccCCCCCeeEEEeccC---CCeEEEEe
Q 017421          271 DVNTVCFGDE------------SGHLIYSGSDDNLCKVNSVLL----------LTRSINPCNKYLFNPC---NKYLIIYL  325 (372)
Q Consensus       271 ~v~~~~~sp~------------~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~v~~~~~s~~---g~~l~~~~  325 (372)
                      .|.+++|+|.            ++.+|++++.|+.|++||++.          +..|...|.+++|+|+   +++|++++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            9999999932            799999999999999999863          3368899999999999   88898886


Q ss_pred             eeeEEEeeceEEEeecccce
Q 017421          326 ILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       326 ~~~~~~~d~~i~lw~~~~~~  345 (372)
                            .|+.|++||+.++.
T Consensus       229 ------~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          229 ------QDRTCIIWTQDNEQ  242 (379)
T ss_dssp             ------TTSCEEEEEESSTT
T ss_pred             ------CCCEEEEEeCCCCC
Confidence                  68899999988763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.9e-30  Score=244.79  Aligned_cols=221  Identities=7%  Similarity=0.009  Sum_probs=175.6

Q ss_pred             ccCCceeEeeeeeCCCCC----ccccCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCeEE--------EE
Q 017421          100 SAADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSAD------GSLFVAGFQASQIRIYDVERGWKI--------QK  161 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~~~~--------~~  161 (372)
                      .+.|..+++|++......    ..+.+|.+.|++++|+|+      +.+||+++.||+|+|||+..+...        ..
T Consensus       179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p  258 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP  258 (524)
T ss_dssp             ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred             CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence            345567889998765532    235678899999999997      579999999999999999865321        01


Q ss_pred             eeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEE--EEcCCC
Q 017421          162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDG  239 (372)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~--~~sp~~  239 (372)
                      .....+|...|++++|+++ ..|++|+.||.|++||++++.....  ...             +|...|+++  .|+|++
T Consensus       259 ~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~--~~~-------------~H~~~V~sv~~~~s~~g  322 (524)
T 2j04_B          259 SLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSF--YDQ-------------VHDSYILSVSTAYSDFE  322 (524)
T ss_dssp             SEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSE--EEE-------------CSSSCEEEEEEECCTTS
T ss_pred             eEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceE--Eee-------------cccccEEEEEEEcCCCC
Confidence            1234577889999999986 4899999999999999987642111  111             577899999  578888


Q ss_pred             -CEEEEEeCCCeEEEEECCCCeEEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCee
Q 017421          240 -RELVAGSSDDCIYVYDLEANKLSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCN  310 (372)
Q Consensus       240 -~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~  310 (372)
                       ++|++++.|++|+|||++++++...+.+|..  .|.+++|+ |+++.|++++.|++|++||++.      +.+|...|+
T Consensus       323 ~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~  401 (524)
T 2j04_B          323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT  401 (524)
T ss_dssp             CCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred             CeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence             8999999999999999999887777766653  58899999 8999999999999999999874      347999999


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      +++|+|+|++|++++      .|++|++||...
T Consensus       402 sva~Sp~g~~l~Sgs------~Dgtv~lwd~~~  428 (524)
T 2j04_B          402 AIGVSRLHPMVLAGS------ADGSLIITNAAR  428 (524)
T ss_dssp             EEECCSSCCBCEEEE------TTTEEECCBSCS
T ss_pred             EEEeCCCCCeEEEEE------CCCEEEEEechH
Confidence            999999999999886      677888887643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=233.45  Aligned_cols=218  Identities=14%  Similarity=0.146  Sum_probs=181.1

Q ss_pred             ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeee----------cc
Q 017421           98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL----------AK  166 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------~~  166 (372)
                      ++...+....+|.+........+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++........          ..
T Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   96 (408)
T 4a11_B           17 RLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD   96 (408)
T ss_dssp             HHHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred             ceeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccc
Confidence            3444555667777777777778889999999999999 999999999999999999987643322111          12


Q ss_pred             cCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CCEE
Q 017421          167 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GREL  242 (372)
Q Consensus       167 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l  242 (372)
                      +|...|.+++|+| ++++|++++.||.|++||+.+++......                 +...+.++.|+|.   +.++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  159 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----------------FEETVYSHHMSPVSTKHCLV  159 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------CSSCEEEEEECSSCSSCCEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------CCCceeeeEeecCCCCCcEE
Confidence            4888999999999 78899999999999999999887654433                 2347889999885   4599


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEecccc-------------------
Q 017421          243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLLL-------------------  302 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~~-------------------  302 (372)
                      ++++.|+.|++||+++++.+..+..|...|.+++|+ |++. +|++++.||.|++||++..                   
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  238 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE  238 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTT
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeec
Confidence            999999999999999999999999999999999999 7777 6999999999999999643                   


Q ss_pred             ---cCCCCCeeEEEeccCCCeEEEEe-eeeEEEee
Q 017421          303 ---TRSINPCNKYLFNPCNKYLIIYL-ILVISIYS  333 (372)
Q Consensus       303 ---~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~d  333 (372)
                         ..|...|.+++|+|++++|++++ ++.+.+||
T Consensus       239 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence               36788999999999999998875 55666665

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-29  Score=231.99  Aligned_cols=237  Identities=11%  Similarity=0.095  Sum_probs=193.2

Q ss_pred             cCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC----CeEEEEeeecccCCcceEE
Q 017421          101 AADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER----GWKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~v~~  174 (372)
                      +.+..+.+|+.....  .+.....|...|.+++|+|++++|++++.||.|++|++..    ...+.   ...+|...|.+
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~---~~~~h~~~v~~  118 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA---RFSNHSSSVKT  118 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEE---ECCCSSSCCCE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchh---hccCCccceEE
Confidence            456678888877654  2344456899999999999999999999999999999987    22333   35678889999


Q ss_pred             EEECCC-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEE
Q 017421          175 TSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIY  252 (372)
Q Consensus       175 ~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~  252 (372)
                      ++|+|+ +++|++++.|+.|++||+.++.........       +......+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus       119 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  191 (416)
T 2pm9_A          119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP-------LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS  191 (416)
T ss_dssp             EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC-------BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred             EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc-------cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence            999998 899999999999999999887621000000       000001247779999999999 78999999999999


Q ss_pred             EEECCCCeEEEEeecC------CCCeEEEEEeCCCC-CEEEEEeCCC---eEEEEeccc-------cc-CCCCCeeEEEe
Q 017421          253 VYDLEANKLSLRILAH------TSDVNTVCFGDESG-HLIYSGSDDN---LCKVNSVLL-------LT-RSINPCNKYLF  314 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~-~~l~s~~~dg---~i~vwd~~~-------~~-~~~~~v~~~~~  314 (372)
                      +||+++++.+..+..+      ...|.+++|+ |++ .+|++++.|+   .|++||++.       +. .|...|.+++|
T Consensus       192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~  270 (416)
T 2pm9_A          192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH-PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW  270 (416)
T ss_dssp             EEETTTTEEEEEECCCCCSSCCCCCEEEEEEC-SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE
T ss_pred             EEECCCCCcceEEeccccccccCCceEEEEEC-CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe
Confidence            9999999998888876      7899999999 665 7999999998   999999974       23 68889999999


Q ss_pred             cc-CCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          315 NP-CNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       315 s~-~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      +| ++++|++++      .|+.|++||+.+++.+..+.+|.
T Consensus       271 s~~~~~~l~s~~------~dg~v~~wd~~~~~~~~~~~~~~  305 (416)
T 2pm9_A          271 CHQDEHLLLSSG------RDNTVLLWNPESAEQLSQFPARG  305 (416)
T ss_dssp             CSSCSSCEEEEE------SSSEEEEECSSSCCEEEEEECSS
T ss_pred             CCCCCCeEEEEe------CCCCEEEeeCCCCccceeecCCC
Confidence            99 899999886      68999999999999999888763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=5.2e-30  Score=238.96  Aligned_cols=182  Identities=14%  Similarity=0.122  Sum_probs=148.4

Q ss_pred             ccCCceeEeeeeeCCCCCc--cccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421          100 SAADCCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      .+.|..+++|++.......  .+.+|.+.|++++|+| ++++|++|+.||+|+|||++++. .........+...+.+++
T Consensus       138 Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~  216 (435)
T 4e54_B          138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLD  216 (435)
T ss_dssp             EETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEE
T ss_pred             EeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEE
Confidence            5667789999887655443  4568999999999998 78999999999999999998763 333333334445688999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 017421          177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYD  255 (372)
Q Consensus       177 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s~dg~i~iwd  255 (372)
                      |+|++++|++|+.||.|++||++..... ...                +|...|++++|+|++. +|++++.|+.|++||
T Consensus       217 ~~~~~~~l~~g~~dg~i~~wd~~~~~~~-~~~----------------~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd  279 (435)
T 4e54_B          217 VSASSRMVVTGDNVGNVILLNMDGKELW-NLR----------------MHKKKVTHVALNPCCDWFLATASVDQTVKIWD  279 (435)
T ss_dssp             EETTTTEEEEECSSSBEEEEESSSCBCC-CSB----------------CCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred             ECCCCCEEEEEeCCCcEeeeccCcceeE-EEe----------------cccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence            9999999999999999999999754321 111                5778999999999876 788999999999999


Q ss_pred             CCCCeEEEE---eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          256 LEANKLSLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       256 ~~~~~~~~~---~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      +++.+....   ..+|...|++++|+ |+|++|++++.||.|++||++
T Consensus       280 ~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          280 LRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             TTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESS
T ss_pred             cccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECC
Confidence            987654333   35799999999999 999999999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1e-29  Score=233.52  Aligned_cols=237  Identities=11%  Similarity=0.055  Sum_probs=192.5

Q ss_pred             ccCCceeEeeeeeCCC------CCccccCCCCceEEEEECCC----C---CEEEEEeCCCcEEEEeCCCCeE-----EEE
Q 017421          100 SAADCCHMLSRYLPVN------GPWPVDQTTSRAYVSQFSAD----G---SLFVAGFQASQIRIYDVERGWK-----IQK  161 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l~~~~~dg~i~vwd~~~~~~-----~~~  161 (372)
                      .+.+..+.+|+.....      ....+.+|...|.+++|+|+    +   ++|++++.||.|++|++.++..     +..
T Consensus        32 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  111 (397)
T 1sq9_A           32 CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK  111 (397)
T ss_dssp             EETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred             EcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence            5566788899988776      46677899999999999999    9   9999999999999999987653     333


Q ss_pred             eeecccC-----CcceEEEEEC----CCCCE-EEEEeCCCeEEEEECCC------CceeeecceeecccccceeccCCCC
Q 017421          162 DILAKSL-----RWTVTDTSLS----PDQRH-LVYASMSPIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGG  225 (372)
Q Consensus       162 ~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
                         ...|     ...|.+++|+    |++++ |++++.||.|++||+.+      +............    -.......
T Consensus       112 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  184 (397)
T 1sq9_A          112 ---LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ----GTVESPMT  184 (397)
T ss_dssp             ---ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE----EEECCSSS
T ss_pred             ---ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee----eeeccccC
Confidence               3445     4789999999    99999 99999999999999987      4432200000000    00000013


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec---C---CCCeEEEEEeCCCCCEEEEEeCC---CeEEE
Q 017421          226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---H---TSDVNTVCFGDESGHLIYSGSDD---NLCKV  296 (372)
Q Consensus       226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~sp~~~~~l~s~~~d---g~i~v  296 (372)
                      |...|.+++|+|++ +|++++.|+.|++||+++++.+..+..   |   ...|.+++|+ |++++|++++.|   +.|++
T Consensus       185 ~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i  262 (397)
T 1sq9_A          185 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITL  262 (397)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEE
T ss_pred             CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEEEecCCCCceEEE
Confidence            56789999999999 999999999999999999999999998   8   9999999999 899999999999   99999


Q ss_pred             Eeccc------ccC-------------CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          297 NSVLL------LTR-------------SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       297 wd~~~------~~~-------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      ||+++      +..             |...|.+++|+|++++|++++      .|+.|++||+.+++.+..+.
T Consensus       263 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          263 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG------WDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE------TTSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe------CCCeEEEEEcCCCceeEEEe
Confidence            99873      334             889999999999999999886      68999999999999999888

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=235.67  Aligned_cols=224  Identities=13%  Similarity=0.164  Sum_probs=179.3

Q ss_pred             ccc-cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC---CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421          118 WPV-DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  192 (372)
Q Consensus       118 ~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  192 (372)
                      ..+ .+|.+.|++++|+| ++++|++|+.||.|+|||+.+   +..... ....+|...|.+++|+|++++|++++.||.
T Consensus        56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS-SLTYDCSSTVTQITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC-SEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce-eeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence            345 78999999999999 999999999999999999876   431111 112257789999999999999999999999


Q ss_pred             EEEEECC---CCceeeecceeecccccceeccCCCCccccEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421          193 VHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       193 i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~--~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      |++||+.   .++........ ....+.+.+.   ++...+.++.  ++|++++|++++.|+.|++||+++++++..+..
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCE-CIRKINLKNF---GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG---SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEeccccCCceeeccccc-eeEEEEccCc---ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            9999995   44433222211 1112222221   1334677777  668999999999999999999999999999987


Q ss_pred             --CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------c-CCCCCeeEEEec----cCCCeEEEEeeeeEEEeec
Q 017421          268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------T-RSINPCNKYLFN----PCNKYLIIYLILVISIYSP  334 (372)
Q Consensus       268 --~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~-~~~~~v~~~~~s----~~g~~l~~~~~~~~~~~d~  334 (372)
                        |...|++++|+ |++++|++|+.||.|++||++..      . .+..+|.+++|+    |++++|++++      .|+
T Consensus       211 ~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~------~dg  283 (437)
T 3gre_A          211 SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS------SKT  283 (437)
T ss_dssp             CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES------TTE
T ss_pred             CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc------CCC
Confidence              88999999999 99999999999999999999732      2 566789999555    5688888886      689


Q ss_pred             eEEEeecccceEEEEEeee
Q 017421          335 NILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       335 ~i~lw~~~~~~~~~~~~~h  353 (372)
                      .|++||+.+++.+..+.+|
T Consensus       284 ~i~iwd~~~~~~~~~~~~~  302 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINS  302 (437)
T ss_dssp             EEEEEETTTTEEEEEEESS
T ss_pred             cEEEEEcCCCcEEEEEEcC
Confidence            9999999999999998877

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.6e-29  Score=227.07  Aligned_cols=223  Identities=13%  Similarity=0.102  Sum_probs=180.2

Q ss_pred             ccCCceeEeeeeeCCC-CCccccCCCCceEEEE------ECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccC-Cc
Q 017421          100 SAADCCHMLSRYLPVN-GPWPVDQTTSRAYVSQ------FSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSL-RW  170 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~-~~  170 (372)
                      .+.+..+.+|+..... ....+.+|...|.+++      |+|++++|++++.||.|++||+.++. .+.......++ ..
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence            4556778899888776 6777889999999995      57899999999999999999999875 33332221222 33


Q ss_pred             ceEEEE----ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC---CCCEEE
Q 017421          171 TVTDTS----LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELV  243 (372)
Q Consensus       171 ~v~~~~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---~~~~l~  243 (372)
                      .+.++.    |+|+++++++++.||.|++||+++++.....                 .|...|.+++|+|   ++.+|+
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-----------------NIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEESCSSSSCCEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-----------------CCCCceEEEEcCCCCCCCCEEE
Confidence            688888    7899999999999999999999988753322                 2556899999999   999999


Q ss_pred             EEeCCCeEEEEECCCCeEEEEee-----cCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEeccc----------------
Q 017421          244 AGSSDDCIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLL----------------  301 (372)
Q Consensus       244 s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~----------------  301 (372)
                      +++.||.|++||+++++....+.     +|...|++++|+ |++. +|++++.||.|++||++.                
T Consensus       229 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence            99999999999998876544443     899999999999 8887 899999999999999862                


Q ss_pred             ---------ccCCCCCeeEEEeccCCCeEE-EEeeeeEEEeeceEEEeecccceE
Q 017421          302 ---------LTRSINPCNKYLFNPCNKYLI-IYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       302 ---------~~~~~~~v~~~~~s~~g~~l~-~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                               +..|...|++++|+|+|++|+ +++      .|+.|++||+.+.+.
T Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~------~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS------FDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE------TTSEEEEEEECC---
T ss_pred             ccccceeeccccCCCCeeEEEEcCCCCeEEEEec------CCCcEEEEECCCccc
Confidence                     336888999999999999998 564      689999999987654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3.5e-29  Score=229.91  Aligned_cols=225  Identities=16%  Similarity=0.051  Sum_probs=184.6

Q ss_pred             ccCCceeEeeeeeCCCC-----CccccCC-----CCceEEEEEC----CCCCE-EEEEeCCCcEEEEeCCC------CeE
Q 017421          100 SAADCCHMLSRYLPVNG-----PWPVDQT-----TSRAYVSQFS----ADGSL-FVAGFQASQIRIYDVER------GWK  158 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~~~-l~~~~~dg~i~vwd~~~------~~~  158 (372)
                      .+.+..+.+|+......     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+..      +..
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            45567788999887776     6677788     5999999999    99999 99999999999999987      433


Q ss_pred             EE-----Eee----ecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCc---
Q 017421          159 IQ-----KDI----LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY---  226 (372)
Q Consensus       159 ~~-----~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---  226 (372)
                      +.     ...    ....|...|.+++|+|++ ++++++.||.|++||+++++........             .+|   
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~h~~~  232 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ-------------HSMINN  232 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-------------C---CC
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc-------------cccccc
Confidence            32     211    014567789999999999 9999999999999999987754433310             015   


Q ss_pred             cccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEeec-------------CCCCeEEEEEeCCCCCEEEEEeC
Q 017421          227 SFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILA-------------HTSDVNTVCFGDESGHLIYSGSD  290 (372)
Q Consensus       227 ~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~sp~~~~~l~s~~~  290 (372)
                      ...|.+++|+|++++|++++.|   +.|++||+++++.+..+..             |...|.+++|+ |++++|++++.
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  311 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGW  311 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC-SSSSEEEEEET
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC-CCCCEEEEEeC
Confidence            5689999999999999999999   9999999999999999988             99999999999 99999999999


Q ss_pred             CCeEEEEeccc------cc------CC---------------CCCeeEEEeccCC----------CeEEEEeeeeEEEee
Q 017421          291 DNLCKVNSVLL------LT------RS---------------INPCNKYLFNPCN----------KYLIIYLILVISIYS  333 (372)
Q Consensus       291 dg~i~vwd~~~------~~------~~---------------~~~v~~~~~s~~g----------~~l~~~~~~~~~~~d  333 (372)
                      ||.|++||++.      +.      .|               ...|++++|+|+|          ++|++++      .|
T Consensus       312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~------~d  385 (397)
T 1sq9_A          312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC------LD  385 (397)
T ss_dssp             TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE------TT
T ss_pred             CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec------CC
Confidence            99999999972      33      56               8899999999998          6888776      69


Q ss_pred             ceEEEeecccce
Q 017421          334 PNILLDNYFLLR  345 (372)
Q Consensus       334 ~~i~lw~~~~~~  345 (372)
                      +.|++|++.+|+
T Consensus       386 g~i~iw~~~~g~  397 (397)
T 1sq9_A          386 RSIRWFREAGGK  397 (397)
T ss_dssp             TEEEEEEEEC--
T ss_pred             CcEEEEEcCCCC
Confidence            999999998874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.9e-28  Score=225.95  Aligned_cols=229  Identities=17%  Similarity=0.179  Sum_probs=188.0

Q ss_pred             ccCCceeEeeeeeCCCCCccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      .+.+..+.+|+.........+.. |...|.+++|+|++++|++|+.||.|++||+.++..+..   ...|...|.+++| 
T Consensus       109 ~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~-  184 (401)
T 4aez_A          109 VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT---MAGHQARVGCLSW-  184 (401)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEE-
T ss_pred             EECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE---ecCCCCceEEEEE-
Confidence            55567788888877665555554 899999999999999999999999999999998876665   4578889999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                       +++.+++++.||.|++||++.... .....                +|...|.+++|+|++++|++++.|+.|++||++
T Consensus       185 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  247 (401)
T 4aez_A          185 -NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ----------------GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR  247 (401)
T ss_dssp             -ETTEEEEEETTSEEEEEETTSSSCEEEEEE----------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             -CCCEEEEEcCCCCEEEEecccCcceeeEEc----------------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence             567999999999999999985432 21111                467799999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      +++.+..+..|...|.+++|+|....++++++  .|+.|++||+++..     .+...|.+++|+|++++++++.+.   
T Consensus       248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~---  324 (401)
T 4aez_A          248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF---  324 (401)
T ss_dssp             CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECT---
T ss_pred             CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeec---
Confidence            99999999999999999999943556777765  79999999997433     466789999999999999985311   


Q ss_pred             EeeceEEEeecccceEEEE--Eeee
Q 017421          331 IYSPNILLDNYFLLRTFYS--FMVH  353 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~--~~~h  353 (372)
                       .|+.|++|++.+++....  +.+|
T Consensus       325 -~dg~i~v~~~~~~~~~~~~~~~~h  348 (401)
T 4aez_A          325 -PDNNLSIWSYSSSGLTKQVDIPAH  348 (401)
T ss_dssp             -TTCEEEEEEEETTEEEEEEEEECC
T ss_pred             -CCCcEEEEecCCccceeEEEecCC
Confidence             478999999988665443  4444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=4.8e-29  Score=249.88  Aligned_cols=235  Identities=14%  Similarity=0.145  Sum_probs=200.8

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR  169 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  169 (372)
                      +++++.+   ...+..+.+|+.........+.+|...|.+++|+|++++|++++.||.|+||++.++..+..   ..+|.
T Consensus        21 ~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~   97 (814)
T 3mkq_A           21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAHP   97 (814)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECCS
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EecCC
Confidence            3444433   44566788998877777778889999999999999999999999999999999999876665   45788


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeC
Q 017421          170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS  247 (372)
Q Consensus       170 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~  247 (372)
                      ..|.+++|+|++++|++++.||.|++||+.++.. .....                +|...|.+++|+| +++.|++++.
T Consensus        98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------------~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----------------GHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE----------------CCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc----------------CCCCcEEEEEEEcCCCCEEEEEeC
Confidence            8999999999999999999999999999987632 22211                4667999999999 8899999999


Q ss_pred             CCeEEEEECCCCeEEEEeecCC-CCeEEEEEeCC--CCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCC
Q 017421          248 DDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDE--SGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCN  318 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~--~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g  318 (372)
                      ||.|++||+.++.....+..+. ..+.+++|+ |  ++.+|++++.||.|++||+++      +..|...|.+++|+|+|
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  240 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY-PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL  240 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCCCEEEEC-CSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred             CCeEEEEECCCCcceeEEecCCCCCEEEEEEE-ECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            9999999999888777776554 899999999 6  899999999999999999873      34788999999999999


Q ss_pred             CeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          319 KYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +++++++      .|+.|++||..+++.+..+..|
T Consensus       241 ~~l~~~~------~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          241 PIIISGS------EDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             SEEEEEE------TTSCEEEEETTTCSEEEEECCS
T ss_pred             CEEEEEe------CCCeEEEEECCCCcEEEEeecC
Confidence            9999886      6899999999999988887665

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=8.4e-29  Score=226.62  Aligned_cols=233  Identities=12%  Similarity=0.056  Sum_probs=180.3

Q ss_pred             ccCCceeEeeeeeCCCCCcccc--CCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPVD--QTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      .+.+..+.+|+.........+.  +|...|.+++|+| ++++|++++.|+.|++||+.+. .+........+...|.+++
T Consensus        92 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~  170 (383)
T 3ei3_B           92 GSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVD  170 (383)
T ss_dssp             EEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEE
T ss_pred             EcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEE
Confidence            4556788899887666555554  6999999999999 7899999999999999999864 4444444445567899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 017421          177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYD  255 (372)
Q Consensus       177 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s~dg~i~iwd  255 (372)
                      |+|++++|++++.|+.|++||++ ++......                +|...|.+++|+|+++ +|++++.|+.|++||
T Consensus       171 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~----------------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  233 (383)
T 3ei3_B          171 VSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK----------------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWD  233 (383)
T ss_dssp             EETTTTEEEEEETTSEEEEEETT-SCEEEEEE----------------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ECCCCCEEEEECCCCCEEEEECC-CCEEEEec----------------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe
Confidence            99999999999999999999995 33322221                4667999999999998 999999999999999


Q ss_pred             CCC----CeEEEEeecCCCCeEEEEEeCC-CCCEEEEEeCCCeEEEEeccccc-------------CCCCCeeEEEeccC
Q 017421          256 LEA----NKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVNSVLLLT-------------RSINPCNKYLFNPC  317 (372)
Q Consensus       256 ~~~----~~~~~~~~~~~~~v~~~~~sp~-~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~v~~~~~s~~  317 (372)
                      +++    +..+..+ +|...|.+++|+ | ++++|++++.|+.|++||+++..             .+...+. +.|+|+
T Consensus       234 ~~~~~~~~~~~~~~-~~~~~v~~~~~s-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~  310 (383)
T 3ei3_B          234 LRNIKDKNSYIAEM-PHEKPVNAAYFN-PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPM  310 (383)
T ss_dssp             GGGCCSTTCEEEEE-ECSSCEEEEEEC-TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSS
T ss_pred             CCCCCcccceEEEe-cCCCceEEEEEc-CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCC
Confidence            998    5666666 699999999999 7 99999999999999999987432             1223333 244444


Q ss_pred             CCeEEEEee--ee-EEEeeceEEEeecccceEEEEEeee
Q 017421          318 NKYLIIYLI--LV-ISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       318 g~~l~~~~~--~~-~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +..++++..  +. ....|+.|++||+.+++.+..+.+|
T Consensus       311 ~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          311 YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             SSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             CCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCC
Confidence            444433210  00 0015899999999999999888763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=8.8e-29  Score=229.03  Aligned_cols=234  Identities=18%  Similarity=0.179  Sum_probs=185.2

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+.........+.+|...|.+++|+|++++|++|+.|+.|++||+.++..+..   ..+|...|.+++|+|
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~~~h~~~v~~~~~~~  191 (420)
T 3vl1_A          115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT---LIGHRATVTDIAIID  191 (420)
T ss_dssp             EETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE---EECCSSCEEEEEEET
T ss_pred             EECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE---EcCCCCcEEEEEEcC
Confidence            45566788888766655566679999999999999999999999999999999998866554   457888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeeccc----ccceeccCC----CCccccEEEEEEcCCCCEEEEEeCCCeE
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----GLDFSAADD----GGYSFGIFSLKFSTDGRELVAGSSDDCI  251 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~h~~~i~~~~~sp~~~~l~s~s~dg~i  251 (372)
                      ++++|++++.|+.|++||+++++..........+.    .+.+.+...    ..+...+.+++|+|++++|++++.||.|
T Consensus       192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  271 (420)
T 3vl1_A          192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI  271 (420)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE
T ss_pred             CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE
Confidence            99999999999999999999887654443211111    111111110    0133466777789999999999999999


Q ss_pred             EEEECCCCeEEEEee-cCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeE
Q 017421          252 YVYDLEANKLSLRIL-AHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYL  321 (372)
Q Consensus       252 ~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l  321 (372)
                      ++||+++++.+..+. .|...|.+++|+ |++. +|++|+.||.|++||++...        .+...|..+.| +++++|
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l  349 (420)
T 3vl1_A          272 TVHNVFSKEQTIQLPSKFTCSCNSLTVD-GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALF  349 (420)
T ss_dssp             EEEETTTCCEEEEECCTTSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEE
T ss_pred             EEEECCCCceeEEcccccCCCceeEEEe-CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEE
Confidence            999999988777665 588899999999 7777 99999999999999997432        26677888855 577888


Q ss_pred             EEEeeeeEEEeeceEEEeecccc
Q 017421          322 IIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      ++++      .|+.|++|++...
T Consensus       350 ~s~~------~d~~v~iw~~~~~  366 (420)
T 3vl1_A          350 VSSG------FDTSIKLDIISDP  366 (420)
T ss_dssp             EEET------TTEEEEEEEECCT
T ss_pred             EEec------CCccEEEEeccCC
Confidence            8876      6899999998763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.4e-28  Score=219.13  Aligned_cols=254  Identities=14%  Similarity=0.117  Sum_probs=201.1

Q ss_pred             eeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 017421           84 KMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER  155 (372)
Q Consensus        84 ~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  155 (372)
                      ..+.+|...     +++++.+   .+.+..+.+|+.........+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            334555542     4555433   44566788998887777788899999999999999999999999999999999999


Q ss_pred             CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCceeeecceee--------------ccccc
Q 017421          156 GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTE--------------IHDGL  216 (372)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~--------------~~~~~  216 (372)
                      +..+....    +...+.++.|+|+++++++++.+     +.|.+||+..+..........              ....+
T Consensus       106 ~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          106 GQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             CCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            87666532    56689999999999999999998     999999987654211100000              00011


Q ss_pred             ceecc-------------------C-------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421          217 DFSAA-------------------D-------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       217 ~~~~~-------------------~-------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      .+.+.                   .       ..+|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +..
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~  260 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC  260 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence            11111                   0       02477899999999999999999999999999999999888887 778


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCC--------------eEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          271 DVNTVCFGDESGHLIYSGSDDN--------------LCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg--------------~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      .+.+++|+ |+++++++++.++              .+++||+.+      +..|...|++++|+|++++|++++     
T Consensus       261 ~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-----  334 (369)
T 3zwl_B          261 PLNTAVIT-PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG-----  334 (369)
T ss_dssp             CEEEEEEC-SSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-----
T ss_pred             CceeEEec-CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc-----
Confidence            99999999 9999999999888              899999873      447899999999999999999886     


Q ss_pred             EeeceEEEeecccceEEEE
Q 017421          331 IYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~  349 (372)
                       .|+.|++|++..+.....
T Consensus       335 -~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          335 -EDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             -TTSEEEEEEECHHHHTCC
T ss_pred             -CCCeEEEEECccccchhH
Confidence             689999999988764443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=223.28  Aligned_cols=217  Identities=15%  Similarity=0.114  Sum_probs=176.2

Q ss_pred             eeCCCCCccccCCCCceEEEEECCC---CCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEEE
Q 017421          111 YLPVNGPWPVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVY  186 (372)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  186 (372)
                      ..+......+.+|.+.|++++|+|+   |++|++|+.||.|+||++.+ +..+..  ...+|...|.+++|+|++++|++
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEE
Confidence            3344455667899999999999999   69999999999999999987 444322  24568889999999999999999


Q ss_pred             EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 017421          187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEANKLSLR  264 (372)
Q Consensus       187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  264 (372)
                      ++.||.|++||+.+++.....                 +|...|.+++|  +|++++|++++.|+.|++||+++++.+..
T Consensus       104 ~~~dg~v~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQIA-----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             EETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             EcCCCcEEEEEcCCCCceeec-----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            999999999999988764422                 26679999999  89999999999999999999998877666


Q ss_pred             eecCC-----------------------------------------CCeEEEEEeCCCCC----EEEEEeCCCeEEEEec
Q 017421          265 ILAHT-----------------------------------------SDVNTVCFGDESGH----LIYSGSDDNLCKVNSV  299 (372)
Q Consensus       265 ~~~~~-----------------------------------------~~v~~~~~sp~~~~----~l~s~~~dg~i~vwd~  299 (372)
                      +..+.                                         ..+.++++. ++..    .+++++.||.|++||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE-ECTTSCEEEEEEEETTSEEEEEES
T ss_pred             EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc-ccCCCCCCeEEEecCCCcEEEEec
Confidence            65432                                         233444444 3332    3999999999999998


Q ss_pred             ccc---------cCCCC------------CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          300 LLL---------TRSIN------------PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       300 ~~~---------~~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +..         ..|..            +|++++|+|++++|++++      .|+.|++||+.+++.+..+.+|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~  314 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG------SDGRFSFWDKDARTKLKTSEQL  314 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE------TTSCEEEEETTTTEEEEECCCC
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc------cCCeEEEEECCCCcEEEEecCC
Confidence            743         24443            799999999999999886      7999999999999999888776

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=5.3e-28  Score=215.01  Aligned_cols=226  Identities=14%  Similarity=0.107  Sum_probs=179.5

Q ss_pred             ccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe---------------
Q 017421          100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD---------------  162 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------------  162 (372)
                      .+.|+.+++|+....+....  +.+|...|.+++|+|++++|++|+.||+|++|++.+++.+...               
T Consensus        41 vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~  120 (318)
T 4ggc_A           41 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY  120 (318)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT
T ss_pred             EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC
Confidence            34577889998877664444  4578889999999999999999999999999999987654332               


Q ss_pred             -----------------------eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccccee
Q 017421          163 -----------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS  219 (372)
Q Consensus       163 -----------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  219 (372)
                                             ....+|...+..+.++++++++++++.|+.|++||+++++..........       
T Consensus       121 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------  193 (318)
T 4ggc_A          121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-------  193 (318)
T ss_dssp             EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-------
T ss_pred             EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec-------
Confidence                                   11235666788999999999999999999999999988764322221111       


Q ss_pred             ccCCCCccccEEEEEEcCCCCEE---EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeE
Q 017421          220 AADDGGYSFGIFSLKFSTDGREL---VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLC  294 (372)
Q Consensus       220 ~~~~~~h~~~i~~~~~sp~~~~l---~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i  294 (372)
                           .+...|.++.++|++..+   ++++.++.|++||........... +...+..+.|+ +++..+++++  .|+.|
T Consensus       194 -----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~-~~~~~~~~~sg~~d~~i  266 (318)
T 4ggc_A          194 -----QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWS-PHYKELISGHGFAQNQL  266 (318)
T ss_dssp             -----CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEE-TTTTEEEEEECTTTCCE
T ss_pred             -----ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeec-ccccceEEEEEcCCCEE
Confidence                 355689999999976533   456678999999999887765554 67789999999 7777776654  79999


Q ss_pred             EEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          295 KVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       295 ~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      ++||+++      +.+|...|++++|+|+|++|++++      .|++|++||+....
T Consensus       267 ~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s------~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA------ADETLRLWRCFELD  317 (318)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE------TTTEEEEECCSCCC
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCCeEEEEECCCCC
Confidence            9999873      458999999999999999999887      79999999987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=233.36  Aligned_cols=232  Identities=15%  Similarity=0.131  Sum_probs=191.0

Q ss_pred             ccCCceeEeeeeeC----CCCCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCe------EEEEeeecccC
Q 017421          100 SAADCCHMLSRYLP----VNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGW------KIQKDILAKSL  168 (372)
Q Consensus       100 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~  168 (372)
                      .+.+..+.+|+...    ......+.+|...|.+++|+|+ +++|++++.|+.|++||+.++.      ..........|
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence            44567788888876    2345567889999999999998 8999999999999999999875      33332234577


Q ss_pred             CcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEe
Q 017421          169 RWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGS  246 (372)
Q Consensus       169 ~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s  246 (372)
                      ...|.+++|+|+ +.+|++++.|+.|++||+++++...........          .+|...|.+++|+|++ .+|++++
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~~  234 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN----------SGIKQQLSVVEWHPKNSTRVATAT  234 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS----------SCCCCCEEEEEECSSCTTEEEEEE
T ss_pred             CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc----------cccCCceEEEEECCCCCCEEEEEE
Confidence            889999999998 789999999999999999988765443322111          1346789999999997 6899999


Q ss_pred             CCC---eEEEEECCCC-eEEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEec
Q 017421          247 SDD---CIYVYDLEAN-KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFN  315 (372)
Q Consensus       247 ~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s  315 (372)
                      .|+   .|++||++++ .++..+. +|...|.+++|+|.++++|++++.|+.|++||+++      +..|...|.+++|+
T Consensus       235 ~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC
Confidence            998   9999999986 5667777 89999999999943999999999999999999874      34788999999999


Q ss_pred             cCC-CeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          316 PCN-KYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       316 ~~g-~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      |++ .+|++++      .|+.|++|++.+++..
T Consensus       315 ~~~~~~l~s~~------~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          315 PEAPDLFACAS------FDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             TTCTTEEEECC------SSSEEEEEESCCCCCS
T ss_pred             CCCCCEEEEEe------cCCcEEEEEccCCCCC
Confidence            999 7888776      6899999999887643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.6e-28  Score=220.37  Aligned_cols=213  Identities=9%  Similarity=-0.011  Sum_probs=169.2

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE-EEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVH  194 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  194 (372)
                      ..+.+|.+.|++++|+|++++|++|+.||.|+||++.++... .......+|...|.+++|+|  ++++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456789999999999999999999999999999999875321 22223557888999999999  699999999999999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeEEEEee------
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRIL------  266 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~------  266 (372)
                      +||++++.............  .     ..+|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.      
T Consensus        85 vwd~~~~~~~~~~~~~~~~~--~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLC--T-----LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEE--E-----ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             EEecCCCcccccccCcceee--e-----ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            99998874311100000000  0     0146779999999999  9999999999999999998876433322      


Q ss_pred             -------cCCCCeEEEEEeCCC---CCEEEEEeCCCeEEEEecc--------cccCCCCCeeEEEeccCC----CeEEEE
Q 017421          267 -------AHTSDVNTVCFGDES---GHLIYSGSDDNLCKVNSVL--------LLTRSINPCNKYLFNPCN----KYLIIY  324 (372)
Q Consensus       267 -------~~~~~v~~~~~sp~~---~~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~~~~~s~~g----~~l~~~  324 (372)
                             .|...+.+++|+ |+   +.+|++++.|+.+.+|+..        .+..|...|++++|+|++    ++|+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWC-PSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEEC-CCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             ccccccCCcccceeEEEec-cCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence                   577899999999 65   8999999999999888754        344788999999999998    788887


Q ss_pred             eeeeEEEeeceEEEeecccc
Q 017421          325 LILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       325 ~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +      .|+.|++||+..+
T Consensus       237 ~------~dg~i~iwd~~~~  250 (351)
T 3f3f_A          237 C------KDGRIRIFKITEK  250 (351)
T ss_dssp             E------TTSCEEEEEEEEC
T ss_pred             c------CCCeEEEEeCCCC
Confidence            6      6888888888775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.3e-28  Score=246.78  Aligned_cols=212  Identities=16%  Similarity=0.132  Sum_probs=187.4

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|.+.|.+++|+|++++|++++.||.|+|||+.++..+..   ...|..+|.+++|+|++++|++++.||.|++|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS---IQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE---EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            345688999999999999999999999999999999999876665   44788899999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV  275 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~  275 (372)
                      |+.+++......                +|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.++
T Consensus        83 ~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred             ECCCCcEEEEEe----------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence            999887644332                46779999999999999999999999999999987 6778888999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEecc--CCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNP--CNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +|+|.++..|++++.||.|++||++...       .+...+..++|+|  ++.++++++      .|+.|++||+.+++.
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~  220 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS------DDLTIKIWDYQTKSC  220 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC------TTSEEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe------CCCEEEEEECCCCcE
Confidence            9993389999999999999999986322       3448899999999  999999886      689999999999999


Q ss_pred             EEEEeee
Q 017421          347 FYSFMVH  353 (372)
Q Consensus       347 ~~~~~~h  353 (372)
                      +..+.+|
T Consensus       221 ~~~~~~~  227 (814)
T 3mkq_A          221 VATLEGH  227 (814)
T ss_dssp             EEEEECC
T ss_pred             EEEEcCC
Confidence            9888877

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=3.9e-28  Score=225.21  Aligned_cols=234  Identities=15%  Similarity=0.104  Sum_probs=171.9

Q ss_pred             ccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEee--------------
Q 017421          100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------  163 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------  163 (372)
                      .+.|..+++|+.........  +.+|...|++++|+|+|++|++|+.||.|+|||+.+++.+....              
T Consensus       121 vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~  200 (420)
T 4gga_A          121 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY  200 (420)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC
Confidence            44567888998876664443  45788899999999999999999999999999999886554311              


Q ss_pred             ------------------------ecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccccee
Q 017421          164 ------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS  219 (372)
Q Consensus       164 ------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  219 (372)
                                              ...+|...+..+.|+|+++++++++.|+.+++|+..+++........         
T Consensus       201 ~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~---------  271 (420)
T 4gga_A          201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT---------  271 (420)
T ss_dssp             EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE---------
T ss_pred             EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee---------
Confidence                                    11234445556666666666666666666666666554421111000         


Q ss_pred             ccCCCCccccEEEEEEcCCC-CEEEE--EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeE
Q 017421          220 AADDGGYSFGIFSLKFSTDG-RELVA--GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLC  294 (372)
Q Consensus       220 ~~~~~~h~~~i~~~~~sp~~-~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i  294 (372)
                         ...|...|.+++|+|++ .++++  |+.|++|++||+.++++...+..| ..+.++.|+ ++++.+++++  .|+.|
T Consensus       272 ---~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~-~~~~~lv~~sg~~d~~I  346 (420)
T 4gga_A          272 ---FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWS-PHYKELISGHGFAQNQL  346 (420)
T ss_dssp             ---ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEE-TTTTEEEEEECTTTCCE
T ss_pred             ---ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeec-CCCCeEEEEEecCCCEE
Confidence               02477799999999976 45554  457999999999999998888755 578899999 8888887765  78999


Q ss_pred             EEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          295 KVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       295 ~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +|||+++      +.+|...|++++|+|+|++|++++      .|++|++||+....+.+....+
T Consensus       347 ~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s------~D~tvriWdv~~~~~~~~~~~~  405 (420)
T 4gga_A          347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA------ADETLRLWRCFELDPARRRERE  405 (420)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE------TTTEEEEECCSCSSCC------
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCCeEEEEECCCCCccchhhhc
Confidence            9999873      458999999999999999999887      7999999999877665554444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=229.92  Aligned_cols=230  Identities=13%  Similarity=0.110  Sum_probs=179.7

Q ss_pred             ccCCceeEeeeeeCCCC-----------CccccCCC------------CceEEEEECCCC--CEEEEEeCCCcEEEEeCC
Q 017421          100 SAADCCHMLSRYLPVNG-----------PWPVDQTT------------SRAYVSQFSADG--SLFVAGFQASQIRIYDVE  154 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~------------~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~  154 (372)
                      .+.+..+.+|+......           ...+.+|.            ..|.+++|+|++  .+|++++.|+.|++|++.
T Consensus        46 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~  125 (447)
T 3dw8_B           46 GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKIS  125 (447)
T ss_dssp             EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEE
T ss_pred             EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecc
Confidence            45567888998876552           45677898            889999999998  899999999999999987


Q ss_pred             CCeEEE-------------------------------------EeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          155 RGWKIQ-------------------------------------KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       155 ~~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      .+....                                     ......+|...|.+++|+|++++|+++ .|+.|++||
T Consensus       126 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd  204 (447)
T 3dw8_B          126 ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWH  204 (447)
T ss_dssp             EEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEE
T ss_pred             cccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEE
Confidence            643311                                     012245788899999999999999998 799999999


Q ss_pred             CCCCc-eeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE----EEEeecCCC-
Q 017421          198 VGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL----SLRILAHTS-  270 (372)
Q Consensus       198 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~-  270 (372)
                      +++.. ........         +....+|...|.+++|+|++ ++|++|+.||.|++||+++++.    ...+..|.. 
T Consensus       205 ~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  275 (447)
T 3dw8_B          205 LEITDRSFNIVDIK---------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDP  275 (447)
T ss_dssp             TTEEEEEEEEEECC---------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---
T ss_pred             CCCCCceeeeeecc---------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCc
Confidence            98433 22211100         00111477799999999998 9999999999999999999886    678888876 


Q ss_pred             -----------CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-c------cCCCCC---------------eeEEEeccC
Q 017421          271 -----------DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-L------TRSINP---------------CNKYLFNPC  317 (372)
Q Consensus       271 -----------~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-~------~~~~~~---------------v~~~~~s~~  317 (372)
                                 .|.+++|+ |++++|++++. +.|++||++. .      ..|...               +..++|+|+
T Consensus       276 ~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~  353 (447)
T 3dw8_B          276 SNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS  353 (447)
T ss_dssp             --CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT
T ss_pred             cccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCC
Confidence                       89999999 89999999998 9999999974 2      233321               234999999


Q ss_pred             CCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          318 NKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       318 g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      +++|++++      .|+.|++||+.+++.+
T Consensus       354 ~~~l~s~s------~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          354 DSVVMTGS------YNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             SSEEEEEC------STTEEEEEETTTCCEE
T ss_pred             CCEEEEec------cCCEEEEEEcCCCcce
Confidence            99999886      7999999999998876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=3e-28  Score=226.68  Aligned_cols=225  Identities=11%  Similarity=0.103  Sum_probs=182.2

Q ss_pred             ccCCceeEeeeeeC----------CCCCccccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe----EEEEeee
Q 017421          100 SAADCCHMLSRYLP----------VNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGW----KIQKDIL  164 (372)
Q Consensus       100 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~----~~~~~~~  164 (372)
                      .+.+..+.+|+...          ......+.+|...|.+++|+|+++ +|++|+.||.|++|++..+.    .+.....
T Consensus       147 ~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  226 (430)
T 2xyi_A          147 KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI  226 (430)
T ss_dssp             ECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEE
T ss_pred             ECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecccee
Confidence            34456788888876          455667789999999999999988 99999999999999998732    2222233


Q ss_pred             cccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EE
Q 017421          165 AKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL  242 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l  242 (372)
                      ...|...|.+++|+| ++.+|++++.||.|++||++++..........             .|...|++++|+|++. +|
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~v~~i~~~p~~~~~l  293 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-------------AHTAEVNCLSFNPYSEFIL  293 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-------------CCSSCEEEEEECSSCTTEE
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-------------cCCCCeEEEEeCCCCCCEE
Confidence            557888999999999 77889999999999999999764211111111             3667999999999987 68


Q ss_pred             EEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEEEeCCCC-CEEEEEeCCCeEEEEeccc-------------------
Q 017421          243 VAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVNSVLL-------------------  301 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~-~~l~s~~~dg~i~vwd~~~-------------------  301 (372)
                      ++|+.||.|++||+++ ..++..+..|...|.+++|+ |++ .+|++++.|+.|++||++.                   
T Consensus       294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s-p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  372 (430)
T 2xyi_A          294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF  372 (430)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC-SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEE
T ss_pred             EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC-CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEE
Confidence            8999999999999998 56788888999999999999 666 5899999999999999975                   


Q ss_pred             -ccCCCCCeeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccc
Q 017421          302 -LTRSINPCNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       302 -~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                       ..+|...|++++|+|++. +|++++      .|+.|++|++...
T Consensus       373 ~~~~h~~~v~~~~~~p~~~~~l~s~s------~dg~i~iw~~~~~  411 (430)
T 2xyi_A          373 IHGGHTAKISDFSWNPNEPWIICSVS------EDNIMQVWQMAEN  411 (430)
T ss_dssp             ECCCCSSCEEEEEECSSSTTEEEEEE------TTSEEEEEEECHH
T ss_pred             EcCCCCCCceEEEECCCCCCEEEEEE------CCCCEEEeEcccc
Confidence             125778899999999999 666665      6899999988654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.6e-28  Score=222.77  Aligned_cols=218  Identities=13%  Similarity=0.049  Sum_probs=184.7

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEee----------------
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----------------  163 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------------  163 (372)
                      .+.+..+.+|+ ........+..|...|.+++|+|++++|++++.|+.|++||+.++..+....                
T Consensus       126 ~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (425)
T 1r5m_A          126 GVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG  204 (425)
T ss_dssp             EETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred             EeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence            44556788887 4555566778899999999999999999999999999999998775543211                


Q ss_pred             -------------------------------------ecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          164 -------------------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       164 -------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                                                           ....|...|.+++|+|++++|++++.|+.|++||+.+++....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  284 (425)
T 1r5m_A          205 DGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC  284 (425)
T ss_dssp             -CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE
T ss_pred             CcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE
Confidence                                                 1235667899999999999999999999999999988765433


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEE
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY  286 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~  286 (372)
                      ..                +|...|.+++|+|++ ++++++.|+.|++||+++++.+..+..|...|.+++|+ |++++|+
T Consensus       285 ~~----------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~  346 (425)
T 1r5m_A          285 FY----------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS-QDGQKYA  346 (425)
T ss_dssp             EC----------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC-TTSSEEE
T ss_pred             ec----------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc-CCCCEEE
Confidence            32                466799999999999 99999999999999999999999999999999999999 9999999


Q ss_pred             EEeCCCeEEEEeccccc--------------------------CCCC--CeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421          287 SGSDDNLCKVNSVLLLT--------------------------RSIN--PCNKYLFNPCNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       287 s~~~dg~i~vwd~~~~~--------------------------~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                      +++.||.|++||++...                          .|..  .|++++|+|++++|++++      .|+.|++
T Consensus       347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i  420 (425)
T 1r5m_A          347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY------SLQEGSV  420 (425)
T ss_dssp             EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE------SSSCCEE
T ss_pred             EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe------cCceEEE
Confidence            99999999999986322                          4544  999999999999998886      6899999


Q ss_pred             eecc
Q 017421          339 DNYF  342 (372)
Q Consensus       339 w~~~  342 (372)
                      |++.
T Consensus       421 w~~~  424 (425)
T 1r5m_A          421 VAIP  424 (425)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            9874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.9e-28  Score=224.64  Aligned_cols=226  Identities=12%  Similarity=0.023  Sum_probs=182.5

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+.........+.+|...|.+++|  +++.|++|+.||.|++||+........  ...+|...|.+++|+|
T Consensus       152 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~  227 (401)
T 4aez_A          152 GLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG--TLQGHSSEVCGLAWRS  227 (401)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE--EEECCSSCEEEEEECT
T ss_pred             ECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee--EEcCCCCCeeEEEEcC
Confidence            445667888888777777788899999999999  467999999999999999984432222  2457888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEe--CCCeEEEEEC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGS--SDDCIYVYDL  256 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s--~dg~i~iwd~  256 (372)
                      ++++|++++.|+.|++||++++.......                +|...|.+++|+|++ .++++++  .|+.|++||+
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----------------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~  291 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKT----------------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA  291 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEEC----------------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEec----------------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence            99999999999999999999876543322                466799999999976 4566655  6999999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeEEEEeccc--------ccCCCCCeeEEEeccCCCeEEEEee
Q 017421          257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVNSVLL--------LTRSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i~vwd~~~--------~~~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      .+++.+..+. +...|.+++|+ +++++|++++  .||.|++||++.        +..|...|.+++|+|+|++|++++ 
T Consensus       292 ~~~~~~~~~~-~~~~v~~~~~s-~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~-  368 (401)
T 4aez_A          292 ATGARVNTVD-AGSQVTSLIWS-PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA-  368 (401)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEEC-SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC-
T ss_pred             CCCCEEEEEe-CCCcEEEEEEC-CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence            9999888886 66789999999 9999999854  899999999874        347889999999999999999886 


Q ss_pred             eeEEEeeceEEEeecccceEEEEEeee
Q 017421          327 LVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                           .|+.|++|++.+++.+.....+
T Consensus       369 -----~dg~i~iw~~~~~~~~~~~~~~  390 (401)
T 4aez_A          369 -----SDENLKFWRVYDGDHVKRPIPI  390 (401)
T ss_dssp             -----TTSEEEEEECCC----------
T ss_pred             -----CCCcEEEEECCCCccccccccc
Confidence                 6999999999999887765443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-28  Score=243.56  Aligned_cols=223  Identities=13%  Similarity=0.128  Sum_probs=187.5

Q ss_pred             ccCCceeEeeeeeC--CCCCccccCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLP--VNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.+..+.+|+...  ......+.+|.+.|++++|+|+  +++|++|+.||.|++||+.++... .......|...|.++
T Consensus        27 g~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v  105 (753)
T 3jro_A           27 CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSV  105 (753)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEE
T ss_pred             EECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEE
Confidence            45567888998873  3445567899999999999998  999999999999999999987522 223356788899999


Q ss_pred             EECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-------------CCC
Q 017421          176 SLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGR  240 (372)
Q Consensus       176 ~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-------------~~~  240 (372)
                      +|+|+  ++.+++++.||.|++||++++.........              +|...|.+++|+|             ++.
T Consensus       106 ~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~--------------~~~~~v~~l~~~p~~~~~~~~~~~~~d~~  171 (753)
T 3jro_A          106 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--------------AHAIGVNSASWAPATIEEDGEHNGTKESR  171 (753)
T ss_dssp             EECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE--------------CCSSCEEEEEECCCC---------CGGGC
T ss_pred             EECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee--------------cCCCceEEEEecCcccccccccccCCCCC
Confidence            99999  999999999999999999887543222211              4667999999999             589


Q ss_pred             EEEEEeCCCeEEEEECCCC----eEEEEeecCCCCeEEEEEeCCC---CCEEEEEeCCCeEEEEecccc-----------
Q 017421          241 ELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVNSVLLL-----------  302 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~---~~~l~s~~~dg~i~vwd~~~~-----------  302 (372)
                      +|++|+.||.|++||++++    .....+.+|...|++++|+ |+   +++|++++.||.|++||++..           
T Consensus       172 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~  250 (753)
T 3jro_A          172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE  250 (753)
T ss_dssp             CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS
T ss_pred             EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc
Confidence            9999999999999999876    5667788999999999999 77   899999999999999999753           


Q ss_pred             cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          303 TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       303 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      ..+...|++++|+|+|+++++++      .|+.|++|++.++
T Consensus       251 ~~~~~~v~~l~~spdg~~l~s~s------~Dg~I~vwd~~~~  286 (753)
T 3jro_A          251 EKFPDVLWRASWSLSGNVLALSG------GDNKVTLWKENLE  286 (753)
T ss_dssp             SCCSSCCCCEEECTTTCCEEEEC------SSSCEECCBCCSS
T ss_pred             CCCCCceEEEEEcCCCCEEEEEc------CCCEEEEEecCCC
Confidence            24778899999999999999886      6899999998753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=229.82  Aligned_cols=225  Identities=12%  Similarity=0.147  Sum_probs=170.9

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--------EEEeeecccCC------------cceEEEEECCC
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLR------------WTVTDTSLSPD  180 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~------------~~v~~~~~~~~  180 (372)
                      ..+.+.|.+++|+|+|++||+|+.||.|+||++.++..        ........+|.            ..|.+++|+|+
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            34678999999999999999999999999999987642        11122345676            77999999999


Q ss_pred             C--CEEEEEeCCCeEEEEECCCCceeeecceeecccc----------cce----------e----ccCCCCccccEEEEE
Q 017421          181 Q--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG----------LDF----------S----AADDGGYSFGIFSLK  234 (372)
Q Consensus       181 ~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------~~~----------~----~~~~~~h~~~i~~~~  234 (372)
                      +  ..|++++.|+.|++||+.++.............+          +.+          .    .....+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  7999999999999999976543211000000000          000          0    000136888999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CeEEEE-------eecCCCCeEEEEEeCCCC-CEEEEEeCCCeEEEEeccccc--
Q 017421          235 FSTDGRELVAGSSDDCIYVYDLEA-NKLSLR-------ILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVNSVLLLT--  303 (372)
Q Consensus       235 ~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~-------~~~~~~~v~~~~~sp~~~-~~l~s~~~dg~i~vwd~~~~~--  303 (372)
                      |+|++++|++| .|+.|++||+++ ++.+..       +.+|...|++++|+ |++ ++|++|+.||.|++||++...  
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            99999999998 799999999994 444442       45799999999999 777 999999999999999987422  


Q ss_pred             --------CCCC------------CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc-ceEEEEEeeeE
Q 017421          304 --------RSIN------------PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL-LRTFYSFMVHI  354 (372)
Q Consensus       304 --------~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~-~~~~~~~~~h~  354 (372)
                              .+..            .|.+++|+|+|++|++++       ++.|++||+.+ ++.+..+.+|.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------YLSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-------SSEEEEEETTCCSSCSCCEESCG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-------CCeEEEEeCCCCccccceeeccc
Confidence                    3443            899999999999999885       38899999987 88888888774

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-28  Score=227.25  Aligned_cols=233  Identities=12%  Similarity=0.068  Sum_probs=185.8

Q ss_pred             ccCCceeEeeeeeC---CCC--CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC---CCeEEEEe-------ee
Q 017421          100 SAADCCHMLSRYLP---VNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE---RGWKIQKD-------IL  164 (372)
Q Consensus       100 ~~~~~~~~~~~~~~---~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~-------~~  164 (372)
                      .+.|..+++|+...   ...  .....+|...|.+++|+|++++|++|+.||.|++||+.   .+......       ..
T Consensus        82 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~  161 (437)
T 3gre_A           82 GSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN  161 (437)
T ss_dssp             EETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             ecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEE
Confidence            55677888998866   321  12223699999999999999999999999999999995   33222211       11


Q ss_pred             ccc--CCcceEEEE--ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC
Q 017421          165 AKS--LRWTVTDTS--LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR  240 (372)
Q Consensus       165 ~~~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  240 (372)
                      ...  +...+.++.  +++++++|++++.|+.|++||+++++........              .|...|++++|+|+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~h~~~v~~~~~s~~~~  227 (437)
T 3gre_A          162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS--------------PRHGAVSSICIDEECC  227 (437)
T ss_dssp             GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC--------------GGGCCEEEEEECTTSC
T ss_pred             ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC--------------CCCCceEEEEECCCCC
Confidence            111  445567776  6688999999999999999999998764443310              1567999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEeC---CCCCEEEEEeCCCeEEEEeccccc-------------
Q 017421          241 ELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGD---ESGHLIYSGSDDNLCKVNSVLLLT-------------  303 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp---~~~~~l~s~~~dg~i~vwd~~~~~-------------  303 (372)
                      +|++|+.||.|++||+++++++..+. .|...|.+++|+|   +++.+|++++.||.|++||+++..             
T Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  307 (437)
T 3gre_A          228 VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPS  307 (437)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCC
T ss_pred             EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCc
Confidence            99999999999999999999988886 7888999997774   568899999999999999997321             


Q ss_pred             -------------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          304 -------------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       304 -------------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                                         .|...|++++|+ ++++|++++      .|+.|++||+.+++....+.+|
T Consensus       308 ~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          308 MEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE------ATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             GGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG------GGTEEEEEETTCGGGCEEEECC
T ss_pred             cceecccccccccceecccccCCceEEEEEC-CceEEEecC------CCCeEEEEECCCcccceEEecc
Confidence                               166678999999 778888886      6999999999999988888876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=1.1e-27  Score=250.63  Aligned_cols=212  Identities=21%  Similarity=0.204  Sum_probs=180.1

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+..   ..+|...|.+++|+|++++|++++.|+.|++|
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIW  684 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            345678999999999999999999999999999999999876665   55888899999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  274 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~  274 (372)
                      |+.+++......                +|...|.+++|+|  ++.++++|+.|+.|++||+.+++++..+.+|...|++
T Consensus       685 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          685 DSATGKLVHTYD----------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             ECCCCceEEEEc----------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence            999987654433                4777999999999  5568999999999999999999999999999999999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEeccccc---------------------------------------------------
Q 017421          275 VCFGDESGHLIYSGSDDNLCKVNSVLLLT---------------------------------------------------  303 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------------------------------------------------  303 (372)
                      ++|+ |++++|++++.||.|++||++...                                                   
T Consensus       749 ~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~  827 (1249)
T 3sfz_A          749 CRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH  827 (1249)
T ss_dssp             EEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred             EEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence            9999 899999999999999999986321                                                   


Q ss_pred             ----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          304 ----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       304 ----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                                .|...|.+++|+|++++++++.      .|+.|++|++.+++.+..+.+|.
T Consensus       828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------~dg~v~vwd~~~~~~~~~~~~h~  882 (1249)
T 3sfz_A          828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL------SQYCVELWNIDSRLKVADCRGHL  882 (1249)
T ss_dssp             TCCEEEEEECSSSSCCCEEEECSSTTEEEEEC------SSSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCceeEEcCCCCCceEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCceeeecCCCc
Confidence                      2334445555555555555443      35789999999999999888873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=2.8e-27  Score=217.49  Aligned_cols=227  Identities=16%  Similarity=0.147  Sum_probs=181.5

Q ss_pred             ccCCceeEeeeeeCCCCCcccc-------------CCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeec
Q 017421          100 SAADCCHMLSRYLPVNGPWPVD-------------QTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILA  165 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  165 (372)
                      .+.+..+.+|+.........+.             +|...|.+++|+| ++++|++++.||.|++||+.++......   
T Consensus        62 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---  138 (408)
T 4a11_B           62 GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF---  138 (408)
T ss_dssp             EETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred             EcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec---
Confidence            4556778899887766555443             5999999999999 7889999999999999999998665543   


Q ss_pred             ccCCcceEEEEECCC---CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-E
Q 017421          166 KSLRWTVTDTSLSPD---QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-E  241 (372)
Q Consensus       166 ~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~  241 (372)
                       .+...+.++.|+|.   +.++++++.++.|++||++++.......                +|...|.+++|+|+++ +
T Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l  201 (408)
T 4a11_B          139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ----------------GHRQEILAVSWSPRYDYI  201 (408)
T ss_dssp             -ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC----------------CCCSCEEEEEECSSCTTE
T ss_pred             -cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec----------------CCCCcEEEEEECCCCCcE
Confidence             24557899999984   4599999999999999999876543332                4667999999999998 5


Q ss_pred             EEEEeCCCeEEEEECCCCe-EEEEe---------------ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---
Q 017421          242 LVAGSSDDCIYVYDLEANK-LSLRI---------------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---  302 (372)
Q Consensus       242 l~s~s~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---  302 (372)
                      |++++.||.|++||++++. ++..+               ..|...|.+++|+ |++++|++++.||.|++||+++.   
T Consensus       202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSSNGENT  280 (408)
T ss_dssp             EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred             EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCCCEEEEecCCCeEEEEECCCCccc
Confidence            8999999999999998765 44444               4688899999999 89999999999999999998631   


Q ss_pred             --------------------------------------------------cCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421          303 --------------------------------------------------TRSINPCNKYLFNPCNKYLIIYLILVISIY  332 (372)
Q Consensus       303 --------------------------------------------------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~  332 (372)
                                                                        ..|...|++++|+|++++|++++      .
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~  354 (408)
T 4a11_B          281 LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS------R  354 (408)
T ss_dssp             CCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE------T
T ss_pred             eeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC------C
Confidence                                                              24778999999999999999886      6


Q ss_pred             eceEEEeecccceEEEEEeee
Q 017421          333 SPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       333 d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      |+.|++|++.+++.+.....+
T Consensus       355 dg~i~iw~~~~~~~~~~~~~~  375 (408)
T 4a11_B          355 DCNILAWVPSLYEPVPDDDET  375 (408)
T ss_dssp             TSCEEEEEECC----------
T ss_pred             CCeEEEEeCCCCCccCCCCce
Confidence            999999999999887765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=1.5e-27  Score=223.88  Aligned_cols=236  Identities=14%  Similarity=0.132  Sum_probs=190.1

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC-
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-  178 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-  178 (372)
                      .+.+..+.+|+.........+.+|.+.|.+++|+|++ .|++|+.||+|++||+.++..+..   ..+|...|.+++|+ 
T Consensus       138 gs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~  213 (464)
T 3v7d_B          138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVE  213 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCCccEEEEEec
Confidence            5667788999988777777888999999999999988 899999999999999999876654   55788899999998 


Q ss_pred             -CCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccccee-------ccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          179 -PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS-------AADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       179 -~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                       ++++++++++.|+.|++||+.++..................       .....+|...+.++  +++++++++++.|+.
T Consensus       214 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~  291 (464)
T 3v7d_B          214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT  291 (464)
T ss_dssp             SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred             CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence             57889999999999999999887643221111000000000       00113577788777  577899999999999


Q ss_pred             EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEE
Q 017421          251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      |++||+++++++..+.+|...|.+++|+ +++++|++|+.||.|++||++      ++..|...|.++.|+  +.+|+++
T Consensus       292 i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          292 LIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            9999999999999999999999999999 999999999999999999987      345889999999997  4677777


Q ss_pred             eeeeEEEeeceEEEeecccceEEEEE
Q 017421          325 LILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       325 ~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +      .|+.|++||+.+++....+
T Consensus       369 s------~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          369 A------ADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             E------TTSEEEEEETTTCCEEEEE
T ss_pred             e------CCCcEEEEECCCCceeeee
Confidence            5      6889999999887655444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=1.3e-27  Score=231.55  Aligned_cols=234  Identities=12%  Similarity=0.027  Sum_probs=195.7

Q ss_pred             cCCCCcc--ccCCceeEeeeeeCC----CCCccccCCCCc-eEEEEECC--CCCEEEEEeCCCcEEEEeCCCC------e
Q 017421           93 YSGRGRF--SAADCCHMLSRYLPV----NGPWPVDQTTSR-AYVSQFSA--DGSLFVAGFQASQIRIYDVERG------W  157 (372)
Q Consensus        93 ~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~-v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~------~  157 (372)
                      +++++.+  .+.+..+.+|+....    .....+.+|... |.+++|+|  ++++|++++.||.|+|||+.++      .
T Consensus        26 ~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~  105 (615)
T 1pgu_A           26 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE  105 (615)
T ss_dssp             EETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE
T ss_pred             ECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc
Confidence            3444432  344667888888766    667788999999 99999999  9999999999999999999754      1


Q ss_pred             EEEEeeecccCCcceEEEEECCCCCEEEEEeCC----CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEE
Q 017421          158 KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL  233 (372)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  233 (372)
                      .. .......|...|.+++|+|++++|++++.+    +.|++||  .++......                +|...|.++
T Consensus       106 ~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~----------------~~~~~v~~~  166 (615)
T 1pgu_A          106 VN-VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS----------------GHSQRINAC  166 (615)
T ss_dssp             EE-EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC----------------SCSSCEEEE
T ss_pred             cc-ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee----------------cCCccEEEE
Confidence            11 122345677889999999999999999987    6888888  333322221                477799999


Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCC---CeEEEEEeCCC-CCEEEEEeCCCeEEEEeccc------c
Q 017421          234 KFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTS---DVNTVCFGDES-GHLIYSGSDDNLCKVNSVLL------L  302 (372)
Q Consensus       234 ~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~~-~~~l~s~~~dg~i~vwd~~~------~  302 (372)
                      +|+|+++ .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+ |+ +++|++++.|+.|++||+++      +
T Consensus       167 ~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          167 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            9999997 899999999999999999999999999999   99999999 78 99999999999999999863      3


Q ss_pred             -c---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          303 -T---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       303 -~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                       .   .|...|.+++|+ ++++|++++      .|+.|++||+.+++.+..+..|
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVG------ADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEE------TTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEc------CCCcEEEEECCCCcEEEEEcCC
Confidence             3   788999999999 999999886      6899999999999998888766

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=5.6e-28  Score=217.21  Aligned_cols=223  Identities=12%  Similarity=0.048  Sum_probs=186.2

Q ss_pred             ccCCceeEeeeeeCCC---CCccccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeC-CCCeEEEEeeeccc--CCcce
Q 017421          100 SAADCCHMLSRYLPVN---GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV-ERGWKIQKDILAKS--LRWTV  172 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~--~~~~v  172 (372)
                      .+.+..+.+|+.....   ....+.+|...|.+++|+|+++ +|++|+.||.|++|++ .++..    .....  |...|
T Consensus        29 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v  104 (342)
T 1yfq_A           29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGI  104 (342)
T ss_dssp             EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCE
T ss_pred             EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCce
Confidence            4566788899887765   2455668999999999999999 9999999999999999 87743    22456  88899


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCC---------CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE
Q 017421          173 TDTSLSPDQRHLVYASMSPIVHIVDVGS---------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  243 (372)
Q Consensus       173 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~  243 (372)
                      .+++|+| ++.|++++.|+.|++||+++         ++.....                 .|...|.+++|+|++  ++
T Consensus       105 ~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~--l~  164 (342)
T 1yfq_A          105 CRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-----------------KVKNKIFTMDTNSSR--LI  164 (342)
T ss_dssp             EEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-----------------SSCCCEEEEEECSSE--EE
T ss_pred             EEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-----------------eeCCceEEEEecCCc--EE
Confidence            9999999 99999999999999999876         3322211                 144589999999987  99


Q ss_pred             EEeCCCeEEEEECCC-Ce--EEEEeecCCCCeEEEEEeCC-CCCEEEEEeCCCeEEEEecccc------------cCCCC
Q 017421          244 AGSSDDCIYVYDLEA-NK--LSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVNSVLLL------------TRSIN  307 (372)
Q Consensus       244 s~s~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~sp~-~~~~l~s~~~dg~i~vwd~~~~------------~~~~~  307 (372)
                      +++.|+.|++||+++ +.  .......|...|.+++|+ | ++++|++++.||.|++|+++..            ..|..
T Consensus       165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T 1yfq_A          165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             EEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccc
Confidence            999999999999998 54  333445688899999999 8 9999999999999999998643            24433


Q ss_pred             ---------CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          308 ---------PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       308 ---------~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                               .|.+++|+|++++|++++      .|+.|++||+.+++.+..+.+|
T Consensus       244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          244 NLKDTNLAYPVNSIEFSPRHKFLYTAG------SDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEE------TTSCEEEEETTTTEEEEECCCC
T ss_pred             cccccccceeEEEEEEcCCCCEEEEec------CCceEEEEcCccHhHhhhhhcc
Confidence                     899999999999999886      6899999999999999988887

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9e-29  Score=234.58  Aligned_cols=219  Identities=7%  Similarity=0.007  Sum_probs=174.7

Q ss_pred             ccCCceeEeeeeeCCCC-----------CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccC
Q 017421          100 SAADCCHMLSRYLPVNG-----------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL  168 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  168 (372)
                      .+.|..+++|+......           ...+.+|...|++++|++++ .|++|+.||+|++||+.++....  .....|
T Consensus       231 ~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~--~~~~~H  307 (524)
T 2j04_B          231 VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPS--FYDQVH  307 (524)
T ss_dssp             EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCS--EEEECS
T ss_pred             EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCce--EEeecc
Confidence            55677889998764421           23567899999999999864 79999999999999998763221  124578


Q ss_pred             CcceEEE--EECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcc--ccEEEEEEcCCCCEEE
Q 017421          169 RWTVTDT--SLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS--FGIFSLKFSTDGRELV  243 (372)
Q Consensus       169 ~~~v~~~--~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~sp~~~~l~  243 (372)
                      ...|.++  .|+|++ .+|++++.|++|++||+++++......                +|.  ..|.+++|+|+++.++
T Consensus       308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~----------------~~~~~~~v~~v~fsp~~~~l~  371 (524)
T 2j04_B          308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV----------------SRFRGSNLVPVVYCPQIYSYI  371 (524)
T ss_dssp             SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE----------------EECSCCSCCCEEEETTTTEEE
T ss_pred             cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc----------------cccccCcccceEeCCCcCeEE
Confidence            8899999  578887 899999999999999998776432221                121  2478899999999999


Q ss_pred             EEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----------------------
Q 017421          244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----------------------  301 (372)
Q Consensus       244 s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----------------------  301 (372)
                      +++.|++|++||++++.++.++.+|...|++++|+ |++++|++|+.|++|++||+..                      
T Consensus       372 s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S-p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~  450 (524)
T 2j04_B          372 YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS-RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWD  450 (524)
T ss_dssp             EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC-SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECB
T ss_pred             EeCCCCcEEEEECcccccceeeecCCCceEEEEeC-CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEec
Confidence            99999999999999998888889999999999999 8999999999999999987420                      


Q ss_pred             ----------------------------ccCCCCCeeEEEeccCCC---eEEEEeeeeEEEeeceEEEeecccc
Q 017421          302 ----------------------------LTRSINPCNKYLFNPCNK---YLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       302 ----------------------------~~~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                                                  +.+|...|.+++|+|++.   .+++++      .|+.|+||++.-.
T Consensus       451 ~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~------~~g~vrlw~l~~~  518 (524)
T 2j04_B          451 YSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN------SAGLLTLEYLSLE  518 (524)
T ss_dssp             CCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC------TTSEEEEEECSCC
T ss_pred             cCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc------cCceEEEEEcccc
Confidence                                        013556788899999854   788776      5788999987543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.7e-28  Score=245.06  Aligned_cols=199  Identities=12%  Similarity=0.083  Sum_probs=167.9

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      .+|...|++++|+|++++||+|+.||.|+||+........    ...|..+|.+++|+| +++|++++.|+.|++||+.+
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            4789999999999999999999999999999998765433    234677899999999 88999999999999999998


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-----------EEeecCC
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRILAHT  269 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~~~  269 (372)
                      ++......                 |...|++++|+|++++|++|+.||.|++||+++++..           ..+.+|.
T Consensus        89 ~~~~~~~~-----------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           89 QKVLTTVF-----------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             CSEEEEEE-----------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             CcEEEEEc-----------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            87643332                 2348999999999999999999999999999988753           1235688


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cC------------------CCCCeeEEEeccCCCeEEEEe
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TR------------------SINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~------------------~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      ..|++++|+|.++..|++|+.|+.| +||++..      ..                  |...|++++|+|+|++|++++
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence            9999999994456899999999999 9998732      12                  246799999999999999986


Q ss_pred             eeeEEEeeceEEEeecccceEEE
Q 017421          326 ILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       326 ~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                            .|+.|++||+.+++.+.
T Consensus       231 ------~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          231 ------EDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             ------TTCCEEEEETTTCCEEE
T ss_pred             ------CCCeEEEEECCCCcEEE
Confidence                  68999999998887654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1.5e-27  Score=216.15  Aligned_cols=202  Identities=15%  Similarity=0.105  Sum_probs=169.5

Q ss_pred             ccCCCCceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeEEEEeee--cccCCcceEEEEECCC----CCEEEEEeC
Q 017421          120 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPD----QRHLVYASM  189 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~----~~~l~~~~~  189 (372)
                      ..+|...|++++|+|+    ...+++++.++.|++|++.++..+.....  ...|...|.+++|+|+    +++|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            3579999999999984    55667777778999999997755443322  2236678999999998    679999999


Q ss_pred             CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEe---
Q 017421          190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI---  265 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~---  265 (372)
                      ||.|++||+.+++......                +|...|.+++|+| ++++|++++.||.|++||+++++.+..+   
T Consensus        94 dg~i~v~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYV----------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEE----------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred             CCEEEEEEchhceEeeeec----------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence            9999999999887644332                4677999999999 8999999999999999999999998888   


Q ss_pred             ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------------------------------CCCCCeeE
Q 017421          266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------------------------------RSINPCNK  311 (372)
Q Consensus       266 ~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------------------------------~~~~~v~~  311 (372)
                      ..|...|.+++|+ |++++|++++.||.|++||++...                                  .|...|.+
T Consensus       158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  236 (366)
T 3k26_A          158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC  236 (366)
T ss_dssp             TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred             ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence            6899999999999 899999999999999999997321                                  18899999


Q ss_pred             EEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          312 YLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      ++|+  ++++++++      .|+.|++||+.+++.
T Consensus       237 ~~~~--~~~l~~~~------~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          237 VRWL--GDLILSKS------CENAIVCWKPGKMED  263 (366)
T ss_dssp             EEEE--TTEEEEEC------SSSEEEEEEESSTTC
T ss_pred             EEEc--CCEEEEEe------cCCEEEEEeCCCccc
Confidence            9999  67888776      589999999887643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=1.1e-27  Score=216.27  Aligned_cols=219  Identities=12%  Similarity=0.071  Sum_probs=176.8

Q ss_pred             CceeEeeeeeCCCCCcc-ccCCCCceEEEEECCC---CCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEE-
Q 017421          103 DCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTS-  176 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~-  176 (372)
                      +..+.+|+......... ..+|...|.+++|+|+   +++|++|+.||.|++||+.++. .+..   ..+|...|.++. 
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~  119 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS---VKGHKEIINAIDG  119 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE---ECCCSSCEEEEEE
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE---EEecccceEEEee
Confidence            67788898876554333 3479999999999998   6999999999999999999875 3333   557888899995 


Q ss_pred             -----ECCCCCEEEEEeCCCeEEEEECCCCc-eeeecceeecccccceeccCCCCccccEEEEE----EcCCCCEEEEEe
Q 017421          177 -----LSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLK----FSTDGRELVAGS  246 (372)
Q Consensus       177 -----~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~----~sp~~~~l~s~s  246 (372)
                           |+|++++|++++.||.|++||++++. ..........            .+...+.+++    |+|++++|++++
T Consensus       120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~l~~~~  187 (357)
T 3i2n_A          120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG------------ENKRDCWTVAFGNAYNQEERVVCAGY  187 (357)
T ss_dssp             ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT------------SCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred             ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC------------CCCCceEEEEEEeccCCCCCEEEEEc
Confidence                 57899999999999999999999876 2222211110            1234788888    788999999999


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC---CCCEEEEEeCCCeEEEEecccc------c-----CCCCCeeEE
Q 017421          247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE---SGHLIYSGSDDNLCKVNSVLLL------T-----RSINPCNKY  312 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~l~s~~~dg~i~vwd~~~~------~-----~~~~~v~~~  312 (372)
                      .|+.|++||+++++.... ..|...|.+++|+ |   ++.+|++++.||.|++||++..      .     .|...|+++
T Consensus       188 ~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  265 (357)
T 3i2n_A          188 DNGDIKLFDLRNMALRWE-TNIKNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQV  265 (357)
T ss_dssp             TTSEEEEEETTTTEEEEE-EECSSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEE
T ss_pred             cCCeEEEEECccCceeee-cCCCCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEE
Confidence            999999999999987544 5688999999999 7   8999999999999999998732      2     788999999


Q ss_pred             EeccCCC-eEEEEeeeeEEEeeceEEEeecccc
Q 017421          313 LFNPCNK-YLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       313 ~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +|+|+++ ++++++      .|+.|++||+.++
T Consensus       266 ~~~~~~~~~l~~~~------~dg~i~iwd~~~~  292 (357)
T 3i2n_A          266 RHLPQNRELFLTAG------GAGGLHLWKYEYP  292 (357)
T ss_dssp             EEETTEEEEEEEEE------TTSEEEEEEEECC
T ss_pred             EECCCCCcEEEEEe------CCCcEEEeecCCC
Confidence            9999998 677775      6899999998864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-27  Score=210.91  Aligned_cols=224  Identities=11%  Similarity=0.014  Sum_probs=185.8

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+.........+..|...|.+++|+|++++|++++.||.|++|++..............|...|.++.|  
T Consensus        35 ~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--  112 (313)
T 3odt_A           35 VSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--  112 (313)
T ss_dssp             EETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--
T ss_pred             EEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--
Confidence            556677889998777667778899999999999999999999999999999998765322223335678889999999  


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      +++++++++.||.|++||  .+.......                +|...+.++.|+| +++++++++.|+.|++||  .
T Consensus       113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~  172 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWK--EGSLVYNLQ----------------AHNASVWDAKVVSFSENKFLTASADKTIKLWQ--N  172 (313)
T ss_dssp             ETTEEEEEETTSEEEEEE--TTEEEEEEE----------------CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--T
T ss_pred             cCCEEEEEeCCCCEEEEc--CCcEEEecc----------------cCCCceeEEEEccCCCCEEEEEECCCCEEEEe--c
Confidence            678999999999999999  333322221                3667999999988 899999999999999999  4


Q ss_pred             CeEEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          259 NKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       259 ~~~~~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      .+....+.. |...+.+++|+ +++. +++++.|+.|++||+++      +..|...|++++|+|++. |++++      
T Consensus       173 ~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~------  243 (313)
T 3odt_A          173 DKVIKTFSGIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG------  243 (313)
T ss_dssp             TEEEEEECSSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEE------
T ss_pred             CceEEEEeccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEe------
Confidence            566667776 89999999999 8887 99999999999999973      347889999999999995 55554      


Q ss_pred             eeceEEEeecccceEEEEEeeeE
Q 017421          332 YSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      .|+.|++||+.+++.+..+..|.
T Consensus       244 ~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          244 EDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             TTSEEEEECTTTCCEEEEEECSS
T ss_pred             cCCEEEEEECCCCceeEEEeccC
Confidence            68999999999999998887774

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-27  Score=221.97  Aligned_cols=212  Identities=12%  Similarity=0.071  Sum_probs=171.9

Q ss_pred             cCCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCC--CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          121 DQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      .+|.+.|++++|+|++++| ++++.||.|+||++.  ++..+.... ...+...|.+++|+|++++|++++.+|.|++|+
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            3566789999999999996 889999999999998  665554422 235566899999999999999999999999999


Q ss_pred             CCCCceee-ecceeecccccceeccCCCCccccEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCe
Q 017421          198 VGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDV  272 (372)
Q Consensus       198 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v  272 (372)
                      +.++.... ......             +|...|++++|+|+   +++|++++.|+.|++||+++++.+.. +.+|...|
T Consensus       178 ~~~~~~~~~~~~~~~-------------~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v  244 (450)
T 2vdu_B          178 INSIPEEKFTQEPIL-------------GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFV  244 (450)
T ss_dssp             TTSCCCSSCCCCCSE-------------ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCE
T ss_pred             cCCcccccccceeee-------------cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCce
Confidence            98876532 111111             46679999999999   99999999999999999999988777 55899999


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------------------------------CCCCCeeEEEeccCCCeE
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------------------------------RSINPCNKYLFNPCNKYL  321 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------------------------------~~~~~v~~~~~s~~g~~l  321 (372)
                      .+++|+  ++++|++++.|+.|++||+++.+                               .....|..++|+|++++|
T Consensus       245 ~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          245 SSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             EEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            999998  89999999999999999987432                               123568999999999999


Q ss_pred             EEEeeeeEEEeeceEEEeec--ccc---eEEEEEeee
Q 017421          322 IIYLILVISIYSPNILLDNY--FLL---RTFYSFMVH  353 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~--~~~---~~~~~~~~h  353 (372)
                      +++..     .|+.|++|++  .++   +.+..+.+|
T Consensus       323 ~~~~~-----~d~~i~iw~~~~~~~~~l~~~~~~~~~  354 (450)
T 2vdu_B          323 AFFVE-----ATKCIIILEMSEKQKGDLALKQIITFP  354 (450)
T ss_dssp             EEEET-----TCSEEEEEEECSSSTTCEEEEEEEECS
T ss_pred             EEEEC-----CCCeEEEEEeccCCCCceeeccEeccC
Confidence            98842     3788999998  555   555555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.6e-27  Score=208.35  Aligned_cols=210  Identities=13%  Similarity=0.083  Sum_probs=177.6

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ...+.+|.+.|.+++| |++++|++++.||.|++||+.++.....   ...|...|.+++|+|++++|++++.||.|++|
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV---VYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE---EEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE---eecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            3457889999999999 9999999999999999999988765544   44667789999999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      ++.............             +|...|.+++|  +++++++++.|+.|++||  .++....+..|...+.+++
T Consensus        87 ~~~~~~~~~~~~~~~-------------~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~  149 (313)
T 3odt_A           87 PLFATSGEDPLYTLI-------------GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK  149 (313)
T ss_dssp             ETTCCTTSCC-CEEC-------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred             EeeecCCCCcccchh-------------hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence            997654222111111             46779999999  577999999999999999  6778888889999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccc----ccC-CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLL----LTR-SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~----~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      |+|++++++++++.|+.|++||...    +.. +...+.+++|+|++. +++++      .|+.|++||+.+++.+..+.
T Consensus       150 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~------~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          150 VVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS------NDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEE------TTSEEEEEETTTCCEEEEEE
T ss_pred             EccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEcc------CCCeEEEEECCchhhhhhhh
Confidence            9966999999999999999999752    233 888999999999999 55554      68999999999999999888


Q ss_pred             eeE
Q 017421          352 VHI  354 (372)
Q Consensus       352 ~h~  354 (372)
                      +|.
T Consensus       223 ~~~  225 (313)
T 3odt_A          223 GHE  225 (313)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            773

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=2.5e-27  Score=247.89  Aligned_cols=213  Identities=15%  Similarity=0.160  Sum_probs=181.6

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR  169 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  169 (372)
                      +++++.+   .+.+..+.+|+.........+.+|...|.+++|+|++++|++++.|+.|+|||+.++..+..   ..+|.
T Consensus       623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~---~~~~~  699 (1249)
T 3sfz_A          623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT---YDEHS  699 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECCS
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE---EcCCC
Confidence            4555543   45667888999888887888899999999999999999999999999999999999877665   45788


Q ss_pred             cceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          170 WTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       170 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                      ..|.++.|+|  ++..+++++.|+.|++||+.++.......                +|...|++++|+|++++|++++.
T Consensus       700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----------------~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF----------------GHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC----------------CCSSCEEEEEECSSTTEEEEEES
T ss_pred             CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec----------------CCCCCEEEEEEecCCCEEEEEEC
Confidence            8999999999  55689999999999999999987644332                57789999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEee-------------------------------------------------------cCCCCe
Q 017421          248 DDCIYVYDLEANKLSLRIL-------------------------------------------------------AHTSDV  272 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~-------------------------------------------------------~~~~~v  272 (372)
                      ||.|++||+.+++....+.                                                       +|...|
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            9999999998775443321                                                       567788


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEe
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .+++|+ |+++++++++.|+.|++||+.+      +.+|...|.+++|+|+|+++++++
T Consensus       844 ~~~~~s-p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s  901 (1249)
T 3sfz_A          844 QYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS  901 (1249)
T ss_dssp             CEEEEC-SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEc-CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence            999999 8999999999999999999873      457889999999999999888775

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-27  Score=237.46  Aligned_cols=207  Identities=17%  Similarity=0.117  Sum_probs=172.0

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC--CCEEEEEeCCCeEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHI  195 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~v  195 (372)
                      ..+.+|.+.|++++|+|++++|++|+.||.|+||++..+.. .......+|..+|++++|+|+  +++|++++.||.|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            35689999999999999999999999999999999985432 222336688889999999998  999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCC
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSD  271 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~  271 (372)
                      ||+.++.........              +|...|.+++|+|+  ++++++|+.||.|++||++++  .....+.+|...
T Consensus        82 wd~~~~~~~~~~~~~--------------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           82 WKEENGRWSQIAVHA--------------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             EEEETTEEEEEEEEC--------------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             EECCCCccccccccc--------------CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence            999987632222211              47779999999999  999999999999999999887  344566789999


Q ss_pred             eEEEEEeCC------------CCCEEEEEeCCCeEEEEeccc----------ccCCCCCeeEEEeccC---CCeEEEEee
Q 017421          272 VNTVCFGDE------------SGHLIYSGSDDNLCKVNSVLL----------LTRSINPCNKYLFNPC---NKYLIIYLI  326 (372)
Q Consensus       272 v~~~~~sp~------------~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~v~~~~~s~~---g~~l~~~~~  326 (372)
                      |.+++|+|.            ++.+|++|+.||.|++||++.          +..|...|++++|+|+   ++++++++ 
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s-  226 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS-  226 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE-
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe-
Confidence            999999932            689999999999999999863          3478899999999999   89998886 


Q ss_pred             eeEEEeeceEEEeecccce
Q 017421          327 LVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~~~~  345 (372)
                           .|+.|++||+.+++
T Consensus       227 -----~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          227 -----QDRTCIIWTQDNEQ  240 (753)
T ss_dssp             -----SSSCEEEEEESSSS
T ss_pred             -----cCCEEEEecCCCCC
Confidence                 68999999998863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=3.8e-27  Score=221.15  Aligned_cols=222  Identities=13%  Similarity=0.102  Sum_probs=188.4

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEEC--CCCCEEEEEeCCCcEEEEeCCCCeEEEE----------------
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFS--ADGSLFVAGFQASQIRIYDVERGWKIQK----------------  161 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------  161 (372)
                      .+.|..+.+|+.........+.+|...|.+++|+  +++++|++|+.|+.|++||+.++.....                
T Consensus       179 ~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  258 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred             EeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence            5666788899988777777888999999999998  5789999999999999999987643221                


Q ss_pred             ----eeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC
Q 017421          162 ----DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST  237 (372)
Q Consensus       162 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  237 (372)
                          .....+|...+.++  +++++++++++.||.|++||+.+++......                +|...|.+++|+|
T Consensus       259 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~----------------~~~~~v~~~~~~~  320 (464)
T 3v7d_B          259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS----------------GHTDRIYSTIYDH  320 (464)
T ss_dssp             CTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEEET
T ss_pred             CeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec----------------CCCCCEEEEEEcC
Confidence                22345676677766  5788999999999999999999887644332                4677999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEE
Q 017421          238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKY  312 (372)
Q Consensus       238 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~  312 (372)
                      +++++++|+.||.|++||+++++++..+.+|...|.+++|+   +.+|++++.||.|++||++...     .+...+..+
T Consensus       321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  397 (464)
T 3v7d_B          321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT  397 (464)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEE
Confidence            99999999999999999999999999999999999999997   4799999999999999998533     466678889


Q ss_pred             EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      +|+|+++++++++       |+.|++||+.+++.+..
T Consensus       398 ~~~~~~~~l~~~~-------dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          398 TFYVSDNILVSGS-------ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEEECSSEEEEEE-------TTEEEEEETTTCCEEES
T ss_pred             EEEeCCCEEEEec-------CCeEEEEECCCCcEEeh
Confidence            9999999999883       78899999999988764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=7.3e-28  Score=216.45  Aligned_cols=206  Identities=13%  Similarity=0.085  Sum_probs=174.2

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC-EEEEEeCCCeEEEEEC
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV  198 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~  198 (372)
                      ..+|.+.|.+++|+|++++|++++.|+.|+||++.++...........|...|.+++|+|+++ +|++++.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            357999999999999999999999999999999987752112222447788999999999999 9999999999999999


Q ss_pred             -CCCceeeecceeecccccceeccCCCC--ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeEEEEee
Q 017421          199 -GSGTMESLANVTEIHDGLDFSAADDGG--YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRIL  266 (372)
Q Consensus       199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~  266 (372)
                       .++......                 +  |...|.+++|+| +++|++++.|+.|++||+++         ++++..+.
T Consensus        87 ~~~~~~~~~~-----------------~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           87 IGSPSFQALT-----------------NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             SSSSSEEECB-----------------SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             ccCCceEecc-----------------ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence             877542111                 3  667999999999 99999999999999999987         66666665


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-cc--------CCCCCeeEEEecc-CCCeEEEEeeeeEEEeeceE
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-LT--------RSINPCNKYLFNP-CNKYLIIYLILVISIYSPNI  336 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-~~--------~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~d~~i  336 (372)
                       |...|.+++|+ +++  +++++.|+.|++||++. ..        .+...+.+++|+| +++++++++      .|+.+
T Consensus       149 -~~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~------~dg~i  218 (342)
T 1yfq_A          149 -VKNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS------IDGRV  218 (342)
T ss_dssp             -SCCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE------TTSEE
T ss_pred             -eCCceEEEEec-CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe------cCCcE
Confidence             88999999999 666  99999999999999986 32        4677899999999 999999886      58999


Q ss_pred             EEeecccc------eEEEEEeee
Q 017421          337 LLDNYFLL------RTFYSFMVH  353 (372)
Q Consensus       337 ~lw~~~~~------~~~~~~~~h  353 (372)
                      ++|++...      +....+..|
T Consensus       219 ~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          219 AVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECC
T ss_pred             EEEEEcCCCcccccccceeeecc
Confidence            99999887      677777776

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-27  Score=214.70  Aligned_cols=216  Identities=10%  Similarity=0.051  Sum_probs=168.5

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC---------CeEEEEeeecccCCc
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---------GWKIQKDILAKSLRW  170 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~  170 (372)
                      .+.|..+.+|+.........+.  ...|.++.|+|+   +++++.|++|++|+...         +..+..  ...+|..
T Consensus        54 g~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~  126 (343)
T 3lrv_A           54 RCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE--IEVDSAN  126 (343)
T ss_dssp             EEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE--EECCCSS
T ss_pred             ECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE--eecCCCC
Confidence            5567788899887766554444  466778889988   99999999999997763         322222  1235567


Q ss_pred             ceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421          171 TVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  248 (372)
Q Consensus       171 ~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d  248 (372)
                      +|.+++|+|  +++++++++.||.|++||+++++.......               .|...+.+++|+|++.+|++|+.|
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---------------~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---------------KSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------CSSCCCCEEEECTTSCEEEEECTT
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------CCCCceEEEEECCCCCEEEEEcCC
Confidence            899999999  999999999999999999998876332211               234479999999999999999999


Q ss_pred             CeEEEEECCCCeEE-EEeec-CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccccC---------CCCCee--EEEec
Q 017421          249 DCIYVYDLEANKLS-LRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTR---------SINPCN--KYLFN  315 (372)
Q Consensus       249 g~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~---------~~~~v~--~~~~s  315 (372)
                      |.|++||+++++.+ ..+.. |..+|++++|+ |++.+|++++ |+.|++||++....         +...+.  +++|+
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs-~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFA-DNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID  269 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEEC-TTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEe-CCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence            99999999999877 77887 99999999999 9999999999 55999999985431         223444  59999


Q ss_pred             cCCCeEEEEeeeeEEEe-eceEEEeecccce
Q 017421          316 PCNKYLIIYLILVISIY-SPNILLDNYFLLR  345 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~  345 (372)
                      |+|++|++++      - |+.+++|++....
T Consensus       270 ~~g~~l~~~s------~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          270 DSGKNMIAYS------NESNSLTIYKFDKKT  294 (343)
T ss_dssp             TTSSEEEEEE------TTTTEEEEEEECTTT
T ss_pred             CCCCEEEEec------CCCCcEEEEEEcccc
Confidence            9999999875      3 6777888775543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=4.4e-27  Score=216.77  Aligned_cols=222  Identities=13%  Similarity=0.101  Sum_probs=179.8

Q ss_pred             ccCCceeEeeeeeCC-------CCCccccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcc
Q 017421          100 SAADCCHMLSRYLPV-------NGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT  171 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  171 (372)
                      .+.|..+.+|+....       .....+.+|...|.+++|+|++ ++|++++.|+.|+|||+.++..+.... ...|...
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~  178 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-PDVHPDT  178 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-TTTCCSC
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-cCCCCCc
Confidence            455677889998776       4456778999999999999998 699999999999999999986655421 1568889


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcccc-EEEEEEcCCCCEEEEE---eC
Q 017421          172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG-IFSLKFSTDGRELVAG---SS  247 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~sp~~~~l~s~---s~  247 (372)
                      |.+++|+|++++|++++.||.|++||+++++......  .             +|... +.++.|+|++++|++|   +.
T Consensus       179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~l~~g~~~~~  243 (402)
T 2aq5_A          179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--R-------------PHEGTRPVHAVFVSEGKILTTGFSRMS  243 (402)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--C-------------SSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred             eEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--c-------------CCCCCcceEEEEcCCCcEEEEeccCCC
Confidence            9999999999999999999999999999887643331  1             23333 8899999999999999   78


Q ss_pred             CCeEEEEECCCCeE-EEEee-cCCCCeEEEEEeCCCCCEEEE-EeCCCeEEEEeccccc---------CCCCCeeEEEec
Q 017421          248 DDCIYVYDLEANKL-SLRIL-AHTSDVNTVCFGDESGHLIYS-GSDDNLCKVNSVLLLT---------RSINPCNKYLFN  315 (372)
Q Consensus       248 dg~i~iwd~~~~~~-~~~~~-~~~~~v~~~~~sp~~~~~l~s-~~~dg~i~vwd~~~~~---------~~~~~v~~~~~s  315 (372)
                      |+.|++||+++++. +.... .|...+.+++|+ |++++|++ ++.|+.|++||+....         .+..+|.+++|+
T Consensus       244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s  322 (402)
T 2aq5_A          244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD-PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM  322 (402)
T ss_dssp             CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE-TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC
T ss_pred             CceEEEEcCccccCCceEEeccCCCceeEEEEc-CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe
Confidence            99999999998654 33332 477889999999 88988865 5579999999997432         245889999999


Q ss_pred             cCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          316 PCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      |++.+++++        +..+++|++.+++.
T Consensus       323 p~~~~~~s~--------~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          323 PKRGLEVNK--------CEIARFYKLHERKC  345 (402)
T ss_dssp             CGGGSCGGG--------TEEEEEEEEETTEE
T ss_pred             cccccceec--------ceeEEEEEcCCCcE
Confidence            999988754        55789999988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.6e-26  Score=215.39  Aligned_cols=222  Identities=18%  Similarity=0.202  Sum_probs=190.0

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+.........+.+|...|.+++|  ++++|++|+.||.|++||+.+++.+..   ...|...|.++.|++
T Consensus       149 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~  223 (435)
T 1p22_A          149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT---LIHHCEAVLHLRFNN  223 (435)
T ss_dssp             EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE---ECCCCSCEEEEECCT
T ss_pred             EeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE---EcCCCCcEEEEEEcC
Confidence            556778889998877777888999999999999  789999999999999999999876655   557888999999974


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                        ..+++++.||.|++||+.++..........             +|...|.+++|  ++++|++|+.||.|++||++++
T Consensus       224 --~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~  286 (435)
T 1p22_A          224 --GMMVTCSKDRSIAVWDMASPTDITLRRVLV-------------GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC  286 (435)
T ss_dssp             --TEEEEEETTSCEEEEECSSSSCCEEEEEEC-------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred             --CEEEEeeCCCcEEEEeCCCCCCceeeeEec-------------CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence              599999999999999998876542222221             47779999999  6789999999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      +.+..+.+|...|.+++|+   ++++++|+.||.|++||+++      +..|...|.+++|  ++.+|++++      .|
T Consensus       287 ~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~------~d  355 (435)
T 1p22_A          287 EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA------YD  355 (435)
T ss_dssp             CEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE------TT
T ss_pred             cEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe------CC
Confidence            9999999999999999995   57999999999999999973      4478899999999  778888886      69


Q ss_pred             ceEEEeecccce---------EEEEEeeeE
Q 017421          334 PNILLDNYFLLR---------TFYSFMVHI  354 (372)
Q Consensus       334 ~~i~lw~~~~~~---------~~~~~~~h~  354 (372)
                      +.|++||+.+++         .+..+.+|.
T Consensus       356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~  385 (435)
T 1p22_A          356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHS  385 (435)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCS
T ss_pred             CcEEEEECCCCCCccccccchheeeccCCC
Confidence            999999998887         777777763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=2.3e-27  Score=220.66  Aligned_cols=208  Identities=15%  Similarity=0.170  Sum_probs=167.7

Q ss_pred             cccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-------eEEEEeeecccCCcceEEEEECCCCC-EEEEEeC
Q 017421          119 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASM  189 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  189 (372)
                      ....|.+.|++++|+|+ +++|++++.+|.|+||++...       ..........+|...|.+++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            34679999999999997 788999999999999999761       01122223557888999999999988 9999999


Q ss_pred             CCeEEEEECCCCceeeec-ceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---eEEEE
Q 017421          190 SPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN---KLSLR  264 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~---~~~~~  264 (372)
                      ||.|++||+..+...... .....     +     .+|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~-----~-----~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNI-----F-----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEE-----E-----CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             CCeEEEEeCCCCCCCCceecccee-----e-----cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            999999999875321110 00000     0     14777999999999 6789999999999999999987   57777


Q ss_pred             eecCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCe-EEEEeeeeEEEeece
Q 017421          265 ILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKY-LIIYLILVISIYSPN  335 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~d~~  335 (372)
                      +..|...|++++|+ |++. +|++|+.||.|++||++.       +..|...|++++|+|+++. |++++      .|+.
T Consensus       273 ~~~~~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~------~d~~  345 (430)
T 2xyi_A          273 VDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG------TDRR  345 (430)
T ss_dssp             EECCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSC
T ss_pred             eecCCCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe------CCCc
Confidence            88899999999999 6665 799999999999999984       2368899999999999964 55554      6899


Q ss_pred             EEEeeccc
Q 017421          336 ILLDNYFL  343 (372)
Q Consensus       336 i~lw~~~~  343 (372)
                      |++||+..
T Consensus       346 i~iwd~~~  353 (430)
T 2xyi_A          346 LHVWDLSK  353 (430)
T ss_dssp             CEEEEGGG
T ss_pred             EEEEeCCC
Confidence            99999987

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.5e-27  Score=219.44  Aligned_cols=228  Identities=11%  Similarity=0.031  Sum_probs=157.2

Q ss_pred             ccCCceeEeeeeeCCCC-----CccccCCCCceEEEEECC--------CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc
Q 017421          100 SAADCCHMLSRYLPVNG-----PWPVDQTTSRAYVSQFSA--------DGSLFVAGFQASQIRIYDVERGWKIQKDILAK  166 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  166 (372)
                      .+.|..+++|+......     ...+.+|.+.|++++|+|        |+++||+|+.|++|+|||+.++..+..   ..
T Consensus       107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~---~~  183 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA---GY  183 (393)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE---EE
T ss_pred             EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee---ec
Confidence            56678899998776542     235789999999999998        889999999999999999988766554   44


Q ss_pred             cCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeecce-eecccccceec--------cCCCCccccEEEEEEc
Q 017421          167 SLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANV-TEIHDGLDFSA--------ADDGGYSFGIFSLKFS  236 (372)
Q Consensus       167 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~h~~~i~~~~~s  236 (372)
                      .|..+|.+++|+|++. +|++++.|+.|++||+++++....... ........+..        ....+|...+.++.|+
T Consensus       184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~  263 (393)
T 4gq1_A          184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI  263 (393)
T ss_dssp             ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred             CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence            6667899999999874 799999999999999998765322211 01111111111        1124678889999987


Q ss_pred             -CCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE------------------EEEeCC-CCCEEEEEeCCCeEEE
Q 017421          237 -TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT------------------VCFGDE-SGHLIYSGSDDNLCKV  296 (372)
Q Consensus       237 -p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~------------------~~~sp~-~~~~l~s~~~dg~i~v  296 (372)
                       |+++.|++++.|+++++||+..++....+..|...+..                  ..|+|+ ++.++++|+.||.|++
T Consensus       264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l  343 (393)
T 4gq1_A          264 GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL  343 (393)
T ss_dssp             TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred             cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence             79999999999999999999887766655554443333                  234433 4446677889999999


Q ss_pred             Eecccc------cCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          297 NSVLLL------TRSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       297 wd~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      ||+.+.      ..|..+|.+++|+|||++||+++++.+.
T Consensus       344 wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          344 INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            998743      3677899999999999999999744333

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1e-26  Score=210.59  Aligned_cols=238  Identities=13%  Similarity=0.041  Sum_probs=179.0

Q ss_pred             ccCCceeEeeeeeCCCCC--ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+.+..+.+|+.......  ..+.+|...|.+++|+|++++|++++.||.|++||+.++....    ...|...|.++.|
T Consensus        60 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~  135 (368)
T 3mmy_A           60 GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHW  135 (368)
T ss_dssp             EETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEE
Confidence            455677889998763333  5678899999999999999999999999999999999886544    3457788999999


Q ss_pred             --CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccc-----------------eecc--------CCCCccccE
Q 017421          178 --SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD-----------------FSAA--------DDGGYSFGI  230 (372)
Q Consensus       178 --~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~--------~~~~h~~~i  230 (372)
                        +|++++|++++.||.|++||+++++...............                 +...        ....+...+
T Consensus       136 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  215 (368)
T 3mmy_A          136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH  215 (368)
T ss_dssp             EECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCE
T ss_pred             EeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCC
Confidence              9999999999999999999999887543332211000000                 0000        001223355


Q ss_pred             EEEEEcCCCCE----EEEEeCCCeEEEEECCCC---eEEEEeecCCC------------CeEEEEEeCCCCCEEEEEeCC
Q 017421          231 FSLKFSTDGRE----LVAGSSDDCIYVYDLEAN---KLSLRILAHTS------------DVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       231 ~~~~~sp~~~~----l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~------------~v~~~~~sp~~~~~l~s~~~d  291 (372)
                      .++.+.++...    +++++.||.|++||++..   .....+..|..            .|++++|+ |++++|++++.|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~d  294 (368)
T 3mmy_A          216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-PVHGTLATVGSD  294 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC-TTTCCEEEEETT
T ss_pred             ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe-cCCCEEEEEccC
Confidence            66666555443    999999999999999987   55667777765            79999999 899999999999


Q ss_pred             CeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          292 NLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       292 g~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |.|++||+++      +..|..+|.+++|+|+|++|++++...   |...+.+|+....+
T Consensus       295 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~---~~~~~~~~~~~~~~  351 (368)
T 3mmy_A          295 GRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD---WSKGHEFYNPQKKN  351 (368)
T ss_dssp             SCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC---STTCGGGCCTTSCC
T ss_pred             CeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc---ccccccccCCCccc
Confidence            9999999973      447889999999999999999886321   33444455554443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=4.8e-27  Score=213.80  Aligned_cols=193  Identities=18%  Similarity=0.211  Sum_probs=154.9

Q ss_pred             ccCCCCcc-----ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc
Q 017421           92 NYSGRGRF-----SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK  166 (372)
Q Consensus        92 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  166 (372)
                      .|++++.+     .+.+..+++|+.........+ .|...|++++|+|||++|++++.+ .+.+|+..++..+... ...
T Consensus       140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~-~~~  216 (365)
T 4h5i_A          140 YISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK-TDF  216 (365)
T ss_dssp             EECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE-CCC
T ss_pred             EEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee-ecC
Confidence            46777765     224567889987666555444 477889999999999999999865 5667777766554432 345


Q ss_pred             cCCcceEEEEECCCCCEEEEEeCCC----eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE
Q 017421          167 SLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  242 (372)
Q Consensus       167 ~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l  242 (372)
                      .|...|.+++|+|+++.+++++.++    .+++|++.............            .+|...|++++|+|||++|
T Consensus       217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV------------TNRFKGITSMDVDMKGELA  284 (365)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE------------ESSCSCEEEEEECTTSCEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeee------------cCCCCCeEeEEECCCCCce
Confidence            6778899999999999999998877    68889987765432221111            1466799999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          243 VAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      |+|+.|++|+|||+++++++..+ .+|...|++++|+ |||++|++|+.|++|+|||+.
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS-pdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS-PDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC-TTSCEEEEEETTSEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC-CCCCEEEEEeCCCeEEEEEcC
Confidence            99999999999999999998875 6899999999999 999999999999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.1e-27  Score=217.73  Aligned_cols=199  Identities=10%  Similarity=0.062  Sum_probs=154.7

Q ss_pred             eEeeeeeCCCCCcccc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc-----ceEEEEECC
Q 017421          106 HMLSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSP  179 (372)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~  179 (372)
                      ...|.++..+....+. .|...|.+++|||+|++||+++.||.|+||+.+.  .+..   .. |..     .+.+++|+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~---l~-~~~~~~~~sv~svafSP  139 (588)
T 2j04_A           66 ENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWNP  139 (588)
T ss_dssp             CCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE---CC-CSSCSTTTCEEEEEECS
T ss_pred             cceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee---cc-CCCccccccEEEEEEcC
Confidence            3444455444433443 5688999999999999999999999999999644  2222   22 332     599999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeee----cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESL----ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD  255 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd  255 (372)
                      ||++|++|+.||+|++||+.++.....    ......+         ..+|...|.+++|+|||  +++++.|++|++||
T Consensus       140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~---------~~gh~~~V~sVawSPdg--Laass~D~tVrlWd  208 (588)
T 2j04_A          140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS---------DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMT  208 (588)
T ss_dssp             SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS---------CTTCCCCEEEEEEETTE--EEEEETTCCEEEEC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc---------cccccccEEEEEEcCCc--EEEEeCCCeEEEEE
Confidence            999999999999999999998753110    0111100         11577899999999999  88889999999999


Q ss_pred             CCCCeE---EEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----cc-CCCCCeeEEEe--ccCCCeEEE
Q 017421          256 LEANKL---SLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LT-RSINPCNKYLF--NPCNKYLII  323 (372)
Q Consensus       256 ~~~~~~---~~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~-~~~~~v~~~~~--s~~g~~l~~  323 (372)
                      +..+..   ..++ .+|...|.+++|+   |+.|++++ ++.|++||+..     .. +|...|+.++|  +|+++.|++
T Consensus       209 ~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          209 VSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             CCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred             CCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE
Confidence            988773   3556 4788899999998   58899887 69999999872     22 79999999999  999999998


Q ss_pred             Ee
Q 017421          324 YL  325 (372)
Q Consensus       324 ~~  325 (372)
                      +.
T Consensus       285 a~  286 (588)
T 2j04_A          285 SN  286 (588)
T ss_dssp             CS
T ss_pred             Ec
Confidence            85

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2e-26  Score=215.55  Aligned_cols=206  Identities=16%  Similarity=0.084  Sum_probs=168.5

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEeeec------------------------------------
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILA------------------------------------  165 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~------------------------------------  165 (372)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   .+......                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578899999999966665 56899999998886   33221100                                    


Q ss_pred             ---------------ccCCcceEEEEECCCCCEE-EEEeCCCeEEEEECC--CCceeeecceeecccccceeccCCCCcc
Q 017421          166 ---------------KSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYS  227 (372)
Q Consensus       166 ---------------~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~  227 (372)
                                     .+|...|.+++|+|++++| ++++.||.|++||+.  ++.........              .|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~~  149 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CFS  149 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------ECS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cCC
Confidence                           1233469999999999996 888899999999998  66654333211              244


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----EeecCCCCeEEEEEeCCC---CCEEEEEeCCCeEEEEecc
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~~---~~~l~s~~~dg~i~vwd~~  300 (372)
                      ..|++++|+|++++|++++.+|.|++|++.+++...    .+.+|...|++++|+ |+   +++|++++.|+.|++||++
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEES
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEECC
Confidence            589999999999999999999999999998876543    677899999999999 88   8999999999999999987


Q ss_pred             c-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          301 L-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       301 ~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +       ..+|...|.+++|+ ++++|++++      .|+.|++||+.+++.+..+..+
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~------~d~~v~vwd~~~~~~~~~~~~~  281 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG------GDDKIFAWDWKTGKNLSTFDYN  281 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC-STTEEEEEE------SSSEEEEEETTTCCEEEEEECH
T ss_pred             CCceeeeeecCCCCceEEEEEC-CCCEEEEEe------CCCeEEEEECCCCcEeeeecch
Confidence            3       33788999999999 999999886      6899999999999988888643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.6e-26  Score=202.89  Aligned_cols=192  Identities=11%  Similarity=0.043  Sum_probs=136.4

Q ss_pred             CceEEEEECCC----CCEEEEEeC--------------------CCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECC
Q 017421          125 SRAYVSQFSAD----GSLFVAGFQ--------------------ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       125 ~~v~~~~~s~~----~~~l~~~~~--------------------dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      ..|+.++|+||    ++.+++++.                    |+.|++|++.. ++.+..   ...|...+..++|+|
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s---~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN---QFLMPPEETILTFAE  188 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEE---EEECCCSSCEEEEEE
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeee---eccCCCceeeEEeec
Confidence            36778888888    777777653                    66677777733 433332   224555667777777


Q ss_pred             ---CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE------------EE
Q 017421          180 ---DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL------------VA  244 (372)
Q Consensus       180 ---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l------------~s  244 (372)
                         ++..|++++.|++|++||++++++......   +          ..+...+.+++|+|+|.++            ++
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g---~----------~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS  255 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI---D----------DSYQASVCHKAYSEMGLLFIVLSHPCAKESESL  255 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCCEEEEEEC---C----------C---CCCEEEEEEETTEEEEEEC----------
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCcEEEEEcC---C----------CcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence               668899999999999999999987554431   0          0123468888999999876            56


Q ss_pred             EeCCCeEEEEECCCCeEEEEe-----ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCee-EE
Q 017421          245 GSSDDCIYVYDLEANKLSLRI-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCN-KY  312 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~-~~  312 (372)
                      |+.|++|++||..+++.+..+     .+|...+.+..+   ++.++++++.|++|+|||+.+      +.+|...+. .+
T Consensus       256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v  332 (356)
T 2w18_A          256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV  332 (356)
T ss_dssp             --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred             cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence            788999999999999887665     366655544444   378999999999999999974      346766555 58


Q ss_pred             EeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          313 LFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +|+|||++|++++      .|++|+|||+
T Consensus       333 afSPDG~~LaSGS------~D~TIklWd~  355 (356)
T 2w18_A          333 KWSGTDSHLLAGQ------KDGNIFVYHY  355 (356)
T ss_dssp             EECSSSSEEEEEC------TTSCEEEEEE
T ss_pred             EECCCCCEEEEEE------CCCcEEEecC
Confidence            9999999999997      7999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=3.5e-26  Score=207.28  Aligned_cols=221  Identities=15%  Similarity=0.123  Sum_probs=163.9

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE-EEEeCCCeEEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVD  197 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd  197 (372)
                      ....|...|++++|+|||++|++|+.++ ++||++.+........    +. .+..+.+.++++.+ ++++.|+.|++||
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE----MR-HLSKVRMLHRTNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE----CS-CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee----cC-CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence            4578999999999999999999998775 7899998765443311    11 37788899988877 4567788999999


Q ss_pred             CCCCceeeecceeec------------------------ccc--------------------ccee--------------
Q 017421          198 VGSGTMESLANVTEI------------------------HDG--------------------LDFS--------------  219 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~------------------------~~~--------------------~~~~--------------  219 (372)
                      +.+++..........                        ...                    +.+.              
T Consensus        88 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~  167 (355)
T 3vu4_A           88 DVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQ  167 (355)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECC
T ss_pred             CCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECC
Confidence            988765332211000                        000                    0000              


Q ss_pred             --------------------ccCCCCccccEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeEEEEee-c-CCCCeEEEE
Q 017421          220 --------------------AADDGGYSFGIFSLKFSTDGRELVAGSSDDC-IYVYDLEANKLSLRIL-A-HTSDVNTVC  276 (372)
Q Consensus       220 --------------------~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~  276 (372)
                                          .....+|...|++++|+|+|++|++|+.|++ |++||+++++++..+. + |...|++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~  247 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMK  247 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEE
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEE
Confidence                                0011468899999999999999999999998 9999999999999998 5 999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEecccccC-----------------------------CCCCeeEEEeccCCCeEEEEeee
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLLTR-----------------------------SINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------------~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      |+ |++++|++++.|++|++||++....                             ...+...++|+++|+.++++.  
T Consensus       248 ~s-~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~--  324 (355)
T 3vu4_A          248 WS-TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP--  324 (355)
T ss_dssp             EC-TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET--
T ss_pred             EC-CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe--
Confidence            99 9999999999999999999863210                             112236789999999999886  


Q ss_pred             eEEEeeceEEEeecccceEEEEEee
Q 017421          328 VISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                          -|+.+++|++..+.....+..
T Consensus       325 ----~dg~~~~~~~~~~~~~~~~~~  345 (355)
T 3vu4_A          325 ----HTRMIETFKVVFDDEMERWLI  345 (355)
T ss_dssp             ----TTTEEEEEEEEEETTTTEEEE
T ss_pred             ----CCCeEEEEEEEcCCCCceEEE
Confidence                488899998877654444333

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=6.1e-26  Score=211.40  Aligned_cols=218  Identities=18%  Similarity=0.175  Sum_probs=179.3

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+.........+.+|...|.+++|+  ++.|++|+.||.|++||+.++..........+|...|.++.|  
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--  264 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--  264 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred             EcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence            4556788899988887778888999999999997  458999999999999999987655443456688889999999  


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      +++++++++.||.|++||+++++......                +|...|.++.|+  ++++++|+.||.|++||++++
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------------~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLN----------------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEE----------------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEc----------------CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence            78899999999999999999987644432                466789999985  679999999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---------------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---------------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---------------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +++..+.+|...|.+++|   ++.+|++|+.||.|++||++.               +..|...|.+++|  ++.+|+++
T Consensus       327 ~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  401 (435)
T 1p22_A          327 ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS  401 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred             CEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence            999999999999999988   578999999999999999852               3478889999999  67888887


Q ss_pred             eeeeEEEeeceEEEeecccceEEEEE
Q 017421          325 LILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       325 ~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +      .|++|++||+.+.......
T Consensus       402 s------~Dg~i~iwd~~~~~~~~~~  421 (435)
T 1p22_A          402 S------HDDTILIWDFLNDPAAQAE  421 (435)
T ss_dssp             C------SSSEEEEEC----------
T ss_pred             e------CCCEEEEEECCCCCCcccC
Confidence            6      6999999999887655443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=3.2e-26  Score=221.89  Aligned_cols=202  Identities=11%  Similarity=0.026  Sum_probs=172.7

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEeeecccCCcc-eEEEEECC--CCCEEEEEeCCCeEE
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWT-VTDTSLSP--DQRHLVYASMSPIVH  194 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~dg~i~  194 (372)
                      .|.+.|.+++|+|++++|++++ ++.|.||++.++    .....   ..+|... |.+++|+|  ++++|++++.||.|+
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~---~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ---FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE---ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE---EecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            5788999999999999999998 789999999977    44443   5688889 99999999  999999999999999


Q ss_pred             EEECCCC------ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEE
Q 017421          195 IVDVGSG------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLR  264 (372)
Q Consensus       195 vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~  264 (372)
                      +||+.++      .........              +|...|.+++|+|++++|++++.+    +.|++||  .++.+..
T Consensus        92 vw~~~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~  155 (615)
T 1pgu_A           92 VWGWTFDKESNSVEVNVKSEFQ--------------VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGE  155 (615)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEE--------------CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEE
T ss_pred             EEeCCCCcccccccccccchhh--------------cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCccee
Confidence            9999755      211111111              356699999999999999999987    6888888  5678888


Q ss_pred             eecCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEeccc------ccCCCC---CeeEEEeccC-CCeEEEEeeeeEEEee
Q 017421          265 ILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLL------LTRSIN---PCNKYLFNPC-NKYLIIYLILVISIYS  333 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~------~~~~~~---~v~~~~~s~~-g~~l~~~~~~~~~~~d  333 (372)
                      +.+|...|.+++|+ |++. ++++++.|+.|++||++.      +..|..   .|.+++|+|+ +++|++++      .|
T Consensus       156 ~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d  228 (615)
T 1pgu_A          156 VSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG------SD  228 (615)
T ss_dssp             CCSCSSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE------TT
T ss_pred             eecCCccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe------CC
Confidence            89999999999999 7776 899999999999999873      346777   8999999999 99999886      68


Q ss_pred             ceEEEeecccceEEEEE
Q 017421          334 PNILLDNYFLLRTFYSF  350 (372)
Q Consensus       334 ~~i~lw~~~~~~~~~~~  350 (372)
                      +.|++||+.+++.+..+
T Consensus       229 g~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             CCEEEEETTTCCEEEEC
T ss_pred             CeEEEEECCCCCEeEEe
Confidence            99999999999988887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=3.6e-25  Score=206.72  Aligned_cols=217  Identities=18%  Similarity=0.204  Sum_probs=187.1

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.+..+.+|+.........+.+|...|.+++|+  +++|++|+.||.|++||+.+++.+..   ..+|...|.++.|+ 
T Consensus       135 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~-  208 (445)
T 2ovr_B          135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGHTSTVRCMHLH-  208 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEE-
T ss_pred             EECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCCCCcEEEEEec-
Confidence            5667788899988877778889999999999998  67999999999999999999876655   55788899999995 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                       ++.+++++.||.|++||+.+++......                +|...|.+++|  +++++++++.||.|++||++++
T Consensus       209 -~~~l~s~s~dg~i~~wd~~~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~  269 (445)
T 2ovr_B          209 -EKRVVSGSRDATLRVWDIETGQCLHVLM----------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE  269 (445)
T ss_dssp             -TTEEEEEETTSEEEEEESSSCCEEEEEE----------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred             -CCEEEEEeCCCEEEEEECCCCcEEEEEc----------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence             5789999999999999999887644332                46679999998  6889999999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      +.+..+.+|...|.+++|   ++.++++++.|+.|++||+++      +..|...+.++.++  ++++++++      .|
T Consensus       270 ~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~------~d  338 (445)
T 2ovr_B          270 TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN------AD  338 (445)
T ss_dssp             EEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE------TT
T ss_pred             cEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe------CC
Confidence            999999999999999998   578999999999999999974      34677888877764  56888775      68


Q ss_pred             ceEEEeecccceEEEEEee
Q 017421          334 PNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       334 ~~i~lw~~~~~~~~~~~~~  352 (372)
                      +.|++||+.+++.+..+.+
T Consensus       339 g~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             SCEEEEETTTCCEEEEECS
T ss_pred             CeEEEEECCCCcEEEEEcc
Confidence            9999999999998888865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3e-26  Score=213.53  Aligned_cols=220  Identities=9%  Similarity=0.004  Sum_probs=152.7

Q ss_pred             cCCCCcc-ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcc
Q 017421           93 YSGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT  171 (372)
Q Consensus        93 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  171 (372)
                      +++++.+ .++.....+.+   ...+..+.+|...|++++|+|+|       .++.+.+|+.+..   .  .....+...
T Consensus        23 ~SpDG~~iASas~D~TV~d---~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---~--~~~~~~~~~   87 (588)
T 2j04_A           23 WARDGTLYLTTFPDISIGQ---PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN---G--LLNSQPVCY   87 (588)
T ss_dssp             ECTTSCEEEECSSSEEEEE---ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS---C--SSTTSCSCC
T ss_pred             ECCCCCEEEEEcCCceeec---ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc---e--EeecCCCCc
Confidence            4555543 33333444441   22233445666666666666666       3444444443221   1  112134668


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeE
Q 017421          172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI  251 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i  251 (372)
                      |.+++|+|+|+.|++++.||.|++||.++  +....   . +..        .-....+.+++|||||++|++|+.||+|
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l---~-~~~--------~~~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL---D-SKG--------NLSSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC---C-CSS--------CSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec---c-CCC--------ccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence            99999999999999999999999999543  21111   1 100        0002259999999999999999999999


Q ss_pred             EEEECCCCe-------EEEEe----ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---------c-cCCCCCee
Q 017421          252 YVYDLEANK-------LSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---------L-TRSINPCN  310 (372)
Q Consensus       252 ~iwd~~~~~-------~~~~~----~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---------~-~~~~~~v~  310 (372)
                      ++||+.++.       .+.++    .+|...|.+++|+ |+|  +++++.|++|++||+..         + ..|...|.
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~  230 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT  230 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence            999999875       35666    5677899999999 888  88889999999999862         3 25778899


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +++|+  |+.|++++       +++|++||+.+++......+|
T Consensus       231 svaFs--g~~LASa~-------~~tIkLWd~~~~~~~~~~~gh  264 (588)
T 2j04_A          231 DLKIV--DYKVVLTC-------PGYVHKIDLKNYSISSLKTGS  264 (588)
T ss_dssp             CEEEE--TTEEEEEC-------SSEEEEEETTTTEEEEEECSC
T ss_pred             EEEEE--CCEEEEEe-------CCeEEEEECCCCeEEEEEcCC
Confidence            99999  68888883       688999999988774333355

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=4e-25  Score=196.38  Aligned_cols=221  Identities=14%  Similarity=0.168  Sum_probs=171.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                      .++|+||+++ +||+| .|++|+|||+.+++.+.. ....+|...|++++|+|++++|++|+.||.|++||+++++....
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            5679999986 67766 489999999999876654 33567778899999999999999999999999999999876443


Q ss_pred             cceeecc-------cccceecc------------------CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-
Q 017421          207 ANVTEIH-------DGLDFSAA------------------DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-  260 (372)
Q Consensus       207 ~~~~~~~-------~~~~~~~~------------------~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-  260 (372)
                      .......       ........                  ...+|...+..+.|++++++|++++.|+.|++||+++++ 
T Consensus       105 ~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             ecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            3211000       00000000                  013678899999999999999999999999999998765 


Q ss_pred             ---EEEEeecCCCCeEEEEEeCCCCCEEE--EEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          261 ---LSLRILAHTSDVNTVCFGDESGHLIY--SGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       261 ---~~~~~~~~~~~v~~~~~sp~~~~~l~--s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                         .......+...|.+++++|.++..+.  +++.++.|++||.+...     .+...+..+.|+|++..++++++.   
T Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~---  261 (318)
T 4ggc_A          185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF---  261 (318)
T ss_dssp             BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT---
T ss_pred             cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc---
Confidence               33455678889999999955555553  55678999999987433     567789999999999998876422   


Q ss_pred             EeeceEEEeecccceEEEEEeeeE
Q 017421          331 IYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                       .|+.|++||+.+++.+..+.+|.
T Consensus       262 -~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          262 -AQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             -TTCCEEEEETTTCCEEEEECCCS
T ss_pred             -CCCEEEEEECCCCcEEEEEcCCC
Confidence             48999999999999999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=3.9e-25  Score=206.46  Aligned_cols=204  Identities=15%  Similarity=0.180  Sum_probs=174.7

Q ss_pred             CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      ....+.+|.+.|.. ++++++++|++|+.||.|++||+.+++.+..   ..+|...|.++.|+  ++.+++++.||.|++
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLKV  183 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence            45567889887543 3555699999999999999999998876655   56888899999997  679999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      ||+.+++......                +|...|.++.|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus       184 wd~~~~~~~~~~~----------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  245 (445)
T 2ovr_B          184 WNAETGECIHTLY----------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  245 (445)
T ss_dssp             EETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             EECCcCcEEEEEC----------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence            9999887644332                577799999996  5689999999999999999999999999999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      +|   +++++++++.||.|++||+++      +..|...|.++.|  ++.++++++      .|+.|++||+.+++.+..
T Consensus       246 ~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~------~d~~i~i~d~~~~~~~~~  314 (445)
T 2ovr_B          246 QY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS------LDTSIRVWDVETGNCIHT  314 (445)
T ss_dssp             EE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE------TTSCEEEEETTTCCEEEE
T ss_pred             EE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe------CCCeEEEEECCCCCEEEE
Confidence            98   578899999999999999873      4478899999999  788888876      689999999999999988


Q ss_pred             EeeeE
Q 017421          350 FMVHI  354 (372)
Q Consensus       350 ~~~h~  354 (372)
                      +.+|.
T Consensus       315 ~~~~~  319 (445)
T 2ovr_B          315 LTGHQ  319 (445)
T ss_dssp             ECCCC
T ss_pred             EcCCc
Confidence            87763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=3.3e-26  Score=210.41  Aligned_cols=210  Identities=11%  Similarity=-0.001  Sum_probs=149.6

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE--eeecccCCcceEEEEECC--------CCCEEEEEeCCC
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSP--------DQRHLVYASMSP  191 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg  191 (372)
                      .|...+....+++++++|++++.|++|+|||+..+.....  .....+|...|.+++|+|        |+++|++++.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            3445555556666788999999999999999998865433  234678999999999998        889999999999


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEE------
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLR------  264 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~------  264 (372)
                      +|++||+.++.......                +|..++.+++|+|++ ++|++++.|++|++||+++++....      
T Consensus       167 tv~~Wd~~~~~~~~~~~----------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGY----------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             EEEEEEEETTEEEEEEE----------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             eEEEEECCCCceeeeec----------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence            99999998776533222                356689999999987 4799999999999999988754322      


Q ss_pred             -------------------eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeE--------
Q 017421          265 -------------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNK--------  311 (372)
Q Consensus       265 -------------------~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~--------  311 (372)
                                         ..+|...+.++.|++++++.|++++.|+.+++||+...      ..+...+..        
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                               13577789999998889999999999999999998632      122222222        


Q ss_pred             ----------EEecc-CCC-eEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          312 ----------YLFNP-CNK-YLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       312 ----------~~~s~-~g~-~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                                ..|+| .+. ++++++      .|++|++||+.+++.+..+.+|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~sgs------~Dg~V~lwd~~~~~~~~~~~~~  358 (393)
T 4gq1_A          311 GISLFPSLLGACPHPRYMDYFATAHS------QHGLIQLINTYEKDSNSIPIQL  358 (393)
T ss_dssp             EECSSCCSSCCEECSSCTTEEEEEET------TTTEEEEEETTCTTCCEEEEEC
T ss_pred             cccccCcceeEEEccCCCCEEEEEEC------CCCEEEEEECCCCcEEEEecCC
Confidence                      23333 233 444444      5899999999999888777766

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.1e-25  Score=222.21  Aligned_cols=221  Identities=11%  Similarity=-0.003  Sum_probs=171.7

Q ss_pred             CCCCceEEEEECC----------CCCEEEEEeCCCcEEEEeCCCCeEEEEe-----------------------------
Q 017421          122 QTTSRAYVSQFSA----------DGSLFVAGFQASQIRIYDVERGWKIQKD-----------------------------  162 (372)
Q Consensus       122 ~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------------------  162 (372)
                      .+...|..+.+.+          +...+++++.||.|++|++.++......                             
T Consensus       340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~  419 (902)
T 2oaj_A          340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG  419 (902)
T ss_dssp             SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred             CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence            4577888888866          3447888999999999999766432210                             


Q ss_pred             ---------eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEE
Q 017421          163 ---------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL  233 (372)
Q Consensus       163 ---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  233 (372)
                               ..+.+|...+.+++|+|++++|++|+.|++|++||+.++.......+...     +......+|...|.++
T Consensus       420 ~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~-----l~~~~~~~h~~~V~sv  494 (902)
T 2oaj_A          420 ALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVN-----LSRTLNKAKELAVDKI  494 (902)
T ss_dssp             HHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE-----HHHHTTCSSSCCEEEE
T ss_pred             HHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEee-----chhhcCCCCCCceeEE
Confidence                     01223444455667789999999999999999999998753210000000     0000012577899999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCC---------------------------------------------eEEEEeecC
Q 017421          234 KFSTDGRELVAGSSDDCIYVYDLEAN---------------------------------------------KLSLRILAH  268 (372)
Q Consensus       234 ~~sp~~~~l~s~s~dg~i~iwd~~~~---------------------------------------------~~~~~~~~~  268 (372)
                      +|+||+++||+|+.||+|++||+.++                                             +++..+.+|
T Consensus       495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h  574 (902)
T 2oaj_A          495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN  574 (902)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred             EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence            99999999999999999999999765                                             246778889


Q ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----------c-cCCCCCeeEEEec-----cCC---CeEEEEeeee
Q 017421          269 TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----------L-TRSINPCNKYLFN-----PCN---KYLIIYLILV  328 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----------~-~~~~~~v~~~~~s-----~~g---~~l~~~~~~~  328 (372)
                      .+.|++++|+ |+| +||+|+.|++|++||++.           + .+|...|++++|+     |||   ++|++++   
T Consensus       575 ~~~V~svafS-pdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs---  649 (902)
T 2oaj_A          575 KGKTSAINNS-NIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGT---  649 (902)
T ss_dssp             SCSEEEEEEC-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEE---
T ss_pred             CCcEEEEEec-CCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEe---
Confidence            9999999999 999 999999999999999863           1 2788889999999     886   7888886   


Q ss_pred             EEEeeceEEEeec---ccceEEEEEeeeEE
Q 017421          329 ISIYSPNILLDNY---FLLRTFYSFMVHIL  355 (372)
Q Consensus       329 ~~~~d~~i~lw~~---~~~~~~~~~~~h~~  355 (372)
                         .|++|++||+   .+|+....|.+|..
T Consensus       650 ---~D~tv~~wd~~p~~~g~~~~~~~~~~~  676 (902)
T 2oaj_A          650 ---DMGEVITYKILPASGGKFDVQLMDITN  676 (902)
T ss_dssp             ---TTSEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred             ---cCCcEEEEEEecCCCCcEEEEecCcee
Confidence               6999999999   89999999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.6e-25  Score=199.60  Aligned_cols=195  Identities=13%  Similarity=0.040  Sum_probs=149.9

Q ss_pred             CCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421          122 QTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  199 (372)
Q Consensus       122 ~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  199 (372)
                      +|...|.+++|+|  ++++|++++.||.|++||+.++.....  ....+...+.+++|+|++.+|++|+.||.|++||++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV--HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS  200 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE--ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE--EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            5678999999999  999999999999999999998866433  223455579999999999999999999999999999


Q ss_pred             CCcee-eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCCCeE--
Q 017421          200 SGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVN--  273 (372)
Q Consensus       200 ~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~--  273 (372)
                      +++.. ....               .+|..+|++++|+|++.+|++++ ++.|++||+++++.+..+..   |...+.  
T Consensus       201 ~~~~~~~~~~---------------~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          201 SPDQASSRFP---------------VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             CTTSCCEECC---------------CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             CCCCCccEEe---------------ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence            88754 2221               02777999999999999999999 45999999998876544433   334443  


Q ss_pred             EEEEeCCCCCEEEEEeC-CCeEEEEecccccC--CCCCeeEEEecc---CCCeEEEEeeeeEEEeeceEEEeec
Q 017421          274 TVCFGDESGHLIYSGSD-DNLCKVNSVLLLTR--SINPCNKYLFNP---CNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~-dg~i~vwd~~~~~~--~~~~v~~~~~s~---~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +++|+ |++++|++++. |+.|++|++.....  ...++..++|.|   +++.++++.      .|+.+.++-.
T Consensus       265 ~~~~~-~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~~~~~~~  331 (343)
T 3lrv_A          265 TYDID-DSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVC------GDGGIAAILK  331 (343)
T ss_dssp             EEEEC-TTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEE------ETTEEEEEEE
T ss_pred             EEEEC-CCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEe------cCCceEEEEe
Confidence            69999 99999999998 99999999864321  114566888998   888887764      4677776643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=2.7e-24  Score=199.35  Aligned_cols=204  Identities=15%  Similarity=0.128  Sum_probs=168.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      .++.|+||++ +.|++|. |++|+|||+.+++.... ....+|...|++++|+|++++|++|+.||.|++||+.+++...
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            4677999975 5777765 89999999999865543 3356777789999999999999999999999999999987654


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCE
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHL  284 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~  284 (372)
                      ...                +|...+.+++++  +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+ +++++
T Consensus       184 ~~~----------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~  244 (420)
T 4gga_A          184 NMT----------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRH  244 (420)
T ss_dssp             EEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSE
T ss_pred             EEe----------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec-CCCCe
Confidence            433                577789888775  679999999999999999864 4667788999999999999 99999


Q ss_pred             EEEEeCCCeEEEEeccc----------ccCCCCCeeEEEeccCCCeEE-EEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          285 IYSGSDDNLCKVNSVLL----------LTRSINPCNKYLFNPCNKYLI-IYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       285 l~s~~~dg~i~vwd~~~----------~~~~~~~v~~~~~s~~g~~l~-~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +++++.|+.+++|+...          ...|...|..++|+|++..++ ++++    ..|++|++||+.+++.+..+..|
T Consensus       245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g----s~D~~I~iwd~~t~~~~~~~~~~  320 (420)
T 4gga_A          245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG----TSDRHIRIWNVCSGACLSAVDAH  320 (420)
T ss_dssp             EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC----TTTCEEEEEETTTTEEEEEEECS
T ss_pred             eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee----cCCCEEEEEeCCccccceeeccc
Confidence            99999999999999863          236788999999999876554 4321    15899999999999998888766


Q ss_pred             EE
Q 017421          354 IL  355 (372)
Q Consensus       354 ~~  355 (372)
                      ..
T Consensus       321 ~~  322 (420)
T 4gga_A          321 SQ  322 (420)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=3.6e-25  Score=194.27  Aligned_cols=183  Identities=11%  Similarity=0.026  Sum_probs=138.3

Q ss_pred             CceeEeeeeeCC-CCCccccCCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          103 DCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       103 ~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      ++.+++|.+.+. +....+..|+..++.++|+|   ++.+|++++.|++|+|||+.+++.+..+.....+...+.+++|+
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence            677778887663 33445667888888888888   67899999999999999999998777643222223467788999


Q ss_pred             CCCCEE------------EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          179 PDQRHL------------VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       179 ~~~~~l------------~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      |+++++            ++|+.|++|++||..+++.........           ..+|...+.+..++  +.++++++
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~-----------p~Gh~~~~lsg~~s--g~~lASgS  302 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL-----------PPGQAGRFLEGDVK--DHCAAAIL  302 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC-----------CTTCCCCEEEEEEE--TTEEEEEE
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec-----------cCCCcceeEccccC--CCEEEEEc
Confidence            999876            567789999999999987654322110           01454455444444  78999999


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          247 SDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      .|++|+|||+.+++++.++.+|...+. +++|+ |+|++|++|+.|++|+|||+
T Consensus       303 ~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS-PDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS-GTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTTCSEEEEECCC--CCCCEEEEC-SSSSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC-CCCCEEEEEECCCcEEEecC
Confidence            999999999999999999999987655 58999 99999999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=1.3e-23  Score=192.58  Aligned_cols=226  Identities=14%  Similarity=0.108  Sum_probs=176.4

Q ss_pred             cCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      +.+..+.+|+.........+..| ..+.+++|+|++++| ++++.|+.|++||+.+++.+....   .+. .+.+++|+|
T Consensus         9 ~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---~~~-~v~~~~~sp   83 (391)
T 1l0q_A            9 SESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AGS-SPQGVAVSP   83 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CSS-SEEEEEECT
T ss_pred             CCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE---CCC-CccceEECC
Confidence            34566777777655545555555 458999999999987 667789999999999887655422   222 799999999


Q ss_pred             CCCEEEEEe-CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECC
Q 017421          180 DQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE  257 (372)
Q Consensus       180 ~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~  257 (372)
                      ++++|++++ .++.|++||+.+++......                 +...+.+++|+|+++.| ++++.++.|++||+.
T Consensus        84 dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeEEEEEe-----------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            999886554 57999999999887644332                 12368999999999977 678889999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEEeCCCCCEE-EEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          258 ANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      +++.+..+..+ ..+.+++|+ |+++.| ++++.++.|++||+++..     .+...+.+++|+|+|++|+++....   
T Consensus       147 ~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---  221 (391)
T 1l0q_A          147 TKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK---  221 (391)
T ss_dssp             TTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS---
T ss_pred             CCcEEEEEecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCc---
Confidence            99988888755 567999999 888877 567788999999997432     3556789999999999998874110   


Q ss_pred             eeceEEEeecccceEEEEEeee
Q 017421          332 YSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      .++.|++||..+++.+..+..|
T Consensus       222 ~~~~v~~~d~~~~~~~~~~~~~  243 (391)
T 1l0q_A          222 YFNTVSMIDTGTNKITARIPVG  243 (391)
T ss_dssp             SCCEEEEEETTTTEEEEEEECC
T ss_pred             CCCcEEEEECCCCeEEEEEecC
Confidence            3788999999999888777655

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=3.6e-23  Score=191.41  Aligned_cols=229  Identities=17%  Similarity=0.114  Sum_probs=173.9

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (372)
                      ..+.+|+.. ......+.+|...|.+++|+|||++|++++.++   .|++||+.+++...    ...+...+.+++|+||
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----l~~~~~~~~~~~~spd  233 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPD  233 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTT
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE----eecCCCcccCEEEcCC
Confidence            456677664 455677888999999999999999999999875   99999999885532    3345567999999999


Q ss_pred             CCEEE-EEeCCC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CC--eEEEE
Q 017421          181 QRHLV-YASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVY  254 (372)
Q Consensus       181 ~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg--~i~iw  254 (372)
                      |+.|+ +++.++  .|++||+.+++...+.                 .|...+.+++|+|||++|++++. ++  .|++|
T Consensus       234 g~~la~~~~~~g~~~i~~~d~~~~~~~~l~-----------------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          234 GSKLAFALSKTGSLNLYVMDLASGQIRQVT-----------------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECC-----------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCEEEEEEecCCCceEEEEECCCCCEEeCc-----------------CCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            99888 555555  4999999987753322                 24458999999999999988876 44  68888


Q ss_pred             ECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEecccc-----cCCCCCeeEEEeccCCCeEEEEee
Q 017421          255 DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLL-----TRSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       255 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      |+.+++. ..+..+...+.+++|+ |+|++|++++.+   ..|.+||+.+.     ..+ ..+.+++|+|+|++|+.++ 
T Consensus       297 d~~~~~~-~~l~~~~~~~~~~~~s-pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s-  372 (415)
T 2hqs_A          297 NINGGAP-QRITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSS-  372 (415)
T ss_dssp             ETTSSCC-EECCCSSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEE-
T ss_pred             ECCCCCE-EEEecCCCcccCeEEC-CCCCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEE-
Confidence            9988764 4555677789999999 999999888764   58999998742     233 3789999999999988775 


Q ss_pred             eeEEEeec---eEEEeecccceEEEEEeee------EEEeeecccCC
Q 017421          327 LVISIYSP---NILLDNYFLLRTFYSFMVH------ILFSGYLHNDH  364 (372)
Q Consensus       327 ~~~~~~d~---~i~lw~~~~~~~~~~~~~h------~~~~~~~~~~~  364 (372)
                           .++   .|.+||+. ++....+.+|      ..++-++|..+
T Consensus       373 -----~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~~~  413 (415)
T 2hqs_A          373 -----SQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHHHH  413 (415)
T ss_dssp             -----EETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCCCC
T ss_pred             -----cCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccccc
Confidence                 233   78899986 4455556555      44455555443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=5.5e-23  Score=188.29  Aligned_cols=223  Identities=13%  Similarity=0.050  Sum_probs=173.9

Q ss_pred             CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEE-EeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421          102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (372)
                      .+..+.+|+....+....+..+. .+.+++|+|++++|++ ++.++.|++||+.+++.+....   . ...+.+++|+|+
T Consensus        52 ~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~-~~~~~~~~~s~d  126 (391)
T 1l0q_A           52 HSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---T-GKSPLGLALSPD  126 (391)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C-SSSEEEEEECTT
T ss_pred             CCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---C-CCCcceEEECCC
Confidence            45677777765555444444444 9999999999998865 4567999999999986655422   2 235899999999


Q ss_pred             CCEE-EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q 017421          181 QRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEA  258 (372)
Q Consensus       181 ~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~  258 (372)
                      ++.+ ++++.++.|++||+.+++.......                 ...+.+++|+|+++++ ++++.++.|++||+++
T Consensus       127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~  189 (391)
T 1l0q_A          127 GKKLYVTNNGDKTVSVINTVTKAVINTVSV-----------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEec-----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            9987 6777799999999998876443321                 1257899999999887 5777889999999999


Q ss_pred             CeEEEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      ++....+. +...+.+++|+ |++++|++++   .++.|++||+++.+     .....+.+++|+|+|++|+++.     
T Consensus       190 ~~~~~~~~-~~~~~~~~~~~-~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~-----  262 (391)
T 1l0q_A          190 NSVIDTVK-VEAAPSGIAVN-PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVAL-----  262 (391)
T ss_dssp             TEEEEEEE-CSSEEEEEEEC-TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE-----
T ss_pred             CeEEEEEe-cCCCccceEEC-CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEc-----
Confidence            98877776 55688999999 9999888887   68999999987432     2234578999999999885442     


Q ss_pred             EeeceEEEeecccceEEEEEeee
Q 017421          331 IYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      ..|+.+++||+.+++.+..+.+|
T Consensus       263 ~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          263 SFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCCCcEEEEEECC
Confidence            15899999999999998888766

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=3e-23  Score=192.66  Aligned_cols=229  Identities=12%  Similarity=0.033  Sum_probs=178.8

Q ss_pred             CceeEeeeeeCCCCCc-----cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          103 DCCHMLSRYLPVNGPW-----PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      +..+.+|+........     .+.+|...|.+++|+|+++++++++.|+.|++||+.++..+..   ...|...+.+++|
T Consensus       143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~  219 (433)
T 3bws_A          143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT---VDLTGKWSKILLY  219 (433)
T ss_dssp             SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE---EECSSSSEEEEEE
T ss_pred             CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE---EcCCCCCeeEEEE
Confidence            3457777765444333     4568899999999999999999999999999999998866654   3356668999999


Q ss_pred             CCCCCEEEEEe-CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--------CC
Q 017421          178 SPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------SD  248 (372)
Q Consensus       178 ~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--------~d  248 (372)
                      +|+++.+++++ .++.|++||+++++......                 +...+.+++|+|+++++++++        .|
T Consensus       220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d  282 (433)
T 3bws_A          220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-----------------KIGLPRGLLLSKDGKELYIAQFSASNQESGG  282 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred             cCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------------CCCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence            99999886554 79999999999887643332                 123589999999999998887        48


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEE
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLI  322 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~  322 (372)
                      +.|++||+.+++.+..+ .|...+.+++|+ |+++ ++++++.|+.|++||+.+.+     .+...+.+++|+|+|++++
T Consensus       283 g~i~~~d~~~~~~~~~~-~~~~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          283 GRLGIYSMDKEKLIDTI-GPPGNKRHIVSG-NTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EEEEEEETTTTEEEEEE-EEEECEEEEEEC-SSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE
T ss_pred             CeEEEEECCCCcEEeec-cCCCCcceEEEC-CCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEE
Confidence            89999999999877665 356688999999 8886 45666899999999997432     4567789999999999888


Q ss_pred             EEeeeeE---------EEeeceEEEeecccceEEEEEeee
Q 017421          323 IYLILVI---------SIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       323 ~~~~~~~---------~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      ++....-         .-.|+.|++||..+++.+..+.++
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~  400 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG  400 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred             EEecCCCccccccccccccceEEEEEECCCCcEEEEecCC
Confidence            8752110         001568999999999988877654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=5.2e-22  Score=184.28  Aligned_cols=214  Identities=16%  Similarity=0.097  Sum_probs=170.3

Q ss_pred             cCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEE-EeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      +.+..+.+|+.........+..|...+.+++|+|+++.+++ ++.++.|++||+.++..+..   ... ...+.+++|+|
T Consensus       188 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~---~~~-~~~~~~~~~~~  263 (433)
T 3bws_A          188 MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK---TDK-IGLPRGLLLSK  263 (433)
T ss_dssp             GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---CCC-CSEEEEEEECT
T ss_pred             CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE---ecC-CCCceEEEEcC
Confidence            34466777877666666667789999999999999998854 55799999999998866544   222 33589999999


Q ss_pred             CCCEEEEEe--------CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCe
Q 017421          180 DQRHLVYAS--------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDC  250 (372)
Q Consensus       180 ~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~  250 (372)
                      +++.+++++        .|+.|++||+.+++......                 |...+.+++|+|+++.+ ++++.++.
T Consensus       264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~l~~~~~~~~~  326 (433)
T 3bws_A          264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-----------------PPGNKRHIVSGNTENKIYVSDMCCSK  326 (433)
T ss_dssp             TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-----------------EEECEEEEEECSSTTEEEEEETTTTE
T ss_pred             CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-----------------CCCCcceEEECCCCCEEEEEecCCCE
Confidence            999999888        48899999999887544332                 33478899999999755 66688999


Q ss_pred             EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC---------------CCeEEEEeccccc-----CCCCCee
Q 017421          251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---------------DNLCKVNSVLLLT-----RSINPCN  310 (372)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---------------dg~i~vwd~~~~~-----~~~~~v~  310 (372)
                      |++||+.+++.+..+. +...+.+++|+ |++++|++++.               ||.|++||+.+.+     .....+.
T Consensus       327 v~v~d~~~~~~~~~~~-~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~  404 (433)
T 3bws_A          327 IEVYDLKEKKVQKSIP-VFDKPNTIALS-PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT  404 (433)
T ss_dssp             EEEEETTTTEEEEEEE-CSSSEEEEEEC-TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEE
T ss_pred             EEEEECCCCcEEEEec-CCCCCCeEEEc-CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCc
Confidence            9999999998887776 67889999999 99998888876               5799999987432     2356789


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +++|+|+|++|+++..     .|+.|++|++.
T Consensus       405 ~~~~s~dg~~l~~~~~-----~d~~i~v~~~~  431 (433)
T 3bws_A          405 GLDVSPDNRYLVISDF-----LDHQIRVYRRD  431 (433)
T ss_dssp             EEEECTTSCEEEEEET-----TTTEEEEEEET
T ss_pred             eEEEcCCCCEEEEEEC-----CCCeEEEEEec
Confidence            9999999999987641     37889999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=4.9e-22  Score=184.64  Aligned_cols=208  Identities=15%  Similarity=0.157  Sum_probs=152.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------eEEEE--eeecccCCcceEEEEECCCCCEEE----EE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----------WKIQK--DILAKSLRWTVTDTSLSPDQRHLV----YA  187 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~----~~  187 (372)
                      ...++.+++++++.++++++.++ ++||+....          ..+..  ......+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34688899999999999999887 888875311          00100  001123455799999999999999    77


Q ss_pred             eCCCeEEEEECCCCc-----eeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeE
Q 017421          188 SMSPIVHIVDVGSGT-----MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL  261 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~  261 (372)
                      +.|+.|++||+.++.     ........          ....+|...|.+++|+|+ +++|++++.||+|++||++++..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~----------~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYH----------KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEE----------ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeee----------eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            889999999987541     10000000          011257889999999998 78999999999999999999987


Q ss_pred             EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-c----cc-------CCCCCeeEEEeccCCCeEEEEeee--
Q 017421          262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-L----LT-------RSINPCNKYLFNPCNKYLIIYLIL--  327 (372)
Q Consensus       262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-~----~~-------~~~~~v~~~~~s~~g~~l~~~~~~--  327 (372)
                      .....+|...|++++|+ |+|++|++|+.||.|++||++ .    +.       .|...|.++.|++++.++++....  
T Consensus       185 ~~~~~~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG  263 (434)
T ss_dssp             EEEEECGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred             eeeccCCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence            77777888999999999 899999999999999999987 1    11       123378999999998888765321  


Q ss_pred             eEEEeeceEEEeecccc
Q 017421          328 VISIYSPNILLDNYFLL  344 (372)
Q Consensus       328 ~~~~~d~~i~lw~~~~~  344 (372)
                      .+.. ...+++|++...
T Consensus       264 ~~~~-~~~v~i~~l~~~  279 (434)
T 2oit_A          264 TLET-SPDVVMALLPKK  279 (434)
T ss_dssp             CSSS-CCEEEEEECCCT
T ss_pred             ccCC-CCceEEEEeccC
Confidence            1110 134788887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.88  E-value=2.7e-21  Score=178.77  Aligned_cols=216  Identities=14%  Similarity=0.076  Sum_probs=161.5

Q ss_pred             eeEeeee--eCCCCC--ccccCCCCceEEEEECC--------------CCCEEEEEeCC------CcEEEEeCCCCeEEE
Q 017421          105 CHMLSRY--LPVNGP--WPVDQTTSRAYVSQFSA--------------DGSLFVAGFQA------SQIRIYDVERGWKIQ  160 (372)
Q Consensus       105 ~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~s~--------------~~~~l~~~~~d------g~i~vwd~~~~~~~~  160 (372)
                      .+++|+.  ...+..  ..+.+|...+..+++++              .+..++.++.+      +.|++||+... ...
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCE
Confidence            5778887  555433  33677877787777764              25667666554      79999999754 222


Q ss_pred             EeeecccCCcceEEEEECCCCCEEEEEeCCC---eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC
Q 017421          161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST  237 (372)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  237 (372)
                      .   ...|...+.+++|+||+++|++++.++   .|++||+.+++...+.                 +|...+.+++|+|
T Consensus       173 ~---l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-----------------~~~~~~~~~~~sp  232 (415)
T 2hqs_A          173 V---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-----------------SFPRHNGAPAFSP  232 (415)
T ss_dssp             E---EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-----------------CCSSCEEEEEECT
T ss_pred             E---EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee-----------------cCCCcccCEEEcC
Confidence            2   345667899999999999999999875   9999999988764322                 2445799999999


Q ss_pred             CCCEEE-EEeCCC--eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEEEecccc-----cCCC
Q 017421          238 DGRELV-AGSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVNSVLLL-----TRSI  306 (372)
Q Consensus       238 ~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~vwd~~~~-----~~~~  306 (372)
                      ||+.|+ +++.++  .|++||+.+++. ..+..|...+.+++|+ |+|+.|++++. ++  .|.+||+...     ..+.
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~  310 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG  310 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence            999887 666555  499999998876 5677788899999999 99999888876 45  6777787632     2455


Q ss_pred             CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      ..+.+++|+|+|++|+.+....   -+..|.+||+.+++.
T Consensus       311 ~~~~~~~~spdG~~l~~~~~~~---g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          311 SQNQDADVSSDGKFMVMVSSNG---GQQHIAKQDLATGGV  347 (415)
T ss_dssp             SEEEEEEECTTSSEEEEEEECS---SCEEEEEEETTTCCE
T ss_pred             CcccCeEECCCCCEEEEEECcC---CceEEEEEECCCCCE
Confidence            6788999999999998774210   035788888887765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=2.7e-20  Score=162.80  Aligned_cols=221  Identities=13%  Similarity=0.079  Sum_probs=158.0

Q ss_pred             CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccC-CcceEEEEECC
Q 017421          102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSL-RWTVTDTSLSP  179 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~-~~~v~~~~~~~  179 (372)
                      .+..+.+|+.... ....+..|...|.+++|+|++++|++++ ++.|++||+.+ +.....   ...+ ...+.+++|+|
T Consensus        20 ~~~~i~~~d~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           20 MRSSIEIFNIRTR-KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV---DTGFATICNNDHGISP   94 (297)
T ss_dssp             CCEEEEEEETTTT-EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---CCTTCCCBCSCCEECT
T ss_pred             cceeEEEEeCCCC-ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---ccccccccccceEECC
Confidence            3445556654333 3345667889999999999999999987 68999999988 644332   2233 35688999999


Q ss_pred             CCCEEEEEeC--CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEE
Q 017421          180 DQRHLVYASM--SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVY  254 (372)
Q Consensus       180 ~~~~l~~~~~--dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iw  254 (372)
                      ++++|++++.  ++  .|.+|++.++......                  +...+..++|+|++++|+ ++..++.+.+|
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~  156 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMT------------------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIY  156 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECC------------------SSSSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEee------------------cCCCccceEECCCCCEEEEEECCCCceEEE
Confidence            9999999983  33  4555555554432111                  112488899999999887 77789999999


Q ss_pred             ECCC-CeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEe
Q 017421          255 DLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       255 d~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +++. +.....+..+...+.+++|+ |+++.|++++ .++.+++|++.       .+..+...+..++|+|+|++|++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          157 SMDIDSGVETRLTHGEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             EEETTTCCEEECCCSSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCcceEcccCCCccccceEC-CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence            8632 23345666788899999999 8999887766 58999999875       2335566788999999999998775


Q ss_pred             eeeEEE-----eeceEEEeecccceE
Q 017421          326 ILVISI-----YSPNILLDNYFLLRT  346 (372)
Q Consensus       326 ~~~~~~-----~d~~i~lw~~~~~~~  346 (372)
                      ...-..     .+..|.+||+.+++.
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCc
Confidence            210000     136789999988765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=2e-20  Score=173.76  Aligned_cols=163  Identities=13%  Similarity=0.056  Sum_probs=128.1

Q ss_pred             CCCCceEEEEECCCCCEEE----EEeCCCcEEEEeCCCC--------eEEEEeeecccCCcceEEEEECCC-CCEEEEEe
Q 017421          122 QTTSRAYVSQFSADGSLFV----AGFQASQIRIYDVERG--------WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYAS  188 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~----~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~  188 (372)
                      .+...|.+++|+|++++|+    +|+.|+.|+|||+.+.        +.+.......+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4567899999999999999    7888999999998654        222233445678889999999997 88999999


Q ss_pred             CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 017421          189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH  268 (372)
Q Consensus       189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  268 (372)
                      .||.|++||++++.......                +|...|++++|+|+|++|++|+.||.|++||++ ++....+..|
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~----------------~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~  232 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATL----------------PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP  232 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEE----------------CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred             CCCeEEEEEcCCCcceeecc----------------CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence            99999999999874321111                366799999999999999999999999999998 5555555443


Q ss_pred             C-------CCeEEEEEeCCCCCEEEE-EeCCC------eEEEEecccc
Q 017421          269 T-------SDVNTVCFGDESGHLIYS-GSDDN------LCKVNSVLLL  302 (372)
Q Consensus       269 ~-------~~v~~~~~sp~~~~~l~s-~~~dg------~i~vwd~~~~  302 (372)
                      .       ..|.+++|+ +++.++++ .+.||      .+++|+++..
T Consensus       233 ~~~~~~~~~~v~~v~w~-~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWI-GTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTCCTTSCEEEEEEEEE-ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccCCCCceeEEEEEEe-cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            2       378999999 77777654 33443      3899998743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=6.2e-20  Score=166.15  Aligned_cols=186  Identities=13%  Similarity=0.086  Sum_probs=133.9

Q ss_pred             ccccCCceeEeeeeeCC-CCCccccCCCCceEEEEECCCCCEEEE--EeCCCcEEEEeCCCCeEE------------EE-
Q 017421           98 RFSAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWKI------------QK-  161 (372)
Q Consensus        98 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~------------~~-  161 (372)
                      .+...+..+.+|+.... .....+..   +...+++++  .++++  |+.||.|++||+.++...            .. 
T Consensus       113 ~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~  187 (355)
T 3vu4_A          113 IVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK  187 (355)
T ss_dssp             EEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------C
T ss_pred             EEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcc
Confidence            33444566667766554 33333333   445556666  56665  578999999999875410            00 


Q ss_pred             eeecccCCcceEEEEECCCCCEEEEEeCCCe-EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC
Q 017421          162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPI-VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR  240 (372)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  240 (372)
                      .....+|..+|.+++|+|++++|++++.|+. |++||+++++......  ..            .|...|.+++|+|+++
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g------------~h~~~v~~~~~s~~~~  253 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR--RG------------LDRADVVDMKWSTDGS  253 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE--CT------------TCCSCEEEEEECTTSC
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--cC------------CCCCcEEEEEECCCCC
Confidence            2346789999999999999999999999998 9999999987644332  00            1667999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeE--EEEe--------------------e-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Q 017421          241 ELVAGSSDDCIYVYDLEANKL--SLRI--------------------L-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVN  297 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~~~--~~~~--------------------~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vw  297 (372)
                      +|++++.|++|++||++.+..  ...+                    . .+......++|+ ++++.|++++.||.+++|
T Consensus       254 ~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~d~~~l~~~~~dg~~~~~  332 (355)
T 3vu4_A          254 KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-SESSLVVVWPHTRMIETF  332 (355)
T ss_dssp             EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-SSSEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-CCCCEEEEEeCCCeEEEE
Confidence            999999999999999976531  1111                    1 112234678999 999999999999999999


Q ss_pred             eccccc
Q 017421          298 SVLLLT  303 (372)
Q Consensus       298 d~~~~~  303 (372)
                      ++....
T Consensus       333 ~~~~~~  338 (355)
T 3vu4_A          333 KVVFDD  338 (355)
T ss_dssp             EEEEET
T ss_pred             EEEcCC
Confidence            987543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=2.2e-19  Score=178.10  Aligned_cols=207  Identities=13%  Similarity=-0.024  Sum_probs=157.2

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEeeecccCC----------------------cceEEE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ-AS-----QIRIYDVERGWKIQKDILAKSLR----------------------WTVTDT  175 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~----------------------~~v~~~  175 (372)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++..... ....+.                      ..+.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457999999999999999988 88     8999999988654332 122222                      347899


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCC---ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421          176 SLSPDQRHLVYASMSPIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY  252 (372)
Q Consensus       176 ~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~  252 (372)
                      +|+|||++|++++. +.|++||+.++   ....+.                 .|...+..++|+|||++|++++ ++.|+
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~  175 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-----------------HGEGFATDAKLSPKGGFVSFIR-GRNLW  175 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-----------------CSSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-----------------cCCcccccccCCCCCCEEEEEe-CCcEE
Confidence            99999999999886 99999999987   432222                 2445799999999999999887 46999


Q ss_pred             EEECCCCeEEEEeecCCCC----------------eEEEEEeCCCCCEEEEEeCCC------------------------
Q 017421          253 VYDLEANKLSLRILAHTSD----------------VNTVCFGDESGHLIYSGSDDN------------------------  292 (372)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~----------------v~~~~~sp~~~~~l~s~~~dg------------------------  292 (372)
                      +||+.+++.......+...                +.+++|+ |||++|++++.|+                        
T Consensus       176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             EEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            9999998776544433332                4789999 9999999987665                        


Q ss_pred             ---------eEEEEeccc-cc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          293 ---------LCKVNSVLL-LT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       293 ---------~i~vwd~~~-~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                               .|.+||+.+ ..        .+...+..++| |||++|+++....- ..+..|.+||..+++....+..|
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~  331 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRVLAHET  331 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEEEEEcC
Confidence                     788899865 32        35567899999 99999987642110 12577899999998876655544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.84  E-value=2.9e-19  Score=170.47  Aligned_cols=240  Identities=13%  Similarity=0.039  Sum_probs=168.2

Q ss_pred             cCCCCcc---ccCCceeEeeeee--CCCCCccccCCCCceEEEEECC----CCCEEEEEeC-CCcEEEEeCCCCeEEEEe
Q 017421           93 YSGRGRF---SAADCCHMLSRYL--PVNGPWPVDQTTSRAYVSQFSA----DGSLFVAGFQ-ASQIRIYDVERGWKIQKD  162 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-dg~i~vwd~~~~~~~~~~  162 (372)
                      +++++++   .+.+..+.+|+..  .......+. +...+..++|+|    ||+++++++. +++|.|||..+++.+...
T Consensus       186 ~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i  264 (543)
T 1nir_A          186 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV  264 (543)
T ss_dssp             ECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence            5666644   3444667777773  322223333 456789999999    9999988874 899999998877554432


Q ss_pred             eecc----------------------------------------------------cCCcceEEEEECCCCCEEEEEe-C
Q 017421          163 ILAK----------------------------------------------------SLRWTVTDTSLSPDQRHLVYAS-M  189 (372)
Q Consensus       163 ~~~~----------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~-~  189 (372)
                      ....                                                    .+...+..+.|+|+++++++++ .
T Consensus       265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~  344 (543)
T 1nir_A          265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN  344 (543)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG
T ss_pred             cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC
Confidence            2100                                                    0001133456777777665544 4


Q ss_pred             CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEe-CCCeEEEEECCC-------Ce
Q 017421          190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS-SDDCIYVYDLEA-------NK  260 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s-~dg~i~iwd~~~-------~~  260 (372)
                      ++.|.+||+.++++.........            .|......+ ++|+ +..++++. .|++|.+||+.+       ++
T Consensus       345 ~~~v~v~D~~tg~l~~~i~~g~~------------ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~  411 (543)
T 1nir_A          345 SNKVAVIDSKDRRLSALVDVGKT------------PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  411 (543)
T ss_dssp             GTEEEEEETTTTEEEEEEECSSS------------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             CCeEEEEECCCCeEEEeeccCCC------------CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCe
Confidence            67777777777765433321100            132222223 4787 66667775 579999999998       89


Q ss_pred             EEEEeecCCCCeEEEEEeCCCCCEEEEEe-------CCCeEEEEeccccc---------------CCCCCeeEEEeccCC
Q 017421          261 LSLRILAHTSDVNTVCFGDESGHLIYSGS-------DDNLCKVNSVLLLT---------------RSINPCNKYLFNPCN  318 (372)
Q Consensus       261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-------~dg~i~vwd~~~~~---------------~~~~~v~~~~~s~~g  318 (372)
                      ++.++..|...+..++++ |++++|++++       .+++|.+||+.+++               .+...+..+.|+|+|
T Consensus       412 ~v~~l~~~g~~~~~v~~~-pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g  490 (543)
T 1nir_A          412 KVAELQGQGGGSLFIKTH-PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  490 (543)
T ss_dssp             EEEEEECSCSCCCCEECC-TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred             EEEEEEcCCCCceEEEcC-CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence            999999998888999999 9999999987       26799999997443               335678999999999


Q ss_pred             CeEEEEeeeeEEEe-----eceEEEeecccceEEEEEeee
Q 017421          319 KYLIIYLILVISIY-----SPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       319 ~~l~~~~~~~~~~~-----d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      +.+.++.      |     |+.|.+||..+++++..+..+
T Consensus       491 ~~~~~s~------~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          491 DEVWFSV------WNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             SEEEEEE------ECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CEEEEEe------ecCCCCCCeEEEEECCCceEEEeecCC
Confidence            9998774      5     699999999999999887754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=1.1e-18  Score=156.17  Aligned_cols=219  Identities=13%  Similarity=0.071  Sum_probs=151.0

Q ss_pred             CCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCC-CcEEEEeCC--CCeEEEEeeecccCCcceEEEE
Q 017421          102 ADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVE--RGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      .+..+.+|+......  ......+...+.+++|+|++++|++++.+ +.|.+|++.  ++..... .....+. .+..++
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~   90 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALPG-SLTHIS   90 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECSS-CCSEEE
T ss_pred             CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-cccccCC-CCcEEE
Confidence            355667777653221  22224577789999999999999888876 899999997  4432211 1122222 688999


Q ss_pred             ECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 017421          177 LSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVY  254 (372)
Q Consensus       177 ~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iw  254 (372)
                      |+|+++++++++. ++.|.+||+..+..........              ....+.+++|+|+++++++++ .++.|.+|
T Consensus        91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  156 (343)
T 1ri6_A           91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLF  156 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence            9999998877765 8899999995332211111111              112578899999999888777 88999999


Q ss_pred             ECCC-CeEEE----Eeec-CCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccc-------cc---------CCCCCeeE
Q 017421          255 DLEA-NKLSL----RILA-HTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLL-------LT---------RSINPCNK  311 (372)
Q Consensus       255 d~~~-~~~~~----~~~~-~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~-------~~---------~~~~~v~~  311 (372)
                      |+.+ ++...    .+.. ....+.+++|+ |+++++++++ .++.|.+||+..       ..         .....+..
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EecCCCceeeecccccccCCCCCcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            9987 64432    2232 34578899999 8998776555 789999999852       10         01234568


Q ss_pred             EEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          312 YLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      ++|+|+|++|+++..     .++.|.+|++.
T Consensus       236 i~~s~dg~~l~v~~~-----~~~~i~v~d~~  261 (343)
T 1ri6_A          236 IHITPDGRHLYACDR-----TASLITVFSVS  261 (343)
T ss_dssp             EEECTTSSEEEEEET-----TTTEEEEEEEC
T ss_pred             eEECCCCCEEEEEec-----CCCEEEEEEEc
Confidence            999999998876531     36788888887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=7.6e-19  Score=156.90  Aligned_cols=200  Identities=12%  Similarity=0.015  Sum_probs=150.0

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeeccc--CCcceEEEEECCCCCEEEEEe------------CC
Q 017421          126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYAS------------MS  190 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~------------~d  190 (372)
                      .+..++|+|+++.++ ++..++.|.+||+.+++.+........  +...+..++|+|++++++++.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998764 555678999999998866554322110  122577899999999998886            57


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-  269 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-  269 (372)
                      +.|.+||+.+++.......                 ...+..++|+|++++|+++  ++.|.+||+.+++....+..+. 
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~  175 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-----------------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-----------------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred             ceEEEEECCCCcEEEEEeC-----------------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence            9999999988775433221                 1246678899999988777  5789999998887665443221 


Q ss_pred             -----------------------------------------------------------------CCeEEEEEeCCCCCE
Q 017421          270 -----------------------------------------------------------------SDVNTVCFGDESGHL  284 (372)
Q Consensus       270 -----------------------------------------------------------------~~v~~~~~sp~~~~~  284 (372)
                                                                                       ..+.+++|+ |++++
T Consensus       176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~  254 (337)
T 1pby_B          176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN-PAKTR  254 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC-TTSSE
T ss_pred             CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC-CCCCE
Confidence                                                                             234568999 89999


Q ss_pred             EEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          285 IYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       285 l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      ++++  ++.|.+||+.+.+     .....+.+++|+|+|++|+++.      .++.|.+||+.+++.+..+..+
T Consensus       255 l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~------~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          255 AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG------ALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES------BSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc------CCCcEEEEECcCCcEEEEEEcC
Confidence            9888  7999999987432     2345678999999999888874      5899999999999988877554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.84  E-value=1.8e-18  Score=154.50  Aligned_cols=218  Identities=8%  Similarity=0.023  Sum_probs=153.2

Q ss_pred             CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeE-EEEeeecccCCcceEEEEECC
Q 017421          102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+..+.+|+....+....+..+...+ +++|+|+++++++++. ++.|.+||+.++.. ...   ...+..+..+++|+|
T Consensus        18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~s~   93 (331)
T 3u4y_A           18 HLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---IQEGQSSMADVDITP   93 (331)
T ss_dssp             GGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE---EEECSSCCCCEEECT
T ss_pred             CCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe---cccCCCCccceEECC
Confidence            34456666655554444455556667 9999999997766655 88999999988865 332   223333444499999


Q ss_pred             CCCEEEEEeCCC---eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCe-EEEE
Q 017421          180 DQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDC-IYVY  254 (372)
Q Consensus       180 ~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~-i~iw  254 (372)
                      ++++++++..++   .|.+||+.+++......                 ....+..++|+|+|++++ +...++. |.+|
T Consensus        94 dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-----------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~  156 (331)
T 3u4y_A           94 DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-----------------IPYDAVGIAISPNGNGLILIDRSSANTVRRF  156 (331)
T ss_dssp             TSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-----------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred             CCCEEEEecCCCCcccEEEEECCCCCeEEEEE-----------------CCCCccceEECCCCCEEEEEecCCCceEEEE
Confidence            999999555553   89999999887644322                 112568999999998555 4455577 9999


Q ss_pred             ECCCCeEE----EEeecCCCCeEEEEEeCCCCCEEEEE-eCCCeEEEEecccccC--------CCCCeeEEEeccCCCeE
Q 017421          255 DLEANKLS----LRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVNSVLLLTR--------SINPCNKYLFNPCNKYL  321 (372)
Q Consensus       255 d~~~~~~~----~~~~~~~~~v~~~~~sp~~~~~l~s~-~~dg~i~vwd~~~~~~--------~~~~v~~~~~s~~g~~l  321 (372)
                      ++.....+    .........+..++|+ |+|++++++ ..++.|++||+.+...        ....+..++|+|+|+++
T Consensus       157 ~~~~~g~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          157 KIDADGVLFDTGQEFISGGTRPFNITFT-PDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTV  235 (331)
T ss_dssp             EECTTCCEEEEEEEEECSSSSEEEEEEC-TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEE
T ss_pred             EECCCCcEeecCCccccCCCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEE
Confidence            98754322    1222345568999999 999866555 4689999999874332        34567889999999988


Q ss_pred             EEEeeeeEEEeeceEEEeecccceE
Q 017421          322 IIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +++..     .++.|.+||..+++.
T Consensus       236 ~v~~~-----~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          236 YVLTE-----STVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEECS-----SEEEEEEEETTTTEE
T ss_pred             EEEEc-----CCCEEEEEECCCCce
Confidence            77642     256688899988876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=2.2e-19  Score=177.59  Aligned_cols=219  Identities=11%  Similarity=0.064  Sum_probs=153.0

Q ss_pred             cCCceeEeeeeeCCCCCccccCCCC---ceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEeeecccC
Q 017421          101 AADCCHMLSRYLPVNGPWPVDQTTS---RAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSL  168 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~  168 (372)
                      +.+..+.+|+.........+..|..   .|.+++|||||++|++++.+         +.|.+||+.++.. ........+
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~  112 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS  112 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc
Confidence            3455778888777766666666654   49999999999999998764         7888999998754 222223344


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCC----CCccccEEEEEEcCCCCEEEE
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      ...+..++|+|||+.|++++. +.|++||+.+++...+....  .....+....+    ..-...+..++|+|||+.|++
T Consensus       113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~--~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~  189 (723)
T 1xfd_A          113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG--KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY  189 (723)
T ss_dssp             SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC--BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred             cccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC--CCCceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence            445889999999999999886 79999999988764433211  00000000000    000013478999999999998


Q ss_pred             EeCCC----------------------------------eEEEEECCCCeEEEEeecC------CCCeEEEEEeCCCCCE
Q 017421          245 GSSDD----------------------------------CIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHL  284 (372)
Q Consensus       245 ~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~  284 (372)
                      ++.++                                  .|++||+.+++....+..+      ...+..++|+ |||++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S-pDg~~  268 (723)
T 1xfd_A          190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKV  268 (723)
T ss_dssp             EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEE
T ss_pred             EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe-CCCeE
Confidence            87543                                  7999999988765666544      5678999999 99998


Q ss_pred             EEEEeC----CCeEEEEeccccc-------CCCCCe----eEEEeccCCCeEEEE
Q 017421          285 IYSGSD----DNLCKVNSVLLLT-------RSINPC----NKYLFNPCNKYLIIY  324 (372)
Q Consensus       285 l~s~~~----dg~i~vwd~~~~~-------~~~~~v----~~~~~s~~g~~l~~~  324 (372)
                      |++.+.    +..|++||+.+..       .+...+    ..++|+|||+.|+..
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            877653    3579999986432       222333    378999999988764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=7.2e-19  Score=167.75  Aligned_cols=196  Identities=13%  Similarity=0.045  Sum_probs=155.5

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC--CCCceeeecc
Q 017421          131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV--GSGTMESLAN  208 (372)
Q Consensus       131 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~  208 (372)
                      +|+|++.++++++.|++|.+||..+++.+.....  ++  .+..++|+||+++|++++.++.|.+||+  .+++......
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            3889999999999999999999999877655321  32  2889999999999999999999999999  6766533222


Q ss_pred             eeecccccceeccCCCCccccEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCeEEEEeecC-----------CCCe
Q 017421          209 VTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSS-DDCIYVYDLEANKLSLRILAH-----------TSDV  272 (372)
Q Consensus       209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp----~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v  272 (372)
                                       +...+..++|+|    ||+++++++. +++|.+||..+++++.++..+           ...+
T Consensus       220 -----------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          220 -----------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             -----------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             -----------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence                             112578999999    9999988874 899999999999988887642           2378


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      .++.++|..+.++++...++.|.+||+....       .+...+..+.|+|+|++++++..     .+++|.+||..+++
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~-----~~~~v~v~D~~tg~  357 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN-----NSNKVAVIDSKDRR  357 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG-----GGTEEEEEETTTTE
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec-----CCCeEEEEECCCCe
Confidence            8999994345566777789999999986422       34556788999999998876631     37889999999999


Q ss_pred             EEEEEee
Q 017421          346 TFYSFMV  352 (372)
Q Consensus       346 ~~~~~~~  352 (372)
                      .+..+.+
T Consensus       358 l~~~i~~  364 (543)
T 1nir_A          358 LSALVDV  364 (543)
T ss_dssp             EEEEEEC
T ss_pred             EEEeecc
Confidence            8877664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=9.7e-20  Score=180.14  Aligned_cols=204  Identities=11%  Similarity=0.039  Sum_probs=151.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc---ceEEEEECCCCCEEEEEeCC---------CeE
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMS---------PIV  193 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i  193 (372)
                      .+.+++|+|||+++++ +.||.|++||+.+++....   ...+..   .|.+++|+|||++|++++.+         +.+
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~---~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL---IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE---ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE---eccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            4677899999997766 7899999999998855433   233332   48999999999999999764         788


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe-
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-  272 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-  272 (372)
                      ++||+.+++...+...              .+|...+..++|||||+.|+.++. +.|++||+.+++.......+...+ 
T Consensus        94 ~~~d~~~~~~~~l~~~--------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~  158 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPP--------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI  158 (723)
T ss_dssp             EEEESSSCCCEECCCT--------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred             EEEECCCCceEeccCC--------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence            8999998875322211              124445888999999999999886 899999999887766555443333 


Q ss_pred             -----------------EEEEEeCCCCCEEEEEeCCC----------------------------------eEEEEeccc
Q 017421          273 -----------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVNSVLL  301 (372)
Q Consensus       273 -----------------~~~~~sp~~~~~l~s~~~dg----------------------------------~i~vwd~~~  301 (372)
                                       .+++|+ |||+.|++++.|+                                  .|++||+.+
T Consensus       159 ~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~  237 (723)
T 1xfd_A          159 YNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG  237 (723)
T ss_dssp             EEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred             ECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence                             789999 9999999887543                                  799999864


Q ss_pred             cc------C------CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          302 LT------R------SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       302 ~~------~------~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      ..      .      +...+..++|+|||+++++.....  ..+..|.+||+.+++....+.
T Consensus       238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~i~~~d~~~g~~~~~~~  297 (723)
T 1xfd_A          238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA--QNVSILTLCDATTGVCTKKHE  297 (723)
T ss_dssp             SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT--SCEEEEEEEETTTCCEEEEEE
T ss_pred             CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC--CCeEEEEEEeCCCCcceEEEE
Confidence            32      1      245688999999999887663211  124678899998887655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=5.8e-18  Score=152.43  Aligned_cols=225  Identities=14%  Similarity=0.093  Sum_probs=149.8

Q ss_pred             ceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeec--cc-------CCcc
Q 017421          104 CCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA--KS-------LRWT  171 (372)
Q Consensus       104 ~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~--~~-------~~~~  171 (372)
                      ..+.+|+......  ...+..+...+..++|+|+|++|++++ .++.|.+|++............  .+       ....
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~  142 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH  142 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence            4566777643321  122234677889999999999888887 6789999999632121111111  11       1124


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECC-CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE-EeCCC
Q 017421          172 VTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDD  249 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-~s~dg  249 (372)
                      +.+++|+|+++++++...++.|.+|++. ++...........             ....+..++|+|||+++++ ...++
T Consensus       143 ~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------------~g~~p~~~~~spdg~~l~v~~~~~~  209 (347)
T 3hfq_A          143 IHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-------------AGFGPRHLVFSPDGQYAFLAGELSS  209 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------------TTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-------------CCCCCceEEECCCCCEEEEEeCCCC
Confidence            7889999999966666668899999998 4443222111110             1125778999999996655 55678


Q ss_pred             eEEEEECCC--CeE--EEEeecCC------CCeEEEEEeCCCCCEE-EEEeCCCeEEEEecc---cc------cCCCCCe
Q 017421          250 CIYVYDLEA--NKL--SLRILAHT------SDVNTVCFGDESGHLI-YSGSDDNLCKVNSVL---LL------TRSINPC  309 (372)
Q Consensus       250 ~i~iwd~~~--~~~--~~~~~~~~------~~v~~~~~sp~~~~~l-~s~~~dg~i~vwd~~---~~------~~~~~~v  309 (372)
                      .|.+|++..  ++.  +..+....      ..+..++|+ |+|++| ++...++.|.+|++.   .+      ..+...+
T Consensus       210 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s-pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~  288 (347)
T 3hfq_A          210 QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS-HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP  288 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC-TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC
T ss_pred             EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC-CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc
Confidence            999999874  543  23333222      348899999 999977 455678999999986   11      1345568


Q ss_pred             eEEEeccCCCeEEEEeeeeEEEeeceEEEe--ecccceEE
Q 017421          310 NKYLFNPCNKYLIIYLILVISIYSPNILLD--NYFLLRTF  347 (372)
Q Consensus       310 ~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw--~~~~~~~~  347 (372)
                      ..++|+|+|++|+++..     -++.+.+|  |..+++..
T Consensus       289 ~~~~~spdg~~l~v~~~-----~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          289 RDFDLDPTEAFVVVVNQ-----NTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CEEEECTTSSEEEEEET-----TTTEEEEEEECTTTCCEE
T ss_pred             CeEEECCCCCEEEEEEc-----CCCcEEEEEEeCCCCeEE
Confidence            89999999999887741     24778888  55566644

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=1.4e-17  Score=149.77  Aligned_cols=207  Identities=10%  Similarity=0.065  Sum_probs=153.8

Q ss_pred             CCceEEEEECCCCCEEEE-EeCCCcEEEEeCCCCeEEEEeeecccC------CcceEEEEECCCCCEEEEEe--CCCeEE
Q 017421          124 TSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYAS--MSPIVH  194 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~--~dg~i~  194 (372)
                      ...+.+++|+|+|+++++ ...++.|.+||+.+++.+.........      ...+.++.|+|+++++++++  .++.|.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            445778999999996554 555799999999988765543321111      01268899999999887776  478899


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec----CCC
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----HTS  270 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~  270 (372)
                      +||..+++.......                +...+..++|+|+++++++++.++.|.+||+.+++....+..    +..
T Consensus       168 ~~d~~~~~~~~~~~~----------------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  231 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQN----------------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH  231 (353)
T ss_dssp             EEETTTTEEEEEECC----------------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC
T ss_pred             EEcCCCCceEEEecC----------------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc
Confidence            999998876443321                112467889999999999999999999999999998877764    455


Q ss_pred             CeEEEEEeCCCCCEEEEEeC-CCeEEEEecccccC----CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          271 DVNTVCFGDESGHLIYSGSD-DNLCKVNSVLLLTR----SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      .+..++|+ |+++.+++++. ++.|.+||+.+.+.    .......++|+|+|++++++..     .++.|.+||..+++
T Consensus       232 ~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~-----~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          232 FFINISLD-TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHR-----QAGKVSVIDAKSYK  305 (353)
T ss_dssp             CEEEEEEE-TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEET-----TTTEEEEEETTTTE
T ss_pred             ccceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEEC-----CCCeEEEEECCCCe
Confidence            68889999 88887776664 59999999874320    1112367999999997776631     36889999999888


Q ss_pred             EEEEEee
Q 017421          346 TFYSFMV  352 (372)
Q Consensus       346 ~~~~~~~  352 (372)
                      .+..+..
T Consensus       306 ~~~~~~~  312 (353)
T 3vgz_A          306 VVKTFDT  312 (353)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8776644

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=9.1e-19  Score=153.07  Aligned_cols=210  Identities=14%  Similarity=0.022  Sum_probs=149.3

Q ss_pred             cCCCCcc--ccCCceeEeeeeeC-CCCCccccCC-CCceEEEEECCCCCEEEEEeC--CC--cEEEEeCCCCeEEEEeee
Q 017421           93 YSGRGRF--SAADCCHMLSRYLP-VNGPWPVDQT-TSRAYVSQFSADGSLFVAGFQ--AS--QIRIYDVERGWKIQKDIL  164 (372)
Q Consensus        93 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~--dg--~i~vwd~~~~~~~~~~~~  164 (372)
                      +++++.+  ...+..+.+|+... .........+ ...+.+++|+|++++|++++.  ++  .|.++++.++.. ..   
T Consensus        49 ~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~---  124 (297)
T 2ojh_A           49 WSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RL---  124 (297)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EE---
T ss_pred             ECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EE---
Confidence            3444432  33455677777665 4444444444 477899999999999999883  34  444455555432 11   


Q ss_pred             cccCCcceEEEEECCCCCEEE-EEeCCCeEEEEECC--CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE
Q 017421          165 AKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  241 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  241 (372)
                      ...+. .+..++|+|+++.|+ ++..++.+.+|++.  ++......                 .+...+.+++|+|++++
T Consensus       125 ~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          125 MTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-----------------HGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             CCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-----------------CSSSCEEEEEECTTSSE
T ss_pred             eecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-----------------cCCCccccceECCCCCE
Confidence            22222 488899999999887 67788989999864  33322111                 23457899999999998


Q ss_pred             EEEEe-CCCeEEEEECC-CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-----------CeEEEEecccc------
Q 017421          242 LVAGS-SDDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-----------NLCKVNSVLLL------  302 (372)
Q Consensus       242 l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d-----------g~i~vwd~~~~------  302 (372)
                      |++++ .++.+.+|++. .+.....+..|...+.+++|+ |++++|++++.+           +.|.+||+...      
T Consensus       187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          187 IYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS-PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC-TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC-CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            87766 48889999886 455667777788889999999 999999888765           56999998632      


Q ss_pred             --cCCCCCeeEEEeccCCCeEEEEe
Q 017421          303 --TRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       303 --~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                        ..+...+..++|+|+|++|++++
T Consensus       266 ~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          266 DLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             EEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             ccCCCCcccccceECCCCCEEEEEE
Confidence              15667889999999999998775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=4.6e-18  Score=152.68  Aligned_cols=225  Identities=11%  Similarity=0.003  Sum_probs=156.6

Q ss_pred             CceeEeeeeeCCCCCccccCCC-CceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccC---CcceEEEEE
Q 017421          103 DCCHMLSRYLPVNGPWPVDQTT-SRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSL  177 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~v~~~~~  177 (372)
                      +..+.+|+.........+..+. ..+..++|+|++++++ ++..++.|.+||+.+++...........   ...+..++|
T Consensus        20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~   99 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI   99 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEE
Confidence            3445555543333222333222 2578899999998665 5556899999999988665443221100   223788999


Q ss_pred             CCCCCEEEEEeCC------------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE
Q 017421          178 SPDQRHLVYASMS------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  245 (372)
Q Consensus       178 ~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~  245 (372)
                      +|+++++++++.+            +.|.+||+.+++.........              +...+.+++|+|+|+ ++++
T Consensus       100 spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~-l~~~  164 (349)
T 1jmx_B          100 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------------MPRQVYLMRAADDGS-LYVA  164 (349)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------------CCSSCCCEEECTTSC-EEEE
T ss_pred             CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--------------CCCcccceeECCCCc-EEEc
Confidence            9999999998865            899999998765432222111              112578899999999 5555


Q ss_pred             eCCCeEEEEECCCCeEEEEeecCC--------------------------------------------------------
Q 017421          246 SSDDCIYVYDLEANKLSLRILAHT--------------------------------------------------------  269 (372)
Q Consensus       246 s~dg~i~iwd~~~~~~~~~~~~~~--------------------------------------------------------  269 (372)
                      +  +.|.+||+.+++....+..+.                                                        
T Consensus       165 ~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  242 (349)
T 1jmx_B          165 G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT  242 (349)
T ss_dssp             S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred             c--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC
Confidence            4  349999999888766654321                                                        


Q ss_pred             ------------CCeEEEEEeCC-CCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          270 ------------SDVNTVCFGDE-SGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       270 ------------~~v~~~~~sp~-~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                                  ..+.+++|+ | ++++++++  ++.|.+||+.+.+     .....+.+++|+|+|++|+++.      
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~s-p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~------  313 (349)
T 1jmx_B          243 GKTHTQEFADLTELYFTGLRS-PKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG------  313 (349)
T ss_dssp             CCEEEEEEEECSSCEEEEEEC-SSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES------
T ss_pred             CcEEecccccCCCcceeeEec-CCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec------
Confidence                        134567788 7 99998888  8899999997433     2344578999999999888764      


Q ss_pred             eeceEEEeecccceEEEEEeee
Q 017421          332 YSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       332 ~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      .++.|.+||..+++.+..+...
T Consensus       314 ~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          314 TFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             BSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEeccccceeeeeecC
Confidence            4789999999999988877553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=2e-17  Score=148.77  Aligned_cols=212  Identities=10%  Similarity=0.029  Sum_probs=159.0

Q ss_pred             CCceEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ-------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHI  195 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v  195 (372)
                      ...+..++|+|+++++++++.       ++.|.+||..+++.+.....    ...+..+.|+|++++++++ ..++.|.+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~  115 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTVNSAVTA  115 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            456889999999998888774       56899999998866655332    2247789999999966555 55799999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCeE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVN  273 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~  273 (372)
                      ||..+++............       ...+....+.+++|+|+++++++++  .++.|.+||+.+++....+..+...+.
T Consensus       116 ~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKR-------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST  188 (353)
T ss_dssp             EETTTCCEEEEEESCCCCC-------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred             EeCCCCeeEEEEecCCCcc-------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence            9999988644433211100       0000111378899999999887765  478899999999998888875666788


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          274 TVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                      +++|+ |+++.+++++.++.|.+||+.+.+          .+...+..++|+|+|++++++..     .++.|.+||..+
T Consensus       189 ~~~~s-~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~~~d~~~  262 (353)
T 3vgz_A          189 GLALD-SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-----KAAEVLVVDTRN  262 (353)
T ss_dssp             CCEEE-TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-----SSSEEEEEETTT
T ss_pred             eEEEC-CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-----CCCEEEEEECCC
Confidence            99999 999999999999999999987432          23445778999999998877641     247889999998


Q ss_pred             ceEEEEEee
Q 017421          344 LRTFYSFMV  352 (372)
Q Consensus       344 ~~~~~~~~~  352 (372)
                      ++.+..+..
T Consensus       263 ~~~~~~~~~  271 (353)
T 3vgz_A          263 GNILAKVAA  271 (353)
T ss_dssp             CCEEEEEEC
T ss_pred             CcEEEEEEc
Confidence            887766643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.81  E-value=1.8e-17  Score=148.23  Aligned_cols=218  Identities=16%  Similarity=0.168  Sum_probs=146.0

Q ss_pred             ceeEeeeeeCCCCC----ccccCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          104 CCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       104 ~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      ..+.+|...+....    ..+.. ...+..++|+|++++|++++. ++.|.+|++..+........... ...+.+++|+
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s  137 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS  137 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC
T ss_pred             CeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC
Confidence            56667776532211    12222 337889999999998876655 78899999954322222222222 2358899999


Q ss_pred             CCCCEEEEEe-CCCeEEEEECCC-Cceeeec--ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEE
Q 017421          179 PDQRHLVYAS-MSPIVHIVDVGS-GTMESLA--NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYV  253 (372)
Q Consensus       179 ~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~i  253 (372)
                      |+++++++++ .++.|.+||+.+ ++.....  ....             .....+..++|+|+++++++++ .++.|.+
T Consensus       138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~  204 (343)
T 1ri6_A          138 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT-------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDV  204 (343)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC-------------STTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc-------------CCCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence            9999888887 799999999987 5443222  1111             0123678899999999776554 7899999


Q ss_pred             EECCC--CeE--EEEee---cC---CCCeEEEEEeCCCCCEEEEE-eCCCeEEEEecc----ccc-----CCCCCeeEEE
Q 017421          254 YDLEA--NKL--SLRIL---AH---TSDVNTVCFGDESGHLIYSG-SDDNLCKVNSVL----LLT-----RSINPCNKYL  313 (372)
Q Consensus       254 wd~~~--~~~--~~~~~---~~---~~~v~~~~~sp~~~~~l~s~-~~dg~i~vwd~~----~~~-----~~~~~v~~~~  313 (372)
                      ||+..  ++.  ...+.   ..   ...+.+++|+ |++++|+++ ..++.|.+||+.    ...     .....+..++
T Consensus       205 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s-~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  283 (343)
T 1ri6_A          205 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT-PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFN  283 (343)
T ss_dssp             EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEE
T ss_pred             EEecCCCCcEEEEeeccccCccccccCCccceEEC-CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEE
Confidence            99953  432  22222   11   2356789999 889877754 478999999997    211     1223488999


Q ss_pred             eccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          314 FNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       314 ~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      |+|+|++|+++..     .++.+.+|++.
T Consensus       284 ~s~dg~~l~~~~~-----~~~~v~v~~~d  307 (343)
T 1ri6_A          284 VDHSGKYLIAAGQ-----KSHHISVYEIV  307 (343)
T ss_dssp             ECTTSSEEEEECT-----TTCEEEEEEEE
T ss_pred             ECCCCCEEEEecC-----CCCeEEEEEEc
Confidence            9999998888742     25778888544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.80  E-value=7.3e-18  Score=150.53  Aligned_cols=221  Identities=12%  Similarity=0.027  Sum_probs=152.1

Q ss_pred             CceeEeeeeeCCCC-CccccCCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          103 DCCHMLSRYLPVNG-PWPVDQTTSRAYVSQFSADGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       103 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      +..+.+++...... ...+..+..+..+++|+|+|++|+++..++   .|.+||+.+++.+....   . ...+.+++|+
T Consensus        61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~---~-~~~~~~~~~s  136 (331)
T 3u4y_A           61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP---I-PYDAVGIAIS  136 (331)
T ss_dssp             TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE---C-CTTEEEEEEC
T ss_pred             CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE---C-CCCccceEEC
Confidence            34555665554444 444555666666699999999998555543   89999999886655422   1 2246899999


Q ss_pred             CCCCEEEEE-eCCCe-EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE-EeCCCeEEEEE
Q 017421          179 PDQRHLVYA-SMSPI-VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYD  255 (372)
Q Consensus       179 ~~~~~l~~~-~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-~s~dg~i~iwd  255 (372)
                      |++++++++ ..++. |.+|++..............            .....+..++|+|+|+++++ +..++.|.+||
T Consensus       137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  204 (331)
T 3u4y_A          137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI------------SGGTRPFNITFTPDGNFAFVANLIGNSIGILE  204 (331)
T ss_dssp             TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE------------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc------------cCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence            999866555 55578 99999986543211110000            01235789999999996654 45689999999


Q ss_pred             CCCCeE---EEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecccccC------------CCCC---eeEEEecc
Q 017421          256 LEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLTR------------SINP---CNKYLFNP  316 (372)
Q Consensus       256 ~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~~------------~~~~---v~~~~~s~  316 (372)
                      +.+++.   +..+.. ...+..++|+ |+|+++++++ .++.|.+||+.+.+.            ...+   +..++|+|
T Consensus       205 ~~~~~~~~~~~~~~~-~~~~~~~~~s-pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  282 (331)
T 3u4y_A          205 TQNPENITLLNAVGT-NNLPGTIVVS-RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK  282 (331)
T ss_dssp             CSSTTSCEEEEEEEC-SSCCCCEEEC-TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT
T ss_pred             CCCCcccceeeeccC-CCCCceEEEC-CCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC
Confidence            998887   777764 4667899999 9999776654 578899999874221            1112   24589999


Q ss_pred             CCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          317 CNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +|++|+++..     .++.|.+||+.....
T Consensus       283 dg~~l~v~~~-----~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          283 TETKLFISAN-----ISRELKVFTISGKVV  307 (331)
T ss_dssp             TSSEEEEEET-----TTTEEEEEETTSCEE
T ss_pred             CCCEEEEecC-----CCCcEEEEEecCCcc
Confidence            9999876642     256899999876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=3.2e-17  Score=147.49  Aligned_cols=227  Identities=11%  Similarity=0.038  Sum_probs=149.3

Q ss_pred             CceeEeeeeeCCCCCc---cccCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421          103 DCCHMLSRYLPVNGPW---PVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      ++.+.+|.+.......   ....+...+..++|+|||+ |++++.   ++.|.+|++.++... .......+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-KLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-EEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-EeeeeecCCCCCEEEE
Confidence            4556677776543322   2234556788899999999 555443   689999999776432 2122223445688999


Q ss_pred             ECCCCCEEEEEe-CCCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 017421          177 LSPDQRHLVYAS-MSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  254 (372)
Q Consensus       177 ~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iw  254 (372)
                      |+|++++|++++ .++.|.+|++.. +.............+    +. ...+...+.+++|+|+|+++++...++.|.+|
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~----p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~  167 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHG----PR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY  167 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCC----SS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCC----CC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence            999999988887 679999999963 333222221110000    00 01123468899999999966666778899999


Q ss_pred             ECC-CCeEE--EEeec-CCCCeEEEEEeCCCCCEEEE-EeCCCeEEEEeccc--c--------cCCC------CCeeEEE
Q 017421          255 DLE-ANKLS--LRILA-HTSDVNTVCFGDESGHLIYS-GSDDNLCKVNSVLL--L--------TRSI------NPCNKYL  313 (372)
Q Consensus       255 d~~-~~~~~--~~~~~-~~~~v~~~~~sp~~~~~l~s-~~~dg~i~vwd~~~--~--------~~~~------~~v~~~~  313 (372)
                      |+. +++..  ..+.. ....+..++|+ |+|+++++ ...++.|.+|++..  .        ....      ..+..++
T Consensus       168 ~~~~~g~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  246 (347)
T 3hfq_A          168 NVSDAGQLSEQSVLTMEAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR  246 (347)
T ss_dssp             EECTTSCEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred             EECCCCcEEEeeeEEcCCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence            998 55432  22222 23367889999 99996665 45688999999763  1        1111      3478899


Q ss_pred             eccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          314 FNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       314 ~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      |+|||++|+++..     .++.|.+|++.
T Consensus       247 ~spdG~~l~v~~~-----~~~~v~v~~~~  270 (347)
T 3hfq_A          247 LSHDGHFLYVSNR-----GYNTLAVFAVT  270 (347)
T ss_dssp             ECTTSCEEEEEEE-----TTTEEEEEEEC
T ss_pred             ECCCCCEEEEEeC-----CCCEEEEEEEC
Confidence            9999998866531     36778888876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.80  E-value=5.7e-18  Score=167.92  Aligned_cols=228  Identities=11%  Similarity=0.053  Sum_probs=163.8

Q ss_pred             CccCCCCcc--ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc
Q 017421           91 GNYSGRGRF--SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK  166 (372)
Q Consensus        91 ~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  166 (372)
                      ..+++++.+  ......+.+|+.....  ....+..|...+..++|||||++|++++. +.|++||+.++.....   ..
T Consensus       114 ~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~---~~  189 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL---TA  189 (741)
T ss_dssp             CEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC---CC
T ss_pred             eEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe---cc
Confidence            345666643  2333566677665542  45667788889999999999999998875 6899999998754432   11


Q ss_pred             cCCc----------------ceEEEEECCCCCEEEEEeCCC---------------------------------eEEEEE
Q 017421          167 SLRW----------------TVTDTSLSPDQRHLVYASMSP---------------------------------IVHIVD  197 (372)
Q Consensus       167 ~~~~----------------~v~~~~~~~~~~~l~~~~~dg---------------------------------~i~vwd  197 (372)
                      .+..                .+.++.|+|||++|++++.|+                                 .|++||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            1111                147799999999999987765                                 788899


Q ss_pred             CCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeEEEEeecCCC-
Q 017421          198 VGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLEANKLSLRILAHTS-  270 (372)
Q Consensus       198 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~-  270 (372)
                      +.+ ++.......              ..|...+..++| |||++|++++.     +..|++||+.+++....+..+.. 
T Consensus       270 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~  334 (741)
T 2ecf_A          270 PAEQAQTQWIDLG--------------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT  334 (741)
T ss_dssp             SSTTCCCEEECCC--------------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred             CCCCCceEEecCC--------------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence            988 764332211              024568999999 99999987654     56799999999987776665543 


Q ss_pred             ---CeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEE-EeccCCCeEEEEeeeeEEEeec--eEEE
Q 017421          271 ---DVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKY-LFNPCNKYLIIYLILVISIYSP--NILL  338 (372)
Q Consensus       271 ---~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~-~~s~~g~~l~~~~~~~~~~~d~--~i~l  338 (372)
                         .+..++|+ |+|+++++++.||.++||.+.      .+..+...+..+ .|+|+|+.|+....     .++  .++|
T Consensus       335 ~~~~~~~~~~s-pdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~-----~~~~~~~~l  408 (741)
T 2ecf_A          335 WVPLHNSLRFL-DDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAG-----IESARESQI  408 (741)
T ss_dssp             CCCCCSCCEEC-TTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEEC-----SSCTTCBEE
T ss_pred             cCCcCCceEEC-CCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEe-----CCCCceEEE
Confidence               45689999 899999999999988888764      233566677777 59999998765531     233  6777


Q ss_pred             eeccc
Q 017421          339 DNYFL  343 (372)
Q Consensus       339 w~~~~  343 (372)
                      |++..
T Consensus       409 ~~~~~  413 (741)
T 2ecf_A          409 YAVPL  413 (741)
T ss_dssp             EEEET
T ss_pred             EEEEc
Confidence            77754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=1.9e-17  Score=163.31  Aligned_cols=238  Identities=15%  Similarity=0.101  Sum_probs=162.3

Q ss_pred             ccCCCCcc--ccCCceeEeeeeeC-----CCCCccccCCCCc--------------eEEEEECCCCCEEEEEe-------
Q 017421           92 NYSGRGRF--SAADCCHMLSRYLP-----VNGPWPVDQTTSR--------------AYVSQFSADGSLFVAGF-------  143 (372)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------v~~~~~s~~~~~l~~~~-------  143 (372)
                      .+++++..  ...+..+.+|+...     .........+...              +.+++|+|||++|++++       
T Consensus       127 ~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~  206 (706)
T 2z3z_A          127 DFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK  206 (706)
T ss_dssp             EECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC
T ss_pred             cCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc
Confidence            35666532  34456677777655     4333223333332              58899999999999987       


Q ss_pred             --------------------------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----e
Q 017421          144 --------------------------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----I  192 (372)
Q Consensus       144 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~  192 (372)
                                                .+..|++||+.++..... .....+...+..++|+||++.|++++.++     .
T Consensus       207 ~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  285 (706)
T 2z3z_A          207 PTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK  285 (706)
T ss_dssp             CEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred             eEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence                                      346799999998854332 22234556799999999999999887765     8


Q ss_pred             EEEEECCCC-ceeeecceeecccccceeccCCCCccccEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeecC
Q 017421          193 VHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLE-ANKLSLRILAH  268 (372)
Q Consensus       193 i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~  268 (372)
                      |++||+.++ ....+....  ..          .....+..++|+|  ||+++++++.++.+++|++. ++..+..+..+
T Consensus       286 v~~~d~~~g~~~~~~~~~~--~~----------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~  353 (706)
T 2z3z_A          286 VNAYDAETGRFVRTLFVET--DK----------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG  353 (706)
T ss_dssp             EEEEETTTCCEEEEEEEEE--CS----------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred             EEEEECCCCceeeEEEEcc--CC----------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence            999999988 332222110  00          0111346789999  99999999999999999876 56677788878


Q ss_pred             CCCeEE-EEEeCCCCCEEEEEeC-CC----eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421          269 TSDVNT-VCFGDESGHLIYSGSD-DN----LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       269 ~~~v~~-~~~sp~~~~~l~s~~~-dg----~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                      ...+.. ++|+ |+++.|+.++. ++    .|..||+....    .+...+.+++|+|||++++......  ...+.+.+
T Consensus       354 ~~~v~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~--~~p~~i~l  430 (706)
T 2z3z_A          354 EWEVTNFAGFD-PKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSP--TVPRKVTV  430 (706)
T ss_dssp             SSCEEEEEEEC-TTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECS--SCSCEEEE
T ss_pred             CeEEEeeeEEc-CCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCC--CCCcEEEE
Confidence            778877 7999 88887766554 44    56666654321    3556789999999999988663110  01155888


Q ss_pred             eecccce
Q 017421          339 DNYFLLR  345 (372)
Q Consensus       339 w~~~~~~  345 (372)
                      ||..+++
T Consensus       431 ~d~~~~~  437 (706)
T 2z3z_A          431 TNIGKGS  437 (706)
T ss_dssp             EESSSCE
T ss_pred             EECCCCe
Confidence            8887776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=5.4e-18  Score=167.21  Aligned_cols=210  Identities=11%  Similarity=-0.012  Sum_probs=147.2

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC----
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS----  200 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----  200 (372)
                      ..|.+++|+|| +.++.+. ++.|++||+.+++...    ...+...+.+++|+|||+.|+++ .++.|++||+.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence            56999999999 6666654 5999999999885433    22344568889999999999985 679999999988    


Q ss_pred             -Cceeeecceeecc--cccceeccCCCCccccEEEEEEcCCCCEEEEEe-------------------------------
Q 017421          201 -GTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------------------  246 (372)
Q Consensus       201 -~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-------------------------------  246 (372)
                       ++...+.......  .+..    ....+...+.++.|+|||++|++++                               
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQA----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSC----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             CCCcEEeccCCCCCeEcccc----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence             7654332211100  0000    0000112357899999999999887                               


Q ss_pred             --CCCeEEEEECCCCeEEEEee--cCCCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEecccc-c-------CCCC--
Q 017421          247 --SDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVNSVLLL-T-------RSIN--  307 (372)
Q Consensus       247 --~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~l~s~~~dg-----~i~vwd~~~~-~-------~~~~--  307 (372)
                        .+..|++||+.+++......  .|...+.+++|+ |||+.|++++.++     .|++||+.+. .       ....  
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence              34679999999987654432  466789999999 9999999887665     8999998754 1       1121  


Q ss_pred             -CeeEEEecc--CCCeEEEEeeeeEEEeeceEEEeecc-cceEEEEEee
Q 017421          308 -PCNKYLFNP--CNKYLIIYLILVISIYSPNILLDNYF-LLRTFYSFMV  352 (372)
Q Consensus       308 -~v~~~~~s~--~g~~l~~~~~~~~~~~d~~i~lw~~~-~~~~~~~~~~  352 (372)
                       .+..++|+|  ||++++++.      .|+.++||.+. +++.+..+..
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~------~~g~~~l~~~~~~~~~~~~l~~  352 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSR------RDGWNHLYLYDTTGRLIRQVTK  352 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEEC------TTSSCEEEEEETTSCEEEECCC
T ss_pred             CccCCceeecCCCCEEEEEEc------cCCccEEEEEECCCCEEEecCC
Confidence             246789999  999887764      35667777775 5555554433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.77  E-value=2.5e-17  Score=169.31  Aligned_cols=223  Identities=11%  Similarity=0.045  Sum_probs=164.7

Q ss_pred             ceeEeeeeeC-CCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec--------ccCCcceEE
Q 017421          104 CCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA--------KSLRWTVTD  174 (372)
Q Consensus       104 ~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------~~~~~~v~~  174 (372)
                      ....+|.... ......+..|. .+..++|+|||+.|+.+. ++.|++|++... .+......        ..+...+.+
T Consensus       224 g~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~  300 (1045)
T 1k32_A          224 GFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFA  300 (1045)
T ss_dssp             SSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGE
T ss_pred             CceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccce
Confidence            4456676654 33444555555 467789999999998874 799999999544 33221110        013346899


Q ss_pred             EEEC-CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccc-cEEEEEEcCCCCEEEEEeCCCeEE
Q 017421          175 TSLS-PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRELVAGSSDDCIY  252 (372)
Q Consensus       175 ~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~sp~~~~l~s~s~dg~i~  252 (372)
                      ++|+ |||+.|++++ ++.|.+|++.++......                 .|.. .+..++|+ ||+.|++++.+..+.
T Consensus       301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~  361 (1045)
T 1k32_A          301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP-----------------EPLRIRYVRRGGD-TKVAFIHGTREGDFL  361 (1045)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS-----------------CCSCEEEEEECSS-SEEEEEEEETTEEEE
T ss_pred             eeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc-----------------CCCcceEEeeeEc-CCCeEEEEECCCceE
Confidence            9999 9999999888 789999999877643321                 2334 78999999 999999998888899


Q ss_pred             -EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEe
Q 017421          253 -VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       253 -iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                       +||+.+++.. .+..|...+..++|+ |+|++|++++.++.|++||+.+.      ..+...+..++|+|||++|+.+.
T Consensus       362 ~~~d~~~~~~~-~l~~~~~~~~~~~~S-pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          362 GIYDYRTGKAE-KFEENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             EEEETTTCCEE-ECCCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             EEEECCCCCce-EecCCccceeeeEEC-CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEe
Confidence             9999887654 444788899999999 99999999999999999999742      26778889999999999998774


Q ss_pred             eee----EEEeeceEEEeecccceEEEEEe
Q 017421          326 ILV----ISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       326 ~~~----~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      ...    ....+..|++||+.+++ +..+.
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~  468 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDMEGRK-IFAAT  468 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred             cCccccccCCCCCeEEEEECCCCc-EEEee
Confidence            210    00013589999998876 44443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.77  E-value=2.1e-17  Score=169.89  Aligned_cols=178  Identities=16%  Similarity=0.120  Sum_probs=148.2

Q ss_pred             CCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc-ceEEEEECCCCCEEEEEeCCCeEE-EEECCC
Q 017421          124 TSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVH-IVDVGS  200 (372)
Q Consensus       124 ~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-vwd~~~  200 (372)
                      ...+.+++|+ |||++|++++ ++.|.+|++..+....    ...+.. .+..++|+ |++.|++++.++.+. +||+.+
T Consensus       295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~  368 (1045)
T 1k32_A          295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT  368 (1045)
T ss_dssp             CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred             ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence            4478999999 9999999887 6899999998774332    344555 78999999 999999999888898 999987


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      +....+.                 +|...+..++|+|||++|++++.++.|++||+.+++.......|...+.+++|+ |
T Consensus       369 ~~~~~l~-----------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S-p  430 (1045)
T 1k32_A          369 GKAEKFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS-D  430 (1045)
T ss_dssp             CCEEECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-T
T ss_pred             CCceEec-----------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-C
Confidence            7643222                 244579999999999999999999999999999998877777899999999999 9


Q ss_pred             CCCEEEEEeCCC----------eEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEe
Q 017421          281 SGHLIYSGSDDN----------LCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       281 ~~~~l~s~~~dg----------~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      ||++|++++.++          .|++||+..     +..+...+..++|+|||++|+.++
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEe
Confidence            999998887654          899999863     346667788999999999998775

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=1.9e-15  Score=136.74  Aligned_cols=231  Identities=13%  Similarity=0.080  Sum_probs=148.3

Q ss_pred             CCceeEeeeeeCCCCCcc-c-cCCCCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCC-eEEEEeeecccCCcceEE
Q 017421          102 ADCCHMLSRYLPVNGPWP-V-DQTTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERG-WKIQKDILAKSLRWTVTD  174 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~-~~~~~~~~~~~~~~~v~~  174 (372)
                      .+..+.+|.+.+...... + ..+...+..++|+|||++|++++.+    +.|.+|++... ..+........+...+..
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~  104 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY  104 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred             CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence            345667777765432211 1 1166778889999999999988875    79999988753 122222222233345677


Q ss_pred             EEECCCCCEEEEEe-CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEE
Q 017421          175 TSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIY  252 (372)
Q Consensus       175 ~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~  252 (372)
                      +++  ++++|++++ .++.|.+|++..............+.+.  .+.....+...+.+++|+|+|+++++++ .++.|.
T Consensus       105 ~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~  180 (361)
T 3scy_A          105 LTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS--GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH  180 (361)
T ss_dssp             EEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC--CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC--CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence            777  788877776 5789999999764432211111111110  0111112334578899999999776555 478999


Q ss_pred             EEECCCCeE------E-------EEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecccc-----------cCCCC
Q 017421          253 VYDLEANKL------S-------LRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLL-----------TRSIN  307 (372)
Q Consensus       253 iwd~~~~~~------~-------~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~-----------~~~~~  307 (372)
                      +|++.....      +       .....+...+..++|+ |+|+++++++ .++.|.+||+...           ..+..
T Consensus       181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~  259 (361)
T 3scy_A          181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ  259 (361)
T ss_dssp             EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC
T ss_pred             EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC
Confidence            999875431      1       1122345568899999 9999888777 6899999998621           12234


Q ss_pred             CeeEEEeccCCCeEEEEeeeeEEEe-eceEEEeecc
Q 017421          308 PCNKYLFNPCNKYLIIYLILVISIY-SPNILLDNYF  342 (372)
Q Consensus       308 ~v~~~~~s~~g~~l~~~~~~~~~~~-d~~i~lw~~~  342 (372)
                      .+..++|+|||++|+++..     . ++.|.+|++.
T Consensus       260 ~~~~i~~spdg~~l~v~~~-----~~~~~i~v~~~~  290 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNR-----LKADGVAIFKVD  290 (361)
T ss_dssp             CEEEEEECTTSSEEEEEEC-----SSSCEEEEEEEC
T ss_pred             CcccEEECCCCCEEEEECC-----CCCCEEEEEEEc
Confidence            4679999999999876631     1 3667788774

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=164.74  Aligned_cols=194  Identities=12%  Similarity=0.101  Sum_probs=139.1

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc---ceEEEEECCCCCEEEEEeC---------CCeEEEE
Q 017421          129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASM---------SPIVHIV  196 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~vw  196 (372)
                      .++|+|+|++++ .+.|+.|++||+.+++....   ...+..   .+.+++|+|||++|++++.         ++.|++|
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTI---LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEE---ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEE---EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            578999996544 45689999999998865432   222222   3889999999999998876         6899999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCe---
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDV---  272 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v---  272 (372)
                      |+.+++......+.                 ..+..++|||||+.|+.+. ++.|++||+.+++..... .++...|   
T Consensus        96 d~~~g~~~~~~~l~-----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           96 DLSNGEFVRGNELP-----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             ETTTTEECCSSCCC-----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             ECCCCccccceecC-----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence            99988752111111                 1578899999999999886 789999999988764332 2232222   


Q ss_pred             --------------EEEEEeCCCCCEEEEEeCCC----------------------------------eEEEEeccccc-
Q 017421          273 --------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVNSVLLLT-  303 (372)
Q Consensus       273 --------------~~~~~sp~~~~~l~s~~~dg----------------------------------~i~vwd~~~~~-  303 (372)
                                    .+++|+ |||+.|++++.|.                                  .|++||+.... 
T Consensus       158 ~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~  236 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY  236 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred             cccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence                          489999 9999999987552                                  78899987432 


Q ss_pred             -------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee----cccceEE
Q 017421          304 -------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN----YFLLRTF  347 (372)
Q Consensus       304 -------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~----~~~~~~~  347 (372)
                                   .+...+.+++|+||++++++..+..  .....|.+||    +.+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~--~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV--QNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS--TTEEEEEEEEECSSSSSEECC
T ss_pred             cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc--cCeEEEEEEcccCCCCCCceE
Confidence                         3666789999999988776643211  0013477788    6666543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=6.9e-18  Score=166.82  Aligned_cols=209  Identities=12%  Similarity=0.045  Sum_probs=142.8

Q ss_pred             CCceeEeeeeeCCCCCccccCCCC---ceEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEeeecccCC
Q 017421          102 ADCCHMLSRYLPVNGPWPVDQTTS---RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLR  169 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~  169 (372)
                      .+..+.+|+.........+.+|..   .+.+++|||||++|++++.         ++.|++||+.+++.+... ..   .
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~  109 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---P  109 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CC---C
T ss_pred             CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ec---C
Confidence            355667777655554444443332   3889999999999998876         689999999988542101 11   1


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccc---------cEEEEEEcCCCC
Q 017421          170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF---------GIFSLKFSTDGR  240 (372)
Q Consensus       170 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~~sp~~~  240 (372)
                      ..+..++|+|||+.|+++. ++.|++|++.+++...+...  ......+.     |+..         ....++|+|||+
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~--~~~~~v~~-----g~~~~v~~ee~~~~~~~~~wSPDG~  181 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN--GRENKIFN-----GIPDWVYEEEMLATKYALWWSPNGK  181 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC--CBTTTEEE-----SSCCHHHHHHTTCSSCCEEECTTSS
T ss_pred             cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC--CCcCCeEc-----ccccceeeeecccCcccEEECCCCC
Confidence            3588899999999999986 78999999998876433211  11110010     1111         125899999999


Q ss_pred             EEEEEeCCC----------------------------------eEEEEECCCCeEE--EE------eecCCCCeEEEEEe
Q 017421          241 ELVAGSSDD----------------------------------CIYVYDLEANKLS--LR------ILAHTSDVNTVCFG  278 (372)
Q Consensus       241 ~l~s~s~dg----------------------------------~i~iwd~~~~~~~--~~------~~~~~~~v~~~~~s  278 (372)
                      +|++++.|.                                  .|++||+.+++..  ..      +.+|...+..++|+
T Consensus       182 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  261 (719)
T 1z68_A          182 FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV  261 (719)
T ss_dssp             EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe
Confidence            999887552                                  7889999987642  12      23577789999999


Q ss_pred             CCCCCEEEEEeCC----CeEEEEe----ccc------c----cCCCCCee-----EEEeccCCCeEEE
Q 017421          279 DESGHLIYSGSDD----NLCKVNS----VLL------L----TRSINPCN-----KYLFNPCNKYLII  323 (372)
Q Consensus       279 p~~~~~l~s~~~d----g~i~vwd----~~~------~----~~~~~~v~-----~~~~s~~g~~l~~  323 (372)
                       ||++++++....    ..|.+||    +.+      .    ..+...+.     .+.|+|||+.++.
T Consensus       262 -pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          262 -TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             -SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             -CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence             888877775432    2488899    542      2    24555666     8899999997765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=9.1e-17  Score=154.97  Aligned_cols=194  Identities=12%  Similarity=0.025  Sum_probs=137.1

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCC-cceEEEEECCCCCEEEEEeC---CCeEEEEEC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASM---SPIVHIVDV  198 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~  198 (372)
                      ..+|++++|+|||+.||+++. ||++.||++.++....    ...+. ..+..+.|+|| +.+++++.   +....+|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            457999999999999998877 9999999997664322    22333 47899999999 77777665   454556554


Q ss_pred             CC---CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE--EEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 017421          199 GS---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGSSDDCIYVYDLEANKLSLRILAHTSDVN  273 (372)
Q Consensus       199 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  273 (372)
                      ..   +....+..                  ...+...+|+|+|+.  +++++. +.+.+||+.+++.......+ .  .
T Consensus        96 ~~~~~g~~~~l~~------------------~~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~-~--~  153 (582)
T 3o4h_A           96 NTSRPGEEQRLEA------------------VKPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARLP-G--F  153 (582)
T ss_dssp             ETTSTTCCEECTT------------------SCSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEES-S--C
T ss_pred             eccCCCccccccC------------------CCCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecCC-C--c
Confidence            33   22211111                  012345688888753  344444 44559999998765544433 3  7


Q ss_pred             EEEEeCCCCCEEEEEeCC----CeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeec--eEEEeecc
Q 017421          274 TVCFGDESGHLIYSGSDD----NLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSP--NILLDNYF  342 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~d----g~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~--~i~lw~~~  342 (372)
                      +++|+ |||++|++++.+    +.|++||+.+     +..+...+..++|+|||+.|+++.      .++  +|++||+.
T Consensus       154 ~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~------~~~~~~i~~~d~~  226 (582)
T 3o4h_A          154 GFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE------TAREARLVTVDPR  226 (582)
T ss_dssp             EEEEE-EETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE------CSSCEEEEEECTT
T ss_pred             eEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc------CCCeeEEEEEcCC
Confidence            89999 999999988776    7899999763     346777889999999999999543      355  78999998


Q ss_pred             cceEEEEEee
Q 017421          343 LLRTFYSFMV  352 (372)
Q Consensus       343 ~~~~~~~~~~  352 (372)
                      +++.. .+.+
T Consensus       227 ~~~~~-~~~~  235 (582)
T 3o4h_A          227 DGSVE-DLEL  235 (582)
T ss_dssp             TCCEE-ECCC
T ss_pred             CCcEE-EccC
Confidence            88765 4433

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=1.6e-15  Score=137.22  Aligned_cols=224  Identities=11%  Similarity=0.100  Sum_probs=146.1

Q ss_pred             ceeEeeeeeCCCC-Cc---cccCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEee---ecc--------c
Q 017421          104 CCHMLSRYLPVNG-PW---PVDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDI---LAK--------S  167 (372)
Q Consensus       104 ~~~~~~~~~~~~~-~~---~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~---~~~--------~  167 (372)
                      ..+.+|.+.+... ..   .+..+...+..+++  ++++|++++ .++.|.+|++.....+....   ...        .
T Consensus        75 ~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~  152 (361)
T 3scy_A           75 AAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ  152 (361)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred             CcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence            3566677665421 11   22334566777888  788777765 57899999997543222111   011        1


Q ss_pred             CCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCce------eeec---ceeecccccceeccCCCCccccEEEEEEcC
Q 017421          168 LRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM------ESLA---NVTEIHDGLDFSAADDGGYSFGIFSLKFST  237 (372)
Q Consensus       168 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  237 (372)
                      +...+.+++|+|+++++++++. ++.|.+|++.....      ....   .....            .+...+..++|+|
T Consensus       153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~sp  220 (361)
T 3scy_A          153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNS  220 (361)
T ss_dssp             SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECT
T ss_pred             CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcC
Confidence            1223578999999997766654 78999999875442      1000   00000            1223578899999


Q ss_pred             CCCEEEEEe-CCCeEEEEECCCCeE--EEEee---cCCCCeEEEEEeCCCCCEEEEEeCC--CeEEEEecc----ccc--
Q 017421          238 DGRELVAGS-SDDCIYVYDLEANKL--SLRIL---AHTSDVNTVCFGDESGHLIYSGSDD--NLCKVNSVL----LLT--  303 (372)
Q Consensus       238 ~~~~l~s~s-~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~d--g~i~vwd~~----~~~--  303 (372)
                      ||+++++++ .++.|.+||+.+++.  +..+.   .+...+..++|+ |+|++|+++..+  +.|.+|++.    .+.  
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~  299 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-PDGKYLYASNRLKADGVAIFKVDETNGTLTKV  299 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-TTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence            999887776 689999999987754  23332   233457899999 999988776654  899999985    111  


Q ss_pred             ---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee--cccceEE
Q 017421          304 ---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN--YFLLRTF  347 (372)
Q Consensus       304 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~--~~~~~~~  347 (372)
                         .....+..++|+|+|++|+++..     .++.+.+|+  ..+++..
T Consensus       300 ~~~~~g~~~~~~~~spdg~~l~~~~~-----~~~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          300 GYQLTGIHPRNFIITPNGKYLLVACR-----DTNVIQIFERDQATGLLT  343 (361)
T ss_dssp             EEEECSSCCCEEEECTTSCEEEEEET-----TTTEEEEEEECTTTCCEE
T ss_pred             eEecCCCCCceEEECCCCCEEEEEEC-----CCCCEEEEEEECCCCcEe
Confidence               11446789999999999888742     257788854  4466543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=1.1e-16  Score=154.46  Aligned_cols=210  Identities=8%  Similarity=-0.012  Sum_probs=145.6

Q ss_pred             CceeEeeeeeCCCCCccccCCC-CceEEEEECCCCCEEEEEeC---CCcEEEEeCCC--CeEEEEeeecccCCcceEEEE
Q 017421          103 DCCHMLSRYLPVNGPWPVDQTT-SRAYVSQFSADGSLFVAGFQ---ASQIRIYDVER--GWKIQKDILAKSLRWTVTDTS  176 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~  176 (372)
                      +....+|.. .......+..|. ..+..++|+|| +.+++++.   +....+|.+..  .......  ....  .+...+
T Consensus        43 ~g~~~lw~~-~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--~~~~--~~~~~~  116 (582)
T 3o4h_A           43 EGSVNAYLY-DGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL--EAVK--PMRILS  116 (582)
T ss_dssp             TTEEEEEEE-ETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--TTSC--SBEEEE
T ss_pred             CCceeEEEE-cCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--cCCC--Cceeee
Confidence            556778886 444455566665 68999999999 77777664   44455654432  1111121  1111  234567


Q ss_pred             ECCCCCE-EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeE
Q 017421          177 LSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCI  251 (372)
Q Consensus       177 ~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i  251 (372)
                      |+|+++. +++...++.+.+||+.+++...+..                 +  ...+++|+|||++|++++.+    +.|
T Consensus       117 ~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------------~--~~~~~~~spDG~~la~~~~~~~~~~~i  177 (582)
T 3o4h_A          117 GVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------------L--PGFGFVSDIRGDLIAGLGFFGGGRVSL  177 (582)
T ss_dssp             EEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------------E--SSCEEEEEEETTEEEEEEEEETTEEEE
T ss_pred             eCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------------C--CCceEEECCCCCEEEEEEEcCCCCeEE
Confidence            8887764 3333444556699999887544332                 1  11688999999999988776    789


Q ss_pred             EEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC--eEEEEecccc-----cCCCCCeeEEE--------ecc
Q 017421          252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVNSVLLL-----TRSINPCNKYL--------FNP  316 (372)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~vwd~~~~-----~~~~~~v~~~~--------~s~  316 (372)
                      ++||+.+++.. .+..|...+..++|+ |||+.|+++..++  .|++||+.+.     ..+...+..++        |+|
T Consensus       178 ~~~d~~~g~~~-~l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  255 (582)
T 3o4h_A          178 FTSNLSSGGLR-VFDSGEGSFSSASIS-PGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP  255 (582)
T ss_dssp             EEEETTTCCCE-EECCSSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT
T ss_pred             EEEcCCCCCce-EeecCCCccccceEC-CCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC
Confidence            99999988764 667788889999999 9999999888888  8999998642     34555666667        999


Q ss_pred             CCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          317 CNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      ||.+++++.      .|+++++|++  ++..
T Consensus       256 dg~~~~~~~------~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          256 DGRLAVVAR------REGRSAVFID--GERV  278 (582)
T ss_dssp             TSCEEEEEE------ETTEEEEEET--TEEE
T ss_pred             CCcEEEEEE------cCCcEEEEEE--CCee
Confidence            996666664      5788888888  5544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=8.3e-16  Score=137.86  Aligned_cols=156  Identities=13%  Similarity=0.150  Sum_probs=111.3

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCCceeeec
Q 017421          129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      +++++++++++++++.++.|.+||+.+++.+.....  +....+..++|+|+++.+++ ...++.|.+||+.+++.....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            456888899999999999999999998866554322  21124778999999987654 456899999999988764333


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCe---EEEEeecCCCCe
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------DCIYVYDLEANK---LSLRILAHTSDV  272 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------------g~i~iwd~~~~~---~~~~~~~~~~~v  272 (372)
                      ......          ......+..++|+|+|++|++++.+            +.|.+||+.+++   .+..+. +...+
T Consensus        82 ~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~  150 (349)
T 1jmx_B           82 NLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQV  150 (349)
T ss_dssp             ESCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSC
T ss_pred             Eccccc----------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcc
Confidence            211000          0002246789999999999988865            899999998843   333443 34468


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~  301 (372)
                      .+++|+ |+|+ +++++.  .|.+||+.+
T Consensus       151 ~~~~~s-~dg~-l~~~~~--~i~~~d~~~  175 (349)
T 1jmx_B          151 YLMRAA-DDGS-LYVAGP--DIYKMDVKT  175 (349)
T ss_dssp             CCEEEC-TTSC-EEEESS--SEEEECTTT
T ss_pred             cceeEC-CCCc-EEEccC--cEEEEeCCC
Confidence            899999 8998 555543  499999863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=3e-15  Score=135.75  Aligned_cols=203  Identities=10%  Similarity=-0.003  Sum_probs=138.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeeecccCCcceEEEEECCCCCE--EEEEe------------
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYAS------------  188 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~------------  188 (372)
                      ...+..++|+|+|++|++++.+ .|.+|++. +++...... .... ..+..++|+|++++  ++++.            
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-eecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            3467889999999999988887 99999997 665432211 1111 12556899999995  44443            


Q ss_pred             -CCCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCeEE--
Q 017421          189 -MSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE-ANKLS--  262 (372)
Q Consensus       189 -~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~-~~~~~--  262 (372)
                       .++.+.+|++.. ++......... +           .+...+.+++|+|||++|+++.. ++.|.+||+. +++..  
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~-~-----------~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~  183 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYE-Y-----------QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV  183 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEE-C-----------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEE-e-----------CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence             689999999974 54322211110 0           12246899999999998887654 6799999998 67643  


Q ss_pred             EEee--cCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEeccc--c---------cC-------CCC------CeeEEE-e
Q 017421          263 LRIL--AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSVLL--L---------TR-------SIN------PCNKYL-F  314 (372)
Q Consensus       263 ~~~~--~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~~--~---------~~-------~~~------~v~~~~-~  314 (372)
                      ..+.  .|...+..++|+ |+|++|++++. ++.|.+|++..  .         ..       +..      .+..++ |
T Consensus       184 ~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  262 (365)
T 1jof_A          184 GSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             EEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             eeEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence            2333  245678999999 99999888775 78999997641  1         01       111      478899 9


Q ss_pred             ccCCCeEEEEeeeeEEEee----ceEEEeecc-cceE
Q 017421          315 NPCNKYLIIYLILVISIYS----PNILLDNYF-LLRT  346 (372)
Q Consensus       315 s~~g~~l~~~~~~~~~~~d----~~i~lw~~~-~~~~  346 (372)
                      +|||++|+++...    .+    ++|.+|++. +++.
T Consensus       263 spdG~~l~v~~~~----~~~~~~~~i~v~~~~~~g~~  295 (365)
T 1jof_A          263 TFSGKYMFASSRA----NKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             CTTSSEEEEEEEE----SSTTSCCEEEEEEECTTSCE
T ss_pred             CCCCCEEEEECCC----CCCCCCCeEEEEEECCCCCE
Confidence            9999998876411    11    178899885 5553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=5.6e-16  Score=153.68  Aligned_cols=232  Identities=12%  Similarity=0.029  Sum_probs=150.1

Q ss_pred             CceeEeeeeeCCCCCccccCCCCc-----eEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEeeecccC
Q 017421          103 DCCHMLSRYLPVNGPWPVDQTTSR-----AYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSL  168 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~  168 (372)
                      +..+.+|+.........+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++...    ...+
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~  110 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERI  110 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCC
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccC
Confidence            566777777666555555555432     3457899999999998875         567799999985432    4455


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCc----cccEEEEEEcCCCCEEEE
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY----SFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~i~~~~~sp~~~~l~s  244 (372)
                      ...+..++|||||+.|+.+. ++.|++|++.++....+...  ......+....+--+    ......+.|||||+.|+.
T Consensus       111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~--g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~  187 (740)
T 4a5s_A          111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWT--GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAY  187 (740)
T ss_dssp             CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSC--CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred             CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCC--CCccceecCcccccccchhcCCCcceEECCCCCEEEE
Confidence            66799999999999999885 68999999998875443321  111101110000000    012235899999999988


Q ss_pred             EeCCC------------------------------------eEEEEECCC---Ce--EEEEee------cCCCCeEEEEE
Q 017421          245 GSSDD------------------------------------CIYVYDLEA---NK--LSLRIL------AHTSDVNTVCF  277 (372)
Q Consensus       245 ~s~dg------------------------------------~i~iwd~~~---~~--~~~~~~------~~~~~v~~~~~  277 (372)
                      ++.|.                                    .|++||+.+   ++  ....+.      +|...+..++|
T Consensus       188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w  267 (740)
T 4a5s_A          188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW  267 (740)
T ss_dssp             EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEE
T ss_pred             EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEE
Confidence            75321                                    588899998   73  223333      27778999999


Q ss_pred             eCCCCCEEEEEeC----CCeEEEEeccccc--------------CCCCCee-----EEEeccCCCeEE-EEeeeeEEEee
Q 017421          278 GDESGHLIYSGSD----DNLCKVNSVLLLT--------------RSINPCN-----KYLFNPCNKYLI-IYLILVISIYS  333 (372)
Q Consensus       278 sp~~~~~l~s~~~----dg~i~vwd~~~~~--------------~~~~~v~-----~~~~s~~g~~l~-~~~~~~~~~~d  333 (372)
                      + |||++++....    +..|.+||+.+..              .+...|.     .+.|+|||+.++ ..++..   -.
T Consensus       268 s-pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~---G~  343 (740)
T 4a5s_A          268 A-TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE---GY  343 (740)
T ss_dssp             E-ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT---SC
T ss_pred             e-CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC---Cc
Confidence            9 89987665532    3479999976432              2444444     789999999877 443210   01


Q ss_pred             ceEEEeecccce
Q 017421          334 PNILLDNYFLLR  345 (372)
Q Consensus       334 ~~i~lw~~~~~~  345 (372)
                      ..|.+|+..+++
T Consensus       344 ~~l~~~~~~~~~  355 (740)
T 4a5s_A          344 RHICYFQIDKKD  355 (740)
T ss_dssp             EEEEEEETTCSS
T ss_pred             eEEEEEECCCCc
Confidence            345666655443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.71  E-value=2.7e-15  Score=133.68  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc-ceEEEEECCCCCEEEE-EeCCCeEEEEECCCCceeeecceeeccc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      ++|++++.++.|.+||+.+++.+.....  ++.. .+..++|+|+++.+++ +..++.|.+||+.+++..........  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--
Confidence            4788999999999999998866554322  2211 3778999999987654 55578999999998876443322110  


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCC
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  282 (372)
                      +         .+...+..++|+|+|++++++.            .++.|.+||+.+++.+..+.. ...+.+++|+ |++
T Consensus        78 ~---------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg  146 (337)
T 1pby_B           78 E---------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDG  146 (337)
T ss_dssp             T---------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTS
T ss_pred             c---------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCC
Confidence            0         0122466799999999988876            579999999999988777764 4567889999 999


Q ss_pred             CEEEEEeCCCeEEEEecc
Q 017421          283 HLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~  300 (372)
                      ++|+++  ++.|.+||+.
T Consensus       147 ~~l~~~--~~~i~~~d~~  162 (337)
T 1pby_B          147 SKLYGL--GRDLHVMDPE  162 (337)
T ss_dssp             SCEEEE--SSSEEEEETT
T ss_pred             CEEEEe--CCeEEEEECC
Confidence            988877  6889999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=4.2e-16  Score=154.57  Aligned_cols=194  Identities=12%  Similarity=0.084  Sum_probs=139.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc-----ceEEEEECCCCCEEEEEeCC---------C
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMS---------P  191 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d---------g  191 (372)
                      ....+.|+|||++++++  |+.|++||+.++.....   ...+..     ....+.|||||++|++++.+         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF---LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE---ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE---EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            45578999999988886  89999999998865432   223321     22458899999999998875         6


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCCC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS  270 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~  270 (372)
                      .+.+||+.+++...+.                 .|...+..++|||||+.||.+. ++.|++||+.+++..+.. .++..
T Consensus        93 ~~~~~d~~~~~~~~l~-----------------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~  154 (740)
T 4a5s_A           93 SYDIYDLNKRQLITEE-----------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED  154 (740)
T ss_dssp             EEEEEETTTTEECCSS-----------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT
T ss_pred             EEEEEECCCCcEEEcc-----------------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc
Confidence            6789999998764432                 2344789999999999999885 689999999888754321 22322


Q ss_pred             Ce-----------------EEEEEeCCCCCEEEEEeCCC------------------------------------eEEEE
Q 017421          271 DV-----------------NTVCFGDESGHLIYSGSDDN------------------------------------LCKVN  297 (372)
Q Consensus       271 ~v-----------------~~~~~sp~~~~~l~s~~~dg------------------------------------~i~vw  297 (372)
                      .+                 ..+.|| |||+.|+.++.|.                                    .|++|
T Consensus       155 ~~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          155 IIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ceecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            22                 348999 9999999875321                                    47888


Q ss_pred             eccc---c---c-----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          298 SVLL---L---T-----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       298 d~~~---~---~-----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |+.+   .   .           .+...+..++|+|||+.++......  ..+..|.+||+.+++
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~--~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI--QNYSVMDICDYDESS  296 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS--TTEEEEEEEEEETTT
T ss_pred             ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC--CCEEEEEEEECCCCc
Confidence            8876   4   1           1555688999999999766543110  013468899988876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=8.3e-16  Score=139.49  Aligned_cols=201  Identities=11%  Similarity=0.041  Sum_probs=136.7

Q ss_pred             ceEEEEECCCCCE--EEEEe-------------CCCcEEEEeCCC-CeEEEEeeec-ccCCcceEEEEECCCCCEEEEEe
Q 017421          126 RAYVSQFSADGSL--FVAGF-------------QASQIRIYDVER-GWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYAS  188 (372)
Q Consensus       126 ~v~~~~~s~~~~~--l~~~~-------------~dg~i~vwd~~~-~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~  188 (372)
                      .+.+++|+|+|++  ++++.             .++.+.+|++.. +......... ..+...+.+++|+|||++++++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3556899999995  44543             689999999974 4433222111 12334689999999999888776


Q ss_pred             C-CCeEEEEECC-CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECC--CCeEE-
Q 017421          189 M-SPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE--ANKLS-  262 (372)
Q Consensus       189 ~-dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~--~~~~~-  262 (372)
                      . ++.|.+|++. +++..........            .|...+..++|+|||+++++++. ++.|.+|++.  +++.. 
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~------------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAP------------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECS------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecC------------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            4 6799999998 6664322211100            01236889999999999887765 6899999875  45532 


Q ss_pred             --EEeec-------CCC------CeEEEE-EeCCCCCEEEEEeCC-C-----eEEEEeccc---cc-------CCCCCee
Q 017421          263 --LRILA-------HTS------DVNTVC-FGDESGHLIYSGSDD-N-----LCKVNSVLL---LT-------RSINPCN  310 (372)
Q Consensus       263 --~~~~~-------~~~------~v~~~~-~sp~~~~~l~s~~~d-g-----~i~vwd~~~---~~-------~~~~~v~  310 (372)
                        ..+..       |..      .+..++ |+ |+|++|++++.+ +     .|.+|++..   +.       .+...+.
T Consensus       232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~  310 (365)
T 1jof_A          232 THHSFPLIPPGIPDRDPETGKGLYRADVCALT-FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred             ccceEEcCCCCcCCcccccccccccccEEEEC-CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc
Confidence              22221       122      478999 99 999988876643 2     899999851   11       1334567


Q ss_pred             EEEecc---CCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          311 KYLFNP---CNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       311 ~~~~s~---~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      .++|+|   +|++|+++..     .+++|.+|++...
T Consensus       311 ~~a~sp~~~dg~~l~v~~~-----~~~~v~v~~~~~~  342 (365)
T 1jof_A          311 SNAVSPCPWSDEWMAITDD-----QEGWLEIYRWKDE  342 (365)
T ss_dssp             CCCEEECTTCTTEEEEECS-----SSCEEEEEEEETT
T ss_pred             cceecCCCcCCCEEEEEEc-----CCCeEEEEEEchh
Confidence            889999   8999988842     1478899988765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=2.4e-15  Score=137.23  Aligned_cols=208  Identities=14%  Similarity=0.045  Sum_probs=143.8

Q ss_pred             CccccCCCCceEE-----EEECCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe
Q 017421          117 PWPVDQTTSRAYV-----SQFSADGSLFVAGFQ-AS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS  188 (372)
Q Consensus       117 ~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  188 (372)
                      ...+..|......     .+|+|||++|+.++. ++  .|.+||+.+++....   ...+...+..+.|+||++.|++++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l---t~~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL---TEGRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC---CCSSCBCSSSCEECTTSSEEEEEE
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe---eeCCCCCccceEEcCCCCEEEEEe
Confidence            3445555555555     789999999998887 66  488889988754432   334444455678999999999999


Q ss_pred             CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEE--EEEcCCCCEEEEEe--------------------
Q 017421          189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS--LKFSTDGRELVAGS--------------------  246 (372)
Q Consensus       189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~--~~~sp~~~~l~s~s--------------------  246 (372)
                      .++.|++||+.+++...+....                ...+..  ..++|++++++...                    
T Consensus       100 ~~~~l~~~d~~~g~~~~~~~~~----------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENVVYQVP----------------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             TTTEEEEEETTTCCEEEEEECC----------------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             CCCeEEEEECCCCcceeeeech----------------hhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence            9999999999998765443321                112322  33489999887432                    


Q ss_pred             --CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC-CCCEEEEEeCC------CeEEEEeccc-----ccCCC--CCee
Q 017421          247 --SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDD------NLCKVNSVLL-----LTRSI--NPCN  310 (372)
Q Consensus       247 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~l~s~~~d------g~i~vwd~~~-----~~~~~--~~v~  310 (372)
                        .+..|.+||+.+++.. .+..+...+..++|+ | +|+.|+.+..+      ..|.++|+..     +..+.  ..+.
T Consensus       164 ~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGEST-VILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT  241 (388)
T ss_dssp             GCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE
T ss_pred             cCCcceEEEEECCCCceE-EeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc
Confidence              3467999999988654 444566788999999 8 99988877653      3677787652     22232  3577


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      .+.|+|||+.|+..+...- ..+..|.+||+.+++.
T Consensus       242 ~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKG-SPDRFIYSADPETLEN  276 (388)
T ss_dssp             EEEECTTSSCEEEEEEETT-CCCEEEEEECTTTCCE
T ss_pred             cceECCCCCEEEEEecCCC-CCcceEEEEecCCCce
Confidence            8999999998876532100 0012489999988873

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=3.9e-15  Score=145.67  Aligned_cols=211  Identities=9%  Similarity=-0.011  Sum_probs=142.1

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceE---------EEEEC--CCCCE-EEEEeC-CCcEEEEeCC--C-CeEEEEeeecc-
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAY---------VSQFS--ADGSL-FVAGFQ-ASQIRIYDVE--R-GWKIQKDILAK-  166 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~~~~-dg~i~vwd~~--~-~~~~~~~~~~~-  166 (372)
                      ....+|..........+..+...+.         ...|+  |||+. |+.++. +..|.++++.  . +. ...+.... 
T Consensus        47 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~  125 (662)
T 3azo_A           47 GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA  125 (662)
T ss_dssp             TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC
T ss_pred             CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc
Confidence            3456666655555566666766666         56565  99998 776654 5677777776  2 32 22211110 


Q ss_pred             -cCCcceEEEEECCCCCEEEEEeCC----------CeEEEEECCC------CceeeecceeecccccceeccCCCCcccc
Q 017421          167 -SLRWTVTDTSLSPDQRHLVYASMS----------PIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFG  229 (372)
Q Consensus       167 -~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  229 (372)
                       .+...+..++|+|||+.|++++.+          ..|++||+.+      +....+..  .              +...
T Consensus       126 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~--------------~~~~  189 (662)
T 3azo_A          126 VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--D--------------AHRF  189 (662)
T ss_dssp             STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--S--------------CSSE
T ss_pred             CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--c--------------CCCc
Confidence             055678899999999999998876          5899999987      54432220  0              1235


Q ss_pred             EEEEEEcCCCCEEEEEeCC--------CeEEEEECC-CC---eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC--eEE
Q 017421          230 IFSLKFSTDGRELVAGSSD--------DCIYVYDLE-AN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCK  295 (372)
Q Consensus       230 i~~~~~sp~~~~l~s~s~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~  295 (372)
                      +..++|+|||++|+.++.+        ..|++||+. ++   +.......|...+..+.|+ |||+++++++.++  .|.
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~  268 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA-PDGSLIVATDRTGWWNLH  268 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC-TTSCEEEEECTTSSCEEE
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC-CCCeEEEEECCCCCeEEE
Confidence            7778999999999877754        379999999 57   4444444567889999999 9999888888888  566


Q ss_pred             EEecccc-----cCCCCC---------eeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          296 VNSVLLL-----TRSINP---------CNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       296 vwd~~~~-----~~~~~~---------v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                      +||+...     ..+...         +..++|+|++++++++.      . +.++||
T Consensus       269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~------~-~~~~l~  319 (662)
T 3azo_A          269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG------K-GAAVLG  319 (662)
T ss_dssp             EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB------S-SSCEEE
T ss_pred             EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE------c-CccEEE
Confidence            6665321     111111         46789999999888775      2 555666

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=1.5e-14  Score=141.48  Aligned_cols=188  Identities=11%  Similarity=0.048  Sum_probs=129.0

Q ss_pred             CCCccccC-----CCCceEEEEECCCCCEEEEEeCC----------CcEEEEeCCC------CeEEEEeeecc-cCCcce
Q 017421          115 NGPWPVDQ-----TTSRAYVSQFSADGSLFVAGFQA----------SQIRIYDVER------GWKIQKDILAK-SLRWTV  172 (372)
Q Consensus       115 ~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~~~~-~~~~~v  172 (372)
                      .....+..     |...+..++|+|||+.|++++.+          ..|++|++.+      +.. ..   .. .+...+
T Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~---l~~~~~~~~  190 (662)
T 3azo_A          115 AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RE---LSDDAHRFV  190 (662)
T ss_dssp             CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EE---SSCSCSSEE
T ss_pred             CCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eE---EEecCCCcc
Confidence            44555655     67789999999999999988876          5899999987      432 22   22 334468


Q ss_pred             EEEEECCCCCEEEEEeCC--------CeEEEEECC-CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE
Q 017421          173 TDTSLSPDQRHLVYASMS--------PIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  243 (372)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d--------g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~  243 (372)
                      ..++|+|||++|+.++.+        ..|++||+. ++.......+..             +|...+..+.|+|||++++
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-------------~~~~~~~~~~~spdg~l~~  257 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-------------GPEEAIAQAEWAPDGSLIV  257 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-------------ETTBCEEEEEECTTSCEEE
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-------------CCCceEcceEECCCCeEEE
Confidence            889999999999987754        379999998 562211112111             1234789999999999777


Q ss_pred             EEeCCC--eEEEEECCCCeEEEEeecCCCC--------eEEEEEeCCCCCEEEEEeCCCeEEEE--ecc-----cccCCC
Q 017421          244 AGSSDD--CIYVYDLEANKLSLRILAHTSD--------VNTVCFGDESGHLIYSGSDDNLCKVN--SVL-----LLTRSI  306 (372)
Q Consensus       244 s~s~dg--~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~sp~~~~~l~s~~~dg~i~vw--d~~-----~~~~~~  306 (372)
                      ++..++  .|.+||+.+++.......+...        +..++|+ ++++++++++. +.++||  |+.     .+..+.
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~  335 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL-ANGLIAVVHGK-GAAVLGILDPESGELVDAAGPW  335 (662)
T ss_dssp             EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC-TTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSC
T ss_pred             EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEe-CCCEEEEEEEc-CccEEEEEECCCCcEEEecCCC
Confidence            887777  6777777677654333322221        4678898 88999999988 999999  443     233445


Q ss_pred             CCeeEEEeccCCCeEE
Q 017421          307 NPCNKYLFNPCNKYLI  322 (372)
Q Consensus       307 ~~v~~~~~s~~g~~l~  322 (372)
                      ..+..+ |++++..++
T Consensus       336 ~~~~~~-~s~~~~~~~  350 (662)
T 3azo_A          336 TEWAAT-LTVSGTRAV  350 (662)
T ss_dssp             CEEEEE-EEEETTEEE
T ss_pred             CeEEEE-EecCCCEEE
Confidence            556655 155555444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=3.5e-13  Score=117.62  Aligned_cols=206  Identities=13%  Similarity=0.038  Sum_probs=143.7

Q ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec---ccCCcceEEEEE-CCCCCEEEEEeC-CCeEEE
Q 017421          121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSL-SPDQRHLVYASM-SPIVHI  195 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~~l~~~~~-dg~i~v  195 (372)
                      .++-..+.+++++++++++++...++.|.+||.. +..+......   ..+...+..+++ .++++++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3456679999999999988888888999999987 4343332111   123346889999 567766666543 789999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVN  273 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~  273 (372)
                      ||. +++.......               .+...+..++++|+|+++++...++.|.+||.. ++.+..+.  .+...+.
T Consensus       105 ~d~-~g~~~~~~~~---------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A          105 YNQ-YGQFVRKFGA---------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             ECT-TSCEEEEECT---------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             ECC-CCcEEEEecC---------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence            994 4543222110               122368899999999988888788999999965 55555554  3445789


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeccc-----cc--CCCCCeeEEEeccCCCeEEEEeeeeEEEeec-eEEEeecccce
Q 017421          274 TVCFGDESGHLIYSGSDDNLCKVNSVLL-----LT--RSINPCNKYLFNPCNKYLIIYLILVISIYSP-NILLDNYFLLR  345 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~-~i~lw~~~~~~  345 (372)
                      .++++ ++|+++++...++.|++||...     +.  ++...+..++++|+|+++++..      .++ .|.+|+. +++
T Consensus       168 ~i~~~-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~------~~~~~i~~~~~-~g~  239 (286)
T 1q7f_A          168 GVVVN-DKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN------HNNFNLTIFTQ-DGQ  239 (286)
T ss_dssp             EEEEC-SSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC------SSSCEEEEECT-TSC
T ss_pred             EEEEC-CCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeC------CCCEEEEEECC-CCC
Confidence            99999 8898888877899999999752     11  2235689999999998777664      233 6777763 455


Q ss_pred             EEEEEee
Q 017421          346 TFYSFMV  352 (372)
Q Consensus       346 ~~~~~~~  352 (372)
                      .+..+..
T Consensus       240 ~~~~~~~  246 (286)
T 1q7f_A          240 LISALES  246 (286)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcc
Confidence            5554433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=1.7e-13  Score=119.54  Aligned_cols=196  Identities=13%  Similarity=0.098  Sum_probs=140.2

Q ss_pred             CCCceEEEEE-CCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          123 TTSRAYVSQF-SADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       123 ~~~~v~~~~~-s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      +...+.++++ .++++++++... ++.|.+|+. ++..+...  ...+...+.+++++|+++++++...++.|.+||...
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~--~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g  151 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKF--GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG  151 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEE--CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEe--cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC
Confidence            4467899999 577877776643 789999994 45444332  122334588999999999888777789999999753


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--CCCeEEEEEe
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDVNTVCFG  278 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s  278 (372)
                       +......  ..            ++...+..++++|+|+++++...++.|.+||.. ++.+..+..+  ...+..++++
T Consensus       152 -~~~~~~~--~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d  215 (286)
T 1q7f_A          152 -NVLHKFG--CS------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGIN  215 (286)
T ss_dssp             -CEEEEEE--CT------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEEC
T ss_pred             -CEEEEeC--CC------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEEC
Confidence             3221111  00            122368899999999988888888999999985 5555566433  3578999999


Q ss_pred             CCCCCEEEEEeCCC-eEEEEeccc-----ccC--CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          279 DESGHLIYSGSDDN-LCKVNSVLL-----LTR--SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       279 p~~~~~l~s~~~dg-~i~vwd~~~-----~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                       ++|+++++...++ .|.+||...     +..  ....+.+++++|+|+++++.       .|++|++|++....
T Consensus       216 -~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-------~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          216 -SNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS-------KDYRLYIYRYVQLA  282 (286)
T ss_dssp             -TTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-------TTTEEEEEECSCCC
T ss_pred             -CCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC-------CCCeEEEEEccccc
Confidence             8999888887776 999999651     112  22346799999999877664       57889999876543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.62  E-value=2.3e-13  Score=121.49  Aligned_cols=215  Identities=11%  Similarity=0.020  Sum_probs=150.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQA------------------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  178 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (372)
                      .-+.+.+++++|+|+++++...+                        +.|.+||..+++.....  ...+-..+..++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d   99 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSID   99 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEEC
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEEC
Confidence            35679999999999999888776                        47999999888654431  22333468899999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEe-CCCeEEEEEC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS-SDDCIYVYDL  256 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s-~dg~i~iwd~  256 (372)
                      |+++++++...++.|++||...... ....+...     ..+....++......++++| +++++++.+ .++.|++|| 
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~-----~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-  172 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEG-PLLILGRS-----MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-  172 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSC-CSEEESBT-----TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeE-EEEEeccc-----CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence            9999888888899999999865421 11111000     00000113445789999999 788888886 689999999 


Q ss_pred             CCCeEEEEeecCC----------CCeEEEEEeCCC-CCEEEEEeCCCeEEEEecccc--------cCCCCCeeEEEeccC
Q 017421          257 EANKLSLRILAHT----------SDVNTVCFGDES-GHLIYSGSDDNLCKVNSVLLL--------TRSINPCNKYLFNPC  317 (372)
Q Consensus       257 ~~~~~~~~~~~~~----------~~v~~~~~sp~~-~~~l~s~~~dg~i~vwd~~~~--------~~~~~~v~~~~~s~~  317 (372)
                      .+++.+..+....          ..+..++++ ++ +.++++...++.|++||..+.        ..+...+..++|+| 
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d-~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-  250 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV-PHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-  250 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEE-TTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE-CCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-
Confidence            5576666664222          348899999 76 777788788999999998632        23456788999999 


Q ss_pred             CCeEEEEeeeeEE---EeeceEEEeecccceEEEEE
Q 017421          318 NKYLIIYLILVIS---IYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       318 g~~l~~~~~~~~~---~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +..+.+..  .+.   ..+..+++|++.+++.+..+
T Consensus       251 g~~~~~~g--~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          251 GFLFAVNG--KPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             TEEEEEEC--CCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             CEEEEeCC--CEEeccCCCcEEEEEEcCCCeEEEEE
Confidence            44333321  111   12458999999999888776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=3.1e-13  Score=133.39  Aligned_cols=206  Identities=13%  Similarity=0.098  Sum_probs=140.6

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe-----
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI-----  192 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----  192 (372)
                      |...+..++|||||++||.+..++     .|++||+.+++.......  .  ..+..++|+||++.|+.++.++.     
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~--~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--R--VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--E--ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--C--cccceEEEEeCCCEEEEEEECCcccccc
Confidence            445688999999999998775543     899999999866543221  1  12677999999999999988765     


Q ss_pred             -----------EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-----CCeEEEEEC
Q 017421          193 -----------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDL  256 (372)
Q Consensus       193 -----------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-----dg~i~iwd~  256 (372)
                                 |++|++.++..........            ..|...+..+.|+|||++|+.++.     +..|++||+
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~  266 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEF------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL  266 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEecc------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEEC
Confidence                       9999998876321111010            013345788999999999987764     568999999


Q ss_pred             CC------Ce-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCC----CeEEEEecccc--------cCCCC--CeeEEEec
Q 017421          257 EA------NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVNSVLLL--------TRSIN--PCNKYLFN  315 (372)
Q Consensus       257 ~~------~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d----g~i~vwd~~~~--------~~~~~--~v~~~~~s  315 (372)
                      .+      +. ....+..+...+.. .|+ ++|..|+..+.+    +.|.+||+...        ..+..  .+..+.|+
T Consensus       267 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~  344 (710)
T 2xdw_A          267 QQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV  344 (710)
T ss_dssp             GGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred             cccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence            86      43 35566666666655 477 778777666543    36999998642        13333  57789998


Q ss_pred             cCCCeEEEEeeeeEEEeec--eEEEeecccceEEEEEee
Q 017421          316 PCNKYLIIYLILVISIYSP--NILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~~d~--~i~lw~~~~~~~~~~~~~  352 (372)
                      +++.+++++.      .|+  .|.+|+..+++.+..+..
T Consensus       345 ~~~~lv~~~~------~~g~~~l~~~~~~~g~~~~~l~~  377 (710)
T 2xdw_A          345 RSNFLVLCYL------HDVKNTLQLHDLATGALLKIFPL  377 (710)
T ss_dssp             TTTEEEEEEE------ETTEEEEEEEETTTCCEEEEECC
T ss_pred             cCCEEEEEEE------ECCEEEEEEEECCCCCEEEecCC
Confidence            7777666664      233  355666656765555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.59  E-value=2.2e-13  Score=123.29  Aligned_cols=234  Identities=11%  Similarity=-0.016  Sum_probs=140.3

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeeccc---CCc
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKS---LRW  170 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~---~~~  170 (372)
                      ..+.+++....+....+..+..+  .++|+|||++++++.          .++.|.+||+.+.+.+........   +..
T Consensus        31 ~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~  108 (361)
T 2oiz_A           31 SRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN  108 (361)
T ss_dssp             CEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred             CeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence            34444443222222233333333  899999999998876          256799999998766655433211   123


Q ss_pred             ceEEEEECCCCCEEEEEeC--CCeEEEEECCCCceeee-cceeecccccceeccCCC-----CccccEEEEEE-------
Q 017421          171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADDG-----GYSFGIFSLKF-------  235 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~h~~~i~~~~~-------  235 (372)
                      .+..++++|||++|+++..  ++.|.+||+.+++.... ...... .+..+.+....     ...+.+..+.+       
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            4678999999999998874  57899999999876543 222110 00001110000     00001111111       


Q ss_pred             --------------------cCCCCEEEEEeCCCeEEEEECCCCe--EEEEeec------CC----CCeEEEEEeCCCCC
Q 017421          236 --------------------STDGRELVAGSSDDCIYVYDLEANK--LSLRILA------HT----SDVNTVCFGDESGH  283 (372)
Q Consensus       236 --------------------sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~------~~----~~v~~~~~sp~~~~  283 (372)
                                          +|++..++..+.++.|.++|+..+.  ....+..      +.    .....++|+ ++++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~-~dg~  266 (361)
T 2oiz_A          188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH-RASG  266 (361)
T ss_dssp             EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE-TTTT
T ss_pred             eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe-cCCC
Confidence                                1233344455566778888876443  1122110      00    111237899 8877


Q ss_pred             EEEEEeC-----------CCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc--
Q 017421          284 LIYSGSD-----------DNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL--  344 (372)
Q Consensus       284 ~l~s~~~-----------dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~--  344 (372)
                      .++++..           .+.|.+||+.+.+      .+.  +.+++|+|||++|+++.      + ++|.+||..++  
T Consensus       267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n------~-~~v~v~D~~t~~l  337 (361)
T 2oiz_A          267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD------G-GNVNVYDISQPEP  337 (361)
T ss_dssp             EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC------S-SCEEEEECSSSSC
T ss_pred             eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC------C-CeEEEEECCCCcc
Confidence            7766543           3489999987543      333  89999999999998875      3 89999999999  


Q ss_pred             eEEEEE
Q 017421          345 RTFYSF  350 (372)
Q Consensus       345 ~~~~~~  350 (372)
                      +.+..+
T Consensus       338 ~~~~~i  343 (361)
T 2oiz_A          338 KLLRTI  343 (361)
T ss_dssp             EEEEEE
T ss_pred             eeeEEe
Confidence            888776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=4.2e-13  Score=117.78  Aligned_cols=195  Identities=10%  Similarity=0.032  Sum_probs=135.9

Q ss_pred             ccccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ..+..+.....+++|+|+++ +++++..++.|..|+..++  ...   ...+...+.+++++|+++++++...++.|.+|
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~---~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP---EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE---EESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE---EECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence            34445566788999999998 7778888899999999877  222   12334468999999999988777777899999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE----e-------------CCCeEEEEECCCC
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG----S-------------SDDCIYVYDLEAN  259 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~----s-------------~dg~i~iwd~~~~  259 (372)
                      |..+++..........            .....++.++++|+|+++++.    +             ..+.|..++.. +
T Consensus        96 d~~~g~~~~~~~~~~~------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (296)
T 3e5z_A           96 REPGGEWESIADSFEG------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G  162 (296)
T ss_dssp             CSTTCCEEEEECEETT------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred             cCCCCcEEEEeeccCC------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence            9988875433221110            011256789999999988873    2             13466666665 4


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-c--c-------cCCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-L--L-------TRSINPCNKYLFNPCNKYLIIYLILVI  329 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-~--~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~  329 (372)
                      +. ..+..+...+..++|+ |+++.+++.+.++.|.+|++. .  +       ......+.+++++++|++.++. .+.+
T Consensus       163 ~~-~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v  239 (296)
T 3e5z_A          163 TL-SAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGV  239 (296)
T ss_dssp             CE-EEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEE
T ss_pred             CE-EEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeE
Confidence            43 4445566778999999 999988777778999999985 1  1       1123445789999999866655 4334


Q ss_pred             EEee
Q 017421          330 SIYS  333 (372)
Q Consensus       330 ~~~d  333 (372)
                      .+||
T Consensus       240 ~~~~  243 (296)
T 3e5z_A          240 HVLT  243 (296)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            4433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.59  E-value=5e-14  Score=128.37  Aligned_cols=205  Identities=9%  Similarity=-0.055  Sum_probs=133.1

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE--EEECCCCCEEEEEe---------
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD--TSLSPDQRHLVYAS---------  188 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~---------  188 (372)
                      ..++...+..+.|+|||+.|+.++.++.|++||+.+++......   .+...+..  ..++|++++++...         
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  152 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ---VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPL  152 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee---chhhcccccceeECCCCCeeccccccCcccccc
Confidence            34455555567899999999999999999999999886543221   22223333  34589999887432         


Q ss_pred             -------------CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCC------
Q 017421          189 -------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD------  248 (372)
Q Consensus       189 -------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~d------  248 (372)
                                   .+..|.+||+.+++...+..                 +...+..+.|+| ||+.|+....+      
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~  215 (388)
T 3pe7_A          153 TDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-----------------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVD  215 (388)
T ss_dssp             CSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-----------------ESSCEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred             cccchhhhhhccCCcceEEEEECCCCceEEeec-----------------CCccccccEECCCCCCEEEEEEecCCCCCc
Confidence                         34689999999887544332                 223688999999 99988877653      


Q ss_pred             CeEEEEECCCCeEEEEeecCC--CCeEEEEEeCCCCCEEEEEeC-CC----eEEEEeccccc-----CCCC------Cee
Q 017421          249 DCIYVYDLEANKLSLRILAHT--SDVNTVCFGDESGHLIYSGSD-DN----LCKVNSVLLLT-----RSIN------PCN  310 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~l~s~~~-dg----~i~vwd~~~~~-----~~~~------~v~  310 (372)
                      ..|.++|+..++. ..+..+.  ..+..++|+ |+|+.|+..+. ++    .|.+||+.+.+     ....      ...
T Consensus       216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~  293 (388)
T 3pe7_A          216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWV-PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYD  293 (388)
T ss_dssp             CSEEEEETTSCCC-EESCCCCTTEEEEEEEEC-TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTT
T ss_pred             ceEEEEeCCCCce-EEeeeCCCCcccccceEC-CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCC
Confidence            3688888876544 3444444  257789999 99987765443 22    39999987432     1111      022


Q ss_pred             EEEeccCCCeEEEEeeee---EEEeeceEEEeecccceE
Q 017421          311 KYLFNPCNKYLIIYLILV---ISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~---~~~~d~~i~lw~~~~~~~  346 (372)
                      .+.|+|||+.|+......   ..--+..|.+||..+++.
T Consensus       294 ~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          294 GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             SSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            347999999888642110   001256899999988765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=7.6e-13  Score=116.14  Aligned_cols=187  Identities=13%  Similarity=0.092  Sum_probs=129.5

Q ss_pred             CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc-CCcceEEEEECCCCCEEEEE----e---
Q 017421          117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYA----S---  188 (372)
Q Consensus       117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~----~---  188 (372)
                      ...+..+...+.+++++|+|+++++...++.|.+||..++........... ....+..++++|+|+++++.    +   
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence            444556778899999999999888777778999999977754322111111 11246789999999988873    2   


Q ss_pred             ----------CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 017421          189 ----------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-  257 (372)
Q Consensus       189 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-  257 (372)
                                ..+.|..++.. +......                 .+......++|+|+++.+++.+.++.|.+||+. 
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-----------------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~  202 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPD-GTLSAPI-----------------RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA  202 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTT-SCEEEEE-----------------CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred             cccccccccCCCcEEEEECCC-CCEEEee-----------------cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence                      13456666655 4332211                 122367889999999988777778999999997 


Q ss_pred             CCeE---EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEe-ccCCCeEEEEe
Q 017421          258 ANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLF-NPCNKYLIIYL  325 (372)
Q Consensus       258 ~~~~---~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~-s~~g~~l~~~~  325 (372)
                      +++.   ...+..+...+..++++ ++|+++++.  ++.|.+||..     .+..+.. +++++| .|+++.|++++
T Consensus       203 ~g~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          203 RGETEYQGVHFTVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             SSCEEEEEEEECCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEE
T ss_pred             CCcCcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEc
Confidence            4543   23333345567789999 899877666  8889999975     1223444 899999 58998888775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.58  E-value=4e-13  Score=119.96  Aligned_cols=207  Identities=12%  Similarity=0.020  Sum_probs=142.1

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeec------ccCCcceEEEEECC-CCCEEEEEe-CCCe
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILA------KSLRWTVTDTSLSP-DQRHLVYAS-MSPI  192 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~  192 (372)
                      ++-..+.+++++|+|+++++...++.|++|+..... .+......      ..+-..+..++++| ++.++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            344678999999999988888888999999986542 22221100      22333588999999 788878776 6899


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEee--cCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL--AHT  269 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~  269 (372)
                      |++|+. .+...........  +    .....++......++++|+ ++++++...++.|++||..+++.+..+.  .+.
T Consensus       168 I~~~~~-~g~~~~~~~~~g~--~----~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~  240 (329)
T 3fvz_A          168 IVQFSP-SGKFVTQWGEESS--G----SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG  240 (329)
T ss_dssp             EEEECT-TSCEEEEECEECC--S----SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT
T ss_pred             EEEEcC-CCCEEEEeccCCC--C----CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC
Confidence            999994 4444322211100  0    0000123346889999998 7777787888999999999888888774  456


Q ss_pred             CCeEEEEEeCCCCCEEEEE-------eCCCeEEEEecccc---------cCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          270 SDVNTVCFGDESGHLIYSG-------SDDNLCKVNSVLLL---------TRSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~-------~~dg~i~vwd~~~~---------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      ..+.+++|+ | +..+++.       ..+..|++||+.+.         ..+...+..++++|+|.++++..      .+
T Consensus       241 ~~~~~~~~~-p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~------~~  312 (329)
T 3fvz_A          241 RNVFAISYI-P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA------HT  312 (329)
T ss_dssp             TCEEEEEEE-T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES------SS
T ss_pred             CCcceeeec-C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC------CC
Confidence            688999999 6 4444333       23458999997632         24556689999999996555553      46


Q ss_pred             ceEEEeeccc
Q 017421          334 PNILLDNYFL  343 (372)
Q Consensus       334 ~~i~lw~~~~  343 (372)
                      +.|++|+...
T Consensus       313 ~~I~~~~~~~  322 (329)
T 3fvz_A          313 NTVWKFTLTE  322 (329)
T ss_dssp             CCEEEEEEEE
T ss_pred             CEEEEEeCCc
Confidence            7888888754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=2.9e-14  Score=130.09  Aligned_cols=213  Identities=12%  Similarity=0.033  Sum_probs=133.0

Q ss_pred             eEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          127 AYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      +..++|+|||++|+.....   ..|.+|++.+++....   ..........+.|+||++.|+.++.++.|++||+.+++.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL---TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC---CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe---ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence            6678899999998876543   3788899988754321   222222233478999999999999999999999998875


Q ss_pred             eeecceeecc--cc--cceeccCCCCccccEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 017421          204 ESLANVTEIH--DG--LDFSAADDGGYSFGIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTSDVNT  274 (372)
Q Consensus       204 ~~~~~~~~~~--~~--~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~v~~  274 (372)
                      ..+.......  .+  +.+..... .-......+.|+|+++.++..     ..+..|.+||+.+++..... .+...+..
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~  192 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTK-LVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGH  192 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCc-cccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccccc
Confidence            4433311100  00  00000000 000000013578888877654     35668999999988765444 46678899


Q ss_pred             EEEeCC-CCCEEEEEeCC------CeEEEEecccc-----cCC--CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee
Q 017421          275 VCFGDE-SGHLIYSGSDD------NLCKVNSVLLL-----TRS--INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN  340 (372)
Q Consensus       275 ~~~sp~-~~~~l~s~~~d------g~i~vwd~~~~-----~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~  340 (372)
                      +.|+ | ++..|+..+.+      ..|.+||+...     ..+  ...+..+.|+|+|+.|+......- ..++.|.+||
T Consensus       193 ~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d  270 (396)
T 3c5m_A          193 PIYR-PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG-QTDRVIYKAN  270 (396)
T ss_dssp             EEEE-TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT-TCCEEEEEEC
T ss_pred             ceEC-CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCC-CccceEEEEE
Confidence            9999 6 78877766543      35888887522     122  224778899999998876631100 0014488888


Q ss_pred             cccceE
Q 017421          341 YFLLRT  346 (372)
Q Consensus       341 ~~~~~~  346 (372)
                      +.+++.
T Consensus       271 ~~~g~~  276 (396)
T 3c5m_A          271 PETLEN  276 (396)
T ss_dssp             TTTCCE
T ss_pred             CCCCCe
Confidence            877754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=2.4e-12  Score=114.83  Aligned_cols=206  Identities=10%  Similarity=0.057  Sum_probs=140.5

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC----CeEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVH  194 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~  194 (372)
                      .+..+...+.+++|+|+|++++++..++.|.+||..++......   ..+...+.+++++|+++++++...+    +.|.
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe---eCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            34556667899999999998888888899999999877543321   1234469999999999988877666    6899


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEeecC
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAH  268 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~  268 (372)
                      +||..++........  .            .+...+..++++|+|+++++...      .+.|..+|..+++... +..+
T Consensus       116 ~~d~~~~~~~~~~~~--~------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  180 (333)
T 2dg1_A          116 AATENGDNLQDIIED--L------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN  180 (333)
T ss_dssp             EECTTSCSCEEEECS--S------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred             EEeCCCCEEEEEEcc--C------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence            999987765322110  0            12236899999999988777653      3567777766554432 2233


Q ss_pred             CCCeEEEEEeCCCCCEEEE-EeCCCeEEEEeccc----cc--------CC--CCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          269 TSDVNTVCFGDESGHLIYS-GSDDNLCKVNSVLL----LT--------RS--INPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s-~~~dg~i~vwd~~~----~~--------~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      ...+..++|+ ++++.|+. .+.++.|.+||+..    +.        ..  ...+..++++++|++.++..      .+
T Consensus       181 ~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~------~~  253 (333)
T 2dg1_A          181 ISVANGIALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY------GQ  253 (333)
T ss_dssp             ESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE------TT
T ss_pred             CCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEc------CC
Confidence            3467899999 89886654 45678999999842    10        00  13577899999998766553      23


Q ss_pred             ceEEEeecccceEEEEE
Q 017421          334 PNILLDNYFLLRTFYSF  350 (372)
Q Consensus       334 ~~i~lw~~~~~~~~~~~  350 (372)
                      +.|.+|+. .++.+..+
T Consensus       254 ~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          254 GRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             TEEEEECT-TSCEEEEE
T ss_pred             CEEEEECC-CCCEEEEE
Confidence            56667766 34444443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=3.3e-12  Score=110.27  Aligned_cols=196  Identities=9%  Similarity=-0.005  Sum_probs=139.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...+.+++++++|+++++.. ++.|.+|+.........   .......+..++++++++++++...++.|.+|+..+...
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL---PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC---CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee---ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence            35688899999999666655 88999999876532211   112223588999999999777777788999997654432


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      .....                .....+..++++|+|+++++...++.|.+||............+...+.+++++ ++|.
T Consensus       142 ~~~~~----------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~g~  204 (270)
T 1rwi_B          142 TVLPF----------------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGT  204 (270)
T ss_dssp             EECCC----------------CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEEC-TTCC
T ss_pred             Eeecc----------------ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEEC-CCCC
Confidence            11100                111256789999999977777778899999998766543333344678999999 8888


Q ss_pred             EEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          284 LIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       284 ~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      ++++...++.|.+||.....      .+...+.+++++|+|+++++..      .++.|++++....+.
T Consensus       205 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~------~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          205 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR------GNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG------GGTEEEEECCCGGGS
T ss_pred             EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC------CCCEEEEEcCCCccc
Confidence            77777778899999986321      2235689999999998665553      467888888766543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=1.5e-11  Score=109.74  Aligned_cols=205  Identities=10%  Similarity=-0.056  Sum_probs=141.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc--cCCcceEEEEECCCCCEEEEEe--CCCeEEEEECC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYAS--MSPIVHIVDVG  199 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~  199 (372)
                      ...+..++++++++.+++...++.|.+||+.+++.........  +....+..+++  ++..++++.  .++.|.++|+.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC
Confidence            4678899999998655555478999999999886554432221  00113556677  445555554  48899999999


Q ss_pred             CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCeEEEEeecC-
Q 017421          200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------DCIYVYDLEANKLSLRILAH-  268 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~-  268 (372)
                      +++........                 .....+.++|+|++++++..+          +.|.++|..+++....+... 
T Consensus       161 t~~~~~~i~~g-----------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~  223 (328)
T 3dsm_A          161 TDKVVDELTIG-----------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL  223 (328)
T ss_dssp             TTEEEEEEECS-----------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred             CCeEEEEEEcC-----------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence            98764433211                 134578899999877776654          78999999999887776532 


Q ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccccC--------CCCCeeEEEeccCCCeEEEEe-eeeEEEeeceEEEe
Q 017421          269 TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTR--------SINPCNKYLFNPCNKYLIIYL-ILVISIYSPNILLD  339 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~v~~~~~s~~g~~l~~~~-~~~~~~~d~~i~lw  339 (372)
                      ...+..++++ |+++.|+++..  .|.+||+.+.+-        .......++++|++..|.++. ...  ..++.|.+|
T Consensus       224 g~~p~~la~~-~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y--~~~~~V~v~  298 (328)
T 3dsm_A          224 GDWPSEVQLN-GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY--QQQGIVYRY  298 (328)
T ss_dssp             TCCCEEEEEC-TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS--SSEEEEEEE
T ss_pred             CCCceeEEEe-cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc--ccCCEEEEE
Confidence            3468999999 88888887754  899999864321        135678999999655555542 000  136788999


Q ss_pred             ecccceEEEEEeee
Q 017421          340 NYFLLRTFYSFMVH  353 (372)
Q Consensus       340 ~~~~~~~~~~~~~h  353 (372)
                      |.. ++.+..+.+-
T Consensus       299 d~~-g~~~~~i~~G  311 (328)
T 3dsm_A          299 SPQ-GKLIDEFYVG  311 (328)
T ss_dssp             CTT-CCEEEEEEEE
T ss_pred             CCC-CCEEEEEEec
Confidence            988 8888877543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.51  E-value=2.8e-12  Score=114.98  Aligned_cols=182  Identities=14%  Similarity=0.110  Sum_probs=121.3

Q ss_pred             CceEEEEECCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---------
Q 017421          125 SRAYVSQFSADGSLFVAGFQA---S--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---------  190 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  190 (372)
                      ..+..++|+|||++|+..+.+   +  .|.+|++.+++.... .   .... +..+.|+||++.|+.++.+         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-~---~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-L---EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE-E---EESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE-E---cCCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            568889999999999887653   2  488888887754332 1   2223 8899999999999887632         


Q ss_pred             ------------------CeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC--
Q 017421          191 ------------------PIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--  249 (372)
Q Consensus       191 ------------------g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg--  249 (372)
                                        ..|++||+.+++. ..+..                  . .+..+.|+||| +++++..+.  
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~------------------~-~~~~~~~spdg-~~~~~~~~~~~  193 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK------------------P-RFSSGIWHRDK-IVVNVPHREII  193 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEEEEE------------------E-TTCEEEEETTE-EEEEEECCCSS
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEeeecC------------------C-CcccccCCCCe-EEEEEeccccc
Confidence                              5689999988765 22211                  0 35678999999 777775542  


Q ss_pred             -----eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC--------CeEEEEecc-----cccCCCCCeeE
Q 017421          250 -----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD--------NLCKVNSVL-----LLTRSINPCNK  311 (372)
Q Consensus       250 -----~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d--------g~i~vwd~~-----~~~~~~~~v~~  311 (372)
                           ...+|.+.+++. ..+..+ ..+..+  + |+|+.|+.++.+        ..|.+|| .     ....+...+..
T Consensus       194 ~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--s-pdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~  267 (347)
T 2gop_A          194 PQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--D-SDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQ  267 (347)
T ss_dssp             CCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--E-ECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEE
T ss_pred             ccccccccEEEeCCCce-EEeccC-cceeeE--C-CCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCC
Confidence                 334443335554 344444 455544  8 899988877644        3688887 2     11244566776


Q ss_pred             -EEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          312 -YLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       312 -~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                       +.|+ +| +++++.      .++.++|| +.+++.
T Consensus       268 ~~~~s-dg-~~~~~~------~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          268 AKIKD-GK-VYFTLF------EEGSVNLY-IWDGEI  294 (347)
T ss_dssp             EEEET-TE-EEEEEE------ETTEEEEE-EESSSE
T ss_pred             ccEEc-Cc-EEEEEe------cCCcEEEE-EcCCce
Confidence             8999 88 666654      46778888 765543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=4.9e-13  Score=120.64  Aligned_cols=169  Identities=12%  Similarity=0.022  Sum_probs=127.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--------EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      .++.+++++...++++|+.++ +.||++.....        ... .....+.. |+.++|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999874 66798754320        111 01223455 999999  99999998 889999999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      +.+........                .|..++.++.+.+.  .+++++.||.|.+||++++....    +...|+|++|
T Consensus       113 v~sl~~~~~~~----------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W  170 (388)
T 1xip_A          113 LEELSEFRTVT----------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV  170 (388)
T ss_dssp             SSSTTCEEEEE----------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred             chhhhccCccc----------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence            98765322211                13346777777654  38888999999999999887643    3458999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeccccc-----------------CCCCCeeEEEeccCCCeEEEEe
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLLLT-----------------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~~~-----------------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      + |+|  ++.|..||++++|+.....                 +|...|.++.|.++++++++..
T Consensus       171 S-pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          171 T-NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             C-SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             c-CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9 888  7789999999999876322                 2678899999999999998763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=4e-12  Score=110.45  Aligned_cols=187  Identities=12%  Similarity=0.030  Sum_probs=136.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421          135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  213 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  213 (372)
                      .++.|++++.++.|.+||.++++.+.+...   +. ..+.++.++|+|+.++  +.++.|..||. +++.+......   
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~---~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~---   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL---EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP---   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC---CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC---
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC---CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC---
Confidence            467899999999999999989977766332   22 3578899999999888  45788999999 67754433321   


Q ss_pred             cccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEeec------CCCCeEEEEEeCCCCCEEE
Q 017421          214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIY  286 (372)
Q Consensus       214 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~sp~~~~~l~  286 (372)
                                  ....+.++.+.|+|+++++.+. ++.|..+|. +++.+..+..      +......+++. ++|++++
T Consensus        75 ------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv  140 (276)
T 3no2_A           75 ------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLV  140 (276)
T ss_dssp             ------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEE
T ss_pred             ------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEE
Confidence                        1125788899999999999887 778888886 6777666642      11234556777 8999999


Q ss_pred             EEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          287 SGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       287 s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      +...++.|..||.. .+     .....+.++.+.++|+.++++.+      ++.|..+|..+|+.+..+.
T Consensus       141 ~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          141 PLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEE
T ss_pred             EecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEec
Confidence            99999999999986 32     22245677888999998887742      3456666666666666554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.49  E-value=2.3e-13  Score=124.14  Aligned_cols=195  Identities=11%  Similarity=0.010  Sum_probs=128.7

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE-------------------EEECCCCCEEEEE--
Q 017421          129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-------------------TSLSPDQRHLVYA--  187 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~--  187 (372)
                      .+.|+|||++|+.++.++.|++|++.++....... .  +......                   +.|+|+++.++..  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-V--DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-C--CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-c--ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            37899999999999999999999998875432211 1  1111112                   4578888877654  


Q ss_pred             ---eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCC------CeEEEEECC
Q 017421          188 ---SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD------DCIYVYDLE  257 (372)
Q Consensus       188 ---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~d------g~i~iwd~~  257 (372)
                         ..+..|.+||+.+++...+..                 +...+..+.|+| +++.|+..+.+      ..|.+||+.
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~~~~-----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGELEVIHQ-----------------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED  224 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCEEEEEE-----------------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred             ccCCCcceEEEEECCCCcEEeecc-----------------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence               356789999999887544331                 223688999999 78877766543      368899987


Q ss_pred             CCeEEEEeecC--CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEecccccC----CCCCeeEEEecc-CCCeEEEEe
Q 017421          258 ANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSDD-----NLCKVNSVLLLTR----SINPCNKYLFNP-CNKYLIIYL  325 (372)
Q Consensus       258 ~~~~~~~~~~~--~~~v~~~~~sp~~~~~l~s~~~d-----g~i~vwd~~~~~~----~~~~v~~~~~s~-~g~~l~~~~  325 (372)
                      .++. ..+..+  ...+..++|+ |+|+.|+.++.+     +.|++||+.+...    ...... +.|+| +|++++.+.
T Consensus       225 ~~~~-~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          225 GSNV-RKIKEHAEGESCTHEFWI-PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             SCCC-EESSCCCTTEEEEEEEEC-TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEE
T ss_pred             CCce-eEeeccCCCccccceEEC-CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEec
Confidence            6653 333333  2257889999 999977766543     4499999864321    111223 89999 999887653


Q ss_pred             eee-EE---------EeeceEEEeecccceE
Q 017421          326 ILV-IS---------IYSPNILLDNYFLLRT  346 (372)
Q Consensus       326 ~~~-~~---------~~d~~i~lw~~~~~~~  346 (372)
                      ... +.         -.+..|.+||..+++.
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          302 CDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCcceeeccccccccCCCCcEEEEecccCce
Confidence            110 00         0236788999887764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.48  E-value=3.4e-12  Score=125.60  Aligned_cols=203  Identities=10%  Similarity=0.005  Sum_probs=131.9

Q ss_pred             CCCCceEEEEECCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe----
Q 017421          122 QTTSRAYVSQFSADGSLFVAG-----FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----  192 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----  192 (372)
                      +|...+.+++|||||++||.+     +.+..|++||+.+++.+.. ......  ....++|+|||+.|+.++.+..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence            455678999999999999843     3446899999998854311 011111  1267999999999999988765    


Q ss_pred             ---------EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC
Q 017421          193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEAN  259 (372)
Q Consensus       193 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg----~i~iwd~~~~  259 (372)
                               |++|++.++..........            ..+...+..+.|+|||++|+.++.++    .|++||..++
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~  262 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHER------------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK  262 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECC------------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEec------------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence                     9999998876321111100            02334788999999999998777665    6777776555


Q ss_pred             eEEEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccccc--------CC--CCCeeEEEeccCCCeEEEEee
Q 017421          260 KLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLLLT--------RS--INPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~~~--------~~--~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      +. ..+..+...+....++  +|.+++...   .++.|.+||+....        .+  ...+..++|+ ++.++++.. 
T Consensus       263 ~~-~~l~~~~~~~~~~~~~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~-  337 (695)
T 2bkl_A          263 DF-RLLVKGVGAKYEVHAW--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL-  337 (695)
T ss_dssp             SC-EEEEECSSCCEEEEEE--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE-
T ss_pred             ce-EEeecCCCceEEEEec--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE-
Confidence            43 4455566666677674  444555544   25789999985421        22  3457778887 555555553 


Q ss_pred             eeEEEeeceEEEeecc-cceEEEE
Q 017421          327 LVISIYSPNILLDNYF-LLRTFYS  349 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~-~~~~~~~  349 (372)
                           .|+..+||.+. .++....
T Consensus       338 -----~dg~~~l~~~~~~g~~~~~  356 (695)
T 2bkl_A          338 -----KDATSEVRVATLKGKPVRT  356 (695)
T ss_dssp             -----ETTEEEEEEEETTCCEEEE
T ss_pred             -----ECCEEEEEEEeCCCCeeEE
Confidence                 35666666554 3444433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=1.6e-11  Score=106.63  Aligned_cols=204  Identities=9%  Similarity=-0.020  Sum_probs=143.8

Q ss_pred             CceeEeeeeeCCCCCccccCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421          103 DCCHMLSRYLPVNGPWPVDQTT-SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (372)
                      +..+.+++....+..+.+..+. ..+.++.++|+|++|+  +.++.|..||. +++.+.....  +....+.++.+.++|
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~~~~~~~~~~~dG   88 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA--PAGCEMQTARILPDG   88 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTTCEEEEEEECTTS
T ss_pred             CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCCccccccEECCCC
Confidence            3344444433444445555444 4688999999999888  45678999998 6766665432  222358889999999


Q ss_pred             CEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 017421          182 RHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  260 (372)
Q Consensus       182 ~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  260 (372)
                      +.+++.+. ++.|..+|. +++...........          .++......+++.++|+++++...++.|..||.+ ++
T Consensus        89 ~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~----------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           89 NALVAWCGHPSTILEVNM-KGEVLSKTEFETGI----------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             CEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            99999887 778888886 45543333221110          0122244556788999999999999999999998 99


Q ss_pred             EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------C------CCCCeeEEEeccCCCeEEEEe
Q 017421          261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------R------SINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~------~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .+.++... ..+.++... ++|+++++++.++.|..+|..+.+      .      .-..+..+...++|..+++..
T Consensus       157 ~~w~~~~~-~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          157 LLNSVKLS-GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEECS-SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEECC-CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            98888754 456677787 899999999888899999887332      1      112378888999999888773

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.46  E-value=3.3e-11  Score=114.87  Aligned_cols=193  Identities=12%  Similarity=-0.039  Sum_probs=140.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC--CCceeeecceee
Q 017421          134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTE  211 (372)
Q Consensus       134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~  211 (372)
                      |.+.++++...++.|.++|..+++.+.....    ...+..+.|+||++++++++.++.|.+||+.  +++......  .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~----g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--I  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--C
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC----CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--c
Confidence            4455667777889999999999876655322    2247789999999999999999999999996  555432221  1


Q ss_pred             cccccceeccCCCCccccEEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCeEEEEeecC-----------CCCeEEE
Q 017421          212 IHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAGSS-DDCIYVYDLEANKLSLRILAH-----------TSDVNTV  275 (372)
Q Consensus       212 ~~~~~~~~~~~~~~h~~~i~~~~~s----p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~  275 (372)
                      .               .....++|+    |||++++++.. +++|.++|..+.+.+..+...           ...+..+
T Consensus       239 G---------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i  303 (567)
T 1qks_A          239 G---------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  303 (567)
T ss_dssp             C---------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             C---------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence            1               146789999    69998877655 589999999999888776521           1257788


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                      ..++....+++....+|.|.++|.....       ........+.|+|+|++++++..     .++.|.++|..+++.+.
T Consensus       304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~  378 (567)
T 1qks_A          304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVA  378 (567)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEE
Confidence            8883334455566677999999976421       22345668899999999887742     36778888888888765


Q ss_pred             EEee
Q 017421          349 SFMV  352 (372)
Q Consensus       349 ~~~~  352 (372)
                      ...+
T Consensus       379 ~i~v  382 (567)
T 1qks_A          379 IEDT  382 (567)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            5443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.45  E-value=5.2e-11  Score=106.10  Aligned_cols=184  Identities=15%  Similarity=0.058  Sum_probs=126.0

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC------CC
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------SP  191 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg  191 (372)
                      .+...+.+++++|+|+++++...+    +.|.+||..++..... .........+.++.++|+++++++...      .+
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI-IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE-ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE-EccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            456789999999999988877666    6899999887643321 111123346899999999988776653      35


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEEECCC-CeEEEE-----
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEA-NKLSLR-----  264 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iwd~~~-~~~~~~-----  264 (372)
                      .|..+|..+++......                 ....+..++|+|+++.|+ +.+.++.|.+||+.+ +.....     
T Consensus       163 ~l~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          163 GVYYVSPDFRTVTPIIQ-----------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             EEEEECTTSCCEEEEEE-----------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             eEEEEeCCCCEEEEeec-----------------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence            67677766554432211                 112578899999998664 445678999999964 332211     


Q ss_pred             ---eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----ccCCC------CCeeEEEeccCCCeEEEEe
Q 017421          265 ---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LTRSI------NPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       265 ---~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~~~~------~~v~~~~~s~~g~~l~~~~  325 (372)
                         +.++ ..+..++++ ++|+++++...++.|.+||...     +....      ..+.+++|+|+++.|++++
T Consensus       226 ~~~~~~~-~~~~~i~~d-~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~  298 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  298 (333)
T ss_dssp             EEECCSS-SEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEecCCC-CCCCceEEC-CCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence               1122 367889999 8999888887889999999751     11121      2589999999987776553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.44  E-value=1.1e-11  Score=111.07  Aligned_cols=166  Identities=11%  Similarity=0.150  Sum_probs=115.8

Q ss_pred             CceEEEEECCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---C-
Q 017421          125 SRAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---P-  191 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-  191 (372)
                      ..+..+++  ||++++...         .++.|.+|++.++... .   .    ..+..+.|+|||++|+.++.+   + 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~---l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-F---I----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-E---E----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-E---c----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            45677778  898887642         2567999999887532 2   1    358899999999999987653   3 


Q ss_pred             -eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----------------------
Q 017421          192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------------------  248 (372)
Q Consensus       192 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----------------------  248 (372)
                       .|.+|++.+++...+..                 +.. +..+.|+|||+.|+.++.+                      
T Consensus        85 ~~l~~~~~~~g~~~~l~~-----------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~  146 (347)
T 2gop_A           85 SEIWVADLETLSSKKILE-----------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF  146 (347)
T ss_dssp             EEEEEEETTTTEEEEEEE-----------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred             ceEEEEECCCCceEEEEc-----------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence             48888988876544332                 112 8889999999998887642                      


Q ss_pred             -----CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-------eEEEEeccc-----ccCCCCCeeE
Q 017421          249 -----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVNSVLL-----LTRSINPCNK  311 (372)
Q Consensus       249 -----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-------~i~vwd~~~-----~~~~~~~v~~  311 (372)
                           ..|.+||+.+++.+..+.. . .+..++|+ |+| +++++..++       ...||.+..     +..+ ..+..
T Consensus       147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~  221 (347)
T 2gop_A          147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA  221 (347)
T ss_dssp             ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE
T ss_pred             ccCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee
Confidence                 5699999998887455554 3 78899999 899 777776542       345554431     1122 33333


Q ss_pred             EEeccCCCeEEEEe
Q 017421          312 YLFNPCNKYLIIYL  325 (372)
Q Consensus       312 ~~~s~~g~~l~~~~  325 (372)
                        ++|+|+.|+..+
T Consensus       222 --~spdg~~l~~~~  233 (347)
T 2gop_A          222 --VDSDGERILLYG  233 (347)
T ss_dssp             --EEECSSCEEEEE
T ss_pred             --ECCCCCEEEEEE
Confidence              499999888764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.43  E-value=2.3e-11  Score=104.90  Aligned_cols=192  Identities=10%  Similarity=-0.017  Sum_probs=130.3

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      ...+++++++|++++ +...++.|.+|+..+......   .......+.+++++++++++++.. ++.|.+||..+....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL---PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC---CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE---eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            788999999999777 546778999999765432211   122223578899999998666655 889999998765432


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCE
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL  284 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~  284 (372)
                      ....                .....+..++++|+|+++++...++.|.+|+..+.............+.+++++ ++|++
T Consensus       101 ~~~~----------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l  163 (270)
T 1rwi_B          101 VLPF----------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV  163 (270)
T ss_dssp             ECCC----------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCE
T ss_pred             eeec----------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCE
Confidence            1110                111368899999999988877778999999876554433222333467899999 88987


Q ss_pred             EEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          285 IYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       285 l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +++...++.|.+||.....      .....+.+++++++|.+.++..      .++.|.+|+....
T Consensus       164 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~------~~~~v~~~~~~~~  223 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH------NTNQVVKLLAGST  223 (270)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET------TTSCEEEECTTCS
T ss_pred             EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC------CCCcEEEEcCCCC
Confidence            7777778899999986321      2225678999999996555542      2455666665443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.39  E-value=8.7e-11  Score=106.15  Aligned_cols=187  Identities=15%  Similarity=0.172  Sum_probs=120.5

Q ss_pred             CceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCC-
Q 017421          125 SRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGS-  200 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-  200 (372)
                      .....++|+|||++|+++..  ++.|.+||+.+++.+.......+    ...+.+.|++ ..+++.+.||.+.+|++.. 
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence            45678999999999988764  57899999999865543111111    2224455654 4566666777777777654 


Q ss_pred             Cceeeecc---eeeccc------------ccceec--------cCCC-C-------------------ccccEEEEEEcC
Q 017421          201 GTMESLAN---VTEIHD------------GLDFSA--------ADDG-G-------------------YSFGIFSLKFST  237 (372)
Q Consensus       201 ~~~~~~~~---~~~~~~------------~~~~~~--------~~~~-~-------------------h~~~i~~~~~sp  237 (372)
                      ++......   ......            ...+..        +... .                   .......++|+|
T Consensus       184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~  263 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR  263 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred             CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence            33220000   000000            000000        0000 0                   000111278999


Q ss_pred             CCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc--c-
Q 017421          238 DGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL--T-  303 (372)
Q Consensus       238 ~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~--~-  303 (372)
                      +++.++++..           ...|.+||+.+++.+.++..+.  +.+++|+ |+|++|++++. +.|.+||..+.  + 
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s-pdg~~l~v~n~-~~v~v~D~~t~~l~~  339 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID-QQRNLMLTLDG-GNVNVYDISQPEPKL  339 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE-TTTTEEEEECS-SCEEEEECSSSSCEE
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC-CCCCEEEEeCC-CeEEEEECCCCccee
Confidence            9887776543           3489999999999999998776  8999999 99999998886 99999998876  3 


Q ss_pred             -----CCCCCeeEEEeccCCC
Q 017421          304 -----RSINPCNKYLFNPCNK  319 (372)
Q Consensus       304 -----~~~~~v~~~~~s~~g~  319 (372)
                           ........++++|+|.
T Consensus       340 ~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          340 LRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEETTSCSSEEEEEECCCSC
T ss_pred             eEEeccCCCCcEEEEecCCCC
Confidence                 4556778999999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.39  E-value=4e-11  Score=118.28  Aligned_cols=200  Identities=9%  Similarity=0.007  Sum_probs=131.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCc----------------EEEEeCCCCeEEEEee-ecccCCcceEEEEECCCCCEEEEEeC
Q 017421          127 AYVSQFSADGSLFVAGFQASQ----------------IRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~----------------i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      +..++|+|||+.|+.++.++.                |++|++.++....... ....+...+..+.|+|||++|+.++.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            667999999999999887766                9999998764211111 12234445789999999999988764


Q ss_pred             -----CCeEEEEECCC------CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEE
Q 017421          190 -----SPIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVY  254 (372)
Q Consensus       190 -----dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iw  254 (372)
                           +..|++||+.+      +... ...+..              +...+.. .|+|+|+.|+..+..    +.|.+|
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~l~~--------------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILK-WVKLID--------------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCC-CEEEEC--------------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             ccCCCccEEEEEECcccccccCCccc-eEEeeC--------------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence                 56899999976      4210 111110              1123333 488999888766653    369999


Q ss_pred             ECCCCe--EEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCe--EEEEeccc------ccCCCCCeeEEEeccCCCeEE
Q 017421          255 DLEANK--LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNL--CKVNSVLL------LTRSINPCNKYLFNPCNKYLI  322 (372)
Q Consensus       255 d~~~~~--~~~~~~~~~~--~v~~~~~sp~~~~~l~s~~~dg~--i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~  322 (372)
                      |+.++.  ....+..|..  .+..++|+ +++.++++...|+.  |.+||+..      +..+...+..+.++|++..++
T Consensus       317 d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          317 DFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             ETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             eCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            998764  2244444543  67889998 78888888888885  55566522      223456678899999998766


Q ss_pred             EEeeeeEEEeeceEEEeecccce
Q 017421          323 IYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       323 ~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      ......  .-.+++.+||+.+++
T Consensus       396 ~~~ss~--~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          396 YQFTSF--LSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEECS--SCCCEEEEEETTSSS
T ss_pred             EEEeCC--CCCCEEEEEECCCCc
Confidence            442110  013566667666554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=6e-11  Score=117.55  Aligned_cols=200  Identities=12%  Similarity=0.063  Sum_probs=127.4

Q ss_pred             CCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe-----
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI-----  192 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----  192 (372)
                      |...+..++|||||++||.+..+     ..|++||+.+++.+....    ....+..++|+|| +.|+.+..++.     
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence            33468899999999999877543     369999999986654311    1112467899999 99998877554     


Q ss_pred             ---------EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 017421          193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEA  258 (372)
Q Consensus       193 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg-----~i~iwd~~~  258 (372)
                               |++|++.++..........            ..+...+..+.|+|||++|+..+.++     .|++||+.+
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFAT------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEecc------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence                     8899987765321111100            01223578999999999988777543     799999987


Q ss_pred             C--eEEEEeecCCCCeEEEEEeCCCCCEEEEEeC----CCeEEEEecccc--------cCCCCCeeEEEeccCCCeEEEE
Q 017421          259 N--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD----DNLCKVNSVLLL--------TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       259 ~--~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~----dg~i~vwd~~~~--------~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +  ++...+..+...+... ++ ++|+.|+..+.    ++.|.+||+...        ..+...+..+.|+ ++.++++.
T Consensus       304 ~~~~~~~~l~~~~~~~~~~-~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~  380 (741)
T 1yr2_A          304 GKIGPVTALIPDLKAQWDF-VD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASY  380 (741)
T ss_dssp             TEECCCEEEECSSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEE
T ss_pred             CCCcccEEecCCCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEE
Confidence            7  3145565565555555 44 67887777765    345999997642        1233345667776 44444444


Q ss_pred             eeeeEEEeeceEEEeecc-cceEEE
Q 017421          325 LILVISIYSPNILLDNYF-LLRTFY  348 (372)
Q Consensus       325 ~~~~~~~~d~~i~lw~~~-~~~~~~  348 (372)
                      .      .|+..+||.+. +++..+
T Consensus       381 ~------~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          381 I------HDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             E------ETTEEEEEEEETTSCEEE
T ss_pred             E------ECCEEEEEEEeCCCCcee
Confidence            3      35555555443 344333

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.39  E-value=5e-11  Score=117.26  Aligned_cols=196  Identities=12%  Similarity=0.019  Sum_probs=128.0

Q ss_pred             EEEEECCCCCEEEEEeCCCc-------------EEEEeCCCCeEEEE-eeecccCCcceEEEEECCCCCEEEEEeCCC--
Q 017421          128 YVSQFSADGSLFVAGFQASQ-------------IRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSP--  191 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg~-------------i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--  191 (372)
                      ..++|+|||+.|+.++.+..             |++|++.++..... ......+...+..+.|+|||++|+.++.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            67899999999999988776             99999987742111 112334445688999999999998887665  


Q ss_pred             --eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeE---EE
Q 017421          192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEANKL---SL  263 (372)
Q Consensus       192 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s---~dg~i~iwd~~~~~~---~~  263 (372)
                        .|++|+..++....+..                 +...+....+ ++|.+++.+.   .++.|.+||+.++..   ..
T Consensus       251 ~~~l~~~~~~~~~~~~l~~-----------------~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~  312 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVK-----------------GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE  312 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEE-----------------CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred             ceEEEEEcCCCCceEEeec-----------------CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence              67777665554332221                 1123444555 5666444433   257899999987652   23


Q ss_pred             EeecC-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCC-CCCeeEEEeccCCCeEEEEeeeeEEEeec
Q 017421          264 RILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRS-INPCNKYLFNPCNKYLIIYLILVISIYSP  334 (372)
Q Consensus       264 ~~~~~-~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~d~  334 (372)
                      .+..+ ...+..++|+  ++.++++...|+..+||.+..       +..+ ...+..+.++|+++.++......  .-++
T Consensus       313 l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~--~~P~  388 (695)
T 2bkl_A          313 IVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF--TTPR  388 (695)
T ss_dssp             EECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET--TEEE
T ss_pred             EecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC--CCCC
Confidence            33333 4467888887  677888889999988886541       1122 45677888999998776542110  0245


Q ss_pred             eEEEeecccce
Q 017421          335 NILLDNYFLLR  345 (372)
Q Consensus       335 ~i~lw~~~~~~  345 (372)
                      ++++||+.+++
T Consensus       389 ~v~~~d~~~g~  399 (695)
T 2bkl_A          389 QIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEETTTCC
T ss_pred             EEEEEECCCCc
Confidence            67777776654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.38  E-value=8.3e-11  Score=104.81  Aligned_cols=195  Identities=10%  Similarity=-0.059  Sum_probs=133.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      .....+.+. +++++++...++.|.+||..+++.+....    ....+..++++++++.+++...++.|.+||..+++..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            456778874 35555666667999999999987766542    1235889999988854444447899999999988764


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      ........           .+.......+++ .+++++++.. .++.|.++|+.+++.+..+... .....++++ ++|+
T Consensus       119 ~~i~~g~~-----------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~-~dG~  184 (328)
T 3dsm_A          119 GYIECPDM-----------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMD-KYNK  184 (328)
T ss_dssp             EEEECTTC-----------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEEC-TTSE
T ss_pred             EEEEcCCc-----------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEc-CCCC
Confidence            43322110           011113445666 3444444443 4889999999999988877643 345788998 8998


Q ss_pred             EEEEEeCC----------CeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          284 LIYSGSDD----------NLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       284 ~l~s~~~d----------g~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +++++..+          +.|.++|..+.+       .....+..++|+|+++.|+++.        ..|.+||..+++.
T Consensus       185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--------~~v~~~d~~t~~~  256 (328)
T 3dsm_A          185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--------NDIWRMPVEADRV  256 (328)
T ss_dssp             EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES--------SSEEEEETTCSSC
T ss_pred             EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc--------cEEEEEECCCCce
Confidence            77777654          789999987432       1123679999999999998873        2666777766653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.5e-11  Score=111.05  Aligned_cols=136  Identities=10%  Similarity=0.111  Sum_probs=106.5

Q ss_pred             ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421          120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  199 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  199 (372)
                      ...++. |+.++|  |+++|+++ .++.|++||+.+......   ...+..++.++.+.+..  +++++.||.|.+||+.
T Consensus        84 ~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~---~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           84 EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRT---VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR  154 (388)
T ss_dssp             EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEE---EEECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred             EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCc---cceeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence            345677 999999  99999998 789999999976543222   23444568887777643  8888999999999999


Q ss_pred             CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEe------e---cC
Q 017421          200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL--SLRI------L---AH  268 (372)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~--~~~~------~---~~  268 (372)
                      .+.....                    ...|++++|+|+|  ++.|..||++++|+...++.  ..++      .   +|
T Consensus       155 ~~~~~~~--------------------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~  212 (388)
T 1xip_A          155 TKSTKQL--------------------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE  212 (388)
T ss_dssp             TCCEEEE--------------------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT
T ss_pred             CCccccc--------------------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC
Confidence            8775321                    1279999999999  67899999999999988775  5566      2   36


Q ss_pred             CCCeEEEEEeCCCCCEEEE
Q 017421          269 TSDVNTVCFGDESGHLIYS  287 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s  287 (372)
                      ...|.++.|. +++.++++
T Consensus       213 ~~~V~sI~wl-~~~~flv~  230 (388)
T 1xip_A          213 EYSPLSVTIL-SPQDFLAV  230 (388)
T ss_dssp             TSEEEEEEES-SSSEEEEE
T ss_pred             CeeEEEEEEe-cCCeEEEE
Confidence            7889999999 88888776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.33  E-value=2.4e-09  Score=93.29  Aligned_cols=181  Identities=9%  Similarity=0.066  Sum_probs=129.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      +...+.+++++++|+++++...++.|.+||.. +.... .. .......+.+++++++++.+++...++.|..||.. +.
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            45679999999999988877667899999988 53322 11 12233468999999999988877768899999986 33


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEEeCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES  281 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~  281 (372)
                      .... ...              .....+..++++|+|+++++...++.|.+||. +++... ....+...+..+++. ++
T Consensus        89 ~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~~  151 (299)
T 2z2n_A           89 IKEY-TLP--------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-SD  151 (299)
T ss_dssp             EEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TT
T ss_pred             EEEE-eCC--------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-CC
Confidence            2111 110              01236889999999998888777889999998 554332 223345678999998 88


Q ss_pred             CCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          282 GHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      |+++++...++.|..||...      .......+..++++++|++.++.
T Consensus       152 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          152 NALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEc
Confidence            98888776778999998731      11234467899999999866554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=1.9e-09  Score=97.67  Aligned_cols=212  Identities=13%  Similarity=0.019  Sum_probs=130.8

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeec-ccC---CcceEEEEECCCCCEEEEEeC--CCe
Q 017421          129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI  192 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~-~~~---~~~v~~~~~~~~~~~l~~~~~--dg~  192 (372)
                      .++++|||++++++.          .++.|.+||..+.+.+...... ...   ......+.|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998875          3678999999887655543322 110   123568999999999998874  578


Q ss_pred             EEEEECCCCceeee-cceeecccccceeccC---------C--------CCccccE--------------EEEEEcCCCC
Q 017421          193 VHIVDVGSGTMESL-ANVTEIHDGLDFSAAD---------D--------GGYSFGI--------------FSLKFSTDGR  240 (372)
Q Consensus       193 i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~---------~--------~~h~~~i--------------~~~~~sp~~~  240 (372)
                      |.++| .+++.... ......   ..+.+..         +        .+.....              ....+.+++.
T Consensus       150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCC
Confidence            99999 98886544 332110   0011100         0        0000000              0112334444


Q ss_pred             EEEEEeCCCeEEEEECCCCe--EEEEeec----------CCCCeEEEEEeCCCCCEEEEEeC----------CCeEEEEe
Q 017421          241 ELVAGSSDDCIYVYDLEANK--LSLRILA----------HTSDVNTVCFGDESGHLIYSGSD----------DNLCKVNS  298 (372)
Q Consensus       241 ~l~s~s~dg~i~iwd~~~~~--~~~~~~~----------~~~~v~~~~~sp~~~~~l~s~~~----------dg~i~vwd  298 (372)
                      .++..+..+.+.+.|+....  .+..+..          .......+.++ ++++.++++..          ++.|.++|
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s-~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL-KSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC-CCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence            33333456778888876542  2222211          11223447788 78887777643          35799999


Q ss_pred             ccccc-----CCCCCeeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          299 VLLLT-----RSINPCNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       299 ~~~~~-----~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +.+.+     .......+++|+|||+ .++++.     ..++.|.++|..+++.+...
T Consensus       305 ~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~-----~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          305 GLVGQTSSQISLGHDVDAISVAQDGGPDLYALS-----AGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc-----CCCCeEEEEECCCCCEEeee
Confidence            97543     2334589999999999 666663     12789999999999988773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.31  E-value=2.9e-09  Score=92.75  Aligned_cols=190  Identities=8%  Similarity=-0.041  Sum_probs=133.5

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ....+.+++++++|+++++...++.|..|+.... . .... .......+.++.+.++++++++...++.|.+||. ++.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~-~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-I-KEYT-LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E-EEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-E-EEEe-CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            4567999999999998888777888999998632 2 2211 2223346889999999988887777889999998 554


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCeEEEEEeCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDES  281 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~~  281 (372)
                      ...... .              .....+..++++++|+++++...++.|..||. +++.... .......+.+++++ ++
T Consensus       131 ~~~~~~-~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~  193 (299)
T 2z2n_A          131 IREYEL-P--------------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG-ND  193 (299)
T ss_dssp             EEEEEC-S--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TT
T ss_pred             EEEecC-C--------------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CC
Confidence            322111 0              11236889999999988887777789999999 6654332 33345578899998 88


Q ss_pred             CCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEE-eeeeEEEee
Q 017421          282 GHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIY-LILVISIYS  333 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~-~~~~~~~~d  333 (372)
                      |+++++...++.|.+||...      .......+.+++++++|++.++. ..+.+..+|
T Consensus       194 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          194 DALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             CCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            88777766788999999731      11234568899999999866654 233444444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.31  E-value=2.1e-09  Score=94.21  Aligned_cols=184  Identities=7%  Similarity=0.049  Sum_probs=121.9

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-cCCcceEEEEECCCCCEEEEEeCC---------C
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMS---------P  191 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------g  191 (372)
                      .....+.+++++++|+++++ . +..|.+||..++.......... .....+..+.++|+|+++++....         .
T Consensus        51 ~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           51 TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred             eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence            34678999999999995554 4 4679999998775432211111 122458899999999976654321         2


Q ss_pred             eEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEEEC--CCCeE-----E
Q 017421          192 IVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDL--EANKL-----S  262 (372)
Q Consensus       192 ~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iwd~--~~~~~-----~  262 (372)
                      ...+|.+.. +.......                 +....+.++|+|+++.|+ +.+.++.|.+||+  .++..     .
T Consensus       129 ~~~l~~~d~~g~~~~~~~-----------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          129 QGALYSLFPDHHVKKYFD-----------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             CEEEEEECTTSCEEEEEE-----------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             CcEEEEEECCCCEEEEee-----------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence            234554443 22211111                 112567899999998764 5556789999997  45532     2


Q ss_pred             EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEec-cCCCeEEEEe
Q 017421          263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFN-PCNKYLIIYL  325 (372)
Q Consensus       263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s-~~g~~l~~~~  325 (372)
                      ..+..+...+..++++ ++|++.++....+.|.+||..+.+      .....+++++|. |+++.|++++
T Consensus       192 ~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          192 YKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            2233344567899999 899888888788899999986322      344678999998 8988877664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.31  E-value=1.6e-09  Score=95.07  Aligned_cols=202  Identities=9%  Similarity=0.020  Sum_probs=129.9

Q ss_pred             CCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          124 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       124 ~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ..-..+..|+|++ .++++...++.|..||..++....  .   .....+.+++++++++++++ . ++.|.+||..+++
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~---~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--V---TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--E---ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--E---eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            3445688999965 455666678899999998774421  1   12346899999999995554 4 5689999998876


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---------CeEEEEECCC-CeEEEEeecCCCCe
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEA-NKLSLRILAHTSDV  272 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---------g~i~iwd~~~-~~~~~~~~~~~~~v  272 (372)
                      ..........            .....++.++++|+|+++++....         ....+|.+.. ++. ..+..+....
T Consensus        85 ~~~~~~~~~~------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~p  151 (297)
T 3g4e_A           85 AVVLATVDND------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDIS  151 (297)
T ss_dssp             EEEEEECCTT------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBE
T ss_pred             EEEEEecCCC------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccc
Confidence            5433221100            112368899999999977654322         2234444432 333 2233344567


Q ss_pred             EEEEEeCCCCCEEEE-EeCCCeEEEEecc--cc-----------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421          273 NTVCFGDESGHLIYS-GSDDNLCKVNSVL--LL-----------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s-~~~dg~i~vwd~~--~~-----------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                      ..++|+ |+++.|+. .+.++.|.+||+.  ..           ......+..++++++|++.++..      ..+.|..
T Consensus       152 ngi~~s-pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~------~~~~v~~  224 (297)
T 3g4e_A          152 NGLDWS-LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY------NGGRVIR  224 (297)
T ss_dssp             EEEEEC-TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE------TTTEEEE
T ss_pred             cceEEc-CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc------CCCEEEE
Confidence            899999 88886654 4567899999873  11           11234578899999997666552      1356778


Q ss_pred             eecccceEEEEEee
Q 017421          339 DNYFLLRTFYSFMV  352 (372)
Q Consensus       339 w~~~~~~~~~~~~~  352 (372)
                      ||..+++.+..+..
T Consensus       225 ~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          225 LDPVTGKRLQTVKL  238 (297)
T ss_dssp             ECTTTCCEEEEEEC
T ss_pred             EcCCCceEEEEEEC
Confidence            88777776655543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.29  E-value=2.1e-09  Score=102.48  Aligned_cols=239  Identities=12%  Similarity=0.043  Sum_probs=156.5

Q ss_pred             ccCCCCcc---ccCCceeEeeeee--CCCCCccccCCCCceEEEEEC----CCCCEEEEEeC-CCcEEEEeCCCCeEEEE
Q 017421           92 NYSGRGRF---SAADCCHMLSRYL--PVNGPWPVDQTTSRAYVSQFS----ADGSLFVAGFQ-ASQIRIYDVERGWKIQK  161 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~  161 (372)
                      .+++++++   .+.+..+.+++..  .......+.. ......++|+    |||++++++.. +++|.|+|..+.+.+..
T Consensus       203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~  281 (567)
T 1qks_A          203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  281 (567)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence            34555543   2223345555543  2222222322 3456889999    69998877654 58999999887755543


Q ss_pred             eeeccc-------------------C---------------------------------CcceEEEEECCCCCEEEEEe-
Q 017421          162 DILAKS-------------------L---------------------------------RWTVTDTSLSPDQRHLVYAS-  188 (372)
Q Consensus       162 ~~~~~~-------------------~---------------------------------~~~v~~~~~~~~~~~l~~~~-  188 (372)
                      ......                   +                                 ......+.|+|++++++++. 
T Consensus       282 i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          282 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             EeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC
Confidence            221100                   0                                 00123568999999987766 


Q ss_pred             CCCeEEEEECCCCceeeecce-eecccccceeccCCCCccc-cEEEEEEcCCCC-EEEEEe-CCCeEEEEECCC------
Q 017421          189 MSPIVHIVDVGSGTMESLANV-TEIHDGLDFSAADDGGYSF-GIFSLKFSTDGR-ELVAGS-SDDCIYVYDLEA------  258 (372)
Q Consensus       189 ~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~-~i~~~~~sp~~~-~l~s~s-~dg~i~iwd~~~------  258 (372)
                      .++.|.++|+.+++....... ...            .|.. .+. + ++|++. .++++. .++.|.++|..+      
T Consensus       362 ~sn~V~ViD~~t~kl~~~i~vgg~~------------Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~  427 (567)
T 1qks_A          362 ARNKLVVIDTKEGKLVAIEDTGGQT------------PHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN  427 (567)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSSS------------BCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             CCCeEEEEECCCCcEEEEEeccCcC------------CCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc
Confidence            478999999999876544332 111            1211 222 2 578754 445554 468999999987      


Q ss_pred             -CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-------CCeEEEEecccc-----cC---------------CCCCee
Q 017421          259 -NKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-------DNLCKVNSVLLL-----TR---------------SINPCN  310 (372)
Q Consensus       259 -~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-------dg~i~vwd~~~~-----~~---------------~~~~v~  310 (372)
                       .+.+.++......-..+..+ |+++++.+...       .++|.++|+.++     ..               ....+.
T Consensus       428 ~~kvv~~i~~~g~g~~~i~~~-p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  506 (567)
T 1qks_A          428 AWKILDSFPALGGGSLFIKTH-PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV  506 (567)
T ss_dssp             BTSEEEEEECSCSCCCCEECC-TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred             cCEEEEEEecCCCCCEEEEeC-CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence             67788887654444557788 99998888653       358999999876     10               134678


Q ss_pred             EEEeccCCCeEEEEeeeeEEEe-----eceEEEeecccceEEEEEee
Q 017421          311 KYLFNPCNKYLIIYLILVISIY-----SPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~-----d~~i~lw~~~~~~~~~~~~~  352 (372)
                      .+.|+|+|+.+.++.      |     ++.|.++|..+++.+.....
T Consensus       507 ~~~~~~~G~~~~~s~------~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          507 QGEFNKDGTEVWFSV------WNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEECTTSSEEEEEE------ECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             eeeECCCCCEEEEEe------ecCCCCCCcEEEEECCCceEEEEeCC
Confidence            999999999988764      5     68999999999998877653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.29  E-value=1.6e-09  Score=95.42  Aligned_cols=194  Identities=12%  Similarity=0.067  Sum_probs=128.9

Q ss_pred             CCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEE-eeecc-cCCcceEEEEECCCCCEEEEEeCC---------
Q 017421          123 TTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQK-DILAK-SLRWTVTDTSLSPDQRHLVYASMS---------  190 (372)
Q Consensus       123 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------  190 (372)
                      +...+.+++++++ ++++++.. ...|.+||.. +..... ..... .....+.+++++++++++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4567899999999 76555544 4479999988 543221 11111 112358899999999887776554         


Q ss_pred             ------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEc----CCCCEEEEE-eCCCeEEEEECC-C
Q 017421          191 ------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAG-SSDDCIYVYDLE-A  258 (372)
Q Consensus       191 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s----p~~~~l~s~-s~dg~i~iwd~~-~  258 (372)
                            +.|..|+.. ++......                 +......++|+    |+++.|+.+ ..++.|.+||+. +
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~-----------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~  208 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDT-----------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEE-----------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             cccCCCCeEEEECCC-CCEEEecc-----------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC
Confidence                  567777765 44322211                 11246789999    999765544 567899999986 4


Q ss_pred             Ce-----EEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEee
Q 017421          259 NK-----LSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       259 ~~-----~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      ++     ....+..+. ..+..++++ ++|+++++...++.|.+||..+..      .+...+.+++|+|+|+.|.++..
T Consensus       209 g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          209 AKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             TEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CccccceEEEECCCCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            44     222333333 567889999 899988888788999999986322      33467899999999997766632


Q ss_pred             eeEEEeeceEEEeecc
Q 017421          327 LVISIYSPNILLDNYF  342 (372)
Q Consensus       327 ~~~~~~d~~i~lw~~~  342 (372)
                      .     ++.|..|+..
T Consensus       288 ~-----~~~l~~~~~~  298 (314)
T 1pjx_A          288 E-----NNAVWKFEWQ  298 (314)
T ss_dssp             T-----TTEEEEEECS
T ss_pred             C-----CCeEEEEeCC
Confidence            1     3456666654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=9.6e-10  Score=100.92  Aligned_cols=207  Identities=7%  Similarity=-0.044  Sum_probs=134.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC--eEEEEECCCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG  201 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~  201 (372)
                      -.....++|+++++++++...++.|++||+.++..... ...   ..... ++|+|+++.|+++..++  .|.+++...+
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~-~~~---~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV-HPG---FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE-EET---CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe-ecc---CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            45788999999999888877789999999987744332 211   22244 99999999999888766  7889988765


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE----eecCCCCe-E-EE
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDV-N-TV  275 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~v-~-~~  275 (372)
                      ...........            .....+.+++++|++..|+.+..++.|..||..++.....    ..++...- . .+
T Consensus       205 ~~~~~~g~~~~------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i  272 (409)
T 3hrp_A          205 WAPTRIGQLGS------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL  272 (409)
T ss_dssp             TCEEEEEECCT------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred             ceeEEeeeccc------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence            43211100000            0123567899999555555577788999999987754322    12222222 3 99


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccc----ccCC---------------CCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLL----LTRS---------------INPCNKYLFNPCNKYLIIYLILVISIYSPNI  336 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~----~~~~---------------~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i  336 (372)
                      +|+|.++.++++-..++.|+.|+...    +.+.               -.....++++|+|+++++-..     .+.+|
T Consensus       273 a~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~-----~~~~I  347 (409)
T 3hrp_A          273 IYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF-----KGYCL  347 (409)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT-----TTCEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC-----CCCEE
Confidence            99933566667767788999998752    1111               234789999999985444310     14678


Q ss_pred             EEeecccceEEEEEeee
Q 017421          337 LLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       337 ~lw~~~~~~~~~~~~~h  353 (372)
                      +.|+..+++ +..+.++
T Consensus       348 ~~~~~~~G~-v~~~~g~  363 (409)
T 3hrp_A          348 RKLDILDGY-VSTVAGQ  363 (409)
T ss_dssp             EEEETTTTE-EEEEEEC
T ss_pred             EEEECCCCE-EEEEeCC
Confidence            888876665 3444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.26  E-value=9e-10  Score=96.96  Aligned_cols=193  Identities=13%  Similarity=0.005  Sum_probs=123.8

Q ss_pred             eCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc-CCcceEEEEECCCCCEEEE----
Q 017421          112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVY----  186 (372)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~----  186 (372)
                      .+......+..+...+.+++++++|+++++...++.|.+|+.. +..........+ ....+..+.++|+|+++++    
T Consensus        73 ~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~  151 (305)
T 3dr2_A           73 REDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPF  151 (305)
T ss_dssp             ETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSG
T ss_pred             eCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCC
Confidence            3333334445566779999999999977766666789999986 432211111111 1124678999999998876    


Q ss_pred             EeC-------------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----
Q 017421          187 ASM-------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----  248 (372)
Q Consensus       187 ~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----  248 (372)
                      |..             .+.|..||..+++.....   ..               ...+.++|+||++.|+.+...     
T Consensus       152 g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~---------------~~p~gl~~spdg~~lyv~~~~~~~~~  213 (305)
T 3dr2_A          152 GLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL---------------DHPNGLAFSPDEQTLYVSQTPEQGHG  213 (305)
T ss_dssp             GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE---------------SSEEEEEECTTSSEEEEEECCC---C
T ss_pred             CccccccccccccccCCCeEEEEcCCCCcEEEEe---cC---------------CCCcceEEcCCCCEEEEEecCCcCCC
Confidence            332             256778887666653322   10               146789999999988776654     


Q ss_pred             -CeEEEEECCCCeEE--EEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCC
Q 017421          249 -DCIYVYDLEANKLS--LRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNK  319 (372)
Q Consensus       249 -g~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~  319 (372)
                       +.|.+|++..+...  ..+ ......+..++++ ++|++.++. .+ .|.+|+...     +... ..+.+++|+|+++
T Consensus       214 ~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lwv~~-~~-gv~~~~~~g~~~~~~~~~-~~~~~~~f~~d~~  289 (305)
T 3dr2_A          214 SVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLWSSS-GT-GVCVFDSDGQLLGHIPTP-GTASNCTFDQAQQ  289 (305)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEEECC-SS-EEEEECTTSCEEEEEECS-SCCCEEEECTTSC
T ss_pred             CCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEEEec-CC-cEEEECCCCCEEEEEECC-CceeEEEEeCCCC
Confidence             68999998765411  111 1123445678898 899855444 44 499998751     1122 2588999999998


Q ss_pred             eEEEEeee
Q 017421          320 YLIIYLIL  327 (372)
Q Consensus       320 ~l~~~~~~  327 (372)
                      .|.+++..
T Consensus       290 ~L~it~~~  297 (305)
T 3dr2_A          290 RLFITGGP  297 (305)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEcCC
Confidence            88877533

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.26  E-value=1.2e-09  Score=96.18  Aligned_cols=205  Identities=15%  Similarity=0.107  Sum_probs=131.1

Q ss_pred             CCceEEEEECCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEeee-cccCCcceEEEEECCC-CCEEEEEeCCCeEE
Q 017421          124 TSRAYVSQFSADGSLFVA-------GFQASQIRIYDVERGWKIQKDIL-AKSLRWTVTDTSLSPD-QRHLVYASMSPIVH  194 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  194 (372)
                      -....+++|+++++++++       +..++.|.+|+..+++....... ..++...+.++.++++ ++++++ +..+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence            345788999999998887       56778999999877754321110 0113346889999999 665554 4445799


Q ss_pred             EEECCCCceeee-cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---------------CeEEEEECCC
Q 017421          195 IVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------DCIYVYDLEA  258 (372)
Q Consensus       195 vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---------------g~i~iwd~~~  258 (372)
                      +||.. ++.... .....   +         .....+..++++|+|+++++...+               +.|..||.. 
T Consensus        96 ~~d~~-g~~~~~~~~~~~---~---------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSE---G---------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             EEETT-SCEEECCSBCTT---S---------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             EEeCC-CCEEEEEeccCC---C---------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence            99998 664322 11100   0         112357899999999988877655               568888776 


Q ss_pred             CeEEEEeecCCCCeEEEEEe---CCCCCEE-EEEeCCCeEEEEecc-cc-----------cCCC-CCeeEEEeccCCCeE
Q 017421          259 NKLSLRILAHTSDVNTVCFG---DESGHLI-YSGSDDNLCKVNSVL-LL-----------TRSI-NPCNKYLFNPCNKYL  321 (372)
Q Consensus       259 ~~~~~~~~~~~~~v~~~~~s---p~~~~~l-~s~~~dg~i~vwd~~-~~-----------~~~~-~~v~~~~~s~~g~~l  321 (372)
                      ++.... ..+......++|+   .++++.| ++...++.|.+||+. ..           ..+. ..+..++++++|++.
T Consensus       162 g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          162 GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence            544332 2333456788887   1455454 444567899999965 11           1122 457889999999877


Q ss_pred             EEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          322 IIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      ++..      .++.|.+||..+++.+..+
T Consensus       241 v~~~------~~~~i~~~d~~~g~~~~~~  263 (314)
T 1pjx_A          241 VANW------GSSHIEVFGPDGGQPKMRI  263 (314)
T ss_dssp             EEEE------TTTEEEEECTTCBSCSEEE
T ss_pred             EEEc------CCCEEEEEcCCCCcEeEEE
Confidence            7652      2456777777656554444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=5.6e-09  Score=92.82  Aligned_cols=181  Identities=12%  Similarity=0.017  Sum_probs=119.7

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-cCCcceEEEEECCCCCEEEEEeC------CCeEEE
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM------SPIVHI  195 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~------dg~i~v  195 (372)
                      ....+.+++|+++|+++++. .+ .|.+||..++.......... .....+..+.++|+|+++++...      .+.|..
T Consensus        88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            35679999999999877754 44 49999988775432111111 11235889999999997765432      245666


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCeEEEEECC--CC-e-----EEEEee
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLE--AN-K-----LSLRIL  266 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~i~iwd~~--~~-~-----~~~~~~  266 (372)
                      ++  +++......                 +....+.++|+|+++.++.+ +.++.|.+||+.  ++ .     ....+.
T Consensus       166 ~~--~g~~~~~~~-----------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~  226 (326)
T 2ghs_A          166 VA--KGKVTKLFA-----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST  226 (326)
T ss_dssp             EE--TTEEEEEEE-----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred             Ee--CCcEEEeeC-----------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC
Confidence            66  444322111                 11246789999999877544 457899999986  55 3     222233


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEec-cCCCeEEEEe
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFN-PCNKYLIIYL  325 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s-~~g~~l~~~~  325 (372)
                      .....+..+++. ++|++.++...++.|.+||..     .+......+++++|+ |+++.|++++
T Consensus       227 ~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          227 GIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             TSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            334567889998 889888777677899999974     122344568999998 8988776653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.24  E-value=1.1e-09  Score=107.59  Aligned_cols=198  Identities=15%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             CCCCceEEEEECCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----
Q 017421          122 QTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----  191 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----  191 (372)
                      ++...+..++|||||++||.+.     ....|++||+.+++.+....  ..  .....++|+ |++.|+.++.+.     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KD--VKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence            3556789999999999988542     22579999999987554311  11  113578999 999999988774     


Q ss_pred             --------eEEEEECCCCceeeecceeecccccceeccCCCC-ccccEEEEEEcCCCCEEEEEeC----CCeEEEEECCC
Q 017421          192 --------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEA  258 (372)
Q Consensus       192 --------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~s~s~----dg~i~iwd~~~  258 (372)
                              .|++|++.++...........            . |...+..+.|+|||++|+....    ...|+++|+.+
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAI------------PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCS------------GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecC------------CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence                    399999987653211111100            1 2234678999999998865432    24899999987


Q ss_pred             Ce-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEecccc--------cCCCCCeeEEEeccCCCeEEEEee
Q 017421          259 NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLL--------TRSINPCNKYLFNPCNKYLIIYLI  326 (372)
Q Consensus       259 ~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~--------~~~~~~v~~~~~s~~g~~l~~~~~  326 (372)
                      +. ....+..+....... |++..+.++++...+   +.|..+|+...        ..+...+.  .|+++++.|+....
T Consensus       269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence            63 445566666666555 552344444555443   57888988632        23444444  89999998876631


Q ss_pred             eeEEEee--ceEEEeecccc
Q 017421          327 LVISIYS--PNILLDNYFLL  344 (372)
Q Consensus       327 ~~~~~~d--~~i~lw~~~~~  344 (372)
                           -+  ..|++|+...+
T Consensus       346 -----~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          346 -----VDATARVEQFDYEGK  360 (693)
T ss_dssp             -----ETTEEEEEEECTTSC
T ss_pred             -----ECCeeEEEEEECCCC
Confidence                 12  25777777643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.23  E-value=1.5e-08  Score=88.27  Aligned_cols=180  Identities=12%  Similarity=0.035  Sum_probs=129.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...+.+++++++|+++++...++.|.+|+.. +.... . ........+.++++.++++.+++...++.|..||.. ++.
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-F-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-E-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            4678999999999988877778999999988 53332 1 122233468999999999987777668899999987 554


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEEeCCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~  282 (372)
                      ... ...              .....+..+++.++|+++++...++.|..||.. ++... .+......+.++++. +++
T Consensus        95 ~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~g  157 (300)
T 2qc5_A           95 TEY-PLP--------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SDN  157 (300)
T ss_dssp             EEE-ECS--------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TTS
T ss_pred             EEe-cCC--------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CCC
Confidence            211 110              011368899999999988887778899999988 55432 233345678999998 889


Q ss_pred             CEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          283 HLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +++++...++.|..||...      .......+..++++++|++.++.
T Consensus       158 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          158 ALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEc
Confidence            8777666678899998741      11233567899999999766655

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.23  E-value=2.3e-09  Score=94.28  Aligned_cols=188  Identities=9%  Similarity=0.003  Sum_probs=124.4

Q ss_pred             CCccccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEE
Q 017421          116 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  194 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  194 (372)
                      ....+........+..|+|+++ +++++..++.|..|+.. +.. ...   ......+..+.++++|+++++...++.|.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~---~~~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVL---LDATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEE---EESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEE---eCCCCccceeeECCCCCEEEEECCCCEEE
Confidence            3444455556778899999998 55677778899999984 432 221   12334588999999999777666668899


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE----EeC-------------CCeEEEEECC
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GSS-------------DDCIYVYDLE  257 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s----~s~-------------dg~i~iwd~~  257 (372)
                      +|+.. ++.........   +         .....++.++++|+|+++++    |..             .+.|..||..
T Consensus       111 ~~~~~-g~~~~~~~~~~---~---------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYA---G---------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             EECTT-SCEEEEECEET---T---------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             EECCC-CCEEEEEeccC---C---------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            99986 55332221110   0         01125678999999998886    332             2568888887


Q ss_pred             CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEeccccc---------CCCCCeeEEEeccCCCeEE
Q 017421          258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVNSVLLLT---------RSINPCNKYLFNPCNKYLI  322 (372)
Q Consensus       258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d------g~i~vwd~~~~~---------~~~~~v~~~~~s~~g~~l~  322 (372)
                      +++.....  .......++|+ ++++.|+.+...      +.|.+|++....         .....+..++++++|++.+
T Consensus       178 ~g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          178 GSPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             SCCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred             CCcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence            66643332  33567889999 999988777665      689999975211         1123456789999998554


Q ss_pred             EE
Q 017421          323 IY  324 (372)
Q Consensus       323 ~~  324 (372)
                      +.
T Consensus       255 ~~  256 (305)
T 3dr2_A          255 SS  256 (305)
T ss_dssp             CC
T ss_pred             ec
Confidence            43

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.21  E-value=1.9e-08  Score=87.60  Aligned_cols=181  Identities=8%  Similarity=-0.028  Sum_probs=128.2

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ....+.+++++++++++++...++.|.+||.. +... .. ........+.++++.++++++++...++.|..+|.. ++
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY-PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee-cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence            34678999999999988877667889999987 5332 21 122223468999999999988877768899999987 55


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEEeCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES  281 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~  281 (372)
                      ..... ..              .....+..+++.++++++++...++.|..||. +++... ....+...+..++++ ++
T Consensus       136 ~~~~~-~~--------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-~~  198 (300)
T 2qc5_A          136 IYEYD-LP--------------NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG-ND  198 (300)
T ss_dssp             EEEEE-CS--------------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TT
T ss_pred             EEEcc-CC--------------CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC-CC
Confidence            43211 10              01236889999999997777666789999998 554432 222344578899998 78


Q ss_pred             CCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          282 GHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      |+++++....+.|.+||...      .......+.+++++++|++.++.
T Consensus       199 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          199 GALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence            88777776678899998741      11234567899999999865554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.21  E-value=2.2e-09  Score=106.35  Aligned_cols=195  Identities=14%  Similarity=0.110  Sum_probs=125.2

Q ss_pred             EEEEECCCCCEEEEEeCCCc--------------EEEEeCCCCeEEEEe-eecccCCcceEEEEECCCCCEEEEEeCCC-
Q 017421          128 YVSQFSADGSLFVAGFQASQ--------------IRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSP-  191 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg~--------------i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  191 (372)
                      ..++|+|| +.|+.++.++.              |++|++.++...... .....+...+..+.|+|||++|+..+.++ 
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            57899999 99988876654              889998776421111 11223333478999999999998877543 


Q ss_pred             ----eEEEEECCCC--c-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCC-
Q 017421          192 ----IVHIVDVGSG--T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEAN-  259 (372)
Q Consensus       192 ----~i~vwd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~-  259 (372)
                          .|++||+.++  . ...+..                 +...+... ++|+|+.|+..+.+    +.|.+||+.++ 
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~-----------------~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~  352 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIP-----------------DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST  352 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEEC-----------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred             CCcceEEEEECCCCCCcccEEecC-----------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence                8999999876  3 222211                 11123333 34889888877753    45999999874 


Q ss_pred             -eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccC-CCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          260 -KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTR-SINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       260 -~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                       +....+..+...+..+.|+  ++.++++...|+..+||.+.       .+.. ....+..+.++|+++.++......  
T Consensus       353 ~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~--  428 (741)
T 1yr2_A          353 PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF--  428 (741)
T ss_dssp             CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET--
T ss_pred             cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC--
Confidence             3434444455556677886  56788888889987777554       1111 345678899999998776442110  


Q ss_pred             EeeceEEEeecccce
Q 017421          331 IYSPNILLDNYFLLR  345 (372)
Q Consensus       331 ~~d~~i~lw~~~~~~  345 (372)
                      .-.+++.+||+.+++
T Consensus       429 ~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          429 TQPATVLALDPATAK  443 (741)
T ss_dssp             TEEEEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCc
Confidence            013566666666554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=2.2e-08  Score=88.99  Aligned_cols=195  Identities=11%  Similarity=0.047  Sum_probs=124.8

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          126 RAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       126 ~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      -..+..|+|++. ++++...++.|.+|+..++.... . .   ....+.++.|+|+++++++. . ..|.+||..+++..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~---~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-A---LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLT  122 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-E---CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-E---CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEE
Confidence            356789999754 55666678899999998874322 1 1   12368999999999877754 4 45999999888754


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      ........            .....++.++++|+|+++++...      .+.|..++  +++.. .+..+......++|+
T Consensus       123 ~~~~~~~~------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s  187 (326)
T 2ghs_A          123 LHAELESD------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS  187 (326)
T ss_dssp             EEECSSTT------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC
T ss_pred             EEeeCCCC------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc
Confidence            33211000            11236889999999997765542      24566666  45543 233333457789999


Q ss_pred             CCCCCEEEEE-eCCCeEEEEecc--cc-c-----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          279 DESGHLIYSG-SDDNLCKVNSVL--LL-T-----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       279 p~~~~~l~s~-~~dg~i~vwd~~--~~-~-----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                       ++++.|+.+ +.++.|.+||+.  .. .           .....+..++++++|.+.++...      ++.|..|+. +
T Consensus       188 -~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~------~~~v~~~d~-~  259 (326)
T 2ghs_A          188 -PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDT-D  259 (326)
T ss_dssp             -TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEECT-T
T ss_pred             -CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC------CCEEEEECC-C
Confidence             899876555 457899999975  22 1           11234577899999976665521      245666665 4


Q ss_pred             ceEEEEE
Q 017421          344 LRTFYSF  350 (372)
Q Consensus       344 ~~~~~~~  350 (372)
                      ++.+..+
T Consensus       260 g~~~~~i  266 (326)
T 2ghs_A          260 GNHIARY  266 (326)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEE
Confidence            4444433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.16  E-value=7.8e-09  Score=92.57  Aligned_cols=203  Identities=10%  Similarity=-0.023  Sum_probs=129.2

Q ss_pred             CceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEee----ecccCCcceEEEEECCCCCEEEEEeC-----CCeE
Q 017421          125 SRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASM-----SPIV  193 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i  193 (372)
                      ..+..++++|+|+.+++...  ++.+.||.+.++.. ....    ....+-..+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            57899999999999888642  34245555444532 2110    11123356899999999887666543     5789


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEe---CCCeEEEEECCCCeEEEEeecCC
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS---SDDCIYVYDLEANKLSLRILAHT  269 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s---~dg~i~iwd~~~~~~~~~~~~~~  269 (372)
                      .+||+.+++...........          ..+...+..++++|++..+ ++..   .++.|.+||+.+++....+..|.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~  165 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPI----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP  165 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTT----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred             EEEECCCCeEEEEEECChhh----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence            99999988754333221110          0122356889999865444 5554   57899999999887665553321


Q ss_pred             -----------------------------CCeEEEEEeCCCCCEEEEEeCCC-eEEEEeccccc----------------
Q 017421          270 -----------------------------SDVNTVCFGDESGHLIYSGSDDN-LCKVNSVLLLT----------------  303 (372)
Q Consensus       270 -----------------------------~~v~~~~~sp~~~~~l~s~~~dg-~i~vwd~~~~~----------------  303 (372)
                                                   ..+..++|+ ++++.|+++..++ .|..++...+.                
T Consensus       166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s-~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  244 (343)
T 2qe8_A          166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD-AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY  244 (343)
T ss_dssp             TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEEC-TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred             cccccccceeECCEEEEeccCCCceeceecccceeEec-cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence                                         235789999 8999888887665 55555533111                


Q ss_pred             CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          304 RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       304 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      ++......++++++|.+.++..      .++.|.+||..+++
T Consensus       245 g~~g~pdgia~d~~G~l~va~~------~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          245 SEKPICDGISIDKDHNIYVGDL------AHSAIGVITSADRA  280 (343)
T ss_dssp             EECCSCSCEEECTTCCEEEEEG------GGTEEEEEETTTTE
T ss_pred             ccCCCCceEEECCCCCEEEEcc------CCCeEEEEECCCCC
Confidence            1233567899999998776653      24567777764443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.14  E-value=1.1e-08  Score=93.94  Aligned_cols=182  Identities=9%  Similarity=0.064  Sum_probs=119.1

Q ss_pred             EEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEeeec-ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          130 SQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                      ++|+|+++.|+++..++  .|.+|+...+......-.. ......+.+++++|++..|+++..++.|+.||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999998888766  7888988765432222111 11334578899999655666677788999999987753222


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCC---------------C
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHT---------------S  270 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------~  270 (372)
                      .....  .+     .   ....+...++|+|+ +.++++-..++.|+.|+....  ...+.++.               .
T Consensus       256 ~~~~~--~g-----~---~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~  323 (409)
T 3hrp_A          256 KQLEL--SG-----S---LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFA  323 (409)
T ss_dssp             EECCC--CS-----C---CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCS
T ss_pred             ecccc--cC-----C---CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeC
Confidence            11000  00     0   00011238999995 566666667889999998644  23333332               3


Q ss_pred             CeEEEEEeCCCCCEEEEEe-CCCeEEEEeccc-----ccCC---------------CCCeeEEEeccCCCeEEEE
Q 017421          271 DVNTVCFGDESGHLIYSGS-DDNLCKVNSVLL-----LTRS---------------INPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~-----~~~~---------------~~~v~~~~~s~~g~~l~~~  324 (372)
                      ....++++ ++|+++++-. .++.|+.|++..     +.++               -.....++++++|.++++-
T Consensus       324 ~P~gia~d-~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad  397 (409)
T 3hrp_A          324 QPNGMTVD-EDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE  397 (409)
T ss_dssp             SEEEEEEC-TTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred             CCeEEEEe-CCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence            57899999 8999777777 789999999541     1111               2457889999997665554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.12  E-value=3.8e-09  Score=96.58  Aligned_cols=216  Identities=16%  Similarity=0.127  Sum_probs=138.8

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeec-ccC---CcceEEEEECCCCCEEEEEeC--CCe
Q 017421          129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI  192 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~-~~~---~~~v~~~~~~~~~~~l~~~~~--dg~  192 (372)
                      .++++|||++++++.          .++.|.++|..+.+.+...... ...   ......+.|+||+++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999887775          3678999999998776654432 110   123567899999999999874  578


Q ss_pred             EEEEECCCCceeeecceeec----ccc----cceeccC-------CCCccc------------c-EEEEEEcCCCCEEEE
Q 017421          193 VHIVDVGSGTMESLANVTEI----HDG----LDFSAAD-------DGGYSF------------G-IFSLKFSTDGRELVA  244 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~----~~~----~~~~~~~-------~~~h~~------------~-i~~~~~sp~~~~l~s  244 (372)
                      |.+.|+.+++..........    ..+    +.+.++.       ..++-.            + ...+.|.+++..++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999887554433110    000    0111110       000000            0 012345777777766


Q ss_pred             EeCCCeEEEEECCCCeEE--EEeec----------CCCCeEEEEEeCCCCCEEEEEeC----------CCeEEEEecccc
Q 017421          245 GSSDDCIYVYDLEANKLS--LRILA----------HTSDVNTVCFGDESGHLIYSGSD----------DNLCKVNSVLLL  302 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~--~~~~~----------~~~~v~~~~~sp~~~~~l~s~~~----------dg~i~vwd~~~~  302 (372)
                      .+..+.|.+.|+......  ..+.-          .......++++ ++++.+++...          ++.|.++|+.+.
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s-~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~  360 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH-RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG  360 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE-GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc-CCCCEEEEEecccccccccCCCCEEEEEECCCC
Confidence            677788888888654321  11110          01122236889 78777666542          357999999865


Q ss_pred             c-----CCCCCeeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          303 T-----RSINPCNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       303 ~-----~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      +     ........+.|+|||+ +++++.     ..++.|.++|..+++.+...
T Consensus       361 kvv~~I~vg~~P~gia~spDg~~~lyv~n-----~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          361 ERINKIELGHEIDSINVSQDAEPLLYALS-----AGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CEEEEEEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEEECCCCcCeEEEccCCCEEEEEEc-----CCCCeEEEEECCCCCEEEEe
Confidence            4     1223578999999999 777774     12799999999999999886

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.07  E-value=5.3e-11  Score=107.87  Aligned_cols=186  Identities=9%  Similarity=-0.079  Sum_probs=97.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      ++..+++++.||.|+.||..+++.+.....     ..+.+..+..++..+++++.||.|+.||..+++........... 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-
Confidence            577899999999999999999977765433     23444455567778888889999999999888764333211000 


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeE
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC  294 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i  294 (372)
                      . .        ...++    +. ++..+++++.++.|..||.++|+.+..+..+.    ...++ |++..+++++.|+.|
T Consensus        82 ~-~--------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~-p~~~~v~~~~~dg~v  142 (369)
T 2hz6_A           82 L-V--------QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLS-PSTSLLYLGRTEYTI  142 (369)
T ss_dssp             H-H--------TTCSC----C------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEE
T ss_pred             c-c--------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----ccccc-ccCCEEEEEecCCEE
Confidence            0 0        00011    11 34467778889999999999999887776543    24556 578889999999999


Q ss_pred             EEEecccccCCC----CCeeEEEeccCC---CeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          295 KVNSVLLLTRSI----NPCNKYLFNPCN---KYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       295 ~vwd~~~~~~~~----~~v~~~~~s~~g---~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      +.||.++.+..-    .......++++.   ..+++++      .|+.+..||..+|+.+..+.
T Consensus       143 ~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~------~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          143 TMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSN------GDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             ECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEE------TSCEEEEECTTTCCEEEEEE
T ss_pred             EEEECCCCCEEEeEecccccCccccCCccccceEEEEC------CCCEEEEEECCCCcEEEEec
Confidence            999987543110    011223333331   3344332      46778888888888777654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=2.3e-08  Score=89.50  Aligned_cols=203  Identities=8%  Similarity=0.066  Sum_probs=127.4

Q ss_pred             CCCCceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeeecc---cCCcceEEEEECCCCCEE-EEEe---C
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAK---SLRWTVTDTSLSPDQRHL-VYAS---M  189 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l-~~~~---~  189 (372)
                      .+...+.+++++++++++++-..     +..|.+||+.+++.+.......   .+...+..+++++++..+ ++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            46678999999999987776543     5789999999886554432211   122346889999865555 4444   5


Q ss_pred             CCeEEEEECCCCceeeecce--eecccccceeccC-------CCC----ccccEEEEEEcCCCCEEEEEeCCC-eEEEEE
Q 017421          190 SPIVHIVDVGSGTMESLANV--TEIHDGLDFSAAD-------DGG----YSFGIFSLKFSTDGRELVAGSSDD-CIYVYD  255 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~----h~~~i~~~~~sp~~~~l~s~s~dg-~i~iwd  255 (372)
                      ++.|.+||+.+++.......  ........+....       ..+    ....++.|+|+|+|+.|+.+...+ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            78999999988775443211  0000001111110       000    012468899999999888877665 555555


Q ss_pred             CC---CCe-----EE--EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec-c-cc---c--CCCCCeeEEEeccCC
Q 017421          256 LE---ANK-----LS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV-L-LL---T--RSINPCNKYLFNPCN  318 (372)
Q Consensus       256 ~~---~~~-----~~--~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~-~-~~---~--~~~~~v~~~~~s~~g  318 (372)
                      ..   .+.     ..  ....++......++++ ++|+++++...++.|.+||. . .+   .  .....+.+++|.++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d-~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISID-KDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEEC-TTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEEC-CCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence            32   110     00  0112344456789999 88999998888999999998 3 11   1  124467899999998


Q ss_pred             CeEEEEe
Q 017421          319 KYLIIYL  325 (372)
Q Consensus       319 ~~l~~~~  325 (372)
                      +++++..
T Consensus       303 ~l~v~~~  309 (343)
T 2qe8_A          303 YLYFDCN  309 (343)
T ss_dssp             CEEEEEC
T ss_pred             cEEEEeC
Confidence            8776663

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.01  E-value=7.3e-08  Score=86.61  Aligned_cols=152  Identities=13%  Similarity=0.004  Sum_probs=103.5

Q ss_pred             EECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe----------CCCeEEE
Q 017421          131 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHI  195 (372)
Q Consensus       131 ~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~v  195 (372)
                      ...|+++.+.+...     ++.|.++|..+.+.+........   + . +.++||+++++++.          .++.|.+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            34688888877755     57999999999877665433222   3 4 99999999988775          3578999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCeE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVN  273 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~  273 (372)
                      ||..+.+.............         ........+.|+|||++++++..  ++.|.++|+.+++.+.++....  + 
T Consensus       114 iD~~t~~v~~~I~v~~g~r~---------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-  181 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-  181 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-
T ss_pred             EECCCCeEEEEEECCCcccc---------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-
Confidence            99999887554432210000         00113456899999999887764  6899999999999988886422  1 


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          274 TVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      ...+ |...+.+++.+.||++.+.++.
T Consensus       182 ~~~~-P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          182 YHIF-PTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             EEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred             ceee-cCCCceeEEECCCCCEEEEECC
Confidence            1222 3445566666677777776664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.00  E-value=1.5e-07  Score=84.65  Aligned_cols=204  Identities=11%  Similarity=0.103  Sum_probs=129.6

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeecccC----CcceEEEEECCCCCEEEEEeC--CCe
Q 017421          129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPI  192 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~  192 (372)
                      .++++|||+++.++.          .++.|.+||..+.+.+.......+.    ......+.|+|||++++++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887765          3578999999998776664432211    124667999999999998864  689


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecC---
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAH---  268 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~---  268 (372)
                      |.++|+.+++.........                  . ...+....+.+++.+.||.+.+.++.+ ++.......+   
T Consensus       162 VsVID~~t~~vv~tI~v~g------------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~  222 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD------------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP  222 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS------------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred             EEEEECCCCcEEEEEECCC------------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc
Confidence            9999999998755443211                  1 112222345666777788888888765 4443222111   


Q ss_pred             -CCCeE-EEEEeCCCCCEEEEEeCCCeEEEEeccccc-----C-------------CCCCeeEEEeccCCCeEEEEeeee
Q 017421          269 -TSDVN-TVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----R-------------SINPCNKYLFNPCNKYLIIYLILV  328 (372)
Q Consensus       269 -~~~v~-~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~-------------~~~~v~~~~~s~~g~~l~~~~~~~  328 (372)
                       ..++. ...|.+++|++++ .+.+|.|.+.|+....     .             .......++++|+++.+++.....
T Consensus       223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~  301 (386)
T 3sjl_D          223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR  301 (386)
T ss_dssp             TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence             12222 2466557786655 5568999999985221     0             012334578899999888874210


Q ss_pred             EE----EeeceEEEeecccceEEEEEee
Q 017421          329 IS----IYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       329 ~~----~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      -.    --.++|.+.|..+++.++.+..
T Consensus       302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v  329 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGERLAKFEM  329 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEEC
Confidence            00    0024677889999988887644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.97  E-value=3.8e-07  Score=82.44  Aligned_cols=120  Identities=11%  Similarity=-0.019  Sum_probs=80.5

Q ss_pred             ECCCCCEEEEEeC--CC---cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe----------CCCeEEEE
Q 017421          132 FSADGSLFVAGFQ--AS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIV  196 (372)
Q Consensus       132 ~s~~~~~l~~~~~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw  196 (372)
                      ..|+++++.+...  ..   .|.+||..+++.+.....  + . .. .+.++||+++++++.          .++.|.+|
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g-~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G-F-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C-C-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence            3467776665543  22   789999998876544221  2 2 23 899999999999886          36789999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEE-ee
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-IL  266 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~  266 (372)
                      |..+.+............   +      .+......+.|+|||++|+++..  ++.|.++| .+++.+.. +.
T Consensus       103 D~~t~~~~~~i~~~~~~~---~------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          103 DPVTFLPIADIELPDAPR---F------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             ECCCCcEEEEEECCCccc---c------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence            998877644333210000   0      00013457899999999998774  47899999 99988777 54

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.96  E-value=6.8e-08  Score=94.86  Aligned_cols=194  Identities=8%  Similarity=-0.014  Sum_probs=119.3

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------cEEEEeCCCCeEEEEee-eccc-CCcceEEEEECCCCCEEEEEeC---
Q 017421          128 YVSQFSADGSLFVAGFQAS-------------QIRIYDVERGWKIQKDI-LAKS-LRWTVTDTSLSPDQRHLVYASM---  189 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg-------------~i~vwd~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~---  189 (372)
                      ..++|+ |++.|+.++.+.             .|++|++.++....... .... +...+.++.|+||+++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            567899 999999888774             39999988764211111 1222 3344678999999998865443   


Q ss_pred             -CCeEEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C---CeEEEEECCCCeE-
Q 017421          190 -SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D---DCIYVYDLEANKL-  261 (372)
Q Consensus       190 -dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d---g~i~iwd~~~~~~-  261 (372)
                       ...|+++|+.++.  ...+..                 +....... |+++|..|+..+. +   +.|.++|+.++.. 
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~-----------------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~  318 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQG-----------------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA  318 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEEC-----------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             CCcEEEEEECCCCCCceEEEeC-----------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence             3589999998763  222111                 11123333 5666666654443 3   6799999987654 


Q ss_pred             -EEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          262 -SLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       262 -~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                       ...+..|...+.  .|+ ++++.|+.... ++  .|++||+....      .....+..+.++|++..++.......  
T Consensus       319 ~~~~l~~~~~~~~--~~s-~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~--  393 (693)
T 3iuj_A          319 HWRDLIPERQQVL--TVH-SGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYA--  393 (693)
T ss_dssp             GCEEEECCCSSCE--EEE-EETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSS--
T ss_pred             ccEEEecCCCCEE--EEE-EECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCC--
Confidence             245555666665  888 77777766654 44  68888875211      23345677788888887765521100  


Q ss_pred             eeceEEEeecccce
Q 017421          332 YSPNILLDNYFLLR  345 (372)
Q Consensus       332 ~d~~i~lw~~~~~~  345 (372)
                      -.+++..||+.+++
T Consensus       394 tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          394 QPPTLYRFEPKSGA  407 (693)
T ss_dssp             SCCEEEEECTTTCC
T ss_pred             CCCEEEEEECCCCe
Confidence            11455666655443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.94  E-value=1.1e-07  Score=86.24  Aligned_cols=189  Identities=13%  Similarity=0.006  Sum_probs=125.1

Q ss_pred             CCCCEEEE-EeCCCcEEEEeCCCC---eEEEEeee----c-ccCCcceEEEEECCCCCEEEEEeCC------CeEEEEEC
Q 017421          134 ADGSLFVA-GFQASQIRIYDVERG---WKIQKDIL----A-KSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDV  198 (372)
Q Consensus       134 ~~~~~l~~-~~~dg~i~vwd~~~~---~~~~~~~~----~-~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~  198 (372)
                      +++++|++ +..++.|.|+|+.+.   ..+.+.+.    . +........+...|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            78887755 566789999998754   12222221    0 1111246778889999 66665554      78999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-------------------CCCeEEEEECCCC
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------SDDCIYVYDLEAN  259 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-------------------~dg~i~iwd~~~~  259 (372)
                      ++.+.+..........             .-...+.|+|+++.+++..                   .+.+|.+||+.++
T Consensus       172 ~T~~v~~~~~~~~~~~-------------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQ-------------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             TTCCEEEECCSBCTTC-------------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CCCeEEEEEccCCCCc-------------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            9998766554322111             1234678899999888874                   3688999999999


Q ss_pred             eEEEEeecC-C-CCeEEEEE--eCCCCCEEEEEe------CCCeEEEEec-------------cccc--C----------
Q 017421          260 KLSLRILAH-T-SDVNTVCF--GDESGHLIYSGS------DDNLCKVNSV-------------LLLT--R----------  304 (372)
Q Consensus       260 ~~~~~~~~~-~-~~v~~~~~--sp~~~~~l~s~~------~dg~i~vwd~-------------~~~~--~----------  304 (372)
                      +.+.++... . .....+.|  + |+++++++++      .+++|.+|..             .+..  .          
T Consensus       239 k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~  317 (462)
T 2ece_A          239 KRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK  317 (462)
T ss_dssp             EEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred             cEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence            888887742 1 23455656  8 8898888776      4567765432             2211  0          


Q ss_pred             -CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          305 -SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       305 -~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                       ....+..+.++|||++|.++..     -.+.|.++|+.
T Consensus       318 ~~~~~pa~I~lS~DGrfLYVSnr-----g~d~VavfdV~  351 (462)
T 2ece_A          318 AVPPLVTDIDISLDDKFLYLSLW-----GIGEVRQYDIS  351 (462)
T ss_dssp             EECCCCCCEEECTTSCEEEEEET-----TTTEEEEEECS
T ss_pred             cCCCceeEEEECCCCCEEEEEeC-----CCCEEEEEEec
Confidence             0245788999999999998842     14667777764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.90  E-value=3.2e-07  Score=83.27  Aligned_cols=184  Identities=10%  Similarity=0.012  Sum_probs=122.2

Q ss_pred             ceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-----------
Q 017421          126 RAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-----------  188 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------  188 (372)
                      ....+...|+| .++++..+      |.|.++|..+.+.+...........--..+.|+|+++.++++.           
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            45567889999 66665444      6899999998876665432222222234588899999888874           


Q ss_pred             --------CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE--cCCCCEEEEEe------CCCeEE
Q 017421          189 --------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS------SDDCIY  252 (372)
Q Consensus       189 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~s~s------~dg~i~  252 (372)
                              ....|.+||+.+++.........              .......+.|  +|+++++.++.      .+++|.
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~--------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~  283 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE--------------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW  283 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTTTEEEEEEESCT--------------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE
T ss_pred             chhhhhhccCCEEEEEECCCCcEeeEEecCC--------------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEE
Confidence                    36899999999876544333210              0113445655  99999887766      456788


Q ss_pred             EEECCCCe--EEEEe--ecC----------------CCCeEEEEEeCCCCCEEEEEeC-CCeEEEEeccc---cc-----
Q 017421          253 VYDLEANK--LSLRI--LAH----------------TSDVNTVCFGDESGHLIYSGSD-DNLCKVNSVLL---LT-----  303 (372)
Q Consensus       253 iwd~~~~~--~~~~~--~~~----------------~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~~---~~-----  303 (372)
                      +|..+.++  ....+  ...                ...+..+.++ +||++|+++.. .+.|.+||+..   .+     
T Consensus       284 v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS-~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I  362 (462)
T 2ece_A          284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS-LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV  362 (462)
T ss_dssp             EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC-TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence            77665443  11211  110                2456789999 99999888774 68999999841   11     


Q ss_pred             --C-C------------CCCeeEEEeccCCCeEEEEe
Q 017421          304 --R-S------------INPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       304 --~-~------------~~~v~~~~~s~~g~~l~~~~  325 (372)
                        + .            ......++++|||++|+++.
T Consensus       363 ~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          363 KLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence              1 0            01368899999999999884

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=5.8e-07  Score=76.54  Aligned_cols=176  Identities=15%  Similarity=0.071  Sum_probs=117.8

Q ss_pred             ceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCc
Q 017421          126 RAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT  202 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~  202 (372)
                      ...++.|++++.++++.+.  ++.|.++|+.+++.+..... ..+. ....+++.  ++.|..+ -.++.+.++|..+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence            3689999998765555543  57999999999977665432 2221 12345554  4455544 458899999999887


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-----CCeEEEEE
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF  277 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~  277 (372)
                      ........ ...                 ...+++||+.++++..++.|.++|..+.+.+..+.-..     ..++.+.|
T Consensus        98 v~~~i~~g-~~~-----------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           98 NIKNFTHQ-MKD-----------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             EEEEEECC-SSS-----------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEEEECC-CCC-----------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            65543321 011                 12345678777777778899999999988877776321     24678888


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeccccc--------C-----------CCCCeeEEEeccCCCeEEEEe
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLLLT--------R-----------SINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~~~--------~-----------~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .  +|.+++....++.|.+.|+.+.+        +           .......++|+|+++.++++.
T Consensus       160 ~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          160 I--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             E--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             E--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            7  56655555567899999987433        0           012458999999998777663

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.87  E-value=6.8e-08  Score=86.79  Aligned_cols=211  Identities=10%  Similarity=-0.044  Sum_probs=129.1

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeecccC----CcceEEEEECCCCCEEEEEeC--CCe
Q 017421          129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPI  192 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~  192 (372)
                      .+.++||++++.++.          .++.|.+||+.+++.+.......+.    ......+.++|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888875          3678999999999777665432111    123668999999999998875  457


Q ss_pred             EEE--EECCCCceeeecceeec----ccc----cceecc-------CCC-----Cc------------cccEEEEEEcCC
Q 017421          193 VHI--VDVGSGTMESLANVTEI----HDG----LDFSAA-------DDG-----GY------------SFGIFSLKFSTD  238 (372)
Q Consensus       193 i~v--wd~~~~~~~~~~~~~~~----~~~----~~~~~~-------~~~-----~h------------~~~i~~~~~sp~  238 (372)
                      +.+  +|+.+  .. .......    ..+    ..+.++       ...     ++            ..+.   . .++
T Consensus       149 v~V~~iD~~t--v~-~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~  221 (368)
T 1mda_H          149 AGLSVPGASD--DQ-LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANY  221 (368)
T ss_dssp             EEEEETTTEE--EE-EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETT
T ss_pred             EEEEEEchhh--ce-EEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-ccc
Confidence            888  88866  11 1111000    000    000000       000     00            0111   2 455


Q ss_pred             CCEEEEEeCCCeEEEEECCCCe--EEEEeec-------C---CCCeEEEEEeCCCCCEEEEEeC---------CCeEEEE
Q 017421          239 GRELVAGSSDDCIYVYDLEANK--LSLRILA-------H---TSDVNTVCFGDESGHLIYSGSD---------DNLCKVN  297 (372)
Q Consensus       239 ~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-------~---~~~v~~~~~sp~~~~~l~s~~~---------dg~i~vw  297 (372)
                      +..++..+. +.|.+.|+.+..  .+..+..       +   ......++++ ++++.++++..         ++.+.++
T Consensus       222 ~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s-~dg~~lyV~~~~~~~~~~~~~~~~~Vi  299 (368)
T 1mda_H          222 PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL-KNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE-TTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             CCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc-CCCCEEEEEeccccCcccccCCCEEEE
Confidence            555555555 888888986542  2222211       0   1111226899 88887776533         2356699


Q ss_pred             eccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEe-eceEEEeecccceEEEEEeee
Q 017421          298 SVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIY-SPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       298 d~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      |+.+.+     ........++|+|||+.++.+.     -+ +++|.++|..+++.+....+.
T Consensus       300 D~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~-----~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          300 TASVGQTSGPISNGHDSDAIIAAQDGASDNYAN-----SAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             ESSSCCEEECCEEEEEECEEEECCSSSCEEEEE-----ETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ECCCCeEEEEEECCCCcceEEECCCCCEEEEEc-----cCCCCeEEEEECCCCcEEEEEECC
Confidence            997654     1123578999999998766553     12 799999999999999887654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.85  E-value=2.5e-06  Score=77.90  Aligned_cols=205  Identities=10%  Similarity=-0.060  Sum_probs=125.2

Q ss_pred             CCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe----------CCCeEEEEEC
Q 017421          134 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDV  198 (372)
Q Consensus       134 ~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~  198 (372)
                      ++++.+.+....     +.|.++|+.+.+.+.......   . . .+.++||+++++++.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~---~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF---L-P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS---S-C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC---C-C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            466665555442     699999999997776644322   2 3 899999999988876          3678999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCC------
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTS------  270 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~------  270 (372)
                      .+.+......+.....   +      ........+.|+|||++++++..  ++.|.+.|+.+++.+.++.....      
T Consensus       157 ~t~~vv~~I~v~g~~r---~------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~  227 (426)
T 3c75_H          157 VTFLPIADIELPDAPR---F------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPA  227 (426)
T ss_dssp             TTCCEEEEEEETTCCC---C------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             CCCcEEEEEECCCccc---c------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccC
Confidence            9988755443220000   0      00012346789999999988764  57899999999988777653110      


Q ss_pred             -CeEEEEEeCCCC-------------------------------------CEEEEEeCCCeEEEEeccccc----C----
Q 017421          271 -DVNTVCFGDESG-------------------------------------HLIYSGSDDNLCKVNSVLLLT----R----  304 (372)
Q Consensus       271 -~v~~~~~sp~~~-------------------------------------~~l~s~~~dg~i~vwd~~~~~----~----  304 (372)
                       .-.-+.++ ++|                                     ..++..+..+.+.+.|+....    .    
T Consensus       228 g~~~~v~~~-~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          228 SPTVFYMNC-RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             ETTEEEEEE-TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             CCcEEEEEc-CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence             00112333 333                                     333333444556666653100    0    


Q ss_pred             ----------CCCCeeEEEeccCCCeEEEEeeeeE----EEeeceEEEeecccceEEEEEeee
Q 017421          305 ----------SINPCNKYLFNPCNKYLIIYLILVI----SIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       305 ----------~~~~v~~~~~s~~g~~l~~~~~~~~----~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                                .......++++|+++.+++......    +..++.|.+.|..+++.+..+.+-
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg  369 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG  369 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC
Confidence                      0011223788999888877642100    001357889999999988877543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=3.3e-07  Score=86.03  Aligned_cols=192  Identities=10%  Similarity=-0.041  Sum_probs=131.2

Q ss_pred             CCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcceEEEEE-C-CCCCEEEEEeC------------------CCeE
Q 017421          135 DGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-S-PDQRHLVYASM------------------SPIV  193 (372)
Q Consensus       135 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~~------------------dg~i  193 (372)
                      ||+++.+... +..|.+.|+.+.+...... ... ...+..+++ + |+++++++++.                  ++.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~-ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILE-IPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEE-CSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEe-CCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            7888776654 5579999999986655332 222 224788887 5 99999988852                  4579


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC------------------------
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------------------------  249 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg------------------------  249 (372)
                      .+.|..+.+..........                 ...++++|+|+++++.+.+.                        
T Consensus       178 tvID~~t~~v~~qI~Vgg~-----------------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~  240 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSGN-----------------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  240 (595)
T ss_dssp             EEEETTTTEEEEEEEESSC-----------------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             EEEECCCCeEEEEEEeCCC-----------------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence            9999998776544443221                 23356677777776666432                        


Q ss_pred             --------------eEEEEECCC--CeE-EEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc--------
Q 017421          250 --------------CIYVYDLEA--NKL-SLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT--------  303 (372)
Q Consensus       250 --------------~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~--------  303 (372)
                                    .|.+.|.++  ++. +..+.. .....++.++ |||+++++++ .+..|.++|+.+.+        
T Consensus       241 ~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~  318 (595)
T 1fwx_A          241 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD  318 (595)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred             eeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence                          377778877  444 445543 2355789999 9999877665 67899999998541        


Q ss_pred             ---------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc----------ceEEEEEeee
Q 017421          304 ---------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL----------LRTFYSFMVH  353 (372)
Q Consensus       304 ---------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~----------~~~~~~~~~h  353 (372)
                               ........++|+|+| ++.+..     .-|++|..||+..          .+.+....+|
T Consensus       319 ~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~-----~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~  381 (595)
T 1fwx_A          319 PRSAVVAEPELGLGPLHTAFDGRG-NAYTSL-----FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  381 (595)
T ss_dssp             GGGGEEECCBCCSCEEEEEECTTS-EEEEEE-----TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             cccceEEEcCCCCCcceEEECCCC-eEEEEE-----ecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence                     223467899999999 666552     2489999999988          5566665544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.78  E-value=6.9e-07  Score=75.27  Aligned_cols=173  Identities=13%  Similarity=0.076  Sum_probs=115.9

Q ss_pred             eEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCce
Q 017421          127 AYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTM  203 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~  203 (372)
                      ..++.|+ ++.++.+.+.+|  .|+++|+.+++.+.......    ........++++.|.... .++.+.+||.++.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence            5788998 677777777766  89999999997776644322    233322333455555554 588999999999887


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--C---CCeEEEEEe
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--T---SDVNTVCFG  278 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~s  278 (372)
                      ........  +                 ...+.+|++.|+.+..++.|.++|..+.+.+.++...  .   ..++.+.|.
T Consensus       120 ~~ti~~~~--e-----------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          120 VRSFNYDG--E-----------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             EEEEECSS--C-----------------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             EEEEECCC--C-----------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            65544311  1                 1223356777777666788999999999888777632  2   334567886


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccccc-----------C-------CCCCeeEEEeccCCCeEEEEe
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLLLT-----------R-------SINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~~~-----------~-------~~~~v~~~~~s~~g~~l~~~~  325 (372)
                        +|++.+..-.++.|.+.|.++.+           .       ...-.+.++|+|+++.|.+..
T Consensus       181 --~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          181 --DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             --TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             --CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence              67666655568889998886322           1       123458899999987776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.78  E-value=9.4e-06  Score=68.64  Aligned_cols=195  Identities=12%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             ccCCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          120 VDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       120 ~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      +.+....+.+++|+|+++. +++...++.|...|+. +..+.... ..+. ...-.+++.+++.++++.-.++.+.++++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-LDFV-KDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-CSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-cCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            3455678999999997664 4557778889999987 65554432 2222 35788999988877666556788999988


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeEEEEee-------cC
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRIL-------AH  268 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~-------~~  268 (372)
                      ..............  .+.     ..........++|+|.++.|.++.......+|.++   ....+..+.       .+
T Consensus        99 ~~~~~i~~~~~~~~--~~~-----~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           99 TPNSEVKILKKIKI--PLQ-----ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             CTTCCEEEEEEEEC--CCS-----SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             CCCCeeeeeeeecc--ccc-----cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence            76543111111110  000     00123467899999998777766665444444443   111122221       13


Q ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------ccc-------CCCCCeeEEEeccCCCeEEEE
Q 017421          269 TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLT-------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       269 ~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~-------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ...+.+++++|..+++++.......|.++|..       .+.       ........++|.++|+..+++
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            34678999998888888888788888888875       111       112466899999999876666

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.70  E-value=1.8e-06  Score=72.75  Aligned_cols=172  Identities=9%  Similarity=-0.018  Sum_probs=115.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                      ..++.|+ ++.++++.+.+|.|+++|+.+++.+... . ... ..-..+++.. ++..+..-.++.+.+||.++.+....
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4788887 4666778888899999999999777665 2 221 1112355542 23444445689999999999887655


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec--CC---CCeEEEEEeCCC
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HT---SDVNTVCFGDES  281 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~sp~~  281 (372)
                      ....  .+               -..++  +|++.|+.+..++.|.++|..+.+.+.++..  +.   ..++.+.|.  +
T Consensus       132 i~~~--~e---------------GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--d  190 (268)
T 3nok_A          132 TRYS--GE---------------GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--N  190 (268)
T ss_dssp             EECS--SC---------------CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred             EeCC--Cc---------------eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--C
Confidence            4431  11               12233  5678888777789999999999988877763  22   245677886  7


Q ss_pred             CCEEEEEeCCCeEEEEeccccc-------------------CCCCCeeEEEeccCCCeEEEE
Q 017421          282 GHLIYSGSDDNLCKVNSVLLLT-------------------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~~~-------------------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      |++.+..-.++.|.+.|.++.+                   ....-.+.++|+|+++.|++.
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            7666555567889998886322                   112356889999987766654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.68  E-value=2.9e-05  Score=66.39  Aligned_cols=199  Identities=7%  Similarity=-0.045  Sum_probs=121.7

Q ss_pred             CceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCc
Q 017421          125 SRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT  202 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~  202 (372)
                      ..+.+++|++++..|. +-...+.|.++++...... ..  .......+..++++|++..|+.+ ...+.|.++++....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~--~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~  112 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TI--IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EE--ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EE--EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence            3567899999766555 4455689999998765322 11  11112357899999976665555 456789999987543


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEee-cCCCCeEEEEEe
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG  278 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s  278 (372)
                      ......  .              .......++++|++..|..+..   .+.|..+++.... ...+. ........++++
T Consensus       113 ~~~~~~--~--------------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A          113 RRVLFD--T--------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             CEEEEC--S--------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEE
T ss_pred             EEEEEE--C--------------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEc
Confidence            221111  0              0125688999997665554443   3688888886432 22222 233467899999


Q ss_pred             CCCCCEEEEE-eCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          279 DESGHLIYSG-SDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       279 p~~~~~l~s~-~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                       +++..|+.+ ...+.|.++|+....     ........++..  +..|+.+..     ..+.|..+|..+++.+..+.
T Consensus       176 -~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~-----~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          176 -AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDW-----KTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             -TTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEET-----TTTEEEEEETTTTEEEEEEC
T ss_pred             -CCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEEC-----CCCeEEEEeCCCCCceEEEc
Confidence             766655544 456889999986211     112233455543  445554420     23678888888888776654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.68  E-value=5.7e-07  Score=84.44  Aligned_cols=179  Identities=9%  Similarity=0.017  Sum_probs=117.1

Q ss_pred             CCceEEEEE-C-CCCCEEEEEe------------------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE
Q 017421          124 TSRAYVSQF-S-ADGSLFVAGF------------------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH  183 (372)
Q Consensus       124 ~~~v~~~~~-s-~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (372)
                      ...+..+++ + |+++++++++                  .++.+.++|..+.+...+.... +   ....++++|+|++
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg-g---~pd~~~~spdGk~  208 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-G---NLDNCDADYEGKW  208 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES-S---CCCCEEECSSSSE
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC-C---CccceEECCCCCE
Confidence            345788888 5 9999998884                  3457999999988665554332 2   3566889999999


Q ss_pred             EEEEeCCC--------------------------------------eEEEEECCC--Cce-eeecceeecccccceeccC
Q 017421          184 LVYASMSP--------------------------------------IVHIVDVGS--GTM-ESLANVTEIHDGLDFSAAD  222 (372)
Q Consensus       184 l~~~~~dg--------------------------------------~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~  222 (372)
                      +++.+.+.                                      .|.|.|..+  ++. ......             
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-------------  275 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-------------  275 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-------------
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-------------
Confidence            99888653                                      234444443  111 001100             


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe------------EEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421          223 DGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK------------LSLRILAHTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       223 ~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~------------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                          .....++.++|||+++++++ .+.+|.++|+.+.+            ....+. -......++|+ ++|...++.-
T Consensus       276 ----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~-~dG~aY~t~~  349 (595)
T 1fwx_A          276 ----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFD-GRGNAYTSLF  349 (595)
T ss_dssp             ----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEEC-TTSEEEEEET
T ss_pred             ----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEEC-CCCeEEEEEe
Confidence                01456789999999887665 46789999999653            233332 33467899999 8994444555


Q ss_pred             CCCeEEEEeccc----------cc------CCCCC-----eeEEEeccCCCeEEEEe
Q 017421          290 DDNLCKVNSVLL----------LT------RSINP-----CNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       290 ~dg~i~vwd~~~----------~~------~~~~~-----v~~~~~s~~g~~l~~~~  325 (372)
                      .|+.|.+||+..          .+      .+..+     ...+.++|||++|+++.
T Consensus       350 ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          350 LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            799999999864          11      11111     12335689999999884

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.66  E-value=1.2e-06  Score=85.60  Aligned_cols=203  Identities=10%  Similarity=0.079  Sum_probs=130.7

Q ss_pred             CCEEEEEeC------CCcEEEEeCCCCeEEEEeeecccC-----------------------------CcceEEEEECCC
Q 017421          136 GSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSL-----------------------------RWTVTDTSLSPD  180 (372)
Q Consensus       136 ~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~  180 (372)
                      +..+++++.      ++.|..||..+++.+.........                             ......++++|+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            345555543      689999999999877654332211                             001135788898


Q ss_pred             CCEEEEEeCCC-------------------eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC--
Q 017421          181 QRHLVYASMSP-------------------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--  239 (372)
Q Consensus       181 ~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--  239 (372)
                      +..++.++.++                   .|..+|.++|+.+-...... +....+.      .......+....+|  
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~-~d~wd~~------~~~~p~l~~~~~dG~~  326 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP-GDNWDYT------STQPMILADIKIAGKP  326 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCC------CCSCCEEEEEEETTEE
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC-Ccccccc------cCCCcEEEecccCCcE
Confidence            89988887664                   49999999998754433211 1111010      01122233444577  


Q ss_pred             -CEEEEEeCCCeEEEEECCCCeEEEEeecCC-----------CCe------------------------EEEEEeCCCCC
Q 017421          240 -RELVAGSSDDCIYVYDLEANKLSLRILAHT-----------SDV------------------------NTVCFGDESGH  283 (372)
Q Consensus       240 -~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------~~v------------------------~~~~~sp~~~~  283 (372)
                       ..++.++.+|.++++|..+++.+..+....           .++                        ..++++ |++.
T Consensus       327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d-p~~~  405 (677)
T 1kb0_A          327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN-PQTG  405 (677)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE-TTTT
T ss_pred             eeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc-CCCC
Confidence             678899999999999999999877664221           011                        146888 7777


Q ss_pred             EEEEEeC-------------------------------------------CCeEEEEeccccc-----CCCCCeeEEEec
Q 017421          284 LIYSGSD-------------------------------------------DNLCKVNSVLLLT-----RSINPCNKYLFN  315 (372)
Q Consensus       284 ~l~s~~~-------------------------------------------dg~i~vwd~~~~~-----~~~~~v~~~~~s  315 (372)
                      ++++...                                           .|.|..||+.+.+     .+..++.+..+.
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~  485 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT  485 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE
Confidence            7766532                                           2779999987543     233344555566


Q ss_pred             cCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          316 PCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      ..+..++.++      .|+.+++||..+|+++.++..
T Consensus       486 ~~g~~v~~g~------~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          486 TAGNVVFQGT------ADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             ETTTEEEEEC------TTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCCEEEEEC------CCCcEEEEECCCCceeeeeeC
Confidence            6777777664      588999999999999988853

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.66  E-value=1.4e-06  Score=85.24  Aligned_cols=195  Identities=11%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             CCcEEEEeCCCCeEEEEeeecccC----------------------------CcceEEEEECCCCCEEEEEeCCCe----
Q 017421          145 ASQIRIYDVERGWKIQKDILAKSL----------------------------RWTVTDTSLSPDQRHLVYASMSPI----  192 (372)
Q Consensus       145 dg~i~vwd~~~~~~~~~~~~~~~~----------------------------~~~v~~~~~~~~~~~l~~~~~dg~----  192 (372)
                      +|.|..||..+++.+.......+.                            ......++++|+...++.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            689999999999877654321110                            011135788898889998887764    


Q ss_pred             ---------------EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC---EEEEEeCCCeEEEE
Q 017421          193 ---------------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVY  254 (372)
Q Consensus       193 ---------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~---~l~s~s~dg~i~iw  254 (372)
                                     |..+|.++|+.+-...... +....+.      ...++.......+|+   .++.++.+|.++++
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~-~d~wd~~------~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l  334 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP-GDAWDYT------ATQHMILAELPIDGKPRKVLMQAPKNGFFYVI  334 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST-TCCSCCC------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCC-ccccccc------CCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence                           9999999998754433210 1100000      111222223333565   78889999999999


Q ss_pred             ECCCCeEEEEeecCC-CC--------------------------------------eEEEEEeCCCCCEEEEEeC-----
Q 017421          255 DLEANKLSLRILAHT-SD--------------------------------------VNTVCFGDESGHLIYSGSD-----  290 (372)
Q Consensus       255 d~~~~~~~~~~~~~~-~~--------------------------------------v~~~~~sp~~~~~l~s~~~-----  290 (372)
                      |.++|+.+....... ..                                      -..++|+ |+..++++...     
T Consensus       335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d-p~~~~~yv~~~~~~~~  413 (689)
T 1yiq_A          335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN-PDTGLVYIPAHIMSAY  413 (689)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE-TTTTEEEEEEEECCEE
T ss_pred             ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC-CCCCEEEEecccccee
Confidence            999999874432110 00                                      0126788 66666665522     


Q ss_pred             ----------------------------------------CCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421          291 ----------------------------------------DNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       291 ----------------------------------------dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                                                              +|.|+.||+.+.+     .+..++..-.+...+..++.++
T Consensus       414 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt  493 (689)
T 1yiq_A          414 YEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS  493 (689)
T ss_dssp             EECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC
T ss_pred             eeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC
Confidence                                                    3779999997543     2223333345556667777664


Q ss_pred             eeeEEEeeceEEEeecccceEEEEEeee
Q 017421          326 ILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       326 ~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                            .|+.++.||..+|+++..+...
T Consensus       494 ------~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          494 ------ADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             ------TTSEEEEEETTTCCEEEEEECS
T ss_pred             ------CCCcEEEEECCCCccceeeeCC
Confidence                  5899999999999999888643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.65  E-value=4.3e-06  Score=82.72  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=96.4

Q ss_pred             ceEEEEEC-CCCCEEEEEeC-CC----cEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeE
Q 017421          126 RAYVSQFS-ADGSLFVAGFQ-AS----QIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIV  193 (372)
Q Consensus       126 ~v~~~~~s-~~~~~l~~~~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i  193 (372)
                      .+...+|| |||++||.+.. +|    +|+++|+.++ +.+....     ......+.|+||++.|+....+     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-----SGTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-----EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-----cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            67889999 99999886533 23    4999999987 5322111     1124578999999988877664     258


Q ss_pred             EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe-EE--EEee-
Q 017421          194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANK-LS--LRIL-  266 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~~-  266 (372)
                      +++++.++...........             .......+.|+|||++|+..+.   ...|.++|+.++. ..  ..+. 
T Consensus       250 ~~~~lgt~~~~~~lv~~~~-------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEH-------------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             EEEETTSCGGGCEEEEECC-------------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             EEEECCCCchhcEEEEecC-------------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence            8888877642211110000             1123567899999998876553   3458899998752 12  3333 


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCC--C--eEEEEecc
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDD--N--LCKVNSVL  300 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~d--g--~i~vwd~~  300 (372)
                      .......++.|+ .++.+++....+  +  .|..+|+.
T Consensus       317 ~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          317 REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT
T ss_pred             CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC
Confidence            344566777776 444455555443  2  56666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.65  E-value=5.3e-06  Score=69.28  Aligned_cols=175  Identities=13%  Similarity=0.072  Sum_probs=114.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCC
Q 017421          125 SRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSG  201 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~  201 (372)
                      .-..++.|++ +.++.+.+.+|  .|+++|+.+++.+.......    .+......++++.|. ..-.++.+.+||.++.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP----PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC----CcceeEEEEeCCEEEEEEeeCCEEEEEECCcC
Confidence            3467899986 56666666654  89999999997776543322    122222222344444 4456899999999998


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-----CCeEEEE
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVC  276 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~  276 (372)
                      +.........  +               -..++  +++..|+.+..++.|.++|..+.+.+.++.-..     ..++.+.
T Consensus        96 ~~~~ti~~~~--~---------------Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           96 TPRARFRYPG--E---------------GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             EEEEEEECSS--C---------------CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             cEEEEEeCCC--C---------------ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence            8755544221  1               12333  567777777778899999999998887776321     3456777


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccccc-------------------CCCCCeeEEEeccCCCeEEEEe
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLLT-------------------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~-------------------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      |.  +|++++..-.+..|.+.|.++.+                   ....-.+.++++|+++.|.+..
T Consensus       157 ~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          157 WV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             Ee--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            75  67766655567788888886322                   1123458899999877666553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.64  E-value=3.8e-09  Score=95.58  Aligned_cols=186  Identities=11%  Similarity=0.078  Sum_probs=90.1

Q ss_pred             eEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceE-EEEECCCCCEE
Q 017421          106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHL  184 (372)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l  184 (372)
                      +..++....+..+.+..  +.+.+..+..++..+++++.|+.|+.||..+++.+......  ....+. +..+. ++..+
T Consensus        21 v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--~~~~~~~sp~~~-~~~~v   95 (369)
T 2hz6_A           21 LHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--IPELVQASPCRS-SDGIL   95 (369)
T ss_dssp             EEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC--HHHHHTTCSCC------C
T ss_pred             EEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc--CccccccCceEe-cCCEE
Confidence            33333333333344433  33444445567777888889999999999887554332111  011111 11111 34567


Q ss_pred             EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 017421          185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR  264 (372)
Q Consensus       185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  264 (372)
                      ++++.++.|+.||.++|+........                    ....++|++..+++++.++.|..||.++++.+..
T Consensus        96 ~~g~~dg~v~a~D~~tG~~~w~~~~~--------------------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           96 YMGKKQDIWYVIDLLTGEKQQTLSSA--------------------FADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             CCCEEEEEEEEECCC------------------------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             EEEeCCCEEEEEECCCCcEEEEecCC--------------------CcccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            77888999999999999864333210                    0134556788899999999999999999987655


Q ss_pred             eecCCCCeEEEEEeCCCC---CEEEEEeCCCeEEEEeccccc-----CCCCCee-EEEeccCCC
Q 017421          265 ILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVNSVLLLT-----RSINPCN-KYLFNPCNK  319 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~---~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~-~~~~s~~g~  319 (372)
                      +..+.  .....+. .+.   ..+++++.||.|+.||.++.+     ....++. ...++++|.
T Consensus       156 ~~~~~--~~~~~~~-~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          156 ATYFD--YAASLPE-DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEEEE--ECCBCCC-CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             Eeccc--ccCcccc-CCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            54221  1223333 321   456778899999999987543     1233433 345556664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.63  E-value=2.7e-06  Score=83.25  Aligned_cols=191  Identities=12%  Similarity=0.083  Sum_probs=121.0

Q ss_pred             EEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEeeeccc------CCcceEEEEECCCCC-
Q 017421          129 VSQFSADGSLFVAGFQASQ-------------------IRIYDVERGWKIQKDILAKS------LRWTVTDTSLSPDQR-  182 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~-  182 (372)
                      .++++|++.+++++..++.                   |..+|..+++.+........      ...++.......+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5789998899998887763                   99999999977765432211      111122222223554 


Q ss_pred             --EEEEEeCCCeEEEEECCCCceeeecceeecc-------------------------cccceeccCCCCccccEEEEEE
Q 017421          183 --HLVYASMSPIVHIVDVGSGTMESLANVTEIH-------------------------DGLDFSAADDGGYSFGIFSLKF  235 (372)
Q Consensus       183 --~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~h~~~i~~~~~  235 (372)
                        .++.++.+|.++++|..+|+.+.........                         ......+...+++  .-..++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~--~w~~~a~  396 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH--DWQPMSY  396 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS--CSSCCEE
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc--CCCcceE
Confidence              6888899999999999999875332211100                         0000011111111  1123788


Q ss_pred             cCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCeEEEEeecCCC
Q 017421          236 STDGRELVAGSS---------------------------------------------DDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       236 sp~~~~l~s~s~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      +|+..++++.+.                                             +|.|..||+.+++.+..+..+. 
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-  475 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-  475 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-
Confidence            888877776532                                             3779999999999988877543 


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEE
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLII  323 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~  323 (372)
                      ++..-.+. ..+.++++++.||.|+.||.++.+       .......-+.|..+|+..++
T Consensus       476 ~~~~g~~~-tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          476 IFNGGTLS-TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CccCccce-ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            33334555 577899999999999999998554       22222244677888875544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.61  E-value=2.2e-05  Score=69.22  Aligned_cols=183  Identities=12%  Similarity=0.047  Sum_probs=115.7

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-----------------cCCcceEEEEECC-CCCEEEE
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------------SLRWTVTDTSLSP-DQRHLVY  186 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~~  186 (372)
                      ....+++|+++++++.++..++.|..|+..++.... .....                 .....+..+++.+ +++ |++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            345678899999877788888999999987653321 11100                 0012478899998 554 555


Q ss_pred             EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeC-----------------C
Q 017421          187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS-----------------D  248 (372)
Q Consensus       187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~-----------------d  248 (372)
                      +...+.|..+|..++.........   .+         ......+.+++.| +|++.++-..                 +
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~---~~---------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  164 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSV---DG---------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT  164 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEE---TT---------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred             EECCCCEEEEeCCCCEEEEecccC---CC---------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence            555556888887765432221110   00         0112578899999 9987776532                 3


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE-eCCCeEEEEeccccc--------CCCCCeeEEEeccCCC
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNK  319 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~-~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~  319 (372)
                      +.|..||..+++...... .......++++ ++++.|+.+ ...+.|.+|++....        .... ...+++.++|+
T Consensus       165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH  241 (322)
T ss_dssp             EEEEEEETTTTEEEEEEE-EESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred             ceEEEEeCCCCEEEEecc-CCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence            679999988776433222 22345679999 898866655 456889999876211        1122 67899999998


Q ss_pred             eEEEE
Q 017421          320 YLIIY  324 (372)
Q Consensus       320 ~l~~~  324 (372)
                      +.++.
T Consensus       242 l~va~  246 (322)
T 2fp8_A          242 FWVSS  246 (322)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66655

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=4e-06  Score=81.89  Aligned_cols=193  Identities=12%  Similarity=0.101  Sum_probs=123.5

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEEEeeecccC------CcceEEEEECCCC-
Q 017421          128 YVSQFSADGSLFVAGFQAS-------------------QIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQ-  181 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-  181 (372)
                      ..++++|++..++.+..++                   .|..+|..+++.+.........      ......+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3578999999888877654                   4999999999776654432211      1122223333467 


Q ss_pred             --CEEEEEeCCCeEEEEECCCCceeeecceeecc-------cc-c-------------ceeccCCCCccccEEEEEEcCC
Q 017421          182 --RHLVYASMSPIVHIVDVGSGTMESLANVTEIH-------DG-L-------------DFSAADDGGYSFGIFSLKFSTD  238 (372)
Q Consensus       182 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~-~-------------~~~~~~~~~h~~~i~~~~~sp~  238 (372)
                        ..++.++.+|.++++|..+|+.+.........       .+ .             ...+...+++.  -..++++|+
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~--w~~~a~dp~  403 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN--WHPMSFNPQ  403 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC--SSCCEEETT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC--CCCceEcCC
Confidence              67888999999999999999875443321100       00 0             00011111111  125788998


Q ss_pred             CCEEEEEeCC-------------------------------------------CeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          239 GRELVAGSSD-------------------------------------------DCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       239 ~~~l~s~s~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      +.++++...+                                           |.|..||+.+++.+..+. +..++...
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g  482 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGG  482 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCC
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCc
Confidence            8888775432                                           789999999999888876 33445555


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .+. ..+.++++++.||.+++||.++.+       .......-+.|.++|+.+++.
T Consensus       483 ~~~-~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          483 TLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             EEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ceE-eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence            566 677788889999999999998543       222223446677888755443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.45  E-value=1.2e-05  Score=70.89  Aligned_cols=161  Identities=12%  Similarity=0.052  Sum_probs=102.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      +..|.+++.++.|..+|.. +.......   .....+.++...+++. +..++.++.|..+|.. ++........     
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~---~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-----  175 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFK---TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-----  175 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-----
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEc---CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-----
Confidence            4557778888999999988 65444322   1222456667777776 5567778999999998 6543322211     


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEE
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK  295 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~  295 (372)
                                 ...+.++...+++.+++ ++  +.|..+| .+++...........+.++... ++|. |..++.++.|.
T Consensus       176 -----------~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g~-l~v~t~~~gl~  238 (330)
T 3hxj_A          176 -----------DAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS-EDGT-IYVTSLDGHLY  238 (330)
T ss_dssp             -----------SCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC-TTSC-EEEEETTTEEE
T ss_pred             -----------CCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEEC-CCCe-EEEEcCCCeEE
Confidence                       12455666777777554 44  7799999 7777776666555678888887 7765 44456677788


Q ss_pred             EEeccc-----ccCCCCCeeEEEeccCCCeEEEE
Q 017421          296 VNSVLL-----LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       296 vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .+|...     .......+..+.+.++|.+.+..
T Consensus       239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t  272 (330)
T 3hxj_A          239 AINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGS  272 (330)
T ss_dssp             EECTTSCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred             EECCCCCEeEEeeCCCCccccceEcCCCeEEEec
Confidence            877531     11222334456666677655544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.44  E-value=0.00011  Score=62.73  Aligned_cols=184  Identities=9%  Similarity=0.010  Sum_probs=108.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEE--EeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeecceeecc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIH  213 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~  213 (372)
                      ++|+.+.. +.|+.+++.......  ...........+..++|++++..|+.+. ..+.|.++++.+........  .  
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~--   76 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--Q--   76 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--T--
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--C--
Confidence            45555554 478888887643210  0000111112478999999776666554 47899999997654322111  0  


Q ss_pred             cccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC--
Q 017421          214 DGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD--  290 (372)
Q Consensus       214 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~--  290 (372)
                                  .......++++|++..|+ +-...+.|.++++..................++++ +++..|+.+..  
T Consensus        77 ------------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd-~~~g~lyv~~~~~  143 (267)
T 1npe_A           77 ------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD-PVRGNLYWTDWNR  143 (267)
T ss_dssp             ------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTTTEEEEEECCS
T ss_pred             ------------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEe-eCCCEEEEEECCC
Confidence                        112578899999765554 44556889999987543222222222567899999 75555544443  


Q ss_pred             -CCeEEEEeccc-----cc-CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          291 -DNLCKVNSVLL-----LT-RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       291 -dg~i~vwd~~~-----~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                       .+.|..+++..     +. ........++++|++..|+.+..     ..+.|..++...
T Consensus       144 ~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~-----~~~~I~~~~~~g  198 (267)
T 1npe_A          144 DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA-----GTHRAECLNPAQ  198 (267)
T ss_dssp             SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTE
T ss_pred             CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC-----CCCEEEEEecCC
Confidence             46888887652     11 22345788999999887776631     124455555543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.42  E-value=2.1e-05  Score=70.58  Aligned_cols=98  Identities=9%  Similarity=-0.063  Sum_probs=68.9

Q ss_pred             cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe----------CCCeEEEEECCCCceeeecceeeccccc
Q 017421          147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGL  216 (372)
Q Consensus       147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~  216 (372)
                      .|.++|..+++.+.......   .+  .+.++||+++++++.          .++.|.+||+.+++............  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~---~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~--  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF---LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT---TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred             eEEEEECCCCeEEEEEeCCC---CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence            78899999997776644322   23  799999999998886          36889999999998765544320000  


Q ss_pred             ceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEE--EECCC
Q 017421          217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYV--YDLEA  258 (372)
Q Consensus       217 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~i--wd~~~  258 (372)
                       +.      .......+.++|||++++++..  +..|.+  +|+.+
T Consensus       120 -~~------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          120 -FS------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             -CC------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             -cc------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence             00      0012446899999999988764  457888  88866

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.41  E-value=2.5e-05  Score=66.42  Aligned_cols=154  Identities=8%  Similarity=0.043  Sum_probs=101.2

Q ss_pred             ceEEEEECCCCCEEEEEeC--CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeC
Q 017421          171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSS  247 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~  247 (372)
                      ....+.|++++.++++.+.  ++.|.++|+.+++......+...               .....+++.  ++.|. +.-.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~---------------~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS---------------YFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT---------------CCEEEEEEE--TTEEEEEETT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC---------------cceEEEEEe--CCEEEEEEec
Confidence            3679999998755554443  57999999999987654432211               012245554  44554 4455


Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCC---CCeeEEEecc
Q 017421          248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSI---NPCNKYLFNP  316 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~---~~v~~~~~s~  316 (372)
                      ++.+.++|..+.+.+.++......  ...++ ++|+.++++..++.|.++|..+.+        ...   ..++.+.|. 
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt-~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLA-TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS--CCEEE-ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC--eEEEE-ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            789999999999998888633121  23355 567766666678999999987543        111   135677887 


Q ss_pred             CCCeEEEEeeeeEEEe-eceEEEeecccceEEEEEee
Q 017421          317 CNKYLIIYLILVISIY-SPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~~~~~  352 (372)
                      +|+ +.+..      | ++.|.+-|..+++.+..+..
T Consensus       161 dg~-lyvn~------~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          161 NGE-VWANI------WQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             TTE-EEEEE------TTSSEEEEEETTTCCEEEEEEC
T ss_pred             CCE-EEEec------CCCCeEEEEECCCCcEEEEEEC
Confidence            664 44332      3 57888889999988777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.36  E-value=0.00016  Score=63.12  Aligned_cols=186  Identities=12%  Similarity=0.065  Sum_probs=111.3

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC--CeEEEEECCCCc
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGT  202 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~  202 (372)
                      ....+++|+++++++++-..++.|..||..... .. ....   ...+..+++.++++++++....  ..|..+|..+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-HATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-EEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-EEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            457789999999977777678899999987642 22 1111   2358899999999966655432  247777877776


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEee---------cCCCCe
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL---------AHTSDV  272 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~---------~~~~~v  272 (372)
                      .........               ......++..+++..+++-..++.|.++|..+++. +....         ..-...
T Consensus       107 ~~~~~~~~~---------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A          107 VETLLTLPD---------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             EEEEEECTT---------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             EEEEEeCCC---------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence            533222110               01234445555555555555688999999876532 21111         111234


Q ss_pred             EEEEEeCCCCCEEEEE-eCCCeEEEEeccc-cc-------CCCCCeeEEEeccCCCeEEEEe-eeeEEEee
Q 017421          273 NTVCFGDESGHLIYSG-SDDNLCKVNSVLL-LT-------RSINPCNKYLFNPCNKYLIIYL-ILVISIYS  333 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~-~~dg~i~vwd~~~-~~-------~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~d  333 (372)
                      ..+  + ++++.|+.+ ...+.|..|++.. ..       ........++++++|++.++.. .+.+..+|
T Consensus       172 ngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          172 NGL--K-RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             EEE--E-EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             CCc--C-cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence            555  6 677666555 4678899999863 11       0113457789999997655442 23344444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.33  E-value=0.00039  Score=62.44  Aligned_cols=144  Identities=12%  Similarity=0.075  Sum_probs=90.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccC------CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecce
Q 017421          136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV  209 (372)
Q Consensus       136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  209 (372)
                      +..+++++.++.|..+|..+++.+.........      ...+.+ ....++..+++++.++.|..+|..+++.......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            667888888899999999988766543321110      112221 1122456788888999999999999986543322


Q ss_pred             eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe-----EEEEEeCCCCCE
Q 017421          210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHL  284 (372)
Q Consensus       210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~~  284 (372)
                      ....            ...++    ..  +..+++++.++.|..+|..+++.+..........     ......   +..
T Consensus       132 ~~~~------------~~~p~----~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~  190 (376)
T 3q7m_A          132 AGEA------------LSRPV----VS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGA  190 (376)
T ss_dssp             SSCC------------CSCCE----EE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTE
T ss_pred             CCce------------EcCCE----EE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCE
Confidence            1100            01111    11  4477888889999999999999887766432211     222332   346


Q ss_pred             EEEEeCCCeEEEEeccc
Q 017421          285 IYSGSDDNLCKVNSVLL  301 (372)
Q Consensus       285 l~s~~~dg~i~vwd~~~  301 (372)
                      ++.+..++.|..+|..+
T Consensus       191 v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          191 AVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             EEECCTTTEEEEEETTT
T ss_pred             EEEEcCCCEEEEEECCC
Confidence            77778889999998763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.32  E-value=1.9e-05  Score=69.49  Aligned_cols=176  Identities=14%  Similarity=0.037  Sum_probs=109.4

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ....+.++...+++. +.+++.++.|..+|.. +........   ....+.++...+++..++ ++  +.|..+| .+++
T Consensus       135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~---~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT---NDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT  205 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC---SSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC
T ss_pred             CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec---CCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc
Confidence            344456667777777 5557778899999988 655443221   223466777877777554 44  7889999 6655


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  282 (372)
                      .......                ....+.++...++|. |..++.++.|..+|. +++.+..+......+.++.+. +++
T Consensus       206 ~~~~~~~----------------~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~g  266 (330)
T 3hxj_A          206 EKWNFYA----------------GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIG-NTD  266 (330)
T ss_dssp             EEEEECC----------------SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEEC-TTS
T ss_pred             EEEEEcc----------------CCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEc-CCC
Confidence            4322211                112466777888876 455666788888874 565656655444444555665 555


Q ss_pred             CEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeee
Q 017421          283 HLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                       .|..++.+|.|..+|...     .......+.++...++|++.+.+.++
T Consensus       267 -~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          267 -TIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             -CEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEECTTS
T ss_pred             -eEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEEcCCC
Confidence             456677788898888531     11233456677777888776665433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.30  E-value=3.8e-05  Score=64.71  Aligned_cols=152  Identities=8%  Similarity=-0.020  Sum_probs=98.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE-eC
Q 017421          171 TVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SS  247 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~  247 (372)
                      -...+.|+ ++.++.+.+.+|  .|+++|+++++......+..                 ........++++.|... -.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-----------------~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-----------------RYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----------------TCCEEEEEEETTEEEEEESS
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-----------------ccceeEEEEeCCEEEEEEee
Confidence            45789998 676677777766  89999999999765544321                 12222222334555444 45


Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCC---CCeeEEEecc
Q 017421          248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSI---NPCNKYLFNP  316 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~---~~v~~~~~s~  316 (372)
                      ++.+.+||..+.+.+.++.... .-..++   +++..|+.+..++.|.++|..+++        ...   ..++.+.|. 
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~~-eG~glt---~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-  180 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYDG-EGWGLT---HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-  180 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECSS-CCCCEE---ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CCEEEEEECccCcEEEEEECCC-CceEEe---cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence            7899999999999999887432 223333   456666666668889999987543        111   223457776 


Q ss_pred             CCCeEEEEeeeeEEEe-eceEEEeecccceEEEEEee
Q 017421          317 CNKYLIIYLILVISIY-SPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       317 ~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~~~~~  352 (372)
                      +|+..+..       | +..|.+.|..+++.+..+..
T Consensus       181 ~G~lyan~-------w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          181 DGEIFANV-------WQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             TTEEEEEE-------TTSSEEEEECTTTCBEEEEEEC
T ss_pred             CCEEEEEE-------ccCCeEEEEECCCCcEEEEEEC
Confidence            66544333       4 57788888888888776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.23  E-value=0.00036  Score=61.34  Aligned_cols=155  Identities=12%  Similarity=0.019  Sum_probs=94.5

Q ss_pred             CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeee-ccc-CCcceEEEEECC-CCCEEEEEeC-----------
Q 017421          125 SRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL-AKS-LRWTVTDTSLSP-DQRHLVYASM-----------  189 (372)
Q Consensus       125 ~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~-~~~~v~~~~~~~-~~~~l~~~~~-----------  189 (372)
                      ..+.++++.+ +++++ ++...+.|..+|..++.. ..... ..+ ....+..+++.+ +|+.+++-..           
T Consensus        80 ~~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             CCEEEEEEETTTTEEE-EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred             CCCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence            3578999998 66544 444445588888765422 11111 111 112467899999 8987666432           


Q ss_pred             ------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCe--
Q 017421          190 ------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANK--  260 (372)
Q Consensus       190 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~--  260 (372)
                            ++.|..||..+++.......                 ....+.++|+|+++.|+.+ +..+.|.+|++....  
T Consensus       158 ~~~~~~~g~v~~~d~~~~~~~~~~~~-----------------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~  220 (322)
T 2fp8_A          158 MDTSDKTGRLIKYDPSTKETTLLLKE-----------------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG  220 (322)
T ss_dssp             HHHTCCCEEEEEEETTTTEEEEEEEE-----------------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT
T ss_pred             hcccCCCceEEEEeCCCCEEEEeccC-----------------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC
Confidence                  36788888877654322110                 0135679999999866554 556899999987421  


Q ss_pred             EEEEeecCCCCeEEEEEeCCCCCEEEEEeC----------CCeEEEEecc
Q 017421          261 LSLRILAHTSDVNTVCFGDESGHLIYSGSD----------DNLCKVNSVL  300 (372)
Q Consensus       261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~----------dg~i~vwd~~  300 (372)
                      ....+....+ ...+++. ++|++.++...          .+.|..+|..
T Consensus       221 ~~~~~~~~~g-P~gi~~d-~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          221 TAEVLVKIPN-PGNIKRN-ADGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             CEEEEEECSS-EEEEEEC-TTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             ccceEEeCCC-CCCeEEC-CCCCEEEEecCcccccccCCCccEEEEECCC
Confidence            1111211223 7889998 88987766544          3567777754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.23  E-value=0.00081  Score=58.62  Aligned_cols=191  Identities=10%  Similarity=0.046  Sum_probs=109.6

Q ss_pred             CCCceEEEEECCCCCEEEEEeCC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      ....+.+++++++|+++++....  ..|..++..++.... ...... ......++..+++..+++-..++.|+++|..+
T Consensus        70 ~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           70 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence            34578899999999976665432  246677777664322 111111 11234555555554455444588999999876


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE-EeCCCeEEEEECCC-CeE--EEEeecCCCCeEEEE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEA-NKL--SLRILAHTSDVNTVC  276 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-~s~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~  276 (372)
                      +.............   ....   +.....+.+  +|+++.|+. -+..+.|..|++.. ++.  ...+.. ......++
T Consensus       148 ~~~~v~~~~~~~~~---~~~~---~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~  218 (306)
T 2p4o_A          148 PSGSIWLEHPMLAR---SNSE---SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFA  218 (306)
T ss_dssp             TEEEEEEECGGGSC---SSTT---CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEE
T ss_pred             CcEeEEEECCcccc---cccc---CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeE
Confidence            43111100000000   0000   011134455  788876654 45568899999874 321  112211 13456789


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEeccc-c------cCCCCCeeEEEec---cCCCeEEEEe
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLL-L------TRSINPCNKYLFN---PCNKYLIIYL  325 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~-~------~~~~~~v~~~~~s---~~g~~l~~~~  325 (372)
                      ++ ++|+++++....+.|.++|..- .      ......+++++|.   |+++.|+++.
T Consensus       219 vd-~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          219 FD-VEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EB-TTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EC-CCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            98 8998877777788899998651 1      1122557999998   8988777664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.22  E-value=0.00067  Score=60.87  Aligned_cols=187  Identities=9%  Similarity=0.075  Sum_probs=108.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421          135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  214 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  214 (372)
                      ++..+++++.++.|..+|..+++.+.........   ......  .+..+++++.++.|..+|..+++............
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA---LSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC---CSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce---EcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence            4567888888999999999998766543322111   111122  24578888899999999999998654433211100


Q ss_pred             ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC----------e-EEEEEeCCCCC
Q 017421          215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGH  283 (372)
Q Consensus       215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~sp~~~~  283 (372)
                      .  .     .+.    ......  +..++.++.++.+..+|..+++.+.........          + .....   .+.
T Consensus       177 ~--~-----~~~----~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~  240 (376)
T 3q7m_A          177 S--L-----RGE----SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNG  240 (376)
T ss_dssp             ---------CCC----CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETT
T ss_pred             e--e-----cCC----CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECC
Confidence            0  0     000    111111  346777888999999999999887766532110          1 11112   245


Q ss_pred             EEEEEeCCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          284 LIYSGSDDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       284 ~l~s~~~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      .++.++.++.+..+|.++.+    ........+...  +..+++++      .++.+..+|..+++.+...
T Consensus       241 ~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~~l~~~~------~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          241 VVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD--GNRIYLVD------QNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE--TTEEEEEE------TTCCEEEEETTTCCEEEEE
T ss_pred             EEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE--CCEEEEEc------CCCeEEEEECCCCcEEEee
Confidence            67777788999999987443    112223333332  33444443      3566667777777665544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.22  E-value=0.00083  Score=60.76  Aligned_cols=201  Identities=8%  Similarity=-0.040  Sum_probs=115.6

Q ss_pred             CCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCC
Q 017421          123 TTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGS  200 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~  200 (372)
                      ....+.+++|++.+..| .+-...+.|..+++........ . ..+ ......+++.+.+..|+ +-...+.|.+.++..
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-~-~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-V-STG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-E-CSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-E-eCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence            34568899999865555 4545668899999876532221 1 111 12356788887655554 444567888888875


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CC-CeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      .....+..                ........++++|.+..|+... .. +.|..+++..................|+|+
T Consensus       191 ~~~~~l~~----------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd  254 (386)
T 3v65_B          191 AHRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTID  254 (386)
T ss_dssp             CSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred             CceEEeec----------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEe
Confidence            43222211                0112578899999766665444 44 689999887543333333334467899999


Q ss_pred             CCCCCEEE-EEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          279 DESGHLIY-SGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       279 p~~~~~l~-s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                       +++..|+ +-...+.|..+|+.-.      .........+++. .+ .|+.+.     ...+.|...+..+|+.+..+
T Consensus       255 -~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td-----~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          255 -YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTD-----WHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             -GGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEE-----TTTTEEEEEETTTCCSCEEE
T ss_pred             -CCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEee-----CCCCeEEEEECCCCcceEEE
Confidence             5555554 4446678999887521      1223345667763 23 333331     02355556665555544433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=0.0025  Score=55.89  Aligned_cols=200  Identities=8%  Similarity=-0.085  Sum_probs=114.6

Q ss_pred             CCceEEEEECCCCCEEE-EEeCCCcEEEEeCCCC---eEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEEC
Q 017421          124 TSRAYVSQFSADGSLFV-AGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDV  198 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~  198 (372)
                      ...+.+++|++++..|. +-...+.|..+++...   ......  ....-..+..+++++.+..|+ +-...+.|.+.++
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence            45678999998765554 4455688999998751   111111  111112467889987555554 4456789999998


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCeEEEEe-ecCCCCeEEE
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D-DCIYVYDLEANKLSLRI-LAHTSDVNTV  275 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~-~~~~~~v~~~  275 (372)
                      ..........  .              .......++++|.+..|+.+.. . +.|..+++.... ...+ ...-.....+
T Consensus       107 ~g~~~~~~~~--~--------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gl  169 (316)
T 1ijq_A          107 KGVKRKTLFR--E--------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGI  169 (316)
T ss_dssp             TSSSEEEEEE--C--------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEE
T ss_pred             CCCceEEEEE--C--------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEE
Confidence            7544322211  0              1125688999997665554443 3 689888886433 2333 2334567899


Q ss_pred             EEeCCCCCEEEEEe-CCCeEEEEeccc-----c-c--CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421          276 CFGDESGHLIYSGS-DDNLCKVNSVLL-----L-T--RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       276 ~~sp~~~~~l~s~~-~dg~i~vwd~~~-----~-~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      +++ +++..|+.+. ..+.|..+|+..     + .  ........+++..  ..|+.+.-     ..+.|...+..+++.
T Consensus       170 a~d-~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~--~~ly~~d~-----~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          170 TLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDI-----INEAIFSANRLTGSD  241 (316)
T ss_dssp             EEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEET-----TTTEEEEEETTTCCC
T ss_pred             EEe-ccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC--CEEEEEEC-----CCCeEEEEeCCCCcc
Confidence            999 6655555554 567899999852     1 0  1123356677642  33433310     235666666666655


Q ss_pred             EEEE
Q 017421          347 FYSF  350 (372)
Q Consensus       347 ~~~~  350 (372)
                      +..+
T Consensus       242 ~~~i  245 (316)
T 1ijq_A          242 VNLL  245 (316)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            4443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.21  E-value=0.00019  Score=60.40  Aligned_cols=152  Identities=5%  Similarity=-0.099  Sum_probs=100.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                      -...+.|+ ++.++.+.+.+|.|+++|+++++..... +....               .--.+++.. +++.+..-.++.
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~---------------FgeGit~~g-~~Ly~ltw~~~~  117 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI---------------FAEGLASDG-ERLYQLTWTEGL  117 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC---------------CEEEEEECS-SCEEEEESSSCE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc---------------ceeEEEEeC-CEEEEEEccCCE
Confidence            35788887 4566777788899999999999876554 22110               112344432 244445556889


Q ss_pred             EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCC---CCeeEEEeccCCC
Q 017421          251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSI---NPCNKYLFNPCNK  319 (372)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~---~~v~~~~~s~~g~  319 (372)
                      +.+||..+.+.+.++... ..-..+++   +++.|+.+..++.|.++|..+++        ...   ..++.+.|. +|+
T Consensus       118 v~V~D~~Tl~~~~ti~~~-~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYS-GEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV  192 (268)
T ss_dssp             EEEEETTTTEEEEEEECS-SCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEECCcCcEEEEEeCC-CceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence            999999999999998743 22244444   56777777778999999987543        111   234566776 665


Q ss_pred             eEEEEeeeeEEEe-eceEEEeecccceEEEEEee
Q 017421          320 YLIIYLILVISIY-SPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       320 ~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~~~~~  352 (372)
                      ..+..       | +..|.+-|..+++.+..+..
T Consensus       193 lyanv-------w~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          193 IYANI-------WHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             EEEEE-------TTCSEEEEECTTTCBEEEEEEC
T ss_pred             EEEEE-------CCCCeEEEEeCCCCcEEEEEEC
Confidence            44333       4 56788888888887776654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.21  E-value=0.00096  Score=59.44  Aligned_cols=199  Identities=8%  Similarity=-0.048  Sum_probs=114.1

Q ss_pred             CCceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCC
Q 017421          124 TSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSG  201 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~  201 (372)
                      ...+.+++|++.+..|. +-...+.|..+++........  ...+ ...+..+++.+.+..|+ +-...+.|.+.++...
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE--EeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            34578999998665554 445668899999876532221  1111 12467889988555554 4455778999998755


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCC-CeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  279 (372)
                      .......                ........++++|.+..|+ +-... +.|..+++............-.....++++ 
T Consensus       149 ~~~~l~~----------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d-  211 (349)
T 3v64_C          149 HRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTID-  211 (349)
T ss_dssp             SCEEEEC----------------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEE-
T ss_pred             ceEEEEe----------------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEe-
Confidence            4222211                0112568899999665554 44444 789999887443222222234467899999 


Q ss_pred             CCCCEEEEE-eCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          280 ESGHLIYSG-SDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       280 ~~~~~l~s~-~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                      +++..|+.+ ...+.|..+|+.-.      .........+++. .+ .|..+.-     ..+.|...+-.+|+....
T Consensus       212 ~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~-----~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          212 YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDW-----HTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEET-----TTTEEEEEETTTCCSCEE
T ss_pred             CCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecC-----CCCeEEEEEccCCCccEE
Confidence            655555544 45678999987521      1223345666763 23 3333310     124555555445554433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.20  E-value=0.00025  Score=69.10  Aligned_cols=194  Identities=13%  Similarity=0.090  Sum_probs=118.3

Q ss_pred             CCcEEEEeCCCCeEEEEeeecccC----------------------------CcceEEEEECCCCCEEEEEeCCC-----
Q 017421          145 ASQIRIYDVERGWKIQKDILAKSL----------------------------RWTVTDTSLSPDQRHLVYASMSP-----  191 (372)
Q Consensus       145 dg~i~vwd~~~~~~~~~~~~~~~~----------------------------~~~v~~~~~~~~~~~l~~~~~dg-----  191 (372)
                      +|.|..+|..+++.+.........                            ......++++|+...++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            589999999999877654321110                            00112468888888888887766     


Q ss_pred             --------------eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC---EEEEEeCCCeEEEE
Q 017421          192 --------------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVY  254 (372)
Q Consensus       192 --------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~---~l~s~s~dg~i~iw  254 (372)
                                    .|..+|.++|+.+-...... +....+.      ...+.....+..+|+   .++.++.+|.++++
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~-~~~wd~~------~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l  329 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP-GDSWDFT------ATQQITLAELNIDGKPRKVLMQAPKNGFFYVL  329 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCC------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC-Ccccccc------CCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence                          39999999998754443210 1110000      012333333334665   68889999999999


Q ss_pred             ECCCCeEEEEeecCC------------CCe------------------------EEEEEeCCCCCEEEEE----------
Q 017421          255 DLEANKLSLRILAHT------------SDV------------------------NTVCFGDESGHLIYSG----------  288 (372)
Q Consensus       255 d~~~~~~~~~~~~~~------------~~v------------------------~~~~~sp~~~~~l~s~----------  288 (372)
                      |..+|+.+.......            .++                        ..++++ |+..++++.          
T Consensus       330 D~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d-p~~g~~yv~~~~~~~~~~~  408 (668)
T 1kv9_A          330 DRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN-PGTGLVYIPYQEVPGVYRN  408 (668)
T ss_dssp             ETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE-TTTTEEEEEEEECCEEECC
T ss_pred             ECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceEC-CCCCEEEEeccccceEeee
Confidence            999999875443211            000                        125777 554554431          


Q ss_pred             --------------------------eCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421          289 --------------------------SDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL  337 (372)
Q Consensus       289 --------------------------~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~  337 (372)
                                                ..+|.|..||+.+.+     ....+.....+...+.++++++      .|+.++
T Consensus       409 ~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~------~dg~l~  482 (668)
T 1kv9_A          409 EGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT------AAGQMH  482 (668)
T ss_dssp             CGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC------TTSEEE
T ss_pred             eccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC------Ccccch
Confidence                                      123779999987543     1222333334445566666664      588999


Q ss_pred             EeecccceEEEEEee
Q 017421          338 LDNYFLLRTFYSFMV  352 (372)
Q Consensus       338 lw~~~~~~~~~~~~~  352 (372)
                      .||..+|+.+..+..
T Consensus       483 a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          483 AYSADKGEALWQFEA  497 (668)
T ss_dssp             EEETTTCCEEEEEEC
T ss_pred             hhhhhcChhheEecC
Confidence            999999999888754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.19  E-value=0.00026  Score=59.07  Aligned_cols=154  Identities=11%  Similarity=-0.044  Sum_probs=98.9

Q ss_pred             CcceEEEEECCCCCEEEEEeCC--CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEE
Q 017421          169 RWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAG  245 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~  245 (372)
                      ..-...+.|++ +.++.+.+..  ..|+++|+.+++......+....               .--.+++.  ++.| +..
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------fgeGi~~~--~~~ly~lt   81 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------FGAGIVAW--RDRLIQLT   81 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---------------CEEEEEEE--TTEEEEEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---------------ceeEEEEe--CCEEEEEE
Confidence            34577899986 5556666664  48999999999986555432211               11223333  4444 444


Q ss_pred             eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCC---CCeeEEEe
Q 017421          246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSI---NPCNKYLF  314 (372)
Q Consensus       246 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~---~~v~~~~~  314 (372)
                      -.++.+.+||.++.+.+.++.... .-..++.   ++..|+.+..++.|.++|..+++        .+.   ..++.+.|
T Consensus        82 w~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTPRARFRYPG-EGWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             SSSSEEEEEETTTTEEEEEEECSS-CCCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             eeCCEEEEEECCcCcEEEEEeCCC-CceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence            567899999999999999987433 2245543   45556666678899999987543        111   23455565


Q ss_pred             ccCCCeEEEEeeeeEEEe-eceEEEeecccceEEEEEee
Q 017421          315 NPCNKYLIIYLILVISIY-SPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       315 s~~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~~~~~  352 (372)
                      . +|+..+..       | +..|.+-|..+|+.+..+..
T Consensus       158 ~-~G~lyanv-------w~s~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          158 V-NGELLANV-------WLTSRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             E-TTEEEEEE-------TTTTEEEEECTTTCBEEEEEEC
T ss_pred             e-CCEEEEEE-------CCCCeEEEEECCCCCEEEEEEC
Confidence            4 56544333       4 57788888888888776654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.17  E-value=0.00028  Score=61.43  Aligned_cols=170  Identities=12%  Similarity=0.132  Sum_probs=108.6

Q ss_pred             CCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeeccc------CCcceEEEEE---CCCCCEEEEEe-----
Q 017421          124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKS------LRWTVTDTSL---SPDQRHLVYAS-----  188 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~------~~~~v~~~~~---~~~~~~l~~~~-----  188 (372)
                      .-..-+++|++....|..++ ..++|..|+...+..... . ..+      ....+..+.|   .|+++++++..     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~-~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V-IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C-CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e-cCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            34455688988555555555 789999999976533322 1 221      1124689999   68887777644     


Q ss_pred             --------CCCeEEEEECC---CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-CeEEEEEC
Q 017421          189 --------MSPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDL  256 (372)
Q Consensus       189 --------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g~i~iwd~  256 (372)
                              .+..|..||+.   +++......+.....+  +.+.. +.-......++..++|+..++++.. +.|...+.
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~--~~~~~-g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE--FEKKA-GKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH--HHHHH-SSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc--ccccc-cccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                    25779999999   7766444332211100  00000 0001258899999999999999888 88887777


Q ss_pred             CCCeEEEEee------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          257 EANKLSLRIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       257 ~~~~~~~~~~------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      ... .+..+.      ......+.|+++ |+|+.|++....|.|..+|++
T Consensus       167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          167 DGK-TVSTFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             TSC-CEEEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECS
T ss_pred             CCC-EEeeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCC
Confidence            643 222221      112236789999 899888888779999999976

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.15  E-value=0.0022  Score=58.29  Aligned_cols=205  Identities=7%  Similarity=-0.112  Sum_probs=116.9

Q ss_pred             cCCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeE--EEEeeecccCCcceEEEEECCCCCEE-EEEeCCCeEEEE
Q 017421          121 DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIV  196 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw  196 (372)
                      ......+.+++|++.+..|... ...+.|+.+++.....  ..... .......+..+++.+.+..| ++-...+.|.+.
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~-~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE-EeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence            3345678899999866555544 4567888888865210  01111 11122357789998854444 444557889999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCeEE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNT  274 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~  274 (372)
                      +++......+...                .......|+++|.+..|+....  .+.|...++........+...-.....
T Consensus       187 ~~~g~~~~~l~~~----------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g  250 (400)
T 3p5b_L          187 DTKGVKRKTLFRE----------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  250 (400)
T ss_dssp             CTTTCSEEEEEEC----------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             eCCCCceEEEEeC----------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence            9876543322210                1125788999997666655442  367999998754433333333457789


Q ss_pred             EEEeCCCCCEEEEEe-CCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          275 VCFGDESGHLIYSGS-DDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |+++ +++..|+.+. ..+.|..+|+.-..        .......++++.  +..|+.+.     ...+.|..++..+|+
T Consensus       251 lavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd-----~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          251 ITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD-----IINEAIFSANRLTGS  322 (400)
T ss_dssp             EEEE-TTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEE-----SSSCSEEEEESSSCC
T ss_pred             EEEE-eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEec-----CCCCeEEEEEcCCCC
Confidence            9999 6666666554 56789998875211        112234455552  33333331     023556666666665


Q ss_pred             EEEEE
Q 017421          346 TFYSF  350 (372)
Q Consensus       346 ~~~~~  350 (372)
                      .+..+
T Consensus       323 ~~~~i  327 (400)
T 3p5b_L          323 DVNLL  327 (400)
T ss_dssp             CCEEE
T ss_pred             ceEEE
Confidence            44433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.10  E-value=0.0022  Score=57.12  Aligned_cols=178  Identities=8%  Similarity=0.033  Sum_probs=108.4

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCce
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTM  203 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~  203 (372)
                      ....|.+..++ .+|+.+.. ..|+..++........   .... ..+..++|++....|+.+. ..+.|..+++..+..
T Consensus        34 d~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~---~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLL---LNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             TSSCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEE---ECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcccccccC-ceeEeecc-cceEEEeCCCCeeEEe---ecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence            33455555563 44444433 5688888876533221   1222 2478999998666666554 578899999887653


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  282 (372)
                      ......                .......+++.+.+..| ++-...+.|.+.++........+.........++++|.++
T Consensus       108 ~~~~~~----------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g  171 (349)
T 3v64_C          108 EEVVST----------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG  171 (349)
T ss_dssp             EEEECS----------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT
T ss_pred             eEEEeC----------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC
Confidence            322110                01135678888755444 5555678899999875543333333445678999993355


Q ss_pred             CEEEEEeCC-CeEEEEeccc-----c-cCCCCCeeEEEeccCCCeEEEE
Q 017421          283 HLIYSGSDD-NLCKVNSVLL-----L-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       283 ~~l~s~~~d-g~i~vwd~~~-----~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .++++-... +.|..+++.-     + ...-.....++|+|++..|+.+
T Consensus       172 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a  220 (349)
T 3v64_C          172 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV  220 (349)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEE
T ss_pred             eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEE
Confidence            455554445 7888888751     1 1233457899999988777766

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.08  E-value=0.0032  Score=62.16  Aligned_cols=161  Identities=8%  Similarity=-0.054  Sum_probs=98.5

Q ss_pred             CCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeE--EEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEE
Q 017421          122 QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVD  197 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd  197 (372)
                      .....+.+++|++.+..| ++-...+.|+.+++.....  ..... .......+..|++.+.++.|+.+ ...+.|.+.+
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-i~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE-EecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence            345667889999855544 4555567888888875311  11111 12122346789999877655554 4578899999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CC-CeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-DCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      +.......+..  .              .......|+++|.+.+|+... .. +.|.+.++........+...-.....|
T Consensus       500 ldG~~~~~l~~--~--------------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GL  563 (791)
T 3m0c_C          500 TKGVKRKTLFR--E--------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  563 (791)
T ss_dssp             TTSSSEEEEEE--C--------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             CCCCeEEEEEe--C--------------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEE
Confidence            98654322221  0              112578999999866665544 33 789999987544433334344578899


Q ss_pred             EEeCCCCCEEEEE-eCCCeEEEEecc
Q 017421          276 CFGDESGHLIYSG-SDDNLCKVNSVL  300 (372)
Q Consensus       276 ~~sp~~~~~l~s~-~~dg~i~vwd~~  300 (372)
                      +++ +.+..|+.+ ...+.|...++.
T Consensus       564 avD-~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          564 TLD-LLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             EEE-TTTTEEEEEETTTTEEEEEETT
T ss_pred             EEe-cCCCeEEEEeCCCCcEEEEecC
Confidence            999 555555555 456778888875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.00025  Score=65.21  Aligned_cols=155  Identities=10%  Similarity=0.073  Sum_probs=97.0

Q ss_pred             CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-C----eEEEEEC
Q 017421          125 SRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P----IVHIVDV  198 (372)
Q Consensus       125 ~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~vwd~  198 (372)
                      .....++++| ++..|.++...+.|+.+|+..+... ...   ........++|++++++|+++... +    .+.+.+.
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            3567889998 4555655555588999999876432 221   123358899999999966666542 2    2333443


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEE
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVC  276 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~  276 (372)
                       .+.......+..               ......++++| ++.++++-..++.|..++...+....... ........++
T Consensus       213 -~g~~~~~~~l~~---------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia  276 (430)
T 3tc9_A          213 -ESGFKVITELTK---------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQ  276 (430)
T ss_dssp             -GGTSCSEEEEEE---------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEE
T ss_pred             -CCceeeeeeecc---------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEE
Confidence             232211111100               01356788999 67766776678899999998776422222 1224578999


Q ss_pred             EeCCCCCEEEEE-eCCCeEEEEecc
Q 017421          277 FGDESGHLIYSG-SDDNLCKVNSVL  300 (372)
Q Consensus       277 ~sp~~~~~l~s~-~~dg~i~vwd~~  300 (372)
                      |+ ++|++|+.+ ...+.|..++..
T Consensus       277 ~~-pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          277 FH-PSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             Ec-CCCCEEEEEECCCCEEEEEeCC
Confidence            99 999955554 467889998765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.06  E-value=0.00029  Score=68.53  Aligned_cols=117  Identities=13%  Similarity=0.126  Sum_probs=72.1

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEE
Q 017421          129 VSQFSA-DGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI  195 (372)
Q Consensus       129 ~~~~s~-~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v  195 (372)
                      .+++.+ +++.++.|+.+.           .+.+||+.++.-.........+.....++++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888888887543           5889999876422211111222222345778889999999885 458999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCe
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-----DCIYVYDLEANK  260 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~d-----g~i~iwd~~~~~  260 (372)
                      ||..+.+...........               .-.+++..+++++++.|+ .+     ..+.+||..+++
T Consensus       270 yd~~t~~W~~~~~~~~~R---------------~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVAR---------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSCC---------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCccc---------------cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            999877644332211110               112344456788887777 33     457888887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.06  E-value=0.0011  Score=65.62  Aligned_cols=155  Identities=10%  Similarity=0.079  Sum_probs=84.7

Q ss_pred             EEEEECCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeEEEEECC
Q 017421          128 YVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG  199 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~  199 (372)
                      ..++|+|||+.|+....+     ..|+++++.++..................+.|+||+++|+..+.   ...|+++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            467899999988877664     26888888765321111111122223567899999999887653   3468889988


Q ss_pred             CCceee-ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEE-eecCCCC--
Q 017421          200 SGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLR-ILAHTSD--  271 (372)
Q Consensus       200 ~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~~~~~--  271 (372)
                      ++.... ...+..             +.......+.|+..+.+++....+    ..|..+|+.++..... +..+...  
T Consensus       304 ~~~~~~~~~~l~~-------------~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~  370 (751)
T 2xe4_A          304 KGNAHNTLEIVRP-------------REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVF  370 (751)
T ss_dssp             SCTTCCCEEESSC-------------CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEE
T ss_pred             CCCCCceeEEeec-------------CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcE
Confidence            752111 011110             111244555555444444444333    3677788765311122 2334333  


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEE
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVN  297 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vw  297 (372)
                      +..+.+.  .+.++++...++..++|
T Consensus       371 l~~~~~~--~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          371 MESIAVR--SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred             EEEEEEE--CCEEEEEEEeCCEEEEE
Confidence            4445553  44566667777764444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.03  E-value=0.0031  Score=55.22  Aligned_cols=165  Identities=10%  Similarity=-0.004  Sum_probs=99.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCC----ceeeecceeec
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG----TMESLANVTEI  212 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~----~~~~~~~~~~~  212 (372)
                      +|+.+.. ..|+..++........   .. ....+.+++|++++..|+.+ ...+.|..+++.+.    .......  . 
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~---~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~-   74 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSL---IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R-   74 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEE---EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--S-
T ss_pred             EEEEECC-CeEEEEECCCcceEeh---hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--C-
Confidence            4444444 5689999887643322   11 22357899999876666555 44688999998762    1111110  0 


Q ss_pred             ccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-
Q 017421          213 HDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-  290 (372)
Q Consensus       213 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-  290 (372)
                                   .......+++++.+..| ++-...+.|.++++........+.........++++ |.+..|+.+.. 
T Consensus        75 -------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavd-p~~g~ly~~d~~  140 (316)
T 1ijq_A           75 -------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWG  140 (316)
T ss_dssp             -------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECS
T ss_pred             -------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeC-CCCCEEEEEccC
Confidence                         01145678888755444 555667899999987554433333344577899999 64444444443 


Q ss_pred             C-CeEEEEeccc-----c-cCCCCCeeEEEeccCCCeEEEE
Q 017421          291 D-NLCKVNSVLL-----L-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       291 d-g~i~vwd~~~-----~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      . +.|...++.-     + ...-.....++++|++..|+.+
T Consensus       141 ~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          141 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEE
Confidence            3 6788887651     1 1233467899999988777765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.03  E-value=0.00052  Score=65.63  Aligned_cols=191  Identities=13%  Similarity=0.071  Sum_probs=110.1

Q ss_pred             EEEECCCCCEEEEEeC--------------------C----CcEEEEeCCCCeEEEEeeecccC-------CcceEEEEE
Q 017421          129 VSQFSADGSLFVAGFQ--------------------A----SQIRIYDVERGWKIQKDILAKSL-------RWTVTDTSL  177 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~~~~~~~~~~~-------~~~v~~~~~  177 (372)
                      .++++|+..++.++..                    |    +.|..+|..+++.+.........       ..++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4577787777776653                    2    58999999999777654332110       11221 222


Q ss_pred             C-CCCC---EEEEEeCCCeEEEEECCCCceeeecceeecc---c------cc-----ceec-----------------cC
Q 017421          178 S-PDQR---HLVYASMSPIVHIVDVGSGTMESLANVTEIH---D------GL-----DFSA-----------------AD  222 (372)
Q Consensus       178 ~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~------~~-----~~~~-----------------~~  222 (372)
                      . .+|+   .++.++.+|.++++|..+|+.+.........   .      +.     .+.+                 ..
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4664   6788899999999999999875443322100   0      00     0111                 00


Q ss_pred             CCCccccEEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCeEEEEeecCC
Q 017421          223 DGGYSFGIFSLKFSTDGRELVAGS---------------------------------SDDCIYVYDLEANKLSLRILAHT  269 (372)
Q Consensus       223 ~~~h~~~i~~~~~sp~~~~l~s~s---------------------------------~dg~i~iwd~~~~~~~~~~~~~~  269 (372)
                      .+++.  -..++++|+..++++..                                 .+|.|..||+.+++.+.+.... 
T Consensus       409 ~Gg~~--w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-  485 (582)
T 1flg_A          409 LGGKN--WNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-  485 (582)
T ss_dssp             TCSSC--SSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-
T ss_pred             ccccC--CCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-
Confidence            01110  11356666655444332                                 2578999999999988776633 


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCe--eEEEeccCCCeEEEE
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPC--NKYLFNPCNKYLIIY  324 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v--~~~~~s~~g~~l~~~  324 (372)
                      .++..-... ..+.+++.++.|+.++.||.++.+     .....+  .-+.|..+|+..++.
T Consensus       486 ~~~~~g~~~-tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          486 LPLWAGVLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             SCCCSCCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCCcccceE-eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence            222222222 346678889999999999987544     111222  225667788754443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.99  E-value=0.00059  Score=65.11  Aligned_cols=192  Identities=15%  Similarity=0.053  Sum_probs=110.8

Q ss_pred             EEEECCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEeeeccc-------CCcceEEEEECCCCC---
Q 017421          129 VSQFSADGSLFVAGFQA----------------SQIRIYDVERGWKIQKDILAKS-------LRWTVTDTSLSPDQR---  182 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~---  182 (372)
                      .+++.++...+..+..+                +.|..+|..+++.+........       ...++. +...++|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            35677776677666532                3599999999977665433211       112221 22224674   


Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecceeecc---------ccc----------------ceeccCCCCccccEEEEEEcC
Q 017421          183 HLVYASMSPIVHIVDVGSGTMESLANVTEIH---------DGL----------------DFSAADDGGYSFGIFSLKFST  237 (372)
Q Consensus       183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~----------------~~~~~~~~~h~~~i~~~~~sp  237 (372)
                      .++.++.+|.++++|..+++.+.........         .+.                ...+...+++.  -..++++|
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~--w~~~a~dp  395 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHN--QGVDSYDP  395 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSC--SCBCEEET
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccC--CCCceECC
Confidence            5677888999999999999875443321100         000                00011111111  12467788


Q ss_pred             CCCEEEEEe-------------------------------------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          238 DGRELVAGS-------------------------------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       238 ~~~~l~s~s-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      +..++++..                                     .+|.|..||+.+++.+.++... ..+....+. .
T Consensus       396 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~-t  473 (571)
T 2ad6_A          396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLY-T  473 (571)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEE-E
T ss_pred             CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEE-E
Confidence            877776553                                     2478999999999988777632 233333333 3


Q ss_pred             CCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEe
Q 017421          281 SGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       281 ~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      .+..++.++.|+.|+.||.++.+       .......-+.+..+|+.++...
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            45677778999999999987543       1111112244567777666553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.98  E-value=0.0024  Score=56.02  Aligned_cols=200  Identities=9%  Similarity=-0.039  Sum_probs=115.4

Q ss_pred             CceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCc
Q 017421          125 SRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~  202 (372)
                      ..+.+++|++.+..| .+-...+.|..+++.......... ..+ -..+..+++.+.+..| ++-...+.|.++++....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-EEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-cCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            356788999855444 555566789999987652211111 111 1246788898755544 444557889999987644


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      ...+..  .              .......++++|.+..|+.+.  ..+.|...++............-.....++++ +
T Consensus       113 ~~~l~~--~--------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd-~  175 (318)
T 3sov_A          113 RKVLFW--Q--------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD-Y  175 (318)
T ss_dssp             CEEEEC--S--------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEE-T
T ss_pred             EEEEEe--C--------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEe-c
Confidence            322211  0              112578899999766665554  25789988886433222222333467899999 6


Q ss_pred             CCCEEEEE-eCCCeEEEEeccc-----c-cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          281 SGHLIYSG-SDDNLCKVNSVLL-----L-TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       281 ~~~~l~s~-~~dg~i~vwd~~~-----~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      ++..|+.+ +..+.|..+|+.-     + .........+++..+  .++.+.     ...+.|...+..+|+....+
T Consensus       176 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd-----~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          176 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTD-----WSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEE-----TTTTEEEEEETTTCCSCEEE
T ss_pred             cCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEe-----cCCCeEEEEECCCCCceEEE
Confidence            55555554 4567899998751     1 112334556666432  333221     02366677777666654433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.98  E-value=0.0022  Score=57.95  Aligned_cols=175  Identities=7%  Similarity=0.009  Sum_probs=105.2

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCceeee
Q 017421          128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       128 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~  206 (372)
                      .|.+..+ ..+|+.+.. ..|+.+++........   ... ...+..++|++.+..|+.+ ...+.|..+++..+.....
T Consensus        80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~---~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  153 (386)
T 3v65_B           80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLL---LNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  153 (386)
T ss_dssp             CEEECSS-CCEEEEECB-SCEEEECTTSCCCEEE---ECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred             eECCccc-cceeEeecC-ccceeeccCCCcEEEE---ecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence            3445555 344444443 5688888876532221   112 2247899999866666554 4578899999887653322


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  285 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l  285 (372)
                      ....                ......+++.+.+..| ++-...+.|.+.++........+.........+++.|..+.++
T Consensus       154 ~~~~----------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly  217 (386)
T 3v65_B          154 VSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY  217 (386)
T ss_dssp             ECSS----------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EeCC----------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEE
Confidence            2100                0134568888755444 5555677899998875543333333445678999993344444


Q ss_pred             EEEeCC-CeEEEEeccc-----c-cCCCCCeeEEEeccCCCeEEEE
Q 017421          286 YSGSDD-NLCKVNSVLL-----L-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       286 ~s~~~d-g~i~vwd~~~-----~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ++-... +.|..+++.-     + ...-.....++|+|++..|+.+
T Consensus       218 ~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          218 WTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEE
T ss_pred             EeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEE
Confidence            444344 6788888751     1 1223456889999887777766

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.97  E-value=0.00099  Score=63.57  Aligned_cols=202  Identities=12%  Similarity=0.089  Sum_probs=116.1

Q ss_pred             CEEEEEeC------CCcEEEEeCCCCeEEEEeeecccC----------------------------------Cc-ceEEE
Q 017421          137 SLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSL----------------------------------RW-TVTDT  175 (372)
Q Consensus       137 ~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~----------------------------------~~-~v~~~  175 (372)
                      ..+++++.      ++.|..+|..+++.+.+.......                                  .. ....+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            45555554      789999999999776654322110                                  00 00235


Q ss_pred             EECCCCCEEEEEeCC----------------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC
Q 017421          176 SLSPDQRHLVYASMS----------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG  239 (372)
Q Consensus       176 ~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  239 (372)
                      ++.++...++.++.+                +.|..+|.++++.+-...... +....+.     ....++. +...++|
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~-~d~~d~~-----~~~~p~l-~~~~~~G  313 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP-HDEWDFA-----GVNQMVL-TDQPVNG  313 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST-TCSSCCC-----CCCCCEE-EEEEETT
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC-Ccccccc-----cCCCCEE-EecccCC
Confidence            667766677766532                359999999998754333210 0000000     0112222 2333567


Q ss_pred             C---EEEEEeCCCeEEEEECCCCeEEEEeecCC-------------CCe--------------------------EEEEE
Q 017421          240 R---ELVAGSSDDCIYVYDLEANKLSLRILAHT-------------SDV--------------------------NTVCF  277 (372)
Q Consensus       240 ~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~  277 (372)
                      +   .++.++.+|.+.++|..+++.+.......             .++                          ..+++
T Consensus       314 ~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~  393 (571)
T 2ad6_A          314 KMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSY  393 (571)
T ss_dssp             EEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEE
T ss_pred             cEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceE
Confidence            4   57788889999999999998877654221             111                          23577


Q ss_pred             eCCCCCEEEEEe-------------------------------------CCCeEEEEeccccc-----CCCCCeeEEEec
Q 017421          278 GDESGHLIYSGS-------------------------------------DDNLCKVNSVLLLT-----RSINPCNKYLFN  315 (372)
Q Consensus       278 sp~~~~~l~s~~-------------------------------------~dg~i~vwd~~~~~-----~~~~~v~~~~~s  315 (372)
                      + |+..++++..                                     .+|.|..||+.+.+     .....+.+..+.
T Consensus       394 d-p~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~  472 (571)
T 2ad6_A          394 D-PESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY  472 (571)
T ss_dssp             E-TTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEE
T ss_pred             C-CCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEE
Confidence            7 5555665543                                     34678888876443     111222222222


Q ss_pred             cCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          316 PCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      ..+..+++++      .|+.++.+|..+|+++..+..
T Consensus       473 t~gg~v~~g~------~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          473 TKGGLVWYAT------LDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             ETTTEEEEEC------TTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCCEEEEEc------CCCeEEEEECCCCCEEEEEeC
Confidence            2344454443      578889999999988887753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.96  E-value=0.0079  Score=59.78  Aligned_cols=191  Identities=8%  Similarity=0.020  Sum_probs=122.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec-----ccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      ...|.++...++|++.+ |+.++-|..|+..++....-....     .-....|.++...++++.|..|+.++-|.+||.
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            45699999999988554 666667999998776432211110     011246889998888885666777777999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec------CCCCe
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA------HTSDV  272 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~v  272 (372)
                      .+++........   .         ......|.++...++|++.+.. . +.+.+||..+++.......      ....|
T Consensus       435 ~~~~~~~~~~~~---~---------~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i  500 (795)
T 4a2l_A          435 NSGQVENFNQRN---S---------QLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQI  500 (795)
T ss_dssp             TTCCEEEECTTT---S---------CCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCE
T ss_pred             CCCcEEEeecCC---C---------CcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceE
Confidence            887653322100   0         0123479999999888866554 4 4588899987764322211      23578


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----------CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          273 NTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----------RSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                      .++... ++|++.+.. . +-|..||..+..           .....|.++...++|++.++... .+..||
T Consensus       501 ~~i~~d-~~g~lWigt-~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d  568 (795)
T 4a2l_A          501 TTLFRD-SHKRLWIGG-E-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFN  568 (795)
T ss_dssp             EEEEEC-TTCCEEEEE-S-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEE
T ss_pred             EEEEEC-CCCCEEEEe-C-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeEC
Confidence            899887 788766654 3 447778764211           12346888998899886665543 455555

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.93  E-value=0.00091  Score=65.15  Aligned_cols=169  Identities=14%  Similarity=0.137  Sum_probs=105.3

Q ss_pred             EEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEEEeeecccCC-------cceEEEEECCCCC
Q 017421          129 VSQFSADGSLFVAGFQAS-------------------QIRIYDVERGWKIQKDILAKSLR-------WTVTDTSLSPDQR  182 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~  182 (372)
                      .++++|+..+++.+..++                   .|..+|..+++.+....... |.       .++....+..+++
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~-~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP-GDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC-CccccccCCCCcEEEEeccCCc
Confidence            578889888888887665                   39999999997766544321 21       2222223333565


Q ss_pred             ---EEEEEeCCCeEEEEECCCCceeeecceeecc--------cc-------c-------ceeccCCCCccccEEEEEEcC
Q 017421          183 ---HLVYASMSPIVHIVDVGSGTMESLANVTEIH--------DG-------L-------DFSAADDGGYSFGIFSLKFST  237 (372)
Q Consensus       183 ---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------~~-------~-------~~~~~~~~~h~~~i~~~~~sp  237 (372)
                         .++.++.+|.++++|..+|+.+.........        .+       .       ...+...+++.  -..++++|
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~--w~~~a~dp  390 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN--WHSMSFNP  390 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC--SSCCEEET
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC--CCcceECC
Confidence               6888899999999999999875332211100        00       0       00000011111  11267777


Q ss_pred             CCCEEEEEe------------------------------------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC
Q 017421          238 DGRELVAGS------------------------------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  281 (372)
Q Consensus       238 ~~~~l~s~s------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  281 (372)
                      +...++...                                    .+|.|..||+.+++.+.+...+ .+.....+. ..
T Consensus       391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~-t~  468 (668)
T 1kv9_A          391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLS-TA  468 (668)
T ss_dssp             TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEE-ET
T ss_pred             CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeE-eC
Confidence            766655421                                    2378999999999988777643 333334444 56


Q ss_pred             CCEEEEEeCCCeEEEEecccc
Q 017421          282 GHLIYSGSDDNLCKVNSVLLL  302 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~~  302 (372)
                      +.++++++.|+.|+.||.++.
T Consensus       469 gg~vf~g~~dg~l~a~d~~tG  489 (668)
T 1kv9_A          469 GNLVFQGTAAGQMHAYSADKG  489 (668)
T ss_dssp             TTEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEECCcccchhhhhhcC
Confidence            778888999999999998754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.93  E-value=0.002  Score=59.11  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=91.7

Q ss_pred             CceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----eEEEEE
Q 017421          125 SRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVD  197 (372)
Q Consensus       125 ~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd  197 (372)
                      ....+++|+|+  +..|..+...+.|+.+++.++..... .   .....+..++|+++++ |+.+...+     .+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~---~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-T---TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-C---CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-e---cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence            35678999995  44455544448899999977743322 1   2223588999999999 44444321     132233


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeEE
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNT  274 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~  274 (372)
                      ...+... .....               .......++++| +|.++++-..++.|+.+|..++.....+.  +.......
T Consensus       214 ~~~~~~~-~~~~~---------------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          214 RASGFTE-RLSLC---------------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             GGGTTCC-EEEEE---------------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred             CCCCeec-ccccc---------------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCccc
Confidence            2211110 00000               011456688899 67766666677899999998776522322  11223357


Q ss_pred             EEEeCCCCCEEEEE-eCCCeEEEEecc
Q 017421          275 VCFGDESGHLIYSG-SDDNLCKVNSVL  300 (372)
Q Consensus       275 ~~~sp~~~~~l~s~-~~dg~i~vwd~~  300 (372)
                      ++|+ ++++.|+.+ ...+.|+.+++.
T Consensus       278 ia~d-pdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          278 IVWH-PTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEC-TTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEe-CCCCEEEEEeCCCCEEEEEeCC
Confidence            9999 888855555 456889998854

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.89  E-value=0.0026  Score=58.37  Aligned_cols=160  Identities=14%  Similarity=0.222  Sum_probs=92.2

Q ss_pred             CCCCceEEEEECCCCCEEEEEeCC---C-cEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421          122 QTTSRAYVSQFSADGSLFVAGFQA---S-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  196 (372)
Q Consensus       122 ~~~~~v~~~~~s~~~~~l~~~~~d---g-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw  196 (372)
                      .......+++++++|+++++....   . .+..++...+.......  .. ......++++| ++.++++-..++.|+.+
T Consensus       179 ~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~  255 (433)
T 4hw6_A          179 TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CN-ARGAKTCAVHPQNGKIYYTRYHHAMISSY  255 (433)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EE-CSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred             cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cc-cCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence            345568999999999955544321   1 13333332221100111  11 12366789999 66655555567889999


Q ss_pred             ECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeE--EEEeecC--
Q 017421          197 DVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE--ANKL--SLRILAH--  268 (372)
Q Consensus       197 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~--~~~~--~~~~~~~--  268 (372)
                      |..++.. .......               .......++|+|+++.| ++-...+.|..++..  ++..  ...+.+.  
T Consensus       256 d~~~g~~~~~~~~~~---------------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g  320 (433)
T 4hw6_A          256 DPATGTLTEEEVMMD---------------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHS  320 (433)
T ss_dssp             CTTTCCEEEEEEECS---------------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTT
T ss_pred             ECCCCeEEEEEeccC---------------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCC
Confidence            9987764 2111100               01123469999999855 454556889998865  2321  1222221  


Q ss_pred             -------------CCCeEEEEE---------eCCCCCEEEEEeCCCeEEEEecc
Q 017421          269 -------------TSDVNTVCF---------GDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       269 -------------~~~v~~~~~---------sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                                   -.....+++         . ++|.++++-...+.|+.++..
T Consensus       321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECTT
T ss_pred             CCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECCC
Confidence                         124667888         5 777777776677889888853

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.86  E-value=0.009  Score=52.49  Aligned_cols=192  Identities=11%  Similarity=0.116  Sum_probs=114.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC----CC---EEEEEeC---CCeEEEEECC--CCc
Q 017421          135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QR---HLVYASM---SPIVHIVDVG--SGT  202 (372)
Q Consensus       135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~vwd~~--~~~  202 (372)
                      ...+++.....+-+.|||+ .++.+....   .  ..+..+..-|+    ++   ++++...   +++|.+|++.  ++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC---C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc---C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            3456666667788999999 666665521   1  24555655552    22   2333333   4789999773  443


Q ss_pred             eeeecce--eecccccceeccCCCCccccEEEEEE--cCC-CC-EEEEEeCCCeEEEEECC-------CCeEEEEeecCC
Q 017421          203 MESLANV--TEIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE-------ANKLSLRILAHT  269 (372)
Q Consensus       203 ~~~~~~~--~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~-~~-~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~  269 (372)
                      .......  ... .           -...+..+++  +|. ++ ++++...+|.+..|++.       +.+.++++.. .
T Consensus       113 l~~i~~~~~pv~-t-----------~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-g  179 (355)
T 3amr_A          113 LQSMTDPDHPIA-T-----------AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-N  179 (355)
T ss_dssp             EEECSCTTSCEE-C-----------CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-S
T ss_pred             eeeccccccCcC-C-----------CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-C
Confidence            2222110  000 0           0024556666  774 44 57777888999999883       3356667664 4


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cc--------cCCCCCeeEEEe--ccCCC-eEEEEeeeeEEEee
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LL--------TRSINPCNKYLF--NPCNK-YLIIYLILVISIYS  333 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~--------~~~~~~v~~~~~--s~~g~-~l~~~~~~~~~~~d  333 (372)
                      +.+..+... +....|+.+-++.-|..++.+     +.        ......+..|++  .++|+ +|++++.+     +
T Consensus       180 sq~EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG-----~  253 (355)
T 3amr_A          180 SQTEGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG-----N  253 (355)
T ss_dssp             SCEEEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG-----G
T ss_pred             CCcceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC-----C
Confidence            578888888 777788888888777666644     11        112246788887  45555 66666422     4


Q ss_pred             ceEEEeecc-cceEEEEEe
Q 017421          334 PNILLDNYF-LLRTFYSFM  351 (372)
Q Consensus       334 ~~i~lw~~~-~~~~~~~~~  351 (372)
                      .+..+||.. +.+.+.+|.
T Consensus       254 ~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          254 SSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             TEEEEEESSTTCCEEEEEE
T ss_pred             CEEEEEECCCCCcEEEEEE
Confidence            567777775 555555553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.83  E-value=0.0022  Score=61.38  Aligned_cols=190  Identities=13%  Similarity=0.058  Sum_probs=107.9

Q ss_pred             EEEECCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEeeecccC-------CcceEEEEEC-CCC---
Q 017421          129 VSQFSADGSLFVAGFQA----------------SQIRIYDVERGWKIQKDILAKSL-------RWTVTDTSLS-PDQ---  181 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~-~~~---  181 (372)
                      .+++.++..++..+..+                +.|..+|..+++.+.........       ..++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            35677777777777654                37999999999776654332211       11221 2222 467   


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeec---------ccc----------------cceeccCCCCccccEEEEEEc
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEI---------HDG----------------LDFSAADDGGYSFGIFSLKFS  236 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~----------------~~~~~~~~~~h~~~i~~~~~s  236 (372)
                      ..++.++.+|.++++|.++|+.+........         ..+                ....|...+++.  -..++++
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~--w~~~a~d  401 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHN--QGHDSYD  401 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSC--SCBCEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccC--CCCccCC
Confidence            4677788999999999999987544332110         000                000111111111  1235566


Q ss_pred             CCCCEEEEEe---------------------------------------CCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421          237 TDGRELVAGS---------------------------------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCF  277 (372)
Q Consensus       237 p~~~~l~s~s---------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  277 (372)
                      |+..++++..                                       ..|.|..||+.+++.+.+... ..++..-..
T Consensus       402 p~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~  480 (599)
T 1w6s_A          402 PKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTM  480 (599)
T ss_dssp             TTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCE
T ss_pred             CCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcce
Confidence            6655554321                                       347899999999988777652 222221112


Q ss_pred             eCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEE
Q 017421          278 GDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLII  323 (372)
Q Consensus       278 sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~  323 (372)
                      . ..+.+++.++.|+.|+.||.++.+       .......-+.+..+|+..++
T Consensus       481 ~-tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~  532 (599)
T 1w6s_A          481 A-TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (599)
T ss_dssp             E-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             E-ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEE
Confidence            2 356677789999999999988543       11111123556677764443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.82  E-value=0.017  Score=57.31  Aligned_cols=201  Identities=10%  Similarity=-0.028  Sum_probs=125.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec-ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      ...|.++...++++.|-+|+.++-|.+|+..++....-.... ......|.++...+++++.+.. .+ -+.+||..+++
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCe
Confidence            356899999989985566777677999998876432211100 0123468999998888766544 44 58889988776


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-------cCCCCeEEE
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTV  275 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~  275 (372)
                      ........ ..         ..-....|.++...++|++.+...  +.+..||..+++.  .+.       .....|.++
T Consensus       483 ~~~~~~~~-~~---------~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i  548 (795)
T 4a2l_A          483 FTTIEKEK-DG---------TPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCI  548 (795)
T ss_dssp             EEECCBCT-TC---------CBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEE
T ss_pred             EEEccccc-cc---------cccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEE
Confidence            43322110 00         001224789999999998666544  4588899887765  222       123578899


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc--------C-CCCCeeEEEeccCCCeEEEEeeeeEEEee---ceEEEeeccc
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT--------R-SINPCNKYLFNPCNKYLIIYLILVISIYS---PNILLDNYFL  343 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d---~~i~lw~~~~  343 (372)
                      ... ++|.+.+.. .. -|..||..+..        + ....|.++...++|++.+++. ..+..+|   ..++.++...
T Consensus       549 ~~d-~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~-~Gl~~~~~~~~~~~~~~~~d  624 (795)
T 4a2l_A          549 YEA-SNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN-RGISCFNPETEKFRNFTESD  624 (795)
T ss_dssp             EEC-TTSCEEEEE-SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEECGGG
T ss_pred             EEC-CCCCEEEEe-CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC-CceEEEcCCCCcEEEcCCcC
Confidence            887 788766544 33 47778865211        1 134588898899888766653 4445555   3455555444


Q ss_pred             c
Q 017421          344 L  344 (372)
Q Consensus       344 ~  344 (372)
                      |
T Consensus       625 G  625 (795)
T 4a2l_A          625 G  625 (795)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.76  E-value=0.0033  Score=60.18  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             CCCcEEEEeCCCCeEEEEeeecccCC----------------------------------cce-EEEEECCCCCEEEEEe
Q 017421          144 QASQIRIYDVERGWKIQKDILAKSLR----------------------------------WTV-TDTSLSPDQRHLVYAS  188 (372)
Q Consensus       144 ~dg~i~vwd~~~~~~~~~~~~~~~~~----------------------------------~~v-~~~~~~~~~~~l~~~~  188 (372)
                      .++.|..+|..+++.+.+........                                  ..+ ..+++.++...++.++
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            37899999999997766543321110                                  001 1356667777788776


Q ss_pred             CC----------------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEc-CCC---CEEEEEeCC
Q 017421          189 MS----------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDG---RELVAGSSD  248 (372)
Q Consensus       189 ~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-p~~---~~l~s~s~d  248 (372)
                      .+                +.|..+|.++|+.+-...... +....+.     ....++. +... .+|   ..++.++.+
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~-~d~wd~d-----~~~~p~l-~d~~~~~G~~~~~v~~~~~~  332 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP-HDEWDYA-----GVNVMML-SEQKDKDGKARKLLTHPDRN  332 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST-TCSSCCC-----CCCCCEE-EEEECTTSCEEEEEEEECTT
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC-Ccccccc-----CCCccEE-EeccccCCcEEEEEEEECCC
Confidence            65                379999999998754433211 1111110     0111222 2332 567   467778899


Q ss_pred             CeEEEEECCCCeEEEEee
Q 017421          249 DCIYVYDLEANKLSLRIL  266 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~  266 (372)
                      |.+.++|.++++.+....
T Consensus       333 G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          333 GIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEECCCCCEeeccc
Confidence            999999999999876654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.76  E-value=0.011  Score=53.73  Aligned_cols=166  Identities=10%  Similarity=0.000  Sum_probs=101.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCc----eeeecceee
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT----MESLANVTE  211 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~----~~~~~~~~~  211 (372)
                      .+|+.+.. ..|+..++........   . .....+..++|++.+..|+.+. ..+.|+.+++....    ......   
T Consensus        84 ~~ll~~~~-~~I~~i~l~~~~~~~~---~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---  155 (400)
T 3p5b_L           84 AYLFFTNR-HEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---  155 (400)
T ss_dssp             CEEEEEET-TEEEEECTTSCSCEEE---E-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---
T ss_pred             ceeEEecc-ceeEEEccCCcceeEe---c-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---
Confidence            34544443 6788888876533221   1 2223588999999766666554 46789889887532    111110   


Q ss_pred             cccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-
Q 017421          212 IHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-  289 (372)
Q Consensus       212 ~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-  289 (372)
                                   ........+++.+. ++++++-...+.|.+.++........+.........+++. |.+..|+... 
T Consensus       156 -------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd-p~~g~ly~td~  221 (400)
T 3p5b_L          156 -------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDW  221 (400)
T ss_dssp             -------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEE-TTTTEEEEEEC
T ss_pred             -------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEe-cccCeEEEEeC
Confidence                         01125678899884 4455555667899999998665444444444568899999 5444554444 


Q ss_pred             C-CCeEEEEeccc-----c-cCCCCCeeEEEeccCCCeEEEE
Q 017421          290 D-DNLCKVNSVLL-----L-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       290 ~-dg~i~vwd~~~-----~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      . .+.|...++.-     + ...-.....++++|++..|+.+
T Consensus       222 ~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          222 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             SSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence            2 36788888751     1 1233567899999888877766

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=0.00067  Score=62.34  Aligned_cols=136  Identities=10%  Similarity=0.122  Sum_probs=86.4

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C
Q 017421          171 TVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D  248 (372)
Q Consensus       171 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d  248 (372)
                      ....++++| ++..|+++...+.|+.+|+.++.......                 .......++|+++|++|+.+.. +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----------------~~~~P~~ia~d~~G~~lyvad~~~  200 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----------------GLSKVRTICWTHEADSMIITNDQN  200 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----------------CCSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----------------CCCCcceEEEeCCCCEEEEEeCCC
Confidence            467899998 45566666555889999998776533322                 1125789999999996655543 2


Q ss_pred             C----eEEEEECCCCeE-EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEecc
Q 017421          249 D----CIYVYDLEANKL-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNP  316 (372)
Q Consensus       249 g----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~  316 (372)
                      +    .+.+++...... ...+. .......++++|.++.++++-..++.|..++.....       ........++|+|
T Consensus       201 ~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p  279 (430)
T 3tc9_A          201 NNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP  279 (430)
T ss_dssp             CTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT
T ss_pred             CcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC
Confidence            2    344444332111 12222 233457788993377777776678899999986221       1224568899999


Q ss_pred             CCCeEEEE
Q 017421          317 CNKYLIIY  324 (372)
Q Consensus       317 ~g~~l~~~  324 (372)
                      +|++|+.+
T Consensus       280 dG~~lyv~  287 (430)
T 3tc9_A          280 SGNYAYIV  287 (430)
T ss_dssp             TSSEEEEE
T ss_pred             CCCEEEEE
Confidence            99977666

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.73  E-value=0.014  Score=57.84  Aligned_cols=201  Identities=11%  Similarity=0.058  Sum_probs=123.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...|.++...+++++.+ |+.++-|..++..++.... ..........|.++...+++++.+ |+. +-|..||..+++.
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSC
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeE
Confidence            46789999988888655 6665678899987764322 111111234688998888876555 455 5688999887654


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec----CCCCeEEEEEeC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----HTSDVNTVCFGD  279 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp  279 (372)
                      ........           .......|.++...++|++.+. +.++.+..||..+++.. .+..    ....|.++... 
T Consensus       482 ~~~~~~~~-----------~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d-  547 (781)
T 3v9f_A          482 IHHYDTSN-----------SQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRS-  547 (781)
T ss_dssp             CEEECTTT-----------SSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEEC-
T ss_pred             EecccCcc-----------cccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEEC-
Confidence            32211100           0011247899999998886554 44344777998776543 3321    23468888887 


Q ss_pred             CCCCEEEEEeCCCeEEEEeccccc--------C-CCCCeeEEEeccCCCeEEEEeeeeEEEee---ceEEEeecccc
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLLLT--------R-SINPCNKYLFNPCNKYLIIYLILVISIYS---PNILLDNYFLL  344 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~~~--------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d---~~i~lw~~~~~  344 (372)
                      ++|.+.+.. .+|.|..||..+..        + ....|.++...++|.+.+++. ..+..++   ..++.++...|
T Consensus       548 ~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~~~~~dG  622 (781)
T 3v9f_A          548 SKGQMWLAT-GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYTYDHSNN  622 (781)
T ss_dssp             TTSCEEEEE-TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEEECGGGT
T ss_pred             CCCCEEEEE-CCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC-CceEEEECCCCceEEecccCC
Confidence            778765544 46654788765321        1 123578888888888766554 3444455   45666665554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.73  E-value=0.0035  Score=59.85  Aligned_cols=87  Identities=20%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             EEEECCCCCEEEEEeC--------------------C----CeEEEEECCCCceeeecceeecccccceeccCCCCcccc
Q 017421          174 DTSLSPDQRHLVYASM--------------------S----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG  229 (372)
Q Consensus       174 ~~~~~~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  229 (372)
                      .++++|+..+++.+..                    |    +.|..+|..+|+.+-..... .+....+..     ...+
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~-~~d~wd~~~-----~~~p  323 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT-PNDAWDFSG-----NNEL  323 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS-TTCCSCCCC-----CCCC
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC-CCCcccccC-----CCCc
Confidence            3567777777777663                    2    57999999999875443321 111111110     1112


Q ss_pred             EEEEEEc-CCCC---EEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421          230 IFSLKFS-TDGR---ELVAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       230 i~~~~~s-p~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      +. +... .+|+   .++.++.+|.++++|.++++.+.....
T Consensus       324 ~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          324 VL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             EE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            22 2222 4674   678899999999999999998776543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.70  E-value=0.0097  Score=52.30  Aligned_cols=183  Identities=13%  Similarity=0.046  Sum_probs=101.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE-EECCCCc
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI-VDVGSGT  202 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~  202 (372)
                      +..+..+.+.++++.++++. +|.|.. ..+.+.......  ......+..+.+.|++.+++++. +|.+.. .|- .+.
T Consensus       121 ~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~  194 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQT  194 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCS
T ss_pred             CCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCC
Confidence            45578888877777666654 454422 223343322221  23334688999999988777664 444433 332 122


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-c---CCCCeEEEEEe
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-A---HTSDVNTVCFG  278 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~---~~~~v~~~~~s  278 (372)
                      .-....  .             +....+..+.+.++++.++. +.+|.+.+.+...++.-..+. .   +...+.++.+.
T Consensus       195 tW~~~~--~-------------~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          195 AWEPHN--R-------------TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             SCEEEE--C-------------CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             ceeECC--C-------------CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            111110  0             12236888999999876654 457887776433233222222 1   22358899998


Q ss_pred             CCCCCEEEEEeCCCeEEEEecc---c---cc---CCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          279 DESGHLIYSGSDDNLCKVNSVL---L---LT---RSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~---~---~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                       +++.+++++ .++.|. +..+   +   ..   .....+..+.|.++++.++++.++.+..
T Consensus       259 -~~~~~~~~g-~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~  317 (327)
T 2xbg_A          259 -TPNEVWLAG-GAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLR  317 (327)
T ss_dssp             -SSSCEEEEE-STTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEE
T ss_pred             -CCCEEEEEe-CCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEE
Confidence             677766665 467663 2222   1   11   2245678899987777777775444433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.01  Score=58.80  Aligned_cols=190  Identities=9%  Similarity=0.036  Sum_probs=116.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...|.++...++|++. +|+.++-|..|+..++....-..........|.++...+++.+.+ |+.++-|..+|..+++.
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence            3569999999888855 455555688898765422111000011234688998888877555 66667788999887764


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-----CCCeEEEEEe
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFG  278 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~s  278 (372)
                      ......  .            .....|.++...++|++.+ |+. +.|..||..+++........     ...|.++...
T Consensus       440 ~~~~~~--~------------~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  503 (781)
T 3v9f_A          440 QIIELE--K------------NELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD  503 (781)
T ss_dssp             EECCST--T------------TCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred             EEeccC--C------------CCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence            322210  0            1224789999888886544 454 56889998876543322222     3578899887


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccccc---------CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLLLT---------RSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                       ++|.+.+. +.++-|..||.....         -....|.++...++|.+.++...+.+..||
T Consensus       504 -~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d  565 (781)
T 3v9f_A          504 -SEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPS  565 (781)
T ss_dssp             -TTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESC
T ss_pred             -CCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEEC
Confidence             77876554 443346777765211         123468889888888876655433325555

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.66  E-value=0.0044  Score=57.47  Aligned_cols=159  Identities=11%  Similarity=0.066  Sum_probs=95.7

Q ss_pred             CceEEEEECCC-CC-EEEEEeCCCcEEEEeCCCCeEEEEeeec-ccCCcceEEEEE-------CCCCCEEEEEeCCC---
Q 017421          125 SRAYVSQFSAD-GS-LFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSL-------SPDQRHLVYASMSP---  191 (372)
Q Consensus       125 ~~v~~~~~s~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~-------~~~~~~l~~~~~dg---  191 (372)
                      .....|+|+|. +. ++++....+.|++.|+.++.... +... ...-..+..++|       +++++.|+++...+   
T Consensus       139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            35788999993 44 44444444678999988774332 2211 112235889999       99999777776654   


Q ss_pred             ----eEEEEECCC-Cceee-e--cceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECC-----
Q 017421          192 ----IVHIVDVGS-GTMES-L--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE-----  257 (372)
Q Consensus       192 ----~i~vwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~-----  257 (372)
                          .|.+.+... +.... .  ..+...               .....++++|+ +.++++-..++.|..+|+.     
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~---------------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~  282 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAY---------------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT  282 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEE---------------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH
T ss_pred             ccCceEEEEecCCCCceeecccceeeccC---------------CCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc
Confidence                255665433 22210 0  011000               13456788995 5556666678889999987     


Q ss_pred             --CCeE-----------EEE-ee-cCCCCeEEEEEeCCCCCEEEEE-eCCCeEEEEecc
Q 017421          258 --ANKL-----------SLR-IL-AHTSDVNTVCFGDESGHLIYSG-SDDNLCKVNSVL  300 (372)
Q Consensus       258 --~~~~-----------~~~-~~-~~~~~v~~~~~sp~~~~~l~s~-~~dg~i~vwd~~  300 (372)
                        ++..           ... +. +.....+.++|+ |+|+.|+.+ .....|+.++..
T Consensus       283 ~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccCceeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecC
Confidence              4543           112 11 223456899999 999965555 466788886653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.63  E-value=0.022  Score=47.98  Aligned_cols=143  Identities=13%  Similarity=0.179  Sum_probs=91.0

Q ss_pred             cccCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE
Q 017421          165 AKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  243 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~  243 (372)
                      ..+....+..++|+|+++.| ++...++.|...|.. ++......+..               ....-.|++.+++.+++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---------------~~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---------------VKDLETIEYIGDNQFVI   85 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---------------CSSEEEEEECSTTEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---------------CCChHHeEEeCCCEEEE
Confidence            44555579999999976655 456778899999998 66544332211               13677888889888767


Q ss_pred             EEeCCCeEEEEECCCCeE---EEEee------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------c------
Q 017421          244 AGSSDDCIYVYDLEANKL---SLRIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------L------  302 (372)
Q Consensus       244 s~s~dg~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~------  302 (372)
                      +.-.++.+.++++.....   +....      ........++|+ +.++.|+++.......+|.++-      +      
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence            665678899998865432   22221      123456899999 7776666665544444544431      0      


Q ss_pred             ----cCCCCCeeEEEeccCCCeEEEE
Q 017421          303 ----TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       303 ----~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                          ......+.+++++|....+.+-
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliL  190 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVL  190 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEE
T ss_pred             hhccccccCCceeEEEcCCCCeEEEE
Confidence                0123356899999986555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.61  E-value=0.0061  Score=59.18  Aligned_cols=197  Identities=14%  Similarity=0.039  Sum_probs=110.7

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CC-----CeEEEEEC
Q 017421          126 RAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS-----PIVHIVDV  198 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~vwd~  198 (372)
                      ...++++.++++++++|+. +..+.+||..++.-... ......+. -.++...++++.++.|+ .+     ..+.+||.
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            3445788899999999884 45899999987643221 11111222 23556667899999988 34     56999999


Q ss_pred             CCCceeeec-----ceeeccc-------cc--c-------------------eeccCCC------Cc---------cccE
Q 017421          199 GSGTMESLA-----NVTEIHD-------GL--D-------------------FSAADDG------GY---------SFGI  230 (372)
Q Consensus       199 ~~~~~~~~~-----~~~~~~~-------~~--~-------------------~~~~~~~------~h---------~~~i  230 (372)
                      .+++...+.     .......       +.  .                   +.+....      .+         ...-
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            887654321     1110000       00  0                   0000000      00         0012


Q ss_pred             EEEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCeEEEEe--ecCCCC-eEEEEEeCCCCCEEEEEeCC----
Q 017421          231 FSLKFST-DGRELVAGSSDD-----------CIYVYDLEANKLSLRI--LAHTSD-VNTVCFGDESGHLIYSGSDD----  291 (372)
Q Consensus       231 ~~~~~sp-~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~--~~~~~~-v~~~~~sp~~~~~l~s~~~d----  291 (372)
                      .++.|.. ++++++.|+.++           .|.+||..+.+-....  ..+... -.+++.. +++++++.|+.+    
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l-~~g~i~v~GG~~~~~~  480 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVL-PDGSTFITGGQRRGIP  480 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEEC-TTSCEEEECCBSBCCT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEEC-CCCCEEEECCcccCcC
Confidence            2333433 677777877432           6888888876543332  112222 2344555 799999999854    


Q ss_pred             -------CeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEe
Q 017421          292 -------NLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       292 -------g~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                             ..+.+||..+..        ..........+.|+|+.++.+.
T Consensus       481 ~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          481 FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence                   468999986322        1112223455678999988885

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.60  E-value=0.00038  Score=68.08  Aligned_cols=202  Identities=8%  Similarity=-0.085  Sum_probs=110.5

Q ss_pred             CCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCC---eEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEEC
Q 017421          124 TSRAYVSQFSADGSLFVAG-FQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDV  198 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~  198 (372)
                      ...+.+++|++.+..|... ...+.|+.+++...   .....  ........+..+++.+.+..|+ +-...+.|.++++
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence            3456788999876666554 44578999998751   11111  1111112356788886554444 4345678999998


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CC-CeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-DCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      .......+...                .......|+++|.+.+|+.+. .. +.|.++++........+...-.....|+
T Consensus       483 dg~~~~~l~~~----------------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla  546 (699)
T 1n7d_A          483 KGVKRKTLFRE----------------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  546 (699)
T ss_dssp             SSCCEEEECCC----------------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred             CCCceEEEEeC----------------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence            76543322211                011356788898655554433 22 6788887764332222222234567899


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEecccc-----c---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSVLLL-----T---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~~~~-----~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                      |+|..++++++-...+.|.++++...     .   ........+++..+  .|+.+.-     ..+.|..++..+++.+.
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~-----~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDI-----INEAIFSANRLTGSDVN  619 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECS-----TTTCEEEEETTTEEEEE
T ss_pred             EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeC-----CCCeEEEEEccCCCceE
Confidence            99334555555556788999988521     1   11122344555433  3333310     13567777777776655


Q ss_pred             EE
Q 017421          349 SF  350 (372)
Q Consensus       349 ~~  350 (372)
                      .+
T Consensus       620 ~i  621 (699)
T 1n7d_A          620 LL  621 (699)
T ss_dssp             CC
T ss_pred             Ee
Confidence            44

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.58  E-value=0.019  Score=50.91  Aligned_cols=184  Identities=10%  Similarity=0.038  Sum_probs=105.4

Q ss_pred             ceEEEEECCCCCEEEEE------------eCCCcEEEEeCCCCe-EEEEeeecc----cCCcceEEEEECC--CCC-EEE
Q 017421          126 RAYVSQFSADGSLFVAG------------FQASQIRIYDVERGW-KIQKDILAK----SLRWTVTDTSLSP--DQR-HLV  185 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~------------~~dg~i~vwd~~~~~-~~~~~~~~~----~~~~~v~~~~~~~--~~~-~l~  185 (372)
                      ..-.+.+.|+|..++++            ..+|.|.++|+.+.. .........    ........+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45566778887655554            268999999987421 122221111    1223577777765  454 344


Q ss_pred             EE-eC--CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---------------
Q 017421          186 YA-SM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------------  247 (372)
Q Consensus       186 ~~-~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---------------  247 (372)
                      ++ ..  +..|.+|++..+.....  ......+         ..-...+.+.+.++|++.++...               
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~--~~~~~~g---------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~  199 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLL--HLKTIRH---------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG  199 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEE--EEEEECC---------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEE--EEecccc---------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence            44 32  45777877765422111  1111111         11236889999999987777541               


Q ss_pred             --CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccc---cc-----CCCCCeeEEEecc
Q 017421          248 --DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLL---LT-----RSINPCNKYLFNP  316 (372)
Q Consensus       248 --dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~---~~-----~~~~~v~~~~~s~  316 (372)
                        .|.|..+|.  ++. ..+...-...+.++|+ ||++.|+.+. ..+.|..|++..   +.     ......-.+++.+
T Consensus       200 ~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~  275 (355)
T 3sre_A          200 LAWSFVTYYSP--NDV-RVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  275 (355)
T ss_dssp             CCCEEEEEECT--TCC-EEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             CCccEEEEEEC--CeE-EEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeC
Confidence              244555554  332 2222233467899999 9998777665 568899999852   11     1234567788888


Q ss_pred             -CCCeEEEE
Q 017421          317 -CNKYLIIY  324 (372)
Q Consensus       317 -~g~~l~~~  324 (372)
                       +|++.+++
T Consensus       276 e~G~lwva~  284 (355)
T 3sre_A          276 VTGDLWVGC  284 (355)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCcEEEEe
Confidence             58877655

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.47  E-value=0.019  Score=50.16  Aligned_cols=168  Identities=9%  Similarity=0.017  Sum_probs=99.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCceeeecceeeccccc
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGL  216 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  216 (372)
                      +|+.+. ...|+.+++.......... ..+ ...+.++.|++.+..|+.+ ...+.|..+++..+....... ..     
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-~~-----   76 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIV-VGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VS-----   76 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEE-EEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-EE-----
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEE-ecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-cC-----
Confidence            344433 3678899987652111111 111 1247789999865555544 457789999987663211110 00     


Q ss_pred             ceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCe
Q 017421          217 DFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNL  293 (372)
Q Consensus       217 ~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~  293 (372)
                               .......+++.+.+ +++++-...+.|.++++........+.........+++. |.+..|+.+.  ..+.
T Consensus        77 ---------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavd-p~~g~ly~td~~~~~~  146 (318)
T 3sov_A           77 ---------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALD-PSSGFMYWTDWGEVPK  146 (318)
T ss_dssp             ---------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-GGGTEEEEEECSSSCE
T ss_pred             ---------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEe-CCCCEEEEEecCCCCE
Confidence                     00145678888754 444555567899999987544333333444567899999 5544555444  3577


Q ss_pred             EEEEeccc-----c-cCCCCCeeEEEeccCCCeEEEE
Q 017421          294 CKVNSVLL-----L-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       294 i~vwd~~~-----~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      |...++.-     + ...-.....++|+|++..|+.+
T Consensus       147 I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE
Confidence            88887651     1 1223456899999987777766

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.41  E-value=0.02  Score=49.92  Aligned_cols=146  Identities=10%  Similarity=0.020  Sum_probs=94.8

Q ss_pred             CcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE---cCCCCEEEE
Q 017421          169 RWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF---STDGRELVA  244 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~---sp~~~~l~s  244 (372)
                      ....-++.|++....|..++ ..+.|..|+...+..... ....    +....    .....+..|.|   .|+++++++
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~----~s~~g----~~~~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDG----ASSNG----DGEQQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTT----TCCSS----CCSEEEEEEEESSSSSCCEEEEE
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCC----ccccC----CCcceeeEEEEeccCCCCcEEEE
Confidence            33456789988666666665 689999999986654333 2111    00000    01124578999   688888776


Q ss_pred             Ee-------------CCCeEEEEECC---CCeEEEEee--cC-----------CCCeEEEEEeCCCCCEEEEEeCC-CeE
Q 017421          245 GS-------------SDDCIYVYDLE---ANKLSLRIL--AH-----------TSDVNTVCFGDESGHLIYSGSDD-NLC  294 (372)
Q Consensus       245 ~s-------------~dg~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~sp~~~~~l~s~~~d-g~i  294 (372)
                      ..             .+..|..||+.   +++.+....  ..           ......++.. ++|+..++++.. +.|
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAI  161 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeE
Confidence            44             26779999999   787665543  11           1247789998 999999988877 666


Q ss_pred             EEEecc----------cc-cCCCCCeeEEEeccCCCeEEEE
Q 017421          295 KVNSVL----------LL-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       295 ~vwd~~----------~~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ...+..          .. .......+.++++|+|+.|++.
T Consensus       162 ~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~  202 (334)
T 2p9w_A          162 ARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAF  202 (334)
T ss_dssp             EEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEE
Confidence            555543          11 1122346799999999988877

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.36  E-value=0.052  Score=52.18  Aligned_cols=198  Identities=9%  Similarity=-0.034  Sum_probs=112.5

Q ss_pred             CCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCC
Q 017421          124 TSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG  201 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~  201 (372)
                      ...+.+++|++.+..|..+ ...+.|..+++........ ....+ -..+..+++.+.++.|+.+ ...+.|.+.++...
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~-v~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-VVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE-EECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE-EEeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            4567899999976666554 4467888888875422111 11112 2358899999966655554 45789999999865


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  279 (372)
                      ....+..  .              .......|+++|.+..|.....  .+.|...++............-.....++++ 
T Consensus       117 ~~~~l~~--~--------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald-  179 (619)
T 3s94_A          117 LRKVLFW--Q--------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD-  179 (619)
T ss_dssp             SCEEEEC--S--------------SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEE-
T ss_pred             CEEEEEe--C--------------CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEE-
Confidence            4322221  0              1124668899997655554443  4678877876433322333344567899999 


Q ss_pred             CCCCEEEEE-eCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          280 ESGHLIYSG-SDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       280 ~~~~~l~s~-~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                      +++..|+.+ ...+.|...|+.-..      .......++++..+  .|+.+.     ..++.|...|..+++..
T Consensus       180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td-----~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          180 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTD-----WSTHSILACNKYTGEGL  247 (619)
T ss_dssp             TTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEEC-----TTTCSEEEEESSSCCCC
T ss_pred             ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEec-----CCCCEEEEEECCCCccc
Confidence            655555554 456778888875211      11223345666544  444331     02355666666666544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.31  E-value=0.054  Score=53.51  Aligned_cols=168  Identities=10%  Similarity=-0.016  Sum_probs=97.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCceeee-cceeecccc
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESL-ANVTEIHDG  215 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~-~~~~~~~~~  215 (372)
                      +|+... ...|+..++........   ... ...+.+++|++....|+.+ ...+.|+.+++........ ..+..    
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l---~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~----  467 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSL---IPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----  467 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEE---ECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----
T ss_pred             cccccc-ccceeEeeccCCcceee---ecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe----
Confidence            444433 35688888875532221   112 2357899999865555544 4467888888875321000 00000    


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CC-C
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DD-N  292 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~d-g  292 (372)
                               ........|++.+.++.| ++-...+.|.+.++........+.........|++. +.+..|+... .. +
T Consensus       468 ---------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVD-p~~g~LYwtD~g~~~  537 (791)
T 3m0c_C          468 ---------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPA  537 (791)
T ss_dssp             ---------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSC
T ss_pred             ---------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEe-cCCCCEEEecCCCCC
Confidence                     011245678888877555 455567899999998655444444445568899999 5544454443 33 6


Q ss_pred             eEEEEeccc------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          293 LCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       293 ~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .|.+.++.-      ....-.....|++++.+..|+.+
T Consensus       538 ~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             eEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE
Confidence            788887751      11233567888998877777665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.29  E-value=0.12  Score=49.80  Aligned_cols=195  Identities=9%  Similarity=-0.012  Sum_probs=115.7

Q ss_pred             CceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCc
Q 017421          125 SRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT  202 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~  202 (372)
                      ..+.+++|++.+..|. +-..++.|..+++..... .... ..+ ...+..+++.+.+..|+.+ ...+.|.+.++....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~-~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVV-EFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEE-eCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence            4678999999666555 445578899998875422 1211 111 1246788898766655544 456889999987654


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      ...+..  .              .......|+++|....|+....  .+.|...++..... ..+...-.....++++ +
T Consensus       114 ~~~l~~--~--------------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD-~  175 (628)
T 4a0p_A          114 RQVLVW--K--------------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTID-Y  175 (628)
T ss_dssp             CEEEEC--S--------------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEE-T
T ss_pred             EEEEEe--C--------------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEc-c
Confidence            322211  0              1125689999996555655442  56788888875433 3333345678899999 6


Q ss_pred             CCCEEEEEe-CCCeEEEEecccc-----cCCCCCeeEEEeccCCCeEEEEeeeeEEEe-eceEEEeecccceEEE
Q 017421          281 SGHLIYSGS-DDNLCKVNSVLLL-----TRSINPCNKYLFNPCNKYLIIYLILVISIY-SPNILLDNYFLLRTFY  348 (372)
Q Consensus       281 ~~~~l~s~~-~dg~i~vwd~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~  348 (372)
                      ++..|+.+. ..+.|..+|+...     ........++++..  ..|+.+.      | .+.|...|-.+++...
T Consensus       176 ~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~tD------~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          176 AKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWTD------WSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEEE------TTTTEEEEEETTTCCSCE
T ss_pred             ccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEec------CCCCEEEEEECCCCCceE
Confidence            666665554 5678888887521     11222334555544  2333331      2 3566666666665433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.28  E-value=0.08  Score=46.34  Aligned_cols=180  Identities=9%  Similarity=-0.058  Sum_probs=100.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...+.++.|++ +..+++ +..+.|.. ..+.++..............+..+.+.+++..++.+ .+|.|.. ..+.++.
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            44688999986 444554 44564433 333343333222111223346777777666655554 4554422 2222322


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeEEEEeecCCCCeEEEEEeCCC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGDES  281 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp~~  281 (372)
                      -....  .             ++...+..+.+.|++.+++.+...+..+-.|-  .+.+.+.  ......+..+.+. ++
T Consensus       154 W~~~~--~-------------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~-~~  215 (327)
T 2xbg_A          154 WQALV--Q-------------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFT-PD  215 (327)
T ss_dssp             EEEEE--C-------------SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEEC-TT
T ss_pred             CEEee--c-------------CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEEC-CC
Confidence            11111  0             12236888999999988877755444444553  3444432  2345678899998 77


Q ss_pred             CCEEEEEeCCCeEEEEecc---ccc----C---CCCCeeEEEeccCCCeEEEEeee
Q 017421          282 GHLIYSGSDDNLCKVNSVL---LLT----R---SINPCNKYLFNPCNKYLIIYLIL  327 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~---~~~----~---~~~~v~~~~~s~~g~~l~~~~~~  327 (372)
                      +.+++. +.+|.+++.+..   +..    .   ....+..+.+.+++..++++..+
T Consensus       216 g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          216 GRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             SCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred             CCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC
Confidence            776544 467888777321   111    1   22357889999988888877544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.012  Score=54.46  Aligned_cols=140  Identities=14%  Similarity=0.184  Sum_probs=87.0

Q ss_pred             ceEEEEECC-CCCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE-------cCCCCE
Q 017421          171 TVTDTSLSP-DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-------STDGRE  241 (372)
Q Consensus       171 ~v~~~~~~~-~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-------sp~~~~  241 (372)
                      ....|+|+| +...|+.+ ...+.|++.|+.++....+.....             +.......++|       +++++.
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-------------~~~~~p~~ia~~~~~~~~d~~G~~  206 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-------------IPTNRIRSIAFNKKIEGYADEAEY  206 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-------------SSCSBEEEEEECCCBTTTBCTTCE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-------------cccCCCcEEEEeecccccCCCCCE
Confidence            367899998 34444444 444679999998877654432111             01235889999       999996


Q ss_pred             EEEEeCCC-------eEEEEECCC-CeEE-----EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------c
Q 017421          242 LVAGSSDD-------CIYVYDLEA-NKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------L  301 (372)
Q Consensus       242 l~s~s~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~  301 (372)
                      |+++...+       .|.+++... +...     ..+... .....++++|.++.++++-..++.|..+|+.       +
T Consensus       207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t  285 (496)
T 3kya_A          207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN  285 (496)
T ss_dssp             EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred             EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence            66665543       266665443 1211     222221 2345788884466666677788889999986       1


Q ss_pred             cc-------------------CCCCCeeEEEeccCCCeEEEE
Q 017421          302 LT-------------------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       302 ~~-------------------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ..                   ........++|+|+|+.|+.+
T Consensus       286 g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          286 GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             ceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence            11                   112345789999999976666

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.13  E-value=0.046  Score=48.02  Aligned_cols=162  Identities=14%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             CceEEEEECCC----CC---EEEEEeC---CCcEEEEeCC--CCeEEEEeeec--c--cCCcceEEEEE--CCC-CC-EE
Q 017421          125 SRAYVSQFSAD----GS---LFVAGFQ---ASQIRIYDVE--RGWKIQKDILA--K--SLRWTVTDTSL--SPD-QR-HL  184 (372)
Q Consensus       125 ~~v~~~~~s~~----~~---~l~~~~~---dg~i~vwd~~--~~~~~~~~~~~--~--~~~~~v~~~~~--~~~-~~-~l  184 (372)
                      +.++.+..-|+    |+   ++++...   +.+|.+|++.  ++ .+......  .  .....+..+++  +|. ++ ++
T Consensus        68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~ya  146 (355)
T 3amr_A           68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYA  146 (355)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEE
T ss_pred             CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEE
Confidence            56777777663    22   2333333   4789999774  33 23322110  0  11134667777  774 44 57


Q ss_pred             EEEeCCCeEEEEECC---CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC----
Q 017421          185 VYASMSPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE----  257 (372)
Q Consensus       185 ~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~----  257 (372)
                      ++...+|.+..|++.   .+..... ......            -...+..+...+....|+.+-++..|+.++.+    
T Consensus       147 fV~~k~G~~~q~~l~~~~~g~~~~~-lVR~f~------------lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~  213 (355)
T 3amr_A          147 MVTGKEGEFEQYELKADKNGYISGK-KVRAFK------------MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG  213 (355)
T ss_dssp             EEECSSSEEEEEEEEECTTSCEEEE-EEEEEE------------CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC
T ss_pred             EEECCCCeEEEEEEEeCCCCcccce-EEEEec------------CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC
Confidence            777888999999883   3322111 000000            11267788888888899999998888888865    


Q ss_pred             -CCeEEEEee-cCC-CCeEEEEEe-CCCCC-EEEEEe-CCCeEEEEecc
Q 017421          258 -ANKLSLRIL-AHT-SDVNTVCFG-DESGH-LIYSGS-DDNLCKVNSVL  300 (372)
Q Consensus       258 -~~~~~~~~~-~~~-~~v~~~~~s-p~~~~-~l~s~~-~dg~i~vwd~~  300 (372)
                       +++.+..+. ++- ..+..|++- .++++ +|++++ .++++.+||..
T Consensus       214 ~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          214 SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence             345555442 222 368888874 14555 566655 67899999985

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.12  E-value=0.019  Score=51.59  Aligned_cols=122  Identities=16%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE----------E-Eeeeccc----CCcceEEEEECC---CCCEEEEE
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------Q-KDILAKS----LRWTVTDTSLSP---DQRHLVYA  187 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~----------~-~~~~~~~----~~~~v~~~~~~~---~~~~l~~~  187 (372)
                      .|..+..+|+|++||..+. ..|.|-.+..+...          . .......    ...+|..+.|+|   .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5777999999999998765 58999988732100          0 1111111    245799999999   46789999


Q ss_pred             eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--CCCeEEEE
Q 017421          188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVY  254 (372)
Q Consensus       188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--~dg~i~iw  254 (372)
                      ..|+.|++||+........ .+...  ...|..+   .....|.+++|.+++-.|...+  .+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~--~~~fg~d---~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKP--NNSFGLD---ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCC--CSEEESC---SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhcc--ccccCCC---cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999987443222 11111  1112211   1225899999999886666644  77887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.97  E-value=0.019  Score=50.98  Aligned_cols=156  Identities=15%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--EeeecccCCcceEEEEECCC---CCEEEEEeC-C-----Ce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPD---QRHLVYASM-S-----PI  192 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~  192 (372)
                      -.....++|.|+|+++++ ..+|.|.+++  .+....  ..............++|+|+   +..|+++.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345789999999995555 5669999998  343211  11111112335889999998   555554433 2     67


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN  259 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-------------dg~i~iwd~~~~  259 (372)
                      |..++...+.......+....     .......|  ....++|.|||.++++.+.             .|.|.-++....
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~-----p~~~~~~h--~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~  179 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGI-----PARPHGLH--SGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE  179 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEE-----CCCTTCCC--CCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred             EEEEEeCCCCcCceEEEEEeC-----CCCCCCCc--CCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence            888887654321111111100     00001123  2357999999976666432             256666665430


Q ss_pred             ------------eEEEEe-ecCCCCeEEEEEeCCCCCEEEEEeC
Q 017421          260 ------------KLSLRI-LAHTSDVNTVCFGDESGHLIYSGSD  290 (372)
Q Consensus       260 ------------~~~~~~-~~~~~~v~~~~~sp~~~~~l~s~~~  290 (372)
                                  .....+ .++ .....++|+|.++.++++-..
T Consensus       180 ~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          180 PAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             BCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC
T ss_pred             CCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC
Confidence                        000111 122 235678999337776665443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.96  E-value=0.035  Score=49.33  Aligned_cols=152  Identities=11%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECCC---CCEEEEEeC----C----Ce
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD---QRHLVYASM----S----PI  192 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~----d----g~  192 (372)
                      .....|+|.|+|+++++ ..+|.|++++. .+. .+...............++++|+   +..|+++..    +    +.
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45788999999985554 56699999973 443 11110011112235889999997   455544432    2    56


Q ss_pred             EEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-------------CCeEEEEECC
Q 017421          193 VHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLE  257 (372)
Q Consensus       193 i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-------------dg~i~iwd~~  257 (372)
                      |..|+.....  ......+...     + + ....|  ....|+|.|||.++++.+.             .|.|..++..
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~-----~-~-~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDG-----I-P-GAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEE-----E-E-CCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             EEEEEECCCCcCcCccEEEEEc-----C-C-CCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence            7778776541  1101101000     0 0 00123  2467999999987766432             2456666654


Q ss_pred             CC---------eEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421          258 AN---------KLSLRILAHTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       258 ~~---------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                      ..         ..+. ..++ .....++|+|.+++++++-.
T Consensus       178 G~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          178 GRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             SCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEEC
T ss_pred             CCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEec
Confidence            21         0111 1233 23568999933777666543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.96  E-value=0.2  Score=48.17  Aligned_cols=169  Identities=9%  Similarity=0.088  Sum_probs=102.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCceeeecceeecccc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      .+|+.+ ....|+..++.+..... .....+ -..+.+++|++.+..|+.+ ..++.|..+++............     
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-----   78 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNV-AIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-----   78 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEE-ECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-----
T ss_pred             cEEEEE-eCCcEEEEECCCCCcce-EEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-----
Confidence            345444 44689999998653221 111222 2357899999976666655 45788999998765432222110     


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE-eCCCe
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNL  293 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~-~~dg~  293 (372)
                                 ......+++.+.+..| ++-...+.|.+.++........+...-.....+++.|..|.++++- +..+.
T Consensus        79 -----------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~  147 (628)
T 4a0p_A           79 -----------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK  147 (628)
T ss_dssp             -----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             -----------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE
Confidence                       0145678888765545 5555578899999875443223334445678999994455444443 12567


Q ss_pred             EEEEecc-----cccCCCCCeeEEEeccCCCeEEEE
Q 017421          294 CKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       294 i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      |...++.     .+...-.....+++++++..|+.+
T Consensus       148 I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~a  183 (628)
T 4a0p_A          148 IDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWT  183 (628)
T ss_dssp             EEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCceEEEECCCCCcceEEEccccCEEEEE
Confidence            7777664     112334567889999987777666

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.94  E-value=0.072  Score=46.98  Aligned_cols=153  Identities=13%  Similarity=0.069  Sum_probs=84.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEee---ecccCCcceEEEEECCC---CCEEEEE-e--CCCeEE
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---LAKSLRWTVTDTSLSPD---QRHLVYA-S--MSPIVH  194 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~---~~~l~~~-~--~dg~i~  194 (372)
                      -...+.|+|.|||+++++--..|.|++++...+.......   ...........++++|+   +..|... +  .++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            4567899999999977766548999999876553321111   11122345889999995   3444432 2  345666


Q ss_pred             EEECCCCc-----eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-------------CCeEEEEEC
Q 017421          195 IVDVGSGT-----MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDL  256 (372)
Q Consensus       195 vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-------------dg~i~iwd~  256 (372)
                      -|.+..+.     ......+....      +. ...|  ....|.|.|||.++++.+.             .|.|.-.+.
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~------p~-~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGI------PK-GVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEE------CC-CSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcC------CC-CCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence            66665421     10000011000      00 1123  3467999999987776442             345555555


Q ss_pred             CCC---------eEEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 017421          257 EAN---------KLSLRILAHTSDVNTVCFGDESGHLIYSG  288 (372)
Q Consensus       257 ~~~---------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~  288 (372)
                      ...         ..+.. .+|. ....++|+ ++|.++++=
T Consensus       182 dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~d-p~G~L~~~d  219 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYS-YGHR-NVQGLAWD-DKQRLFASE  219 (347)
T ss_dssp             TSSBCTTCSSTTCCEEE-BCCS-BCCEEEEC-TTCCEEEEE
T ss_pred             CCCccCCCCCCCCeEEe-eCCC-CcceEEEC-CCCCEEEEe
Confidence            422         11111 2443 45689999 688766654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.94  E-value=0.13  Score=46.32  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=95.0

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc--CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec-ce
Q 017421          133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NV  209 (372)
Q Consensus       133 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~  209 (372)
                      ..+|..++.+- ++.|+.-++.... ..+......  .-..|..+..+|+|++||..+. ..|.|..+..+...... ..
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence            34565555543 3678877776432 222222321  1125788999999999998864 57889888744321110 00


Q ss_pred             eecccccceeccC-CCCccccEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCe--EEEEee---------cCCCCeEE
Q 017421          210 TEIHDGLDFSAAD-DGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANK--LSLRIL---------AHTSDVNT  274 (372)
Q Consensus       210 ~~~~~~~~~~~~~-~~~h~~~i~~~~~sp~---~~~l~s~s~dg~i~iwd~~~~~--~~~~~~---------~~~~~v~~  274 (372)
                      ........|.-++ ......+|..+.|||-   +..|++-..|+.|++||+....  +. .+.         .....|.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence            0000000011110 0113468999999995   4689999999999999998521  22 222         23367889


Q ss_pred             EEEeCCCCCEEEEEe--CCCeEEEE
Q 017421          275 VCFGDESGHLIYSGS--DDNLCKVN  297 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~--~dg~i~vw  297 (372)
                      ++|. .++-.|...+  ..|.|+-.
T Consensus       185 ~~Fg-~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFS-KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred             EEEc-CCCcEEEEEecCCCCCEEEE
Confidence            9998 7777777655  77877643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.84  E-value=0.0044  Score=60.59  Aligned_cols=160  Identities=10%  Similarity=0.015  Sum_probs=91.5

Q ss_pred             CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCC----ceeeecceeeccccccee
Q 017421          145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFS  219 (372)
Q Consensus       145 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~  219 (372)
                      ...|++.++........   . .....+..++|++.+..|+.+. ..+.|+.+++.+.    .......  .        
T Consensus       385 ~~~I~~id~~~~~~~~~---~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~--------  450 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R--------  450 (699)
T ss_dssp             TTC-CEECTTSCCEECC---S-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--S--------
T ss_pred             ccceEEEeCCCCcceee---e-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--C--------
Confidence            35788888876533221   1 1122477899998777666654 4578999998751    1111110  0        


Q ss_pred             ccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-CeEEEE
Q 017421          220 AADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVN  297 (372)
Q Consensus       220 ~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d-g~i~vw  297 (372)
                            .......|++.+.+ +++++-...+.|.++++........+.........++++|..+.++++-... +.|.++
T Consensus       451 ------~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          451 ------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             ------CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred             ------CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence                  00134457777544 4445545568899999876544333333334567889983344444443233 678777


Q ss_pred             eccc-----c-cCCCCCeeEEEeccCCCeEEEE
Q 017421          298 SVLL-----L-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       298 d~~~-----~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ++.-     + ...-.....|+|+|++..|+.+
T Consensus       525 ~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          525 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred             eCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence            7641     1 1223456789999987777665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.78  E-value=0.16  Score=46.81  Aligned_cols=113  Identities=10%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-----cCCcceEEEEECCC---CCEEEEEeC-------
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSPD---QRHLVYASM-------  189 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~l~~~~~-------  189 (372)
                      ...+.|+|.|+|+++++-...+.|++++..++..........     ........|+|+|+   +..|.++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            467799999999977765444578888765553221111111     12345779999995   555544432       


Q ss_pred             ------CCeEEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          190 ------SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       190 ------dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                            ...|..++...+.  ......+....      +. ...|  ....|+|.|||.++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~------p~-~~~H--~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGL------PS-SKDH--QSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEE------CC-CSSC--CEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcC------CC-CCCC--CCCeEeECCCCeEEEEEC
Confidence                  2345556554321  11111111100      00 1123  578999999998777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.72  E-value=0.056  Score=44.07  Aligned_cols=148  Identities=13%  Similarity=0.021  Sum_probs=80.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE-----EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-----IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  200 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  200 (372)
                      .+..++|+|+|.+.++  .+|.+.-.+..+...     ....+-..+-. ...++.|.|+|.+.++  .||.|+-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5668999999997777  667766666543100     01111111212 2578999999988877  559888777533


Q ss_pred             Cceeeec-ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------EEEEee-cCCCCe
Q 017421          201 GTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK------LSLRIL-AHTSDV  272 (372)
Q Consensus       201 ~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~-~~~~~v  272 (372)
                      .....-. .-....          .+--..+..|.|.|+|.+.++.  |+.+.-....++.      ....+- ..-..-
T Consensus       117 ~~~~~Wl~~a~~vg----------~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y  184 (236)
T 1tl2_A          117 SDTDNWIARATEVG----------SGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTF  184 (236)
T ss_dssp             STTCCHHHHSEEEE----------CSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred             CCCCceeccccEec----------cCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceE
Confidence            2211110 000000          0112368999999999877766  7775443322111      011111 111233


Q ss_pred             EEEEEeCCCCCEEEEEeCCCe
Q 017421          273 NTVCFGDESGHLIYSGSDDNL  293 (372)
Q Consensus       273 ~~~~~sp~~~~~l~s~~~dg~  293 (372)
                      .-+.|. +++.+.++.  ++.
T Consensus       185 r~l~f~-~~G~l~~v~--~g~  202 (236)
T 1tl2_A          185 KFLFFS-SVGTLFGVQ--GGK  202 (236)
T ss_dssp             EEEEEC-TTSCEEEEE--TTE
T ss_pred             EEEEEC-CCCcEEEEe--CCe
Confidence            445676 888777666  664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.56  E-value=0.23  Score=40.44  Aligned_cols=138  Identities=12%  Similarity=0.076  Sum_probs=78.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                      .+..++|+|++.+.++  .+|.++-.+..+.....-... ...-+       ..+.. ....+.|.|+|.+.++  .||.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG-------~~Gw~-~F~a~~fD~~G~LYav--~dG~  108 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIG-------NGGWN-QFQFLFFDPNGYLYAV--SKDK  108 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEE-------CSCGG-GCSEEEECTTSCEEEE--ETTE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEec-------ccccc-cceEEEECCCCCEEEe--CCCE
Confidence            5889999999987666  677776666544222111110 00000       00111 2467899999987777  4698


Q ss_pred             EEEEECCCCeEE------EEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------------CCCCCee
Q 017421          251 IYVYDLEANKLS------LRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------------RSINPCN  310 (372)
Q Consensus       251 i~iwd~~~~~~~------~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~v~  310 (372)
                      |.-++-.+....      ..+ ..-=..+..|.+. |+|.+.++.  |+.++-....+..             .....-.
T Consensus       109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr  185 (236)
T 1tl2_A          109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK  185 (236)
T ss_dssp             EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred             EEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence            887775331110      111 1111367889998 999888777  7775433222110             1112234


Q ss_pred             EEEeccCCCeEEEE
Q 017421          311 KYLFNPCNKYLIIY  324 (372)
Q Consensus       311 ~~~~s~~g~~l~~~  324 (372)
                      -+.|.++|.+.++.
T Consensus       186 ~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          186 FLFFSSVGTLFGVQ  199 (236)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEECCCCcEEEEe
Confidence            46688888877766

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.44  E-value=0.44  Score=42.12  Aligned_cols=146  Identities=14%  Similarity=0.103  Sum_probs=85.3

Q ss_pred             CceEEEEECC--CCC--EEEEEeC--CCcEEEEeCCCCeEEEEee-ecc-cCCcceEEEEECCCCCEEEEEeC-------
Q 017421          125 SRAYVSQFSA--DGS--LFVAGFQ--ASQIRIYDVERGWKIQKDI-LAK-SLRWTVTDTSLSPDQRHLVYASM-------  189 (372)
Q Consensus       125 ~~v~~~~~s~--~~~--~l~~~~~--dg~i~vwd~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~-------  189 (372)
                      -....+.+.+  ++.  ++++-..  +.+|.+|+++.+....... ... ..-.....+.+.++|++.++...       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            4677787755  453  3444333  4678888776532111111 111 12235789999999987776541       


Q ss_pred             ----------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 017421          190 ----------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA  258 (372)
Q Consensus       190 ----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~  258 (372)
                                .|.|..+|.  ++......                 .-...+.++|+||++.|+.+. ..+.|..|++..
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~-----------------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--NDVRVVAE-----------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TCCEEEEE-----------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccchhhccCCccEEEEEEC--CeEEEeec-----------------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                      244544544  32221111                 112578999999998776654 568899999863


Q ss_pred             -CeE--EEEeecCCCCeEEEEEeCC-CCCEEEEEeCC
Q 017421          259 -NKL--SLRILAHTSDVNTVCFGDE-SGHLIYSGSDD  291 (372)
Q Consensus       259 -~~~--~~~~~~~~~~v~~~~~sp~-~~~~l~s~~~d  291 (372)
                       ++.  ...+ ...+....+++. + +|++.+++..+
T Consensus       253 ~g~l~~~~~~-~~~g~PDGi~vD-~e~G~lwva~~~~  287 (355)
T 3sre_A          253 NWTLTPLRVL-SFDTLVDNISVD-PVTGDLWVGCHPN  287 (355)
T ss_dssp             TSCEEEEEEE-ECSSEEEEEEEC-TTTCCEEEEEESC
T ss_pred             CCcEecCEEE-eCCCCCceEEEe-CCCCcEEEEecCC
Confidence             322  2233 234567788998 7 59888766544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.44  E-value=0.22  Score=44.06  Aligned_cols=104  Identities=14%  Similarity=0.218  Sum_probs=61.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CCEEEEE-e
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG-S  246 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~-s  246 (372)
                      ....++|.|+|++++ +...|.|.+++  .+......... .     +.     ........|+|+|+   +..|..+ +
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~-v-----~~-----~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELS-V-----YH-----RGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECC-C-----CC-----STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecce-E-----ee-----cCCCCceeEEECCCCCCCCEEEEEEe
Confidence            467999999998555 55679999998  44322111111 0     00     01236789999998   4455443 3


Q ss_pred             CC-----CeEEEEECCCCe-----EEE-Eee---cCCCCeEEEEEeCCCCCEEEEEe
Q 017421          247 SD-----DCIYVYDLEANK-----LSL-RIL---AHTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       247 ~d-----g~i~iwd~~~~~-----~~~-~~~---~~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                      ..     ..|..|+...+.     .+. .+.   ........++|. ++|.+.++.+
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G  153 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG  153 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence            22     678888877431     121 133   111234689999 8997766643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.25  E-value=0.24  Score=42.41  Aligned_cols=147  Identities=14%  Similarity=0.084  Sum_probs=77.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeE--EEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc
Q 017421          135 DGSLFVAGFQA-----SQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT  202 (372)
Q Consensus       135 ~~~~l~~~~~d-----g~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  202 (372)
                      ++..++.|+.+     ..+.+||+.+...  ................+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56777777754     4689999887640  1111111111222222333  56677776643     368899998876


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEeec-CCCCeEEEE
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILA-HTSDVNTVC  276 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~-~~~~v~~~~  276 (372)
                      -..........          .+|    ..+.+  ++++++.|+.+     ..+.+||+.+.+-...-.. ....-.++.
T Consensus       140 W~~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  203 (301)
T 2vpj_A          140 WSMLGDMQTAR----------EGA----GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA  203 (301)
T ss_dssp             EEEEEECSSCC----------BSC----EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             EEECCCCCCCc----------ccc----eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE
Confidence            54332221110          011    12222  56777777654     4589999987754322111 111112233


Q ss_pred             EeCCCCCEEEEEeCC-----CeEEEEeccc
Q 017421          277 FGDESGHLIYSGSDD-----NLCKVNSVLL  301 (372)
Q Consensus       277 ~sp~~~~~l~s~~~d-----g~i~vwd~~~  301 (372)
                      .  .++++++.|+.+     ..+.+||+.+
T Consensus       204 ~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          204 L--LNDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             E--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             E--ECCEEEEEeCCCCCcccceEEEEeCCC
Confidence            3  256777777754     4688899863

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.16  E-value=0.16  Score=45.02  Aligned_cols=153  Identities=12%  Similarity=0.064  Sum_probs=79.0

Q ss_pred             CceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEee----ecccCCcceEEEEECCC---CCEEEEE-eC------
Q 017421          125 SRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPD---QRHLVYA-SM------  189 (372)
Q Consensus       125 ~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~-~~------  189 (372)
                      ...+.|+|.|+|+ +++ +...|.|++++.. +.......    ...........++|+|+   +..|..+ +.      
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3578899999999 554 4567999999854 32211100    01111234689999996   4444443 22      


Q ss_pred             -CCeEEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-------------CCeEEE
Q 017421          190 -SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYV  253 (372)
Q Consensus       190 -dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-------------dg~i~i  253 (372)
                       ...|..|++..+.  ......+....   ..  .....|  ....|.|.|||.++++.+.             .|.|.-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~---p~--~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~r  168 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQM---PK--LSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVR  168 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECS---SC--CBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEEC---CC--CCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEE
Confidence             2356666665431  11111110000   00  000123  2356999999966555433             246777


Q ss_pred             EECCCCe------------EEEEe-ecCCCCeEEEEEeCCCCCEEEE
Q 017421          254 YDLEANK------------LSLRI-LAHTSDVNTVCFGDESGHLIYS  287 (372)
Q Consensus       254 wd~~~~~------------~~~~~-~~~~~~v~~~~~sp~~~~~l~s  287 (372)
                      ++....-            ....+ .++ .....++|+|.+|+++++
T Consensus       169 i~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          169 LTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             EETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             ECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            7765320            11111 123 346789999336766554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.06  E-value=1.1  Score=42.95  Aligned_cols=156  Identities=8%  Similarity=-0.066  Sum_probs=94.5

Q ss_pred             CceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCc
Q 017421          125 SRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGT  202 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~  202 (372)
                      ..+.+++|++.+..|. +-...+.|..+++...... ..  ....-..+..+++.+.+..|+ +-+..+.|.+.++....
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~-~v--~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ-FV--VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE-EE--EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            4577899998555554 4445678888888754221 11  111123467889987555454 44557889999987653


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  280 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  280 (372)
                      ...+..                ..-.....|+++|....|.....  .+.|...++............-.....|+++ +
T Consensus       426 ~~~l~~----------------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD-~  488 (619)
T 3s94_A          426 RKILIS----------------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALD-Y  488 (619)
T ss_dssp             CEEEEC----------------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEE-T
T ss_pred             EEEEEE----------------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEc-c
Confidence            222211                01136789999997445544432  3678877776433322223344578899999 6


Q ss_pred             CCCEEEEEe-CCCeEEEEecc
Q 017421          281 SGHLIYSGS-DDNLCKVNSVL  300 (372)
Q Consensus       281 ~~~~l~s~~-~dg~i~vwd~~  300 (372)
                      ++..|+.+. ..+.|..+++.
T Consensus       489 ~~~~LY~aD~~~~~I~~~~~d  509 (619)
T 3s94_A          489 DEGKIYWGDAKTDKIEVMNTD  509 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEESS
T ss_pred             cCCEEEEEECCCCEEEEEecC
Confidence            665666554 45778888875

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.22  Score=43.73  Aligned_cols=117  Identities=7%  Similarity=0.034  Sum_probs=69.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC--CCCCEEEEE--eCCCeEEEEECCCCceeeecceeec
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEI  212 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~  212 (372)
                      ..+++++.||.|.-+|..+|+........  ...++....-.  +.+..++.+  +.||.|..++..+|...........
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            46888999999999999999777664332  11122221100  112234433  5799999999988754322211110


Q ss_pred             ccccceeccCCCCccccEEE---EEE-c----CCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421          213 HDGLDFSAADDGGYSFGIFS---LKF-S----TDGRELVAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       213 ~~~~~~~~~~~~~h~~~i~~---~~~-s----p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      .            ...++..   ... .    ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus        89 v------------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           89 V------------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             H------------TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             e------------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            0            0011211   000 0    1345788999999999999999999888863

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.04  E-value=0.22  Score=42.76  Aligned_cols=146  Identities=12%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC------CeEEEEECCCCcee
Q 017421          135 DGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTME  204 (372)
Q Consensus       135 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~  204 (372)
                      ++..++.|+.+    ..+.+||+.+..-... ............+.+  +++.++.|+.+      ..+.+||+.+.+-.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEE-ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            56677777754    5788999988743221 111121222223333  56677777654      46889999887654


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeEEEEeec-CCCCeEE
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILA-HTSDVNT  274 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~-~~~~v~~  274 (372)
                      .........          .+|    ..+.  .++++++.|+.         -..+.+||+.+.+-...-.. ....-.+
T Consensus       132 ~~~~~p~~r----------~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  195 (306)
T 3ii7_A          132 TKPSMLTQR----------CSH----GMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHG  195 (306)
T ss_dssp             EECCCSSCC----------BSC----EEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             eCCCCcCCc----------cee----EEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcce
Confidence            332221111          012    1222  25666666653         34588999988753222111 1111123


Q ss_pred             EEEeCCCCCEEEEEeCC-----CeEEEEeccc
Q 017421          275 VCFGDESGHLIYSGSDD-----NLCKVNSVLL  301 (372)
Q Consensus       275 ~~~sp~~~~~l~s~~~d-----g~i~vwd~~~  301 (372)
                      +...  ++++++.|+.+     ..+.+||+.+
T Consensus       196 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          196 LVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             EEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred             EEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence            3332  56777777643     3578888863

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.03  E-value=0.37  Score=42.62  Aligned_cols=141  Identities=12%  Similarity=0.091  Sum_probs=76.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee-ecceeecccccceeccCCCCccccEEEEEEcCC---CCEEEEE-
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG-  245 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~-  245 (372)
                      ....++|.|+++.|+++...|.|++++.. +.... .......     +.     ........|+|+|+   +..|... 
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v-----~~-----~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDV-----WA-----HGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCC-----CC-----STTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCccc-----cc-----CCCCCceeEEECCCCCCCCEEEEEE
Confidence            47899999999944455678999999853 32211 1111000     00     01235789999996   4444433 


Q ss_pred             eC-------CCeEEEEECCCC----eEEEE-eec------CCCCeEEEEEeCCCCCEEEEEeC-------------CCeE
Q 017421          246 SS-------DDCIYVYDLEAN----KLSLR-ILA------HTSDVNTVCFGDESGHLIYSGSD-------------DNLC  294 (372)
Q Consensus       246 s~-------dg~i~iwd~~~~----~~~~~-~~~------~~~~v~~~~~sp~~~~~l~s~~~-------------dg~i  294 (372)
                      +.       ...|..|++..+    ..... +..      .......++|. |+|.++++.+.             .|.|
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I  166 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKGYLFIALGENNQRPTAQDLDKLQGKL  166 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCCcEEEEECCCCCCCccCCCCCCCeEE
Confidence            22       235777776533    11111 111      11123579999 89976665433             2456


Q ss_pred             EEEecccc-------------c-----CCCCCeeEEEecc-CCCeEEE
Q 017421          295 KVNSVLLL-------------T-----RSINPCNKYLFNP-CNKYLII  323 (372)
Q Consensus       295 ~vwd~~~~-------------~-----~~~~~v~~~~~s~-~g~~l~~  323 (372)
                      .-++....             .     ..-.....++|+| +|++.++
T Consensus       167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence            66665421             0     0012357899999 5655544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.87  E-value=0.59  Score=42.91  Aligned_cols=110  Identities=15%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CCEEEEEe-
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGS-  246 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~s-  246 (372)
                      ..+.++|.|+|+++++-...+.|++++..++.......+....    ..+    .....+..|+|+|+   +..|.... 
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~----~~~----~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV----NDA----DGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----CCT----TSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc----ccc----CCCCceeEEEECCCcCcCCEEEEEEe
Confidence            4679999999997776544457888887655543222111100    000    01246789999995   45554333 


Q ss_pred             C------------CCeEEEEECCCC-------eEEE-Eeec-CCCCeEEEEEeCCCCCEEEEEe
Q 017421          247 S------------DDCIYVYDLEAN-------KLSL-RILA-HTSDVNTVCFGDESGHLIYSGS  289 (372)
Q Consensus       247 ~------------dg~i~iwd~~~~-------~~~~-~~~~-~~~~v~~~~~sp~~~~~l~s~~  289 (372)
                      .            ...|.-|+...+       +.+. .+.. .......|+|. ++|.+.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEEC
Confidence            2            235666665322       1121 1221 12346889999 8998777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.85  E-value=0.3  Score=41.89  Aligned_cols=145  Identities=14%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcee
Q 017421          135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTME  204 (372)
Q Consensus       135 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~  204 (372)
                      ++..++.|+.+     ..+.+||..+..-... ............+.+  +++.++.|+.++     .+.+||+.+.+-.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeC-CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            56777777654     3588999887642221 111111222222333  567777777543     5788998877654


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCeEEEE--eecCCCCeEEE
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLR--ILAHTSDVNTV  275 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-------g~i~iwd~~~~~~~~~--~~~~~~~v~~~  275 (372)
                      .........          .+|    ..+.+  ++++++.|+.+       ..+.+||+.+.+-...  +... ..-.++
T Consensus       138 ~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~  200 (302)
T 2xn4_A          138 HVAPMNTRR----------SSV----GVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGV  200 (302)
T ss_dssp             EECCCSSCC----------BSC----EEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEE
T ss_pred             ecCCCCCcc----------cCc----eEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc-cccccE
Confidence            432221110          011    12222  56666666542       3588999987753222  2111 111233


Q ss_pred             EEeCCCCCEEEEEeCC-----CeEEEEeccc
Q 017421          276 CFGDESGHLIYSGSDD-----NLCKVNSVLL  301 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~d-----g~i~vwd~~~  301 (372)
                      +..  ++++++.|+.+     ..+.+||+.+
T Consensus       201 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          201 GVL--NNLLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             EEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred             EEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence            333  57777887754     3688888863

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.80  E-value=0.81  Score=39.39  Aligned_cols=150  Identities=15%  Similarity=0.034  Sum_probs=77.7

Q ss_pred             EEECCCCCEEEEEeC-----C------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC--------
Q 017421          130 SQFSADGSLFVAGFQ-----A------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------  190 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~-----d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------  190 (372)
                      .....+++.++.|+.     .      ..+.+||+.+..-. ..............+.+  +++.++.|+.+        
T Consensus        40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~  116 (315)
T 4asc_A           40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCL  116 (315)
T ss_dssp             EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBC
T ss_pred             EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCccc
Confidence            344457888888873     1      12778898876422 21111111111222222  56666776632        


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCeEEE-
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D-----DCIYVYDLEANKLSL-  263 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d-----g~i~iwd~~~~~~~~-  263 (372)
                      ..+.+||+.+.+-..........          .+|    ..+.  .++++++.|+. +     ..+.+||+.+.+-.. 
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~  180 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLPYVV----------YGH----TVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL  180 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCC----------BSC----EEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC
T ss_pred             ceEEEECCCCCcEeECCCCCCcc----------cce----eEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC
Confidence            45889999887644332221110          011    1122  35666777765 2     358999998765322 


Q ss_pred             -EeecCCCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEeccc
Q 017421          264 -RILAHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVNSVLL  301 (372)
Q Consensus       264 -~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-----~i~vwd~~~  301 (372)
                       .+.. ...-.+++.  -++++++.|+.++     .+.+||+.+
T Consensus       181 ~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          181 APMQT-ARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             CCCSS-CCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             CCCCC-chhceEEEE--ECCEEEEEeccCCCCccceEEEEECCC
Confidence             1111 111123333  3567888887654     477888763

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.69  E-value=1  Score=39.74  Aligned_cols=192  Identities=8%  Similarity=-0.021  Sum_probs=95.1

Q ss_pred             CCceEEEEECCC---CCEEEEEeC----C----CcEEEEeCCCC--eE--EEEee--ecccCCcceEEEEECCCCCEEEE
Q 017421          124 TSRAYVSQFSAD---GSLFVAGFQ----A----SQIRIYDVERG--WK--IQKDI--LAKSLRWTVTDTSLSPDQRHLVY  186 (372)
Q Consensus       124 ~~~v~~~~~s~~---~~~l~~~~~----d----g~i~vwd~~~~--~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~  186 (372)
                      ......|+++|+   +..|.++..    +    ..|..|+....  ..  .....  ...........+.|.|||.++++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            356889999997   444444332    2    56777776643  11  11111  11111113567999999987666


Q ss_pred             EeCC-------------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCC---
Q 017421          187 ASMS-------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD---  249 (372)
Q Consensus       187 ~~~d-------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg---  249 (372)
                      .+..             |.|..++.... . ..-+...  ..-.+.    .|+. ....++|+| +++++++-....   
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~-p~~npf~--~~~i~a----~G~r-np~Gla~d~~~g~l~v~d~g~~~~d  222 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEGR-P-PADNPFP--NSPIWS----YGHR-NPQGIDWHRASGVMVATEHGPVGHD  222 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTSC-C-CTTSSST--TCCEEE----ECCS-CCCEEEECTTTCCEEEEECCSSSCC
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCCC-C-CCCCCCC--CCcEEE----EccC-CcceEEEeCCCCCEEEEecCCCCCc
Confidence            4321             34554544321 0 0000000  000000    0122 345799999 677655543222   


Q ss_pred             eEEEEECCC--------C--------eEEEEeecCCCCeEEEEEeC------CCCCEEEEEeCCCeEEEEecccc-----
Q 017421          250 CIYVYDLEA--------N--------KLSLRILAHTSDVNTVCFGD------ESGHLIYSGSDDNLCKVNSVLLL-----  302 (372)
Q Consensus       250 ~i~iwd~~~--------~--------~~~~~~~~~~~~v~~~~~sp------~~~~~l~s~~~dg~i~vwd~~~~-----  302 (372)
                      .|.+..-..        +        .++..+......+..++|..      .+|.++++.-..+.|...++...     
T Consensus       223 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~  302 (354)
T 3a9g_A          223 EVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK  302 (354)
T ss_dssp             EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE
T ss_pred             EEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc
Confidence            233322110        0        12223311224567788831      45666666656677877776521     


Q ss_pred             -----cCCCCCeeEEEeccCCCeEEEE
Q 017421          303 -----TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       303 -----~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                           ......+..+++.|||.+.++.
T Consensus       303 ~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          303 ISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             eeeeccCCCCCeeEEEECCCCcEEEEE
Confidence                 1123467899999999655554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.68  E-value=1  Score=39.61  Aligned_cols=142  Identities=13%  Similarity=0.096  Sum_probs=80.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CCEEEEE--
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG--  245 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~--  245 (372)
                      ..+.++|.|+++++++--..|.|++++...+............     .     ........|+++|+   +..|...  
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~-----~-----~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS-----P-----SGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----C-----BTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee-----e-----cCCCCceeeEeccccccCCEEEEEEe
Confidence            4789999999987766554899999987665542221111000     0     12246889999995   3444332  


Q ss_pred             -eCCCeEEEEECCCC----------eEEE-Eeec-CCCCeEEEEEeCCCCCEEEEEeC-------------CCeEEEEec
Q 017421          246 -SSDDCIYVYDLEAN----------KLSL-RILA-HTSDVNTVCFGDESGHLIYSGSD-------------DNLCKVNSV  299 (372)
Q Consensus       246 -s~dg~i~iwd~~~~----------~~~~-~~~~-~~~~v~~~~~sp~~~~~l~s~~~-------------dg~i~vwd~  299 (372)
                       ..+..|.-|.+..+          +.+. .+.. .......|.|. ++|.+.++.+.             .|.|.-.+.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence             23456666766541          1221 2221 11234569999 89988777542             245544454


Q ss_pred             ccc-c-------------CCCCCeeEEEeccCCCeEEEE
Q 017421          300 LLL-T-------------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       300 ~~~-~-------------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .-. .             ++ .....++|+|+|.+.++=
T Consensus       182 dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred             CCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence            311 0             11 234778999987765543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.50  E-value=0.92  Score=38.80  Aligned_cols=144  Identities=10%  Similarity=0.008  Sum_probs=75.0

Q ss_pred             CEEEEEeC--CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC----CeEEEEECCCCceeeeccee
Q 017421          137 SLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVT  210 (372)
Q Consensus       137 ~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~  210 (372)
                      .+++.|+.  ...+.+||..+..-... ............+.+  ++..++.|+.+    ..+.+||+.+.+-.......
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDI-RCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEEC-CCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecC-CCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            34556654  35789999987742221 111111222222332  56677777654    67889999887654332221


Q ss_pred             ecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEEeec-CCCCeEEEEEeCCCCC
Q 017421          211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGH  283 (372)
Q Consensus       211 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~  283 (372)
                      ...          .+|    ..+.+  ++++++.|+.+      ..+.+||..+.+-...-.. ....-.+++.  .+++
T Consensus        90 ~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~  151 (306)
T 3ii7_A           90 TPR----------DSL----AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGL  151 (306)
T ss_dssp             SCC----------BSC----EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE
T ss_pred             ccc----------cce----eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCE
Confidence            111          011    12222  56677777654      4589999988753222111 1111122333  2567


Q ss_pred             EEEEEeC---------CCeEEEEeccc
Q 017421          284 LIYSGSD---------DNLCKVNSVLL  301 (372)
Q Consensus       284 ~l~s~~~---------dg~i~vwd~~~  301 (372)
                      +++.|+.         -..+.+||+.+
T Consensus       152 iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          152 IYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             EEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             EEEECCCCCCCCcccccceEEEeCCCC
Confidence            7777653         34578888763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.47  E-value=0.61  Score=40.08  Aligned_cols=145  Identities=14%  Similarity=0.063  Sum_probs=77.0

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCC
Q 017421          135 DGSLFVAGFQ----A-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGS  200 (372)
Q Consensus       135 ~~~~l~~~~~----d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~  200 (372)
                      ++.+++.|+.    +     ..+.+||+.+..-... ............+.+  +++.++.|+.+     ..+.+||+.+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC-APMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC-CCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeEC-CCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence            5667777765    2     4688999887642221 111111222223333  56677776543     4688899988


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEE--eecCCCCeE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLR--ILAHTSDVN  273 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~  273 (372)
                      .+-..........          .+|    ..+.+  ++++++.|+.+     ..+.+||+.+.+-...  +... ..-.
T Consensus       147 ~~W~~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~  209 (308)
T 1zgk_A          147 DEWHLVAPMLTRR----------IGV----GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGA  209 (308)
T ss_dssp             TEEEECCCCSSCC----------BSC----EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSC
T ss_pred             CeEeECCCCCccc----------cce----EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccc
Confidence            7654333221111          012    12222  56677777654     4589999987753221  1111 1112


Q ss_pred             EEEEeCCCCCEEEEEeCC-----CeEEEEeccc
Q 017421          274 TVCFGDESGHLIYSGSDD-----NLCKVNSVLL  301 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~d-----g~i~vwd~~~  301 (372)
                      +++..  ++++++.|+.+     ..+.+||+.+
T Consensus       210 ~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          210 GVCVL--HNCIYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             EEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             eEEEE--CCEEEEEeCCCCCCccceEEEEeCCC
Confidence            33332  56777777654     4588899863

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.38  E-value=0.4  Score=41.01  Aligned_cols=145  Identities=11%  Similarity=0.040  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 017421          135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTME  204 (372)
Q Consensus       135 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~  204 (372)
                      +++.++.|+.+     ..+.+||+.+..-... ............+.+  +++.++.|+.+     ..+.+||+.+.+-.
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSML-GDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE-EECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEEC-CCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence            57777777653     3688999887643221 111111112222223  56777777654     46889999887654


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecC-CCCeEEEEEe
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAH-TSDVNTVCFG  278 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s  278 (372)
                      .........              .....+.+  ++++++.|+.+     ..+.+||+.+.+-...-... ...-.+++. 
T Consensus       189 ~~~~~p~~r--------------~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-  251 (301)
T 2vpj_A          189 NVTPMATKR--------------SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-  251 (301)
T ss_dssp             EECCCSSCC--------------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             eCCCCCccc--------------ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-
Confidence            432221110              01122222  56677777654     46899999877643221111 111112222 


Q ss_pred             CCCCCEEEEEeCCC-----eEEEEecc
Q 017421          279 DESGHLIYSGSDDN-----LCKVNSVL  300 (372)
Q Consensus       279 p~~~~~l~s~~~dg-----~i~vwd~~  300 (372)
                       .++++++.|+.++     .+.+||+.
T Consensus       252 -~~~~i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          252 -LRGRLYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             -ETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred             -ECCEEEEEcCcCCCcccccEEEEcCC
Confidence             2566777776542     34555554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.27  E-value=3.3  Score=42.84  Aligned_cols=122  Identities=11%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             CCEEEEEe----------CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421          181 QRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  250 (372)
Q Consensus       181 ~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~  250 (372)
                      ..++++|+          ..|.|.+|++..++...+..  ..             ..+++++++-- +| +|++|- ...
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~--~~-------------v~g~v~al~~~-~g-~Lla~i-g~~  905 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE--KE-------------VKGAVYSMVEF-NG-KLLASI-NST  905 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE--EE-------------ESSCEEEEEEE-TT-EEEEEE-TTE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE--EE-------------cCCcCEEEeee-CC-EEEEEc-CCE
Confidence            46788876          35789999987544322222  11             12378887633 35 455544 588


Q ss_pred             EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---------cCCCCCeeEEEeccCCCeE
Q 017421          251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------TRSINPCNKYLFNPCNKYL  321 (372)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~v~~~~~s~~g~~l  321 (372)
                      |++|++...+.+..-..+-..|..+... ..+++++.|..-..|.++..+..         .....+++++.|-.++.++
T Consensus       906 l~vy~l~~~~~L~~~~~~~~~i~~~~l~-~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l  984 (1158)
T 3ei3_A          906 VRLYEWTTEKELRTECNHYNNIMALYLK-TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFL  984 (1158)
T ss_dssp             EEEEEECTTSCEEEEEEECCCSCEEEEE-EETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEE
T ss_pred             EEEEECCCCceEEEEeeccccEEEEEEe-ccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEE
Confidence            9999998765433111111223333443 34789999988777777654421         1345677888886665433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.15  E-value=0.81  Score=39.42  Aligned_cols=159  Identities=9%  Similarity=-0.023  Sum_probs=90.7

Q ss_pred             EEECCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe----CCC
Q 017421          130 SQFSADGSLFVAGFQA--------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----MSP  191 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg  191 (372)
                      --++++|++|......              ..|+..++.......    +..    -.+..|++++++|+...    ...
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~----~~~~~~s~~g~~Iy~~~~~~~~~~  129 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDP----DPCIYASLIGNYIYYLHYDTQTAT  129 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EEC----SCEEEEEEETTEEEEEEESSSSCE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eec----CCccEEEEeCCEEEEEeecCCCCc
Confidence            3568889988766542              357777777653211    111    11236777899988776    244


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      .|...++.......+..                 +  .+  ..|+|+++.|+-.+. ...|.+-++..+.....+.   +
T Consensus       130 ~Iy~~~~dGs~~~~lt~-----------------~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~  185 (302)
T 3s25_A          130 SLYRIRIDGEEKKKIKN-----------------H--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C  185 (302)
T ss_dssp             EEEEEETTSCCCEEEES-----------------S--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred             eEEEEECCCCCeEEEeC-----------------C--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence            56666776544322222                 1  12  346778888875554 5778888888766543332   2


Q ss_pred             CeEEEEEeCCCCCEEEEEeCC--CeEEEEeccccc---CCCCCeeEEEeccCCCeEEEE
Q 017421          271 DVNTVCFGDESGHLIYSGSDD--NLCKVNSVLLLT---RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~d--g~i~vwd~~~~~---~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ... ..+. |++.+|+-....  ..|..-++....   -....+  ..|+|++++|.-+
T Consensus       186 ~~~-~~~~-P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          186 NCY-KPVV-LDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             CEE-EEEE-EETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEEE
T ss_pred             Ccc-ceee-ecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEEE
Confidence            232 3466 777777766543  345554543111   011222  4478888888755

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.12  E-value=0.55  Score=40.14  Aligned_cols=146  Identities=15%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-------CeEEEEECCCCc
Q 017421          135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-------PIVHIVDVGSGT  202 (372)
Q Consensus       135 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~  202 (372)
                      +++.++.|+.++     .+.+||+.+..-... ............+.+  +++.++.|+.+       ..+.+||+.+.+
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            567777777553     578899887643221 111111212222222  56666666542       458899998876


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEeec-CCCCeEEEE
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILA-HTSDVNTVC  276 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~-~~~~v~~~~  276 (372)
                      -..........          .+|    ..+.+  ++++++.|+.+     ..+.+||+.+.+-...-.. ....-.+++
T Consensus       185 W~~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  248 (302)
T 2xn4_A          185 WTYIAEMSTRR----------SGA----GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC  248 (302)
T ss_dssp             EEEECCCSSCC----------BSC----EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             EEECCCCcccc----------ccc----cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence            54432221110          011    22222  56777777654     3689999987753222111 111112233


Q ss_pred             EeCCCCCEEEEEeCCC-----eEEEEeccc
Q 017421          277 FGDESGHLIYSGSDDN-----LCKVNSVLL  301 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg-----~i~vwd~~~  301 (372)
                      .  .++++++.|+.++     .+.+||+.+
T Consensus       249 ~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          249 A--VNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             E--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             E--ECCEEEEECCcCCCcccccEEEEcCCC
Confidence            3  3567777777553     377777753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.01  E-value=1.6  Score=42.46  Aligned_cols=153  Identities=14%  Similarity=0.169  Sum_probs=81.4

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC--eEEEEECCCCceeee
Q 017421          135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESL  206 (372)
Q Consensus       135 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~  206 (372)
                      +++.++.|+.+      ..+.+||+.+..-... ........ -.+++...+++.++.|+.++  .+.+||+.+..-...
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~-~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~  528 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI-KSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV  528 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC-CCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC-CCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence            77778887654      3578999887632221 11111111 12333323788888887654  699999988765333


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeC--C-----CeEEEEECCCCe------E--EEEeecCCC
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS--D-----DCIYVYDLEANK------L--SLRILAHTS  270 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~--d-----g~i~iwd~~~~~------~--~~~~~~~~~  270 (372)
                      ......       +....+|    ..+.+..+ ++.++.|+.  +     ..+.+||+.+.+      -  +........
T Consensus       529 ~~~g~~-------p~~r~~~----~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R  597 (695)
T 2zwa_A          529 TPKDEF-------FQNSLVS----AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR  597 (695)
T ss_dssp             CCSSGG-------GGSCCBS----CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC
T ss_pred             cCCCCC-------CCcccce----eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc
Confidence            221000       0001112    23444554 666777765  2     458999998766      1  111111111


Q ss_pred             CeEEEEEeCCCCCEEEEEeC--------CCeEEEEeccc
Q 017421          271 DVNTVCFGDESGHLIYSGSD--------DNLCKVNSVLL  301 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~--------dg~i~vwd~~~  301 (372)
                      .-.+++.. .++.+++.|+.        ...+.+||+.+
T Consensus       598 ~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          598 YGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             BSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            11233333 34778888874        34588999874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.70  E-value=1.8  Score=37.09  Aligned_cols=141  Identities=12%  Similarity=-0.026  Sum_probs=72.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-----C------CeEEEEECCCCceeee
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----S------PIVHIVDVGSGTMESL  206 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~vwd~~~~~~~~~  206 (372)
                      +++.|+  ..+.+||..+++-...  ................+++.++.|+.     .      ..+.+||..+.+-...
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCA--SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEE--ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred             EEEEcC--CceEEECCCCCeEecC--CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence            344555  5799999988753221  11111112222233347788888873     1      1277889888765433


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeEEE--EeecCCCCeEEEE
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSL--RILAHTSDVNTVC  276 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d--------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~  276 (372)
                      ........          +|    ..+.+  +++.++.|+.+        ..+.+||..+.+-..  .+... ..-.+++
T Consensus        83 ~~~p~~r~----------~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~  145 (315)
T 4asc_A           83 PPLPSPRC----------LF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-VYGHTVL  145 (315)
T ss_dssp             CCBSSCEE----------SC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEE
T ss_pred             CCCCcchh----------ce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-ccceeEE
Confidence            22211110          11    11222  45666666632        358999998765321  11111 1112233


Q ss_pred             EeCCCCCEEEEEeC-C-----CeEEEEeccc
Q 017421          277 FGDESGHLIYSGSD-D-----NLCKVNSVLL  301 (372)
Q Consensus       277 ~sp~~~~~l~s~~~-d-----g~i~vwd~~~  301 (372)
                      .  .++++++.|+. +     ..+.+||+.+
T Consensus       146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             E--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             E--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            3  35667777765 2     4588888763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.70  E-value=1.6  Score=42.55  Aligned_cols=153  Identities=15%  Similarity=0.116  Sum_probs=84.0

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCCeEEEEeee-----cccCCcceEEEEECCCCCEEEEEeCC------CeEEEEEC
Q 017421          134 ADGSLFVAGFQA----SQIRIYDVERGWKIQKDIL-----AKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDV  198 (372)
Q Consensus       134 ~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~  198 (372)
                      .++..++.|+.+    ..+.+||..++.-......     .......-..+.+..+++.++.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            567777888753    4688999887643222101     11111222333333267777777653      35888998


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEEe-----ecCCCC
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRI-----LAHTSD  271 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg--~i~iwd~~~~~~~~~~-----~~~~~~  271 (372)
                      .+.+-..........          .+|     +++...++++++.|+.++  .+.+||..+.+-...-     ......
T Consensus       476 ~t~~W~~~~~~p~~R----------~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~  540 (695)
T 2zwa_A          476 KTREWSMIKSLSHTR----------FRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLV  540 (695)
T ss_dssp             TTTEEEECCCCSBCC----------BSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred             CCCcEEECCCCCCCc----------ccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccc
Confidence            887654332221111          011     222223788888887654  6999999887532221     111222


Q ss_pred             eEEEEEeCCC-CCEEEEEeC--C-----CeEEEEecccc
Q 017421          272 VNTVCFGDES-GHLIYSGSD--D-----NLCKVNSVLLL  302 (372)
Q Consensus       272 v~~~~~sp~~-~~~l~s~~~--d-----g~i~vwd~~~~  302 (372)
                      ..++.+. .+ +++++.|+.  +     ..+.+||+.+.
T Consensus       541 ~~a~v~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          541 SAGLEFD-PVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             SCEEEEE-TTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             eeEEEEe-CCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            3346666 44 777777765  2     35888887643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.46  E-value=2.1  Score=36.75  Aligned_cols=150  Identities=12%  Similarity=0.075  Sum_probs=76.8

Q ss_pred             EECCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-------Ce
Q 017421          131 QFSADGSLFVAGFQ----AS-------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-------PI  192 (372)
Q Consensus       131 ~~s~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~  192 (372)
                      ....++..++.|+.    ++       .+.+||..+..-... ............+.+  +++.++.|+.+       ..
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~  128 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDS  128 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC-SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC-CCCCccccccceEEE--CCEEEEEcCccCCCCcccce
Confidence            34567888888873    12       177888877633221 111111111222223  56777777653       35


Q ss_pred             EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEee
Q 017421          193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRIL  266 (372)
Q Consensus       193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~  266 (372)
                      +.+||+.+.+-..........          .+|    ..+.  .++++++.|+.      -..+.+||+.+.+-...-.
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r----------~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~  192 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKV----------YGH----NVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP  192 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCE----------ESC----EEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEeCCCCCEeECCCCCCcc----------ccc----EEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC
Confidence            888998887654333221111          012    1122  35666676653      2358999998875322211


Q ss_pred             c-CCCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEeccc
Q 017421          267 A-HTSDVNTVCFGDESGHLIYSGSDD-----NLCKVNSVLL  301 (372)
Q Consensus       267 ~-~~~~v~~~~~sp~~~~~l~s~~~d-----g~i~vwd~~~  301 (372)
                      . ....-.+++..  ++++++.|+.+     ..+.+||+.+
T Consensus       193 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          193 MKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             CCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence            1 11111233333  56777777643     3467788763

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.22  E-value=0.54  Score=41.32  Aligned_cols=54  Identities=15%  Similarity=0.094  Sum_probs=28.5

Q ss_pred             CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC
Q 017421          135 DGSLFVAGFQ-A---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS  190 (372)
Q Consensus       135 ~~~~l~~~~~-d---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  190 (372)
                      ++++++.|+. +         ..+.+||+.+..-................+.  .+++.++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5677777765 2         4689999987642221111101111122222  467777888754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.20  E-value=3.1  Score=37.66  Aligned_cols=198  Identities=10%  Similarity=0.063  Sum_probs=115.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 017421          129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN  208 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  208 (372)
                      +.-.+|..+.||.-. ..++.|||+++..++.......    +|.-..|-.+ +.|+..+ +..|+.|++..... . .+
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e----~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~-P-~k  140 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ-P-VK  140 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS----CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCC-C-EE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC----CceEEEecCC-CeEEEEc-CCeeEEecccCCCC-c-hh
Confidence            344788888777655 5799999999987776544322    5777788644 4455444 46799999975321 1 11


Q ss_pred             eeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEe--C
Q 017421          209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFG--D  279 (372)
Q Consensus       209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p  279 (372)
                      ..+-+..+         ....|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+|...-..+...  +
T Consensus       141 vFdR~~~L---------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~  210 (494)
T 1bpo_A          141 MFDRHSSL---------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNA  210 (494)
T ss_dssp             EEECCGGG---------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCS
T ss_pred             heecchhc---------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCC
Confidence            11111111         123677778889999886332       23678899988654 35667775444333332  0


Q ss_pred             CCCCEEEEEeC---CCeEEEEeccccc----CCCCCe--------------eEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421          280 ESGHLIYSGSD---DNLCKVNSVLLLT----RSINPC--------------NKYLFNPCNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       280 ~~~~~l~s~~~---dg~i~vwd~~~~~----~~~~~v--------------~~~~~s~~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                      ....+++.+..   .+.++|.++....    ......              .++..++.-..+..-+      --|-+.+
T Consensus       211 ~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT------K~G~i~l  284 (494)
T 1bpo_A          211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT------KYGYIHL  284 (494)
T ss_dssp             SEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE------TTSEEEE
T ss_pred             CCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe------cCceEEE
Confidence            11124444443   2789998885321    111222              3344444433333322      2377889


Q ss_pred             eecccceEEEEEe
Q 017421          339 DNYFLLRTFYSFM  351 (372)
Q Consensus       339 w~~~~~~~~~~~~  351 (372)
                      +|+.++..++.-.
T Consensus       285 yDleTgt~i~~nr  297 (494)
T 1bpo_A          285 YDLETGTCIYMNR  297 (494)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             Eecccceeeeeec
Confidence            9999999887543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.18  E-value=1.1  Score=38.66  Aligned_cols=135  Identities=10%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             EECCCCCEEEEEe--CC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceee
Q 017421          131 QFSADGSLFVAGF--QA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMES  205 (372)
Q Consensus       131 ~~s~~~~~l~~~~--~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~  205 (372)
                      .|++++++|+-..  .+  ..|..-++.... ... +.  .+.  +  ..|+|+++.|+..+. ...|.+.++..+....
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~-lt--~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~  181 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKK-IK--NHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL  181 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEE-EE--SSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEE-Ee--CCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence            6788898888765  33  345555555332 222 11  221  2  346778888887665 6788888887765433


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      +..   .                ... ..++|++.+|+-....  ..|..-++..... ..+..  ..+  ..|+ |++.
T Consensus       182 l~~---~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~-~~g~  235 (302)
T 3s25_A          182 FYD---C----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYN-VYGS  235 (302)
T ss_dssp             EEC---S----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEE-EETT
T ss_pred             EeC---C----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEE-ECCC
Confidence            321   0                111 2356999888766543  3566667765442 33432  233  3366 6777


Q ss_pred             EEEEEeC--CCeEEEEec
Q 017421          284 LIYSGSD--DNLCKVNSV  299 (372)
Q Consensus       284 ~l~s~~~--dg~i~vwd~  299 (372)
                      .|+.++.  .+.|..-++
T Consensus       236 ~Iy~~~~~~~~~i~~~~~  253 (302)
T 3s25_A          236 LIFYQRGGDNPALCVVKN  253 (302)
T ss_dssp             EEEEEECSSSCEEEEEET
T ss_pred             EEEEEECCCCcEEEEEEC
Confidence            7776533  234444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.86  E-value=0.89  Score=39.01  Aligned_cols=144  Identities=14%  Similarity=0.134  Sum_probs=74.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 017421          135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTME  204 (372)
Q Consensus       135 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~  204 (372)
                      +++.++.|+.+     ..+.+||+.+..-... ............+.+  +++.++.|+.+     ..+.+||+.+.+-.
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  197 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWR  197 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeEC-CCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence            56777776643     3688999887642221 111111222223333  56677777654     45889999877654


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEE--eecCCCCeEEEEE
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLR--ILAHTSDVNTVCF  277 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~  277 (372)
                      ........          ..+|    ..+.+  ++++++.|+.+     ..+.+||+.+.+-...  +... ..-.+++.
T Consensus       198 ~~~~~p~~----------r~~~----~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~  260 (308)
T 1zgk_A          198 MITAMNTI----------RSGA----GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITV  260 (308)
T ss_dssp             ECCCCSSC----------CBSC----EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE
T ss_pred             eCCCCCCc----------cccc----eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccceEEEE
Confidence            33221111          0012    22222  56677777654     4599999987753221  1111 11123333


Q ss_pred             eCCCCCEEEEEeCC-----CeEEEEecc
Q 017421          278 GDESGHLIYSGSDD-----NLCKVNSVL  300 (372)
Q Consensus       278 sp~~~~~l~s~~~d-----g~i~vwd~~  300 (372)
                      .  ++++++.|+.+     ..+.+||+.
T Consensus       261 ~--~~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          261 H--QGRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             E--CCEEEEEcCcCCCcccceEEEEcCC
Confidence            2  56677777644     235566654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.31  E-value=0.79  Score=42.77  Aligned_cols=114  Identities=12%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC
Q 017421          171 TVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  249 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg  249 (372)
                      ....+..+|||+++++++. +.++.++|++.-.......+......+.-.+    .-.-.....+|.++|....+-.-|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~----e~GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP----ELGLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC----BCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec----cCCCcccEEEECCCCceEeeeeecc
Confidence            4678899999999887765 8899999987421100000000000000000    0112577899999996556667899


Q ss_pred             eEEEEECCCC----------eEEEEeecCCCCeEEEEEe-----CCCCCEEEEEe
Q 017421          250 CIYVYDLEAN----------KLSLRILAHTSDVNTVCFG-----DESGHLIYSGS  289 (372)
Q Consensus       250 ~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~s-----p~~~~~l~s~~  289 (372)
                      .|..|++...          ..+..+.-|-.+- .+.-+     .++|++|++..
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence            9999998753          3555555443222 12111     26677777664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.14  E-value=6.7  Score=35.57  Aligned_cols=168  Identities=11%  Similarity=0.047  Sum_probs=101.5

Q ss_pred             CCceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC---CCEEEEEeCC---
Q 017421          124 TSRAYVSQFSADGSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMS---  190 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d---  190 (372)
                      ...|..-..+++.++++..+       -.|.+.+|..+.+..    ....+|-.....+.+.-+   .+.++.+...   
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE----EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc----chheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence            45566667788999876432       246789999887622    224566554444443321   1245555443   


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      +.+++.++...... ..........+.|.+.   .-..-.-++..++....+..-+.-|.|++||+.++.++..-.-...
T Consensus       226 ~kLhi~Ei~~~~~~-~~~f~kk~vdv~fppe---~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~  301 (494)
T 1bpo_A          226 GKLHIIEVGTPPTG-NQPFPKKAVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE  301 (494)
T ss_dssp             CEEEEEECSCCCTT-CCCCCCEEEECCCCTT---STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             cEEEEEEcCCCccC-CCCccceeeeeeCCcc---cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC
Confidence            78999998643100 0011111111222221   1223455788888888888889999999999999999888776666


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                      .|..-+-+ ....=++.....|.|.-..+.
T Consensus       302 ~iF~t~~~-~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          302 TIFVTAPH-EATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             CEEEEEEE-TTTTEEEEEETTCEEEEEEEC
T ss_pred             ceEEeccc-CCCCcEEEEccCceEEEEEEc
Confidence            77666666 444445555577876655544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.25  E-value=3.6  Score=37.73  Aligned_cols=114  Identities=13%  Similarity=-0.007  Sum_probs=60.0

Q ss_pred             CceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe---EEEEee--ecc----cCCcceEEEEECCC----CCEEEEEeC-
Q 017421          125 SRAYVSQFSADGS-LFVAGFQASQIRIYDVERGW---KIQKDI--LAK----SLRWTVTDTSLSPD----QRHLVYASM-  189 (372)
Q Consensus       125 ~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~---~~~~~~--~~~----~~~~~v~~~~~~~~----~~~l~~~~~-  189 (372)
                      ...+.|+|.|||. .|+++...|.|++++.....   .+....  ...    ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3567899999996 45556778999999754321   111100  011    11345789999996    333333332 


Q ss_pred             -C----------CeEEEEECCCCc--eee---ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421          190 -S----------PIVHIVDVGSGT--MES---LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  247 (372)
Q Consensus       190 -d----------g~i~vwd~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~  247 (372)
                       +          ..|.-|.+..+.  ...   ...+..      .. .....|  ....|.|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~------~~-~~~~~H--~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLE------VA-ELHRKH--LGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEE------EE-ESSSSS--CEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEE------cC-CCCCcc--cCCcEeECCCCcEEEEeCC
Confidence             1          144446654321  000   000111      00 011134  4678999999987776554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.00  E-value=6.8  Score=33.46  Aligned_cols=141  Identities=15%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC----CC-------eEEEEECCCCceeee
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMESL  206 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~  206 (372)
                      .++.|+.  .+.+||..+++-..... ..... .........++..++.|+.    ++       .+.+||..+.+-...
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~-~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTAL-AEQIP-RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEE-CTTSC-SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhcccc--ceEEECCCCCceecccC-CccCC-ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            3444543  48899998875333211 11111 1222233457778888873    11       277888887765433


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCeEEEEeecCCCCe--EEEEE
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLRILAHTSDV--NTVCF  277 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~v--~~~~~  277 (372)
                      .......          ..|    ..+.+  +++.++.|+.+       ..+.+||+.+.+-... .....+.  .+++.
T Consensus        94 ~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~  156 (318)
T 2woz_A           94 PPLPSAR----------CLF----GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS  156 (318)
T ss_dssp             SCBSSCB----------CSC----EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE
T ss_pred             CCCCccc----------ccc----ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE
Confidence            2221111          012    11222  56677777653       2588999987653222 1111111  12223


Q ss_pred             eCCCCCEEEEEeC------CCeEEEEeccc
Q 017421          278 GDESGHLIYSGSD------DNLCKVNSVLL  301 (372)
Q Consensus       278 sp~~~~~l~s~~~------dg~i~vwd~~~  301 (372)
                        .++.+++.|+.      -..+.+||+.+
T Consensus       157 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          157 --HNGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             --ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             --ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence              35677777764      23588888863

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.20  E-value=19  Score=37.26  Aligned_cols=184  Identities=12%  Similarity=0.126  Sum_probs=95.0

Q ss_pred             CCCceEEEEECCC------CCEEEEEeC-CCcEEEEeCCCCeEEEEeeecc-cCCcceEEEEECCCCCEEEEEeCCCeEE
Q 017421          123 TTSRAYVSQFSAD------GSLFVAGFQ-ASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH  194 (372)
Q Consensus       123 ~~~~v~~~~~s~~------~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  194 (372)
                      ....|.|+++.|.      .+++++|.. |++|+|+++...+.+....... .....+.-+.+ ....+|..|-.||.+.
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~  630 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALF  630 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEE
Confidence            3568999999863      378999997 9999999998765544322211 11112333333 2345788899999876


Q ss_pred             EEECC--CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 017421          195 IVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  272 (372)
Q Consensus       195 vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v  272 (372)
                      .+.+.  ++..........             | ..++.-..+...+..-+.+..+....+|--+ ++.... .-....+
T Consensus       631 ~~~~d~~tg~l~d~r~~~L-------------G-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v  694 (1158)
T 3ei3_A          631 YFGLNIETGLLSDRKKVTL-------------G-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV  694 (1158)
T ss_dssp             EEEECTTTCCEEEEEEEEC-------------C-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred             EEEEcCCCCccccceeEEc-------------C-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence            66554  444322211111             0 1134333343334333333334444444433 222211 1111223


Q ss_pred             -EEEEEeCCC-CCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEE
Q 017421          273 -NTVCFGDES-GHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       273 -~~~~~sp~~-~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                       ....|+... ..-++.. .++.++|..+..+.       .....+..++++|..+.++++
T Consensus       695 ~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~  754 (1158)
T 3ei3_A          695 NYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVL  754 (1158)
T ss_dssp             CEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEE
T ss_pred             ceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEE
Confidence             334554221 2344433 34558887764322       234567888999987765544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.88  E-value=8.9  Score=40.31  Aligned_cols=201  Identities=11%  Similarity=0.086  Sum_probs=108.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecce
Q 017421          130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV  209 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  209 (372)
                      .-.+|..+.+|.-. ..++.|||+++..++.....    ..+|.-..|-.+. .|+..+ +..|+.|++..... +. ..
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~-P~-k~  141 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ-PV-KM  141 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhccccc----CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCc-cH-HH
Confidence            34688888776654 67999999998766554322    3368788887544 444443 46799999965221 11 11


Q ss_pred             eecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEe--CC
Q 017421          210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFG--DE  280 (372)
Q Consensus       210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p~  280 (372)
                      ..-+..+         -...|..-.-+++.++++..+       -.|.+.+|.++.+. .+.+.+|...-..+...  ++
T Consensus       142 fdR~~~L---------~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~  211 (1630)
T 1xi4_A          142 FDRHSSL---------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAE  211 (1630)
T ss_pred             Hhcchhc---------ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCC
Confidence            1111110         023677777788888876332       34788899887653 34556665443333332  11


Q ss_pred             CCCEEEEEeC---CCeEEEEecccc----cCCCCCeeEEEeccCC--CeEEE---E-eeeeEEE--eeceEEEeecccce
Q 017421          281 SGHLIYSGSD---DNLCKVNSVLLL----TRSINPCNKYLFNPCN--KYLII---Y-LILVISI--YSPNILLDNYFLLR  345 (372)
Q Consensus       281 ~~~~l~s~~~---dg~i~vwd~~~~----~~~~~~v~~~~~s~~g--~~l~~---~-~~~~~~~--~d~~i~lw~~~~~~  345 (372)
                      ...+++.+..   .+.++|-++...    .........+-|.|+.  .+=++   + .-+.+.+  --|-+.++|+.|+.
T Consensus       212 ~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             CceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence            2223333322   268888888543    1222233444454431  11110   0 0111111  23778899999988


Q ss_pred             EEEE
Q 017421          346 TFYS  349 (372)
Q Consensus       346 ~~~~  349 (372)
                      .++.
T Consensus       292 ~i~~  295 (1630)
T 1xi4_A          292 CIYM  295 (1630)
T ss_pred             hhhh
Confidence            7653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.92  E-value=11  Score=34.37  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=61.6

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCC----CCEEEE
Q 017421          171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVA  244 (372)
Q Consensus       171 ~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s  244 (372)
                      ..+.|+|.|++. .|+++...|.|++++...... ..+..+...     +......+.......|+|+|+    +.+.++
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~-----~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~   89 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKL-----VQSGIKGGDERGLLSLAFHPNYKKNGKLYVS   89 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTT-----BCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcce-----eccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence            478999999996 566667889999997543211 011111000     000000012346789999996    443343


Q ss_pred             EeC--C----------CeEEEEECCC----------CeEEEEee--cCCCCeEEEEEeCCCCCEEEEEeC
Q 017421          245 GSS--D----------DCIYVYDLEA----------NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD  290 (372)
Q Consensus       245 ~s~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~sp~~~~~l~s~~~  290 (372)
                      -+.  +          ..|.-|.+..          .+.+..+.  ........|+|. |||.+.++.+.
T Consensus        90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-pDG~LYv~~Gd  158 (463)
T 2wg3_C           90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-PDGFLYIILGD  158 (463)
T ss_dssp             EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-TTSCEEEEECC
T ss_pred             EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-CCCcEEEEeCC
Confidence            322  1          1455566542          22333333  112245789999 89988777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.47  E-value=14  Score=38.85  Aligned_cols=167  Identities=11%  Similarity=0.067  Sum_probs=89.2

Q ss_pred             CCceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC--C-CCCEEEEEeC---C
Q 017421          124 TSRAYVSQFSADGSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--P-DQRHLVYASM---S  190 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~~~---d  190 (372)
                      ...|..-..+++.++++..+       -.|.+.+|..+.+.    .....+|-.....+...  + ....++.+..   .
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~----sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc----chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence            44566667788888876433       34788999987651    12244554444333332  1 1223333332   2


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  270 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  270 (372)
                      +.++|.++...... ...+......+.|.+.   .-..-...+..++....+...+.-|.|.+||+.++.++..-.-...
T Consensus       226 ~kLhi~Ei~~~~~~-~~~f~kk~~~~~~~~~---~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~  301 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTG-NQPFPKKAVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE  301 (1630)
T ss_pred             ceEEEEecCCCccC-CCCCccccccccCCcc---cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC
Confidence            68899888553100 0111111112222221   1112344677788777888888899999999999998766554444


Q ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          271 DVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      .|...+-+++.+..+. ....|.|.-..+
T Consensus       302 ~iF~~~~~~~~~g~~~-vnr~G~vl~v~v  329 (1630)
T 1xi4_A          302 TIFVTAPHEATAGIIG-VNRKGQVLSVCV  329 (1630)
T ss_pred             ceEEeccCCCCCceEE-EcCCceEEEEEE
Confidence            5544444423333333 335555444333

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.77  E-value=15  Score=31.84  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=37.1

Q ss_pred             CCCEEEEEeCC-CcEEEEeCCC-CeEEEEeeecc-cCCcceEEEEECCCCCEEEEEeC-C---------CeEEEEECCCC
Q 017421          135 DGSLFVAGFQA-SQIRIYDVER-GWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM-S---------PIVHIVDVGSG  201 (372)
Q Consensus       135 ~~~~l~~~~~d-g~i~vwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~vwd~~~~  201 (372)
                      +++.++.|+.+ ..+.+||+.. ........... ........+.+  +++.++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666776543 4688999863 11222211111 11122222333  5667777665 2         46889999887


Q ss_pred             ceeee
Q 017421          202 TMESL  206 (372)
Q Consensus       202 ~~~~~  206 (372)
                      +-...
T Consensus        97 ~W~~~  101 (357)
T 2uvk_A           97 SWVKL  101 (357)
T ss_dssp             EEEEC
T ss_pred             cEEEC
Confidence            65433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=83.32  E-value=13  Score=32.34  Aligned_cols=61  Identities=10%  Similarity=-0.048  Sum_probs=37.5

Q ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCeEEEEEe--CCCCCEEEEE-eCCCeEEEEecc
Q 017421          240 RELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFG--DESGHLIYSG-SDDNLCKVNSVL  300 (372)
Q Consensus       240 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s--p~~~~~l~s~-~~dg~i~vwd~~  300 (372)
                      ..++.++.||.|.-+|..+|+...++... ..++....-.  +.++..++.. ..||.|..++..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~   75 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH   75 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence            46888999999999999999998888754 1222221100  0122333332 467777777754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.73  E-value=43  Score=33.79  Aligned_cols=73  Identities=18%  Similarity=0.067  Sum_probs=47.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-----CCCeEEEEEeCCCCCEEEEE---eCCCeEEEEec
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESGHLIYSG---SDDNLCKVNSV  299 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~~l~s~---~~dg~i~vwd~  299 (372)
                      ..+.+++..++..++++-+.|+++++|++.+++++.+..-.     ..........|..+.++.+-   ..+|..++|.+
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~  315 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL  315 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence            46777888888899999999999999999999988875411     11111222333344444332   24566777765


Q ss_pred             c
Q 017421          300 L  300 (372)
Q Consensus       300 ~  300 (372)
                      .
T Consensus       316 ~  316 (950)
T 4gq2_M          316 N  316 (950)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=82.67  E-value=37  Score=33.02  Aligned_cols=185  Identities=14%  Similarity=0.102  Sum_probs=104.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ...|.++....+|. |-+|+.+| +..||..+......   .......|.++.. .++ .|..++.+ -+..+|..+++.
T Consensus        62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~  133 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL  133 (758)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE
T ss_pred             CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE
Confidence            45688888777775 44555655 78999887632211   1111224666654 344 45556665 578899877654


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecC----CCCeEEEEEe
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAH----TSDVNTVCFG  278 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~----~~~v~~~~~s  278 (372)
                      ........   +         -....|.++....+|.+.+ |+. +.+..+|..+++..... ...    ...|.++...
T Consensus       134 ~~~~~~~~---~---------l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  199 (758)
T 3ott_A          134 TSFDTRRN---G---------LPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED  199 (758)
T ss_dssp             EEECHHHH---C---------CSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred             EEeccCCC---C---------cCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence            32211000   0         0113688888888887665 444 45778898776542211 111    1247888887


Q ss_pred             CCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          279 DESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       279 p~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                       .++..|..|+. +-|..+|..+..      .....|.++...++|.+.+.. ...+..++
T Consensus       200 -~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~  257 (758)
T 3ott_A          200 -TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYH  257 (758)
T ss_dssp             -TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEEC
T ss_pred             -CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEe
Confidence             66665545553 457777765321      112347777777777766544 34455554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=81.70  E-value=5.2  Score=37.43  Aligned_cols=68  Identities=9%  Similarity=-0.028  Sum_probs=48.7

Q ss_pred             CCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc------------------CCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421          270 SDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT------------------RSINPCNKYLFNPCNKYLIIYLILVIS  330 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~------------------~~~~~v~~~~~s~~g~~l~~~~~~~~~  330 (372)
                      .....+.++ |||++++.++ .+.++.++|++.+.                  .........+|.++| ..++..     
T Consensus       323 ksPHGv~vs-PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtl-----  395 (638)
T 3sbq_A          323 KNPHGCNTS-SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTL-----  395 (638)
T ss_dssp             SSCCCEEEC-TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEE-----
T ss_pred             CCCcceeeC-CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeee-----
Confidence            344578888 9999888766 68899999998432                  123455778999999 444431     


Q ss_pred             EeeceEEEeecccc
Q 017421          331 IYSPNILLDNYFLL  344 (372)
Q Consensus       331 ~~d~~i~lw~~~~~  344 (372)
                      .-|.+|--|++...
T Consensus       396 fidSqvvkWni~~a  409 (638)
T 3sbq_A          396 FIDSQVVKWNMEEA  409 (638)
T ss_dssp             TTTTEEEEEEHHHH
T ss_pred             eecceEEEEeccHH
Confidence            14899999998775

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.02  E-value=15  Score=35.53  Aligned_cols=38  Identities=18%  Similarity=0.101  Sum_probs=31.0

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421          228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      ..|.++.+  +..++++-+.|.++|+|++++++++.+..-
T Consensus       222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            45666655  367999999999999999999998877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.1 bits (175), Expect = 1e-14
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 18/194 (9%)

Query: 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD 162
           D    L               T        + D  LFV+G   +  +++DV  G   Q  
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT- 221

Query: 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222
                    +      P+       S      + D+ +       +   I  G       
Sbjct: 222 --FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG------- 272

Query: 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282
                  I S+ FS  GR L+AG  D    V+D      +  +  H + V+ +    + G
Sbjct: 273 -------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDG 324

Query: 283 HLIYSGSDDNLCKV 296
             + +GS D+  K+
Sbjct: 325 MAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (124), Expect = 3e-08
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 17/125 (13%)

Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
            F  +G+ F  G   +  R++D+    ++        +   +T  S S   R L+     
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDD 291

Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
              ++ D         A V   HD               +  L  + DG  +  GS D  
Sbjct: 292 FNCNVWDALKAD---RAGVLAGHDN-------------RVSCLGVTDDGMAVATGSWDSF 335

Query: 251 IYVYD 255
           + +++
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
           G+   I+++ + TD R LV+ S D  + ++D         I   +S V T  +     ++
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 285 IY 286
             
Sbjct: 113 AC 114

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 28/188 (14%), Positives = 70/188 (37%), Gaps = 13/188 (6%)

Query: 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----DILAKSLRWTVT 173
             +        V+    DG    AG     +R++D E G+ +++    +      + +V 
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258

Query: 174 DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 233
               + D + +V  S+   V + ++ +   +S +                      + S+
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF----VLSV 314

Query: 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-----GHLIYSG 288
             + +   +++GS D  +  +D ++    L +  H + V +V   + S      ++  +G
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374

Query: 289 SDDNLCKV 296
           S D   ++
Sbjct: 375 SGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 19/136 (13%)

Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---------TVTDTSLSPDQ 181
            F+ DG   V+G     +++++++            S             V   + + + 
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320

Query: 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241
            +++  S    V   D  SG       + + H     S A                +   
Sbjct: 321 EYILSGSKDRGVLFWDKKSGN---PLLMLQGHRNSVISVA-------VANGSSLGPEYNV 370

Query: 242 LVAGSSDDCIYVYDLE 257
              GS D    ++  +
Sbjct: 371 FATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 37/217 (17%), Positives = 63/217 (29%), Gaps = 50/217 (23%)

Query: 131 QFSADGSLFVAGFQASQIRIYDVE---------------RGWKIQKDILAKSLRWTVTDT 175
           +FS DG     G   +  ++Y V                +  +      + S    +   
Sbjct: 69  KFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI----- 230
             SPD + L   +   ++ I D+ +  +  +    E                 G      
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187

Query: 231 ---------------------FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---- 265
                                       DG+ + AGS D  + V+D E   L  R+    
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247

Query: 266 ---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299
                H   V +V F    G  + SGS D   K+ ++
Sbjct: 248 ESGTGHKDSVYSVVF-TRDGQSVVSGSLDRSVKLWNL 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 25/197 (12%), Positives = 66/197 (33%), Gaps = 6/197 (3%)

Query: 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD 162
           D    +                    + + + DG+L  +      +R++ V       + 
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

Query: 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD---VGSGTMESLANVTEIHDGLDFS 219
              + +   ++    S                      + SG+ +    + ++  G+   
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279
                G+   +  + F + G+ +++ + D  + V+D +  +    + AH   V ++ F  
Sbjct: 242 TLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-H 298

Query: 280 ESGHLIYSGSDDNLCKV 296
           ++   + +GS D   KV
Sbjct: 299 KTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 7e-07
 Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 19/141 (13%)

Query: 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174
              +      + +   +    G   ++G +   I+++DV  G  +            V  
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT---LVGHDNWVRG 252

Query: 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
                  + ++  +    + + D  +            H+               + SL 
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR---CMKTLNAHEH-------------FVTSLD 296

Query: 235 FSTDGRELVAGSSDDCIYVYD 255
           F      +V GS D  + V++
Sbjct: 297 FHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277
           G+   +  + F      +V+ S D  I V+D E       +  HT  V  + F
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 33/240 (13%), Positives = 72/240 (30%), Gaps = 48/240 (20%)

Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQ------KDILAKSLRWTVTDTSLSPDQRHL 184
            F    S+ V+  + + I+++D E G   +        +   S   +    +       +
Sbjct: 24  IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 83

Query: 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG-----------------GYS 227
                     I  +        +     +     SA+ D                  G+ 
Sbjct: 84  KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 143

Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES------ 281
             +  ++ + DG  + + S+D  + V+ +   +    +  H   V  + +  ES      
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203

Query: 282 -------------GHLIYSGSDDNLCKV------NSVLLLTRSINPCNKYLFNPCNKYLI 322
                        G  + SGS D   K+        ++ L    N     LF+   K+++
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLI 285
            I  +K       L+  S D  + VY  +    ++ +L    +   +    F D +   I
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 286 YSGSDDNLCKVN 297
           Y G+        
Sbjct: 73  YVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 4/206 (1%)

Query: 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163
                   +        + T  +  +     + S  + G   SQ++ + +         I
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 164 LAKSLRWT-VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222
               L++       L  +Q     +S+   V +        +   +              
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG-DDYNSSKRFAFRCHRLNLK 246

Query: 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282
           D   ++ + S++FS   + L    SD  I  ++L+  K  ++  A  ++ + V     S 
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKI-ACSD 304

Query: 283 HLIYSGSDDNLCKVNSVLLLTRSINP 308
           +++   + D+  K N+ +  T  +N 
Sbjct: 305 NILCLATSDDTFKTNAAIDQTIELNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 5/66 (7%), Positives = 18/66 (27%)

Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
           +     SL +       + +Y  +   K    + +   +  +   +   +    +Y    
Sbjct: 18  KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

Query: 191 PIVHIV 196
               + 
Sbjct: 78  QGEILK 83

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 8e-09
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285
           +   + SLKF+  G+  V+   D+ +  +        +     +S V +          I
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQSKESSSVLSCDI-SVDDKYI 321

Query: 286 YSGSDDNLCKVNSVL 300
            +GS D    V  V+
Sbjct: 322 VTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 9e-05
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 17/88 (19%)

Query: 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228
              V     +   +  V      +++      G     +                   S 
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----------------KESS 307

Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDL 256
            + S   S D + +V GS D    VY++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
            +S   + DG+        D +    +  +   +  L H   V  V         +Y+G 
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTI-SNPTRHVYTGG 70

Query: 290 DDNL 293
              +
Sbjct: 71  KGCV 74

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 18/153 (11%), Positives = 40/153 (26%), Gaps = 7/153 (4%)

Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSDVNTVCFGD 279
            +   + ++  S   R  V      C+ V+D+           L  L   + + +     
Sbjct: 49  NHGEVVCAVTISNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-L 106

Query: 280 ESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD 339
             G  +  G + +   +  +   T  I          C    I     V      +  + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 340 NYFLLRTFYSFMVHILFSGYLHNDHNHRCARKY 372
            + L              G    D ++   + +
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 92  NYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY 151
             +G       +  ++   ++     + +    S     +F+  G  FV+  + + +  +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292

Query: 152 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
               G  I +   + S    V    +S D +++V  S      + +V
Sbjct: 293 RTPYGASIFQSKESSS----VLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYS 287
           I    ++ D  ++    ++  +++Y+   NK      +  H   V  V +     + I +
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVT 68

Query: 288 GSDDNLCKV 296
              D    V
Sbjct: 69  CGTDRNAYV 77

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 14/84 (16%)

Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231
           ++  + + D+  +     +  VHI +        +  + E H+G              + 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNG-------------QVT 55

Query: 232 SLKFSTDGRELVAGSSDDCIYVYD 255
            + ++ D   +V   +D   YV+ 
Sbjct: 56  GVDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
           ++ D +         ++ IY+      +Q   L +     VT    +PD   +V      
Sbjct: 15  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSNRIVTCGTDR 73

Query: 192 IVHIVD 197
             ++  
Sbjct: 74  NAYVWT 79

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHL 284
                 + +   +   +  GS D  I++Y ++     ++ L AH   VN + +       
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PST 271

Query: 285 IYSGSDDNLCKVNSVL 300
           + S   D   K  +V+
Sbjct: 272 LVSSGADACIKRWNVV 287

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 2/89 (2%)

Query: 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291
            L  +  G ++   +    +Y   + +   +     H+           SG+   SG   
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGDVH 79

Query: 292 NLCKVNSVLLLTRSINPCNKYLFNPCNKY 320
              ++      T  +         P    
Sbjct: 80  GNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 10/59 (16%), Positives = 23/59 (38%)

Query: 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
           DG ++ + S+D  I ++++   K+   I   T   +       +   + S S +     
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181
            T  ++  S      ++ V+G   S ++I+D++ G  +Q        +  VT    + + 
Sbjct: 213 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN- 271

Query: 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241
             ++ +S    V + D+ +G               +    + GG    ++ ++ S     
Sbjct: 272 -FVITSSDDGTVKLWDLKTGEFIR-----------NLVTLESGGSGGVVWRIRASNTKLV 319

Query: 242 LVAGSSDDC----IYVYDLEAN 259
              GS +      + V D + +
Sbjct: 320 CAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 26/167 (15%)

Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
               DG   V+G   + IR++DVE G  I               + +      LV  +  
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNILVSGNAD 236

Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
             V I D+ +G           H         +  +                +  S D  
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV---------------ITSSDDGT 281

Query: 251 IYVYDLEANKL-----SLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292
           + ++DL+  +      +L        V  +     +  +   GS + 
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA-SNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279
               G  +V+GS D+ + V+     K    ++ HT  V +    D
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYS 287
            + ++        ++   S++   +Y+L + KL    +      + +V F  +   L+ +
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAA 340

Query: 288 GSDDNLCKV 296
              D    +
Sbjct: 341 VEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294
              +   ++ G+ D  I VYD    K  L++  H   V  + +    G ++ SGS D   
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTV 76

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (104), Expect = 8e-06
 Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 26/169 (15%)

Query: 94  SGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQI 148
           S R    + D   +   +  V+ P+ +         ++         AG         + 
Sbjct: 197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 256

Query: 149 RIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208
              +V+ G       L  S+    +         +   A    ++   DV +  +  + N
Sbjct: 257 SPINVDPGDYRMIIPLESSILI-YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN 315

Query: 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
                                +  L+ S D + ++    D  IY + LE
Sbjct: 316 --------------------NLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 7/106 (6%)

Query: 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163
              +           P++ +     V       + +    +   +  YDV+         
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR------- 308

Query: 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209
               ++  +TD  LS D++ ++       ++   +     E     
Sbjct: 309 KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 231 FSLKFS-TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
           F+  FS  DG  +   S     ++ D+      +  +     +  V  G ++      G+
Sbjct: 6   FAEDFSPLDGDLIAFVSRGQ-AFIQDVSGTY--VLKVPEPLRIRYVRRGGDTKVAFIHGT 62

Query: 290 DDN 292
            + 
Sbjct: 63  REG 65

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 7/173 (4%)

Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT---VTDTSLSPDQRHLVYAS 188
            S  G L   GF    ++I ++     +       S+      +     SP    L  A 
Sbjct: 192 ISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248
            S     + +             +      ++  +  +S  + SL F+  G  L +   D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFG---DESGHLIYSGSDDNLCKVNS 298
             +  +D++  +    +  H  D+         DE G  +      ++  +  
Sbjct: 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 363

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 14/84 (16%)

Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE------ANKLSLRILAHTSDVNTVCFG 278
            +   IFS+         V+ S D  + V+D +          S     H S ++ V   
Sbjct: 12  AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 279 D------ESGHLIYSGSDDNLCKV 296
                      L+ + S       
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLF 93

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 4e-05
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGH 283
           G++  I +L  S DG+ L +  ++  I  +D+     +      H + +  +    +   
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 284 LIYSG 288
              S 
Sbjct: 70  FTVSW 74

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 18/185 (9%), Positives = 43/185 (23%), Gaps = 11/185 (5%)

Query: 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176
             +        V   +  G   +    ++  +   D+  G  + +  L+       +   
Sbjct: 27  ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86

Query: 177 L--SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
              SPD + L        + +                ++D    S          I  L 
Sbjct: 87  AALSPDGKTLAIYESPVRLELTHFEVQP-----TRVALYDAETLSRRKAFEAPRQITMLA 141

Query: 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294
           ++ DG +L     D  +   +       +      S         +   +        + 
Sbjct: 142 WARDGSKLYGLGRDLHVMDPE---AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM 198

Query: 295 KVNSV 299
                
Sbjct: 199 ATPFY 203

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 20/193 (10%), Positives = 45/193 (23%), Gaps = 26/193 (13%)

Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
           + +++  +    + ++D     ++ +  +                          +  GR
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITI--------------ADAGPTPMVPMVAPGGR 46

Query: 241 EL-VAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLC 294
                 +  + +   DL   +   RI   T       +       +   L    S   L 
Sbjct: 47  IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE 106

Query: 295 KVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI 354
             +        + P    L++               I       D   L        V  
Sbjct: 107 LTHFE------VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD 160

Query: 355 LFSGYLHNDHNHR 367
             +G L  D   +
Sbjct: 161 PEAGTLVEDKPIQ 173

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/166 (10%), Positives = 38/166 (22%), Gaps = 14/166 (8%)

Query: 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVS----QFSADGSLFVAGFQASQIRIYDVERGWK 158
           D   M      +    P+    +  Y                           D++    
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214

Query: 159 IQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215
                   ++      +    +          +++P           +E         D 
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLE-------SFDL 267

Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
              ++          +S+  STDG  +  G +   +  YD E  + 
Sbjct: 268 EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 238 DGRELVAGSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295
           D ++     +D  I V+D+  +K      +         V         I S S D    
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 296 V 296
            
Sbjct: 322 F 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 27/131 (20%)

Query: 161 KDILAKS---LRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGL 216
           K+I+       R   T  S  P    + Y    S  V  +D G   +  +   T      
Sbjct: 6   KEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------ 59

Query: 217 DFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEANKLSLRIL-------- 266
                  G  S  + ++KFS     + L +G     + V+    +K S  +         
Sbjct: 60  -------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112

Query: 267 AHTSDVNTVCF 277
                ++ + +
Sbjct: 113 VLAGPISDISW 123

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 23/124 (18%)

Query: 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235
           +L     +++  +    +H+VDV S T   +     + D             FG  +   
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDT---VYKSCVMPDK------------FGPGTAMM 47

Query: 236 STDGREL-VAGSSDDCIYVYDLEANKL------SLRILAHTSDVNTVCFGDESGHLIYSG 288
           + D R   V  +    IY  DL+  K       S         + +       G  +Y+ 
Sbjct: 48  APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYAT 106

Query: 289 SDDN 292
            +  
Sbjct: 107 VNPT 110

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 19/246 (7%), Positives = 51/246 (20%), Gaps = 19/246 (7%)

Query: 47  LSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCH 106
           +S    E+           +H+  + P       +              R  +       
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DIL 164
                             +  Y                   +  +  +           +
Sbjct: 156 G--SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213

Query: 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224
           A+         +      +L     +   H  +    T      +    D        + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273

Query: 225 GYSF---------------GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269
              +                 + + F   G +L  G + + + V++ +  +    I    
Sbjct: 274 LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333

Query: 270 SDVNTV 275
            D++T 
Sbjct: 334 GDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 3/65 (4%), Positives = 17/65 (26%), Gaps = 1/65 (1%)

Query: 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDD 291
                    ++  +  + ++V D+ ++ +     +       T     ++       +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 292 NLCKV 296
                
Sbjct: 62  GDIYG 66

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 22/172 (12%), Positives = 51/172 (29%), Gaps = 8/172 (4%)

Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMS 190
             A     +     + + + DV     + K  +            ++PD R   V  +  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFG-PGTAMMAPDNRTAYVLNNHY 61

Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGRELVAGSSD 248
             ++ +D+ +      AN++ +   +  S         G  +++    T           
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 249 DCIYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDDNLCKVNS 298
             + V+       +  +        V  +   D+ G L  +G D     V +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLYVAGPDIYKMDVKT 172

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277
             S G++ L++  D +++V+G  D+ I ++D    +    +  HT  V  + +
Sbjct: 13  ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 14/128 (10%)

Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
            ++       L V+G   + IR++D+E G  ++     + L   +       D + +V  
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-----FDNKRIVSG 234

Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
           +    + + D+ +         T     L         +S  +F L+F  D  ++V+ S 
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EHSGRVFRLQF--DEFQIVSSSH 285

Query: 248 DDCIYVYD 255
           DD I ++D
Sbjct: 286 DDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 242 LVAGSSDDCIYVYDLE--------ANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDN 292
           +V+G+ D  I V+DL         A  L LR L  H+  V  + F       I S S D+
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDD 287

Query: 293 LCKV 296
              +
Sbjct: 288 TILI 291

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 13/154 (8%), Positives = 33/154 (21%), Gaps = 10/154 (6%)

Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
            +   +  G +      +   +           +              +       +   
Sbjct: 208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG-WQQVAYHRALDRIYLL 266

Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL--VAG 245
                       S  +        + D               I S+  S D + L     
Sbjct: 267 VDQRDEWRHKTASRFVV-------VLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319

Query: 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279
           + D  +Y++D E+ +    +         +   D
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRI---LAHTSDVNTVCFGDESG 282
           + +   + S  GR L     D  + + DL   + +    I       S   +   G E  
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 283 HLIYSGSDDNLCKV 296
           + I          +
Sbjct: 122 YAIAGAYWPPQYVI 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.36
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.13
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.05
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.91
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.76
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.74
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.71
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.61
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.5
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.34
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.57
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.36
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.83
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.64
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.6
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.42
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.97
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.91
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.83
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.47
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.45
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.21
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.85
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.18
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.15
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.97
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.93
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.82
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.67
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.94
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.6
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.46
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.31
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.76
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	84.34

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-34  Score=256.62  Aligned_cols=230  Identities=15%  Similarity=0.136  Sum_probs=197.8

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      ...+..+.+|..........+.+|...|++++|+|+|++||+|+.||+|+|||+.++...... ....|..+|.+++|+|
T Consensus        34 ~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~  112 (311)
T d1nr0a1          34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TIPVFSGPVKDISWDS  112 (311)
T ss_dssp             EEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EEECSSSCEEEEEECT
T ss_pred             EEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc-ccccccCccccccccc
Confidence            344556778888777777788999999999999999999999999999999999887543322 2456778999999999


Q ss_pred             CCCEEEEEeC--CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEEC
Q 017421          180 DQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDL  256 (372)
Q Consensus       180 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~  256 (372)
                      ++++|++++.  +..+++|++++++......                +|...|++++|+|++++ |++|+.|+.|++||+
T Consensus       113 d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~----------------~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1         113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLT----------------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             TSCEEEEEECCSSCSEEEEETTTCCBCBCCC----------------CCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             ccccccccccccccccccccccccccccccc----------------ccccccccccccccceeeecccccccccccccc
Confidence            9999999886  4569999999876543322                57779999999999875 788999999999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------------ccCCCCCeeEEEeccCCCeEEE
Q 017421          257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------------LTRSINPCNKYLFNPCNKYLII  323 (372)
Q Consensus       257 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------------~~~~~~~v~~~~~s~~g~~l~~  323 (372)
                      ++++....+..|...|+++.|+ |++++|++++.|+.|++||++.             ..+|...|++++|+|++++|++
T Consensus       177 ~~~~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t  255 (311)
T d1nr0a1         177 PPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  255 (311)
T ss_dssp             TTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccC-ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEE
Confidence            9999999999999999999999 8999999999999999999862             1257889999999999999998


Q ss_pred             EeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          324 YLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       324 ~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      ++      .|+.|++||+.+++.++.+..|
T Consensus       256 gs------~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         256 AS------ADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             EE------TTSEEEEEETTTTEEEEEEECC
T ss_pred             Ee------CCCeEEEEECCCCcEEEEEECC
Confidence            86      6899999999999999888765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-31  Score=238.20  Aligned_cols=248  Identities=18%  Similarity=0.230  Sum_probs=202.7

Q ss_pred             cccCCCCCccccceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEE
Q 017421           70 KEVPGKRHLPVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVA  141 (372)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  141 (372)
                      ...+...+......+.|.||...     |++.+.+   .+.|..+++|+.........+..|...|.+++|+|+++++++
T Consensus        35 ~~~~~~~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  114 (340)
T d1tbga_          35 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC  114 (340)
T ss_dssp             TTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEE
T ss_pred             hccCcccccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeee
Confidence            34444555667788899999884     5666643   556778999998888777888999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEE----EE--------------------------------------eeecccCCcceEEEEECC
Q 017421          142 GFQASQIRIYDVERGWKI----QK--------------------------------------DILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       142 ~~~dg~i~vwd~~~~~~~----~~--------------------------------------~~~~~~~~~~v~~~~~~~  179 (372)
                      |+.|+.+.+|+.......    ..                                      ......+...+....+.+
T Consensus       115 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (340)
T d1tbga_         115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP  194 (340)
T ss_dssp             EETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred             ecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc
Confidence            999999999997643110    00                                      000112333577888899


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  259 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  259 (372)
                      .+.++++++.|+.|++||+++++......                +|...|++++|+|++++|++|+.|+.|++||++..
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----------------~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREGMCRQTFT----------------GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccceeEEeecCceEEEEECCCCcEEEEEe----------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            99999999999999999999887654432                46779999999999999999999999999999998


Q ss_pred             eEEEEee--cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421          260 KLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISI  331 (372)
Q Consensus       260 ~~~~~~~--~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~  331 (372)
                      .....+.  .+...|.+++|+ +++++|++|+.||.|++||+.+      +.+|..+|++++|+|++++|++++      
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s------  331 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS------  331 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEEC-SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE------
T ss_pred             ccccccccccccCceEEEEEC-CCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc------
Confidence            8776654  466789999999 9999999999999999999873      457999999999999999999886      


Q ss_pred             eeceEEEee
Q 017421          332 YSPNILLDN  340 (372)
Q Consensus       332 ~d~~i~lw~  340 (372)
                      .|++|++||
T Consensus       332 ~Dg~v~iWd  340 (340)
T d1tbga_         332 WDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEC
T ss_pred             cCCEEEEeC
Confidence            689999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-30  Score=230.87  Aligned_cols=235  Identities=15%  Similarity=0.127  Sum_probs=196.2

Q ss_pred             ccCCCCcc--ccCCceeEeeeeeCCCCCc-----cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 017421           92 NYSGRGRF--SAADCCHMLSRYLPVNGPW-----PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL  164 (372)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  164 (372)
                      .|++.+.+  +++++.+++|++.......     ...+|.+.|.+++|+|++++|++|+.||.|++||+........ ..
T Consensus        58 ~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~-~~  136 (337)
T d1gxra_          58 TISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK-AE  136 (337)
T ss_dssp             EECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-EE
T ss_pred             EECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccc-cc
Confidence            45666654  5557788899876544332     2357899999999999999999999999999999876533222 22


Q ss_pred             cccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      ...|...+..+.|+|++..+++++.++.|++|++.+++......                +|...|.+++|++++..+++
T Consensus       137 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~----------------~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------------GHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc----------------cccccccccccccccccccc
Confidence            45677789999999999999999999999999999887543332                46679999999999999999


Q ss_pred             EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-----cCCCCCeeEEEeccCCC
Q 017421          245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-----TRSINPCNKYLFNPCNK  319 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~v~~~~~s~~g~  319 (372)
                      ++.|+.|++||+++++.+..+. |...|.+++|+ |++++|++++.|+.|++||++..     ..|...|++++|+|+|+
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccceeecccc-cccceEEEEEc-ccccccceeccccccccccccccccccccccccccceEEECCCCC
Confidence            9999999999999999877765 88999999999 99999999999999999999743     37888999999999999


Q ss_pred             eEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          320 YLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       320 ~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      +|++++      .|+.|++||+.+++.+..+.
T Consensus       279 ~l~s~s------~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         279 WFVSTG------KDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             EEEEEE------TTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEe------CCCeEEEEECCCCCEEEEcc
Confidence            999886      68999999999999887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-31  Score=233.15  Aligned_cols=227  Identities=18%  Similarity=0.222  Sum_probs=188.5

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++..+..   ...|..+|.+++|+|+++++++++.|+.+.+|+
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---EECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEE---EecccccEEeeEeeccceeeeeecccceeeccc
Confidence            45789999999999999999999999999999999999977665   456778999999999999999999999999999


Q ss_pred             CCCCceeeecce-eecccccc-----------eeccC-----------------CCCccccEEEEEEcCCCCEEEEEeCC
Q 017421          198 VGSGTMESLANV-TEIHDGLD-----------FSAAD-----------------DGGYSFGIFSLKFSTDGRELVAGSSD  248 (372)
Q Consensus       198 ~~~~~~~~~~~~-~~~~~~~~-----------~~~~~-----------------~~~h~~~i~~~~~sp~~~~l~s~s~d  248 (372)
                      ............ ...+....           .....                 ...+...+....+.+.+.++++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            765543211110 00010000           00000                 02355678889999999999999999


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc--------cCCCCCeeEEEeccCCCe
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL--------TRSINPCNKYLFNPCNKY  320 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~v~~~~~s~~g~~  320 (372)
                      +.|++||+++++++..+.+|...|++++|+ |++++|++|+.|+.|++||++..        ..+...|.+++|+|++++
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~-p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence            999999999999999999999999999999 99999999999999999999732        256678999999999999


Q ss_pred             EEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          321 LIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       321 l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      |++++      .|++|++||+.+++.+..+.+|.
T Consensus       285 l~~g~------~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         285 LLAGY------DDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EEEEE------TTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEEE------CCCEEEEEECCCCcEEEEEcCCC
Confidence            99886      68999999999999999999884

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-31  Score=241.94  Aligned_cols=209  Identities=12%  Similarity=0.098  Sum_probs=176.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  203 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  203 (372)
                      ..+|+|++|+|||++||+|+.||.|+||++.+++... ...+.+|..+|.+++|+|++++|++++.|+.|++||+.++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~-~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEE-EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEE-EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            4679999999999999999999999999998775332 334568999999999999999999999999999999987765


Q ss_pred             eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE----EEEeecCCCCeEEEEEeC
Q 017421          204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNTVCFGD  279 (372)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp  279 (372)
                      .......              +|...|.+++|+|+++.|++++.|+.|++|++.....    ......|...|.+++|+ 
T Consensus        86 ~~~~~~~--------------~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-  150 (371)
T d1k8kc_          86 KPTLVIL--------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH-  150 (371)
T ss_dssp             EEEEECC--------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC-
T ss_pred             ccccccc--------------cccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccc-
Confidence            4333221              3666899999999999999999999999999876542    23345688999999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEeccc------------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeece
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLL------------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPN  335 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~------------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~  335 (372)
                      |++++|++|+.|+.|++||+..                        ...|...|.+++|+|+|++|++++      .|+.
T Consensus       151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~------~d~~  224 (371)
T d1k8kc_         151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS------HDST  224 (371)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE------TTTE
T ss_pred             ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc------cCCc
Confidence            8999999999999999999751                        125677899999999999999886      6899


Q ss_pred             EEEeecccceEEEEEeeeE
Q 017421          336 ILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       336 i~lw~~~~~~~~~~~~~h~  354 (372)
                      |++||+.+++.+..+.+|.
T Consensus       225 i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         225 VCLADADKKMAVATLASET  243 (371)
T ss_dssp             EEEEEGGGTTEEEEEECSS
T ss_pred             ceEEeeecccceeeeeccc
Confidence            9999999999998887773

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-31  Score=238.51  Aligned_cols=225  Identities=12%  Similarity=0.057  Sum_probs=182.4

Q ss_pred             ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+.+..+.+|+.....  ....+.+|.++|.+++|+|++++|++|+.|++|+|||+.++..... ....+|...|+++.|
T Consensus        25 ~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~~~~~~~v~~i~~  103 (371)
T d1k8kc_          25 CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRW  103 (371)
T ss_dssp             ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc-ccccccccccccccc
Confidence            4455678888876543  3455789999999999999999999999999999999987754433 334567778999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421          178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  257 (372)
Q Consensus       178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~  257 (372)
                      +|+++.|++++.|+.|++|++.............            .+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus       104 ~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~------------~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_         104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIK------------KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC------------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ccccccceeecccCcceeeeeecccccccccccc------------cccccccccccccccccceeccccCcEEEEEeec
Confidence            9999999999999999999987765432221111            1467799999999999999999999999999975


Q ss_pred             CC------------------eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEE
Q 017421          258 AN------------------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYL  313 (372)
Q Consensus       258 ~~------------------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~  313 (372)
                      ..                  +.+.....|...|.+++|+ |++++|++++.|+.|++||+..      +..|..+|.+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~  250 (371)
T d1k8kc_         172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT  250 (371)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred             cCccccccccccccccccceeeeeeccCccCcEEEEEee-cccccccccccCCcceEEeeecccceeeeecccccceeee
Confidence            42                  3455667889999999999 8999999999999999999873      447888999999


Q ss_pred             eccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          314 FNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       314 ~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      |+|++++|+++       +|+.+++|.+....
T Consensus       251 fs~d~~~la~g-------~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         251 FITESSLVAAG-------HDCFPVLFTYDSAA  275 (371)
T ss_dssp             EEETTEEEEEE-------TTSSCEEEEEETTT
T ss_pred             ecCCCCEEEEE-------cCCceEEEEeeCCC
Confidence            99999999988       46666666554443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1e-29  Score=224.21  Aligned_cols=224  Identities=13%  Similarity=0.054  Sum_probs=179.3

Q ss_pred             cCCCCcc---ccCCceeEeeeeeCCCCC--ccccCCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeec
Q 017421           93 YSGRGRF---SAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILA  165 (372)
Q Consensus        93 ~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~  165 (372)
                      +++++.+   .+.|..+.+|+.......  ..+..|..+|.+++|+|++++|++++.  +..++||++++++....   .
T Consensus        66 ~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~---l  142 (311)
T d1nr0a1          66 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN---L  142 (311)
T ss_dssp             ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC---C
T ss_pred             EeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccc---c
Confidence            5666654   556778889988776654  346789999999999999999999875  45699999998765544   5


Q ss_pred             ccCCcceEEEEECCCCCE-EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          166 KSLRWTVTDTSLSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       166 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      .+|...|.+++|+|++++ |++|+.|+.|++||+++++......                +|..+|+++.|+|++++|++
T Consensus       143 ~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~----------------~~~~~i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         143 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG----------------EHTKFVHSVRYNPDGSLFAS  206 (311)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC----------------CCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccceeeecccccccccccccccccccccccc----------------cccccccccccCcccccccc
Confidence            678888999999999885 7889999999999999877544332                46779999999999999999


Q ss_pred             EeCCCeEEEEECCCCeEEEEee-------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCC-CCee
Q 017421          245 GSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSI-NPCN  310 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~-~~v~  310 (372)
                      ++.|+.|++||+.++.....+.       +|...|++++|+ |++++|++|+.||.|+|||+++.+      .+. ....
T Consensus       207 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s-~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~  285 (311)
T d1nr0a1         207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  285 (311)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccce
Confidence            9999999999999988777654       578899999999 999999999999999999987432      222 1223


Q ss_pred             EEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      .+.+.++++.|++++      .|+.|++||.+
T Consensus       286 ~~~~~~~~~~l~s~s------~dG~i~~wd~d  311 (311)
T d1nr0a1         286 QLGIIWTKQALVSIS------ANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECSSCEEEEE------TTCCEEEEETT
T ss_pred             EEEEEecCCEEEEEE------CCCEEEEEeCC
Confidence            344555566777665      58999999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.7e-29  Score=220.88  Aligned_cols=219  Identities=17%  Similarity=0.175  Sum_probs=171.8

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.||.+.|++++|+|++++|++|+.||.|++||+.++..+..  ....|...|++++|+|++++ ++++.|+.+++|+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~--~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~   82 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV--FPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP   82 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC--SSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence            45789999999999999999999999999999999998866654  23467888999999999874 5567799999999


Q ss_pred             CCCCceeeecceeec----ccccceeccCC--------------------CCccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 017421          198 VGSGTMESLANVTEI----HDGLDFSAADD--------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYV  253 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~----~~~~~~~~~~~--------------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i  253 (372)
                      ...............    ...+.+.++..                    ......+.+++|+|++++|++|+.|+.|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~  162 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV  162 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             cCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            865432211111111    11122222211                    012346788999999999999999999999


Q ss_pred             EECCCCeEEE-EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---------ccCCCCCeeEEEeccCCCeEEE
Q 017421          254 YDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---------LTRSINPCNKYLFNPCNKYLII  323 (372)
Q Consensus       254 wd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~v~~~~~s~~g~~l~~  323 (372)
                      ||+++++... ....|...|++++|+ |++++|++++.|+.|++||+..         +..|..+|++++|+|++++|++
T Consensus       163 ~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         163 YKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EEEETTEEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccceEE
Confidence            9998877543 344689999999999 8999999999999999999862         3467889999999999999998


Q ss_pred             EeeeeEEEeeceEEEeecccceE
Q 017421          324 YLILVISIYSPNILLDNYFLLRT  346 (372)
Q Consensus       324 ~~~~~~~~~d~~i~lw~~~~~~~  346 (372)
                      ++      .|+.|++||+.+++.
T Consensus       242 gs------~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         242 GS------LDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EE------TTSCEEEEETTCTTS
T ss_pred             Ec------CCCEEEEEECCCCCc
Confidence            86      689999999887643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-29  Score=224.00  Aligned_cols=222  Identities=14%  Similarity=0.135  Sum_probs=187.2

Q ss_pred             ccCCCCcc---ccCCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc
Q 017421           92 NYSGRGRF---SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK  166 (372)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  166 (372)
                      .+++++.+   .+.+..+.+|+......  ...+..|...+.+++|+|++.++++++.|+.|++|++.++.....   ..
T Consensus       104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~---~~  180 (337)
T d1gxra_         104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ---FQ  180 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---EC
T ss_pred             EEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cc
Confidence            34555543   44567788888654432  345678999999999999999999999999999999998866554   45


Q ss_pred             cCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       167 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      .|...|.+++|++++..+++++.|+.+++||+++++......                 |...|.+++|+|++++|++++
T Consensus       181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-----------------~~~~i~~l~~~~~~~~l~~~~  243 (337)
T d1gxra_         181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-----------------FTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----------------CSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccc-----------------cccceEEEEEcccccccceec
Confidence            677789999999999999999999999999999887643322                 445899999999999999999


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeE
Q 017421          247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYL  321 (372)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l  321 (372)
                      .|+.|++||+++++.. ....|...|++++|+ |++++|++++.||.|++||+....     .|...|.+++|+|++++|
T Consensus       244 ~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s-~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         244 ESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             TTSCEEEEETTSSCEE-EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred             cccccccccccccccc-cccccccccceEEEC-CCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEE
Confidence            9999999999988765 456799999999999 999999999999999999987433     578899999999999999


Q ss_pred             EEEeeeeEEEeeceEEEeec
Q 017421          322 IIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       322 ~~~~~~~~~~~d~~i~lw~~  341 (372)
                      ++++      .|++|++||+
T Consensus       322 ~t~s------~D~~I~vWdl  335 (337)
T d1gxra_         322 VTGS------GDKKATVYEV  335 (337)
T ss_dssp             EEEE------TTSCEEEEEE
T ss_pred             EEEe------CCCeEEEEEE
Confidence            9886      6899999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.3e-29  Score=224.95  Aligned_cols=236  Identities=20%  Similarity=0.210  Sum_probs=191.2

Q ss_pred             ccCCCCcc--ccCCceeEeeeeeCCCCCc------------------cccCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Q 017421           92 NYSGRGRF--SAADCCHMLSRYLPVNGPW------------------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY  151 (372)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  151 (372)
                      .|++++.+  .+.|+.+++|+........                  ....|...|++++|+|++++|++|+.||.|++|
T Consensus        69 ~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~  148 (388)
T d1erja_          69 KFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW  148 (388)
T ss_dssp             EECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccc
Confidence            35666654  4557788888875543222                  224577889999999999999999999999999


Q ss_pred             eCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEE
Q 017421          152 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF  231 (372)
Q Consensus       152 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  231 (372)
                      +...++.+..   ..+|...|.++.|++++..+++++.++.+++||..+........                 +.....
T Consensus       149 ~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----------------~~~~~~  208 (388)
T d1erja_         149 DIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-----------------IEDGVT  208 (388)
T ss_dssp             ETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----------------CSSCEE
T ss_pred             cccccccccc---cccccccccccccccccccccccccceeeeeeeccccccccccc-----------------cccccc
Confidence            9998876655   56788899999999999999999999999999999876543332                 112344


Q ss_pred             EEEEc-CCCCEEEEEeCCCeEEEEECCCCeEEEEee-------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-
Q 017421          232 SLKFS-TDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-  302 (372)
Q Consensus       232 ~~~~s-p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-  302 (372)
                      ++.++ +++++|++++.|+.|++||++++.....+.       +|...|++++|+ |++++|++++.|+.|++||++.. 
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC----
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-CCCCEEEEEECCCcEEEEeccCCc
Confidence            45554 578999999999999999999987766543       578899999999 99999999999999999998622 


Q ss_pred             -----------------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          303 -----------------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       303 -----------------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                                       ..|...|.+++|+|+|++|++++      .|+.|++||+.+++.+..+.+|.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~------~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS------KDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGCEEEEEE------TTSEEEEEETTTCCEEEEEECCS
T ss_pred             cccccccccccceeeecccccceEEEEEECCCCCEEEEEe------CCCEEEEEECCCCcEEEEEeCCC
Confidence                             25678899999999999999886      68999999999999999998883

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.7e-28  Score=212.16  Aligned_cols=245  Identities=18%  Similarity=0.206  Sum_probs=211.6

Q ss_pred             eeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 017421           84 KMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER  155 (372)
Q Consensus        84 ~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~  155 (372)
                      ..|.||...     |++.+.+   .+.|..+++|+.........+.+|...|.+++|+|++.+++++..++.+.+|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            456777663     4555543   45677899999988888888999999999999999999999999999999999887


Q ss_pred             CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE
Q 017421          156 GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF  235 (372)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  235 (372)
                      ......   ...|...+.++.|+|+++.+++++.|+.+++||++++.......                +|...+.+++|
T Consensus        91 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~  151 (317)
T d1vyhc1          91 FECIRT---MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----------------GHREWVRMVRP  151 (317)
T ss_dssp             SCEEEC---CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CCSSCEEEEEE
T ss_pred             cccccc---cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc----------------cCCCcceeeec
Confidence            755443   55677789999999999999999999999999999887644332                46668999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC--------------------CCEEEEEeCCCeEE
Q 017421          236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--------------------GHLIYSGSDDNLCK  295 (372)
Q Consensus       236 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~--------------------~~~l~s~~~dg~i~  295 (372)
                      +|++++|++++.|+.|++|++.+++....+..|...+.+++|+ ++                    +.++++++.|+.|+
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA-PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-CSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe-eccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            9999999999999999999999999999999999999999998 43                    35789999999999


Q ss_pred             EEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          296 VNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       296 vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                      +||+++      +..|...|.+++|+|++++|++++      .|+.|++||+.+++.+..+.+|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA------DDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE------TTTEEEEECCTTSCCCEEEECCS
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE------CCCeEEEEECCCCcEEEEEcCCC
Confidence            999874      447889999999999999999886      68999999999999999999884

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.2e-27  Score=208.81  Aligned_cols=213  Identities=18%  Similarity=0.166  Sum_probs=186.4

Q ss_pred             CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421          116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  195 (372)
Q Consensus       116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  195 (372)
                      ....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..   ...|...|.++.|+|++.+++++..++.+.+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~---~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCcEEEEeeeccccccccccccccccc
Confidence            3467899999999999999999999999999999999998876654   5578889999999999999999999999999


Q ss_pred             EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421          196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  275 (372)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  275 (372)
                      |+...........                +|...+.++.|+|+++.+++++.|+.+++||+++++....+.+|...+.++
T Consensus        86 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (317)
T d1vyhc1          86 WDFQGFECIRTMH----------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  149 (317)
T ss_dssp             EETTSSCEEECCC----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             ccccccccccccc----------------cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceee
Confidence            9988776533332                466789999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCC--------------------eEEEEeeeeE
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNK--------------------YLIIYLILVI  329 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~--------------------~l~~~~~~~~  329 (372)
                      +|+ +++.+|++++.|+.|++|+++.      +..+...+..+.|+|++.                    ++++++    
T Consensus       150 ~~~-~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  224 (317)
T d1vyhc1         150 RPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS----  224 (317)
T ss_dssp             EEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE----
T ss_pred             ecc-cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc----
Confidence            999 9999999999999999999873      347788899999988753                    344443    


Q ss_pred             EEeeceEEEeecccceEEEEEeeeE
Q 017421          330 SIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       330 ~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                        .|+.|++|+..+++.+..+.+|.
T Consensus       225 --~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         225 --RDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             --TTSEEEEEETTTTEEEEEEECCS
T ss_pred             --CCCEEEEEECCCCcEEEEEeCCC
Confidence              58999999999999999988873

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-27  Score=211.92  Aligned_cols=214  Identities=13%  Similarity=0.082  Sum_probs=171.2

Q ss_pred             cccCC-CCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEE-----EeeecccCCcceEEEEECCCCCEEEEEeC-
Q 017421          119 PVDQT-TSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQ-----KDILAKSLRWTVTDTSLSPDQRHLVYASM-  189 (372)
Q Consensus       119 ~~~~~-~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  189 (372)
                      .+.+| ...|++++|+|  ++++|++|+.||+|+|||+..+....     .......|..+|.+++|+++++++++++. 
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            45666 56799999998  57899999999999999986542111     11123456778999999999999988765 


Q ss_pred             -CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEee-
Q 017421          190 -SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRIL-  266 (372)
Q Consensus       190 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~-  266 (372)
                       ++.+.+|+.++++......                +|...|.+++|+|++.+ +++++.|+.|++||+.+.+....+. 
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVS----------------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECC----------------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             ccceEEEEeecccccceeee----------------ecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence             6789999999887644433                57779999999999865 6789999999999999887666654 


Q ss_pred             --cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEec---cCCCeEEEEeeeeEEEeece
Q 017421          267 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFN---PCNKYLIIYLILVISIYSPN  335 (372)
Q Consensus       267 --~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s---~~g~~l~~~~~~~~~~~d~~  335 (372)
                        .|...|++++|+|..+.+|++++.|+.|++||+++      +..|..++..+.|+   |+|++|++++      .|+.
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s------~D~~  274 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG------ADAT  274 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE------TTSE
T ss_pred             ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe------CCCe
Confidence              56778999999944689999999999999999873      34667777666665   7888988876      7999


Q ss_pred             EEEeecccceEEEEEeeeE
Q 017421          336 ILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       336 i~lw~~~~~~~~~~~~~h~  354 (372)
                      |+|||+.+++.++.+.+|.
T Consensus       275 i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         275 IRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             EEEEETTTTEEEEEEECCT
T ss_pred             EEEEECCCCCEEEEEEecC
Confidence            9999999999999887764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.9e-27  Score=213.90  Aligned_cols=223  Identities=18%  Similarity=0.180  Sum_probs=177.9

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC-
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-  178 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-  178 (372)
                      .+.+..+++|+.........+.+|...|.+++|++++..+++++.++.+++||..+......   ...+.. ...+.+. 
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~-~~~~~~~~  214 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT---LSIEDG-VTTVAVSP  214 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECSSC-EEEEEECS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc---cccccc-cccccccC
Confidence            45566788888877777777889999999999999999999999999999999998865544   223333 4445555 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421          179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  258 (372)
Q Consensus       179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~  258 (372)
                      +++++|++++.|+.|++||..++...........         ...+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~---------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE---------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccc---------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence            4889999999999999999998876443322111         1125778999999999999999999999999999976


Q ss_pred             Ce------------EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEE------e
Q 017421          259 NK------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYL------F  314 (372)
Q Consensus       259 ~~------------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~------~  314 (372)
                      +.            .......|...|.+++|+ +++++|++|+.||.|++||+++      +++|...|.+++      |
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~  364 (388)
T d1erja_         286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  364 (388)
T ss_dssp             -------------CEEEEEECCSSCEEEEEEC-GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CccccccccccccceeeecccccceEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc
Confidence            53            234455788999999999 9999999999999999999873      457899999887      4


Q ss_pred             ccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          315 NPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       315 s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +|++++|++++      .|++|++|++.
T Consensus       365 spd~~~l~s~s------~Dg~I~iW~~~  386 (388)
T d1erja_         365 GPEYNVFATGS------GDCKARIWKYK  386 (388)
T ss_dssp             CTTCEEEEEEE------TTSEEEEEEEE
T ss_pred             CCCCCEEEEEe------CCCEEEEEeee
Confidence            67899999886      68999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.4e-27  Score=208.45  Aligned_cols=236  Identities=15%  Similarity=0.100  Sum_probs=175.2

Q ss_pred             eeeeecccC-----ccCCCCcc---ccCCceeEeeeeeCCCCCccc-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 017421           83 VKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPV-DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV  153 (372)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~  153 (372)
                      .+++.||..     .+++++.+   .+.|..+++|+.........+ ..|...|.+++|+|++++ ++++.|+.+++|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEecc
Confidence            456677765     34666544   456678889987666555555 479999999999999985 45667899999997


Q ss_pred             CCCeE-------------EEEee------------------------ecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          154 ERGWK-------------IQKDI------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       154 ~~~~~-------------~~~~~------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      .....             .....                        ........+.+++|+|++++|++++.||.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            53210             00000                        000122357788999999999999999999999


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE---EEeecCCCCeE
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVN  273 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~  273 (372)
                      |++++........               .|...|++++|+|++++|++++.|+.|++||+.++...   ..+..|...|+
T Consensus       164 d~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~  228 (299)
T d1nr0a2         164 KLSGASVSEVKTI---------------VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA  228 (299)
T ss_dssp             EEETTEEEEEEEE---------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             ccccccccccccc---------------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9987765332221               25568999999999999999999999999999877543   34557889999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEeccccc---------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          274 TVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +++|+ |++++|++|+.||.|++||+++..         .+...+..+.| +++++|++++      .|++|++||+.
T Consensus       229 ~l~~s-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s------~D~~i~iWdl~  298 (299)
T d1nr0a2         229 CVSWS-PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAG------QDSNIKFWNVP  298 (299)
T ss_dssp             EEEEC-TTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEE------TTSCEEEEECC
T ss_pred             ccccc-ccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEe------CCCEEEEEecc
Confidence            99999 999999999999999999987432         23445666655 5567777775      69999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-26  Score=210.56  Aligned_cols=226  Identities=11%  Similarity=0.036  Sum_probs=163.5

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE-------EE------------------------Eeeec--
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-------IQ------------------------KDILA--  165 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------~~------------------------~~~~~--  165 (372)
                      ..++|.+.|+++++++  +++++++.|++|+|||..+...       ..                        .....  
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3468999999999864  6899999999999998643210       00                        00000  


Q ss_pred             -----------------------------ccCCcceEEEEECCC-----CCEEEEEeCCCeEEEEECCCCceeeeccee-
Q 017421          166 -----------------------------KSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGSGTMESLANVT-  210 (372)
Q Consensus       166 -----------------------------~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-  210 (372)
                                                   ..+...+..++|.++     +.++++++.||.+++|++............ 
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence                                         011123445666654     457888999999999998543211110000 


Q ss_pred             -ecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe------ecCCCCeEEEEEeCCCCC
Q 017421          211 -EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI------LAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       211 -~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~sp~~~~  283 (372)
                       ...............+...+.+++|+|++ +|++|+.|++|++||+.+++++..+      .+|..+|.+++|+ |+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~  244 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGS  244 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTT
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc-cccc
Confidence             00000011111122355578999999997 8899999999999999999876654      3688999999999 9999


Q ss_pred             EEEEEeCCC---eEEEEeccc-------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          284 LIYSGSDDN---LCKVNSVLL-------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       284 ~l~s~~~dg---~i~vwd~~~-------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +|++|+.|+   .|++||+++                   +.+|...|++++|+|+|++|++++      .|++|++||+
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s------~D~~v~vWd~  318 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG------WDGKLRFWDV  318 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE------TTSEEEEEET
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC------CCCEEEEEEC
Confidence            999999887   499999863                   236899999999999999999887      7999999999


Q ss_pred             ccceEEEEEeeeE
Q 017421          342 FLLRTFYSFMVHI  354 (372)
Q Consensus       342 ~~~~~~~~~~~h~  354 (372)
                      .+++.+..|.+|.
T Consensus       319 ~~g~~~~~l~gH~  331 (393)
T d1sq9a_         319 KTKERITTLNMHC  331 (393)
T ss_dssp             TTTEEEEEEECCG
T ss_pred             CCCCEEEEECCcC
Confidence            9999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.8e-26  Score=201.03  Aligned_cols=237  Identities=13%  Similarity=0.124  Sum_probs=180.6

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  179 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (372)
                      .+.|..+++|+....+....+.+|.+.|++++|+|+ .+|++|+.|+.|++|+........... ...+........+.+
T Consensus        29 gs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~  106 (355)
T d1nexb2          29 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYK  106 (355)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEEEEET
T ss_pred             EeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc-ccccccccccccccc
Confidence            456678999998877777888999999999999985 579999999999999999886655433 333344566778889


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecceee--------------------c----------ccccceeccC-------
Q 017421          180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTE--------------------I----------HDGLDFSAAD-------  222 (372)
Q Consensus       180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------------~----------~~~~~~~~~~-------  222 (372)
                      ++..+++++.|+.|++||+.+...........                    .          ..........       
T Consensus       107 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW  186 (355)
T ss_dssp             TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeee
Confidence            99999999999999999997654321110000                    0          0000000000       


Q ss_pred             ----------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 017421          223 ----------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN  292 (372)
Q Consensus       223 ----------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg  292 (372)
                                ..++...+.++.|+|++.++++++.|+.|++||++++..+..+.+|...|.+++++   +++|++++.||
T Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~---~~~l~~~~~dg  263 (355)
T d1nexb2         187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAAADG  263 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC---SSEEEEECTTS
T ss_pred             ecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc---cceeeeeeccc
Confidence                      12466788899999999999999999999999999999999999999999999986   46999999999


Q ss_pred             eEEEEeccccc----CCCCCeeEE-EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421          293 LCKVNSVLLLT----RSINPCNKY-LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY  348 (372)
Q Consensus       293 ~i~vwd~~~~~----~~~~~v~~~-~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~  348 (372)
                      .|++||++...    .|...+..+ .+++++++++++       .|+.|++||+.+++.++
T Consensus       264 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-------~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         264 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-------SENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-------ETTEEEEEETTTCCBCC
T ss_pred             ccccccccccceecccccCCceEEEEEcCCCCEEEEE-------eCCEEEEEECCCCCEEE
Confidence            99999997432    455555554 567888888777       48899999999998775

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-25  Score=195.72  Aligned_cols=221  Identities=15%  Similarity=0.182  Sum_probs=165.7

Q ss_pred             eCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC
Q 017421          112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  191 (372)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  191 (372)
                      -+.+....+++|.+.|.+ +++++|++||+|+.||+|+|||+.+++.+..   ..+|...|.+++|+|+  +|++++.|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~---~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCCEEEEEeCCC--ccccceecc
Confidence            344556778999999865 4677899999999999999999999877665   5688889999999874  899999999


Q ss_pred             eEEEEECCCCceeeecceeecc--------------------------cc---------------------cceeccCC-
Q 017421          192 IVHIVDVGSGTMESLANVTEIH--------------------------DG---------------------LDFSAADD-  223 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~--------------------------~~---------------------~~~~~~~~-  223 (372)
                      .+++|+................                          .+                     .......+ 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            9999998665432211100000                          00                     00000000 


Q ss_pred             ----------------CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEE
Q 017421          224 ----------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS  287 (372)
Q Consensus       224 ----------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s  287 (372)
                                      .+|...+.  .+++++.++++++.||.|++||++.++++..+..|...+.+++++   +++|++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s  232 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVS  232 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEE
T ss_pred             eEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC---CCEEEE
Confidence                            23444444  445578899999999999999999999999999999999998886   369999


Q ss_pred             EeCCCeEEEEeccccc---------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          288 GSDDNLCKVNSVLLLT---------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       288 ~~~dg~i~vwd~~~~~---------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      ++.|+.|++||+....         .|...+.++.++  ++++++++      .|++|++||+.+++.++.+.
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s------~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS------DDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE------TTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEc------CCCEEEEEECCCCCEEEEEe
Confidence            9999999999986322         345566666554  56787775      69999999999999988775

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1e-25  Score=199.58  Aligned_cols=219  Identities=9%  Similarity=-0.021  Sum_probs=167.3

Q ss_pred             ccCCceeEeeeeeCCCCCcc--------ccCCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeecccCC
Q 017421          100 SAADCCHMLSRYLPVNGPWP--------VDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLR  169 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~  169 (372)
                      .+.|..+++|+.........        +..|.++|.+++|++++++|++++.  ++.+.+|+.+++..+..   ..+|.
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~  159 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE---VSGHS  159 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE---CCSCS
T ss_pred             EeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee---eeecc
Confidence            45667888998865543322        3568899999999999999987754  67899999998876665   56788


Q ss_pred             cceEEEEECCCCCE-EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeC
Q 017421          170 WTVTDTSLSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS  247 (372)
Q Consensus       170 ~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~  247 (372)
                      ..|.+++|+|++.+ +++++.|+.+++||....+........             .+|...|.+++|+|+ +.+|++++.
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~-------------~~~~~~v~~v~~~pd~~~~l~s~~~  226 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-------------HKQGSFVRDVEFSPDSGEFVITVGS  226 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-------------SCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             cccccccccccccceEEEeecccccccccccccccceecccc-------------cCCCCccEEeeeccccceecccccc
Confidence            89999999998875 678899999999999876643332211             146678999999997 688999999


Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCeEEEEEeC--CCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEE--Eec
Q 017421          248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKY--LFN  315 (372)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~--~~s  315 (372)
                      |+.|++||+++++.+..+.+|..++.++.|++  +++++|++++.|+.|+|||+++.+        .+...+..+  .|.
T Consensus       227 d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (325)
T d1pgua1         227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT  306 (325)
T ss_dssp             TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred             ccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEEC
Confidence            99999999999999999998887765544432  588999999999999999987322        233334444  444


Q ss_pred             cCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          316 PCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       316 ~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +++ +|++++      .|+.|++||+
T Consensus       307 ~~~-~l~s~s------~dg~i~vwdl  325 (325)
T d1pgua1         307 GNG-RIISLS------LDGTLNFYEL  325 (325)
T ss_dssp             ETT-EEEEEE------TTSCEEEEET
T ss_pred             CCC-EEEEEE------CCCEEEEEEC
Confidence            444 455554      5889999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1e-26  Score=201.77  Aligned_cols=202  Identities=14%  Similarity=0.096  Sum_probs=148.0

Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421          118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  197 (372)
Q Consensus       118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  197 (372)
                      ..+.+|..+|++++|+|    |++|+.||+|++||+.++        ...|...|.++.++++. .+++++.|+.+++|+
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence            35678888888888887    888888888888887653        23566678888877654 467777777777776


Q ss_pred             CCCC----------------------------------ceeeecceeecccccceecc----------------------
Q 017421          198 VGSG----------------------------------TMESLANVTEIHDGLDFSAA----------------------  221 (372)
Q Consensus       198 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~----------------------  221 (372)
                      +...                                  .........  .....+.+.                      
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~  151 (287)
T d1pgua2          74 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN--SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL  151 (287)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred             ccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc--ceeeeeeccCcceeeeccccceeeeeecccc
Confidence            5322                                  111110000  000001100                      


Q ss_pred             -----CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEEeC---------CCCCEEE
Q 017421          222 -----DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGD---------ESGHLIY  286 (372)
Q Consensus       222 -----~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp---------~~~~~l~  286 (372)
                           ....|...+++++|+|++.+|++|+.||.|++||+.+++... .+..|...|.+++|+|         .++.+|+
T Consensus       152 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~  231 (287)
T d1pgua2         152 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA  231 (287)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred             ceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeE
Confidence                 013467889999999999999999999999999999988654 3568999999999984         3457899


Q ss_pred             EEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          287 SGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       287 s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      +|+.|++|++||++.       +.+|...|++++|+|++.++.++       .|+.|++|++
T Consensus       232 sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g-------~D~~v~iW~i  286 (287)
T d1pgua2         232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSG-------ADACIKRWNV  286 (287)
T ss_dssp             EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEE-------TTSCEEEEEE
T ss_pred             eecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEE-------CCCeEEEEEE
Confidence            999999999999863       34789999999999998655444       6899999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.4e-25  Score=197.63  Aligned_cols=228  Identities=12%  Similarity=0.035  Sum_probs=169.1

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeEEEEE
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD  197 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd  197 (372)
                      ..++|...|++|+|+|++++||+|+.||+|+|||+..+..........+|..+|.+++|+|+ +.+|++|+.||.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            45789999999999999999999999999999999776544444445578889999999986 45789999999999999


Q ss_pred             CCCCceeeecceeecccc----------cceecc-----------------------CCCCccccEEEEEEcCCCCEEEE
Q 017421          198 VGSGTMESLANVTEIHDG----------LDFSAA-----------------------DDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~----------~~~~~~-----------------------~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      +..+..............          ......                       ...........+.+.+++..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            987654332221111000          000000                       00111223345566778889999


Q ss_pred             EeCCCeEEEEECCCCeEE---EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc--------------------
Q 017421          245 GSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL--------------------  301 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--------------------  301 (372)
                      ++.|+.|++||+...+..   .....+...+.+..+.|.++..+++++.||.+.+|+...                    
T Consensus       166 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T d1yfqa_         166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence            999999999999766432   223345556777777767889999999999999998751                    


Q ss_pred             -ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          302 -LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       302 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                       ...|...|++++|+|++++|++++      .|+.|++||+.+++.+..+..
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~------~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAG------SDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEE------TTSCEEEEETTTTEEEEECCC
T ss_pred             CCCcccccceeEEecCCccEEEEEC------CCCEEEEEECCCCcEEEEecC
Confidence             124566789999999999999886      699999999999998887743

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.6e-25  Score=201.15  Aligned_cols=211  Identities=17%  Similarity=0.072  Sum_probs=159.2

Q ss_pred             CCceeEeeeeeCCCCCccc----------cCCCCceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCC----------
Q 017421          102 ADCCHMLSRYLPVNGPWPV----------DQTTSRAYVSQFSADG-----SLFVAGFQASQIRIYDVERG----------  156 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~----------  156 (372)
                      .+..+.+|..........+          ..+...++.++|.+++     .++++++.||.+++|++...          
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            3556677766544332221          2355678888887763     67899999999999997432          


Q ss_pred             -----eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEE
Q 017421          157 -----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF  231 (372)
Q Consensus       157 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  231 (372)
                           ...........+...+.+++|+|++ +|++|+.||.|++||+.+++..........          ..+|..+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~----------l~~h~~~V~  235 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS----------MINNSNSIR  235 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-------------CCCCCEE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccc----------cccccceEE
Confidence                 0111112223444568899999997 889999999999999998876443332211          125888999


Q ss_pred             EEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEEee-------------cCCCCeEEEEEeCCCCCEEEEEeCCCeEE
Q 017421          232 SLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRIL-------------AHTSDVNTVCFGDESGHLIYSGSDDNLCK  295 (372)
Q Consensus       232 ~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~  295 (372)
                      +++|+|+|++|++|+.|+   .|++||+++++++..+.             +|...|++++|+ |++++|++|+.|++|+
T Consensus       236 ~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs-pd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGWDGKLR  314 (393)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC-SSSSEEEEEETTSEEE
T ss_pred             EcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC-CCCCeeEEECCCCEEE
Confidence            999999999999999886   49999999998877764             799999999999 9999999999999999


Q ss_pred             EEeccc------ccCCCCCee----EEEeccCCCeEEEE
Q 017421          296 VNSVLL------LTRSINPCN----KYLFNPCNKYLIIY  324 (372)
Q Consensus       296 vwd~~~------~~~~~~~v~----~~~~s~~g~~l~~~  324 (372)
                      +||+++      +.+|...|.    .++|+|++..++++
T Consensus       315 vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         315 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             EEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            999974      457777664    58899999887655

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-24  Score=186.16  Aligned_cols=202  Identities=22%  Similarity=0.239  Sum_probs=148.2

Q ss_pred             cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      ....|...|+|++  +|+++||+|+.||+|+|||+.+++.+..   +.+|..+|++++|  ++++|++|+.|+.|++|++
T Consensus        10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~---l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEE---EecCCCCEeeeec--ccceeeccccccccccccc
Confidence            3456788899865  5799999999999999999999877665   5688889999887  5789999999999999998


Q ss_pred             CCCceeeecceeeccc-------cc-----------c--------------eecc------------------CC-----
Q 017421          199 GSGTMESLANVTEIHD-------GL-----------D--------------FSAA------------------DD-----  223 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~-------~~-----------~--------------~~~~------------------~~-----  223 (372)
                      ..+.............       ..           .              +..+                  .+     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV  162 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceee
Confidence            7765432221100000       00           0              0000                  00     


Q ss_pred             ------------CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421          224 ------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       224 ------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d  291 (372)
                                  .++...+..+.++  +..+++++.|+.|++||+++.+.+..+.+|...+..  ++ +++.+|++++.|
T Consensus       163 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~-~~~~~l~sg~~d  237 (293)
T d1p22a2         163 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IR-FDNKRIVSGAYD  237 (293)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EE-CCSSEEEEEETT
T ss_pred             ecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--cc-ccceEEEEEcCC
Confidence                        1344455555554  568889999999999999988888888888777765  44 677899999999


Q ss_pred             CeEEEEecc---------------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee
Q 017421          292 NLCKVNSVL---------------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN  340 (372)
Q Consensus       292 g~i~vwd~~---------------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~  340 (372)
                      |.|++||++               ++.+|...|++++|+  +.+|++++      .|++|++||
T Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s------~Dg~i~iWD  293 (293)
T d1p22a2         238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS------HDDTILIWD  293 (293)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECC------SSSEEEEEC
T ss_pred             CEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEe------cCCEEEEeC
Confidence            999999975               234688899999985  56777775      688888887

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-24  Score=188.45  Aligned_cols=237  Identities=16%  Similarity=0.164  Sum_probs=170.5

Q ss_pred             ccceeeeecccCcc----CCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421           80 VSTVKMLAGREGNY----SGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD  152 (372)
Q Consensus        80 ~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd  152 (372)
                      ..+.++|+||....    +..+.+   .+.|..+++|+....+....+.+|...|.+++|+|+  +|++|+.|+.+++|+
T Consensus         6 ~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            34556677777532    222222   556678999998887777888999999999999874  899999999999999


Q ss_pred             CCCCeEEEEee---------------------------------------------------------------------
Q 017421          153 VERGWKIQKDI---------------------------------------------------------------------  163 (372)
Q Consensus       153 ~~~~~~~~~~~---------------------------------------------------------------------  163 (372)
                      ...........                                                                     
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            76542211100                                                                     


Q ss_pred             --------ecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE
Q 017421          164 --------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF  235 (372)
Q Consensus       164 --------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  235 (372)
                              ...+|.  .....+.+++.++++++.||.|++||++.++......                +|...+.++++
T Consensus       164 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~----------------~~~~~v~~~~~  225 (342)
T d2ovrb2         164 PETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT----------------GHQSLTSGMEL  225 (342)
T ss_dssp             GGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC----------------CCCSCEEEEEE
T ss_pred             cccceeeEEEcCcc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEec----------------ccccceeEEec
Confidence                    000111  1233344567788888889999999988876543332                46668888877


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc---------
Q 017421          236 STDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------  303 (372)
Q Consensus       236 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------  303 (372)
                      ++  ++|++++.|+.|++||+...+....+..   |...+.++.++   ++++++|+.||.|++||+++.+         
T Consensus       226 ~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~  300 (342)
T d2ovrb2         226 KD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE  300 (342)
T ss_dssp             ET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred             CC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEeccc
Confidence            64  6999999999999999999888777764   45566666654   5799999999999999997432         


Q ss_pred             --CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421          304 --RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL  343 (372)
Q Consensus       304 --~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~  343 (372)
                        +|...|++++|+|++.+++++....  ..+..|++||+..
T Consensus       301 ~~~~~~~v~~v~~s~~~~~la~g~~dG--t~~~~l~~~Df~~  340 (342)
T d2ovrb2         301 SGGSGGVVWRIRASNTKLVCAVGSRNG--TEETKLLVLDFDV  340 (342)
T ss_dssp             TGGGTCEEEEEEECSSEEEEEEECSSS--SSCCEEEEEECCC
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCC--CCeeEEEEEeCCC
Confidence              4667899999999999999885210  0223589998753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.6e-23  Score=185.48  Aligned_cols=213  Identities=16%  Similarity=0.126  Sum_probs=162.1

Q ss_pred             ccccCCCCce-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          118 WPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       118 ~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      ..+++|...| .|++|  ++++|++|+.||+|+|||+.+++.+..   ..+|..+|.+++|+|+ .+|++++.|+.|++|
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~---l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE---EECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE---EECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            4578998876 55554  688999999999999999999977665   5688899999999985 589999999999999


Q ss_pred             ECCCCceeeecceeecc----------cc-cceeccCC----------------------------------------CC
Q 017421          197 DVGSGTMESLANVTEIH----------DG-LDFSAADD----------------------------------------GG  225 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~----------~~-~~~~~~~~----------------------------------------~~  225 (372)
                      ++...............          .+ .......+                                        ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            99877653222111100          00 00000000                                        01


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----
Q 017421          226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----  301 (372)
Q Consensus       226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----  301 (372)
                      |...+  ..+.+++++++++..|+.|++||+++++.+....++...+.++.|+ +++.++++++.|+.|++||+++    
T Consensus       160 ~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         160 HMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             CSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccc--cccccccceeeeecccceeeeeecccccceeeeecccccccccccc-ccceeeecccccceEEeeeccccccc
Confidence            12222  2345567888999999999999999998888888888999999999 9999999999999999999873    


Q ss_pred             --ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421          302 --LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF  347 (372)
Q Consensus       302 --~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~  347 (372)
                        +..|...|.+++|++  ++|++++      .|+.|++||+.++...
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~------~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAA------ADGSIRGWDANDYSRK  276 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEEC------TTSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccc--ceeeeee------ccccccccccccccee
Confidence              457889999999875  6787776      6899999999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=5.8e-24  Score=189.55  Aligned_cols=172  Identities=16%  Similarity=0.071  Sum_probs=136.3

Q ss_pred             ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421          104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ  181 (372)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (372)
                      ..+.+|....  ......+|...|.+++|+|||++|++++.+.  .|++||+.++....    ...|...|.+++|+|++
T Consensus        24 g~v~v~d~~~--~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~----~~~~~~~v~~~~~spdg   97 (360)
T d1k32a3          24 GQAFIQDVSG--TYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK----FEENLGNVFAMGVDRNG   97 (360)
T ss_dssp             TEEEEECTTS--SBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE----CCCCCCSEEEEEECTTS
T ss_pred             CeEEEEECCC--CcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE----eeCCCceEEeeeecccc
Confidence            3455554432  2233347999999999999999998766543  79999999874432    55777889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe----------CCCeE
Q 017421          182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCI  251 (372)
Q Consensus       182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s----------~dg~i  251 (372)
                      ++|++++.++.+++|++.++.......                .|...+.+++|+|+|++|+.+.          .++.+
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          98 KFAVVANDRFEIMTVDLETGKPTVIER----------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE----------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             cccceeccccccccccccccceeeeee----------------cccccccchhhccceeeeeeeccccccceeeccccce
Confidence            999999999999999999887654433                2445788999999999998654          34569


Q ss_pred             EEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421          252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      ++||+.+++.. .+..+...+..++|+ |+|+.|++++.++.+++||.
T Consensus       162 ~v~d~~~~~~~-~~~~~~~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         162 HVYDMEGRKIF-AATTENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEEETTTTEEE-ECSCSSSBEEEEEEC-TTSCEEEEEESCCCCCEECS
T ss_pred             eeeccccCcee-eeccccccccccccc-CCCCEEEEEeCCCceEcccc
Confidence            99999988764 444577788999999 99999999999999998874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=1.9e-22  Score=179.55  Aligned_cols=186  Identities=17%  Similarity=0.136  Sum_probs=153.0

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC--eEEEEECCCCceee
Q 017421          129 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMES  205 (372)
Q Consensus       129 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~  205 (372)
                      .-.||| ||+++|+++. |.|++||+.++....    . .|...|.+++|+|||++|++++.+.  .|++||.+++....
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~   80 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK   80 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE
Confidence            467999 9999999875 799999998875543    2 5777899999999999998776553  79999999887654


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  285 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l  285 (372)
                      ..                 .|...+.+++|+|+|++|++++.++.+++|++.+++....+..|...+.+++|+ |+|++|
T Consensus        81 ~~-----------------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l  142 (360)
T d1k32a3          81 FE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS-DNSRFI  142 (360)
T ss_dssp             CC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-TTSCEE
T ss_pred             ee-----------------CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhc-cceeee
Confidence            33                 366689999999999999999999999999999999988888899999999999 999999


Q ss_pred             EEEe----------CCCeEEEEecccc-----cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          286 YSGS----------DDNLCKVNSVLLL-----TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       286 ~s~~----------~dg~i~vwd~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +.+.          .++.+++||+...     ..+...+..++|+|+|++|+.++      .++.+.+|+....
T Consensus       143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s------~~~~~~~~d~~~~  210 (360)
T d1k32a3         143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS------YRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE------SCCCCCEECSSSS
T ss_pred             eeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe------CCCceEccccccc
Confidence            8653          3456999999743     35667788999999999999775      3556666665444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=4.2e-22  Score=182.71  Aligned_cols=252  Identities=10%  Similarity=-0.021  Sum_probs=174.8

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--EeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~  177 (372)
                      ...+..+.+|+....+....+..| ..+..++|||||++|++++.|+.|++||+.+++...  ......+|...+.++.|
T Consensus        38 ~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (426)
T d1hzua2          38 LRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK  116 (426)
T ss_dssp             ETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred             EcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence            345678889988877766777766 469999999999999999999999999998875332  22333455566778889


Q ss_pred             CCCCCEEEEE-eCCCeEEEEECCCCceeeecceee-cccccce-----------eccCC---------------------
Q 017421          178 SPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTE-IHDGLDF-----------SAADD---------------------  223 (372)
Q Consensus       178 ~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~---------------------  223 (372)
                      +|||++++++ ..++.+.+||..++.......... ......+           ++...                     
T Consensus       117 spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~  196 (426)
T d1hzua2         117 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  196 (426)
T ss_dssp             TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred             cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence            9999987655 578999999999887644332111 0000001           00000                     


Q ss_pred             ------CCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe------------------------------------
Q 017421          224 ------GGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK------------------------------------  260 (372)
Q Consensus       224 ------~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~------------------------------------  260 (372)
                            .++...+..+.|+|++++++++.. +..+.+++..+++                                    
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  276 (426)
T d1hzua2         197 NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDG  276 (426)
T ss_dssp             SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTC
T ss_pred             ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCc
Confidence                  123456678899999988776653 3446666555433                                    


Q ss_pred             ------------------EEEEeecCCCCeEEEEEeCCCCCEEEE-------EeCCCeEEEEeccccc------------
Q 017421          261 ------------------LSLRILAHTSDVNTVCFGDESGHLIYS-------GSDDNLCKVNSVLLLT------------  303 (372)
Q Consensus       261 ------------------~~~~~~~~~~~v~~~~~sp~~~~~l~s-------~~~dg~i~vwd~~~~~------------  303 (372)
                                        ....+.+|...+..++|+ |++++|++       ++.|++|+|||+.+++            
T Consensus       277 ~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s-Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~  355 (426)
T d1hzua2         277 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH-PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA  355 (426)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC-TTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH
T ss_pred             eEEEeeccccccccccceEeEEEecCCCceeEEEcC-CCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhc
Confidence                              333455677788999999 99999995       4567899999987432            


Q ss_pred             ---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421          304 ---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI  354 (372)
Q Consensus       304 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~  354 (372)
                         .+...|..++|||||++++++.-. ....++.|++||..+++......++.
T Consensus       356 ~~~~~~~rv~~~~fSpDGk~i~vs~~~-~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         356 DLGEGAKRVVQPEYNKRGDEVWFSVWN-GKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             CCCSSCCCEEEEEECSSSSEEEEEECC-CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             ccCCCCccEEEEEECCCCCEEEEEEec-CCCCCCeEEEEECCCCeEEEEECCCC
Confidence               345668999999999987654200 00136789999999999888776664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.2e-20  Score=165.44  Aligned_cols=220  Identities=10%  Similarity=0.012  Sum_probs=142.8

Q ss_pred             ccCCceeEeeeeeCCCCCccc---cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPV---DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  175 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  175 (372)
                      .+.|..+++|++........+   .+|..+|.+++|+|++ .+|++|+.|+.|++|++..........  ..+.......
T Consensus        29 ~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~--~~~~~~~~~~  106 (342)
T d1yfqa_          29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT--NNEANLGICR  106 (342)
T ss_dssp             EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB--SCCCCSCEEE
T ss_pred             EECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccc--cccccccccc
Confidence            556788999998776543333   3699999999999864 578999999999999998754333211  1111122233


Q ss_pred             EECCCCCEEEEEeCCCeEEEE------------------------------------------------ECCCCceeeec
Q 017421          176 SLSPDQRHLVYASMSPIVHIV------------------------------------------------DVGSGTMESLA  207 (372)
Q Consensus       176 ~~~~~~~~l~~~~~dg~i~vw------------------------------------------------d~~~~~~~~~~  207 (372)
                      .+.++...+++++.++.+++|                                                |+.........
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  186 (342)
T d1yfqa_         107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT  186 (342)
T ss_dssp             EEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCE
T ss_pred             ccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccccee
Confidence            333344444555555555555                                                44433321111


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeE---------EEE------eecCCCC
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCIYVYDLEANKL---------SLR------ILAHTSD  271 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-p~~~~l~s~s~dg~i~iwd~~~~~~---------~~~------~~~~~~~  271 (372)
                      ...             ..+...+.+..+. +++..+++++.||.+.+|+......         ...      ...|...
T Consensus       187 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
T d1yfqa_         187 IEE-------------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP  253 (342)
T ss_dssp             EEE-------------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred             eee-------------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc
Confidence            110             0122345555554 4678899999999999999864321         111      1246678


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY  341 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~  341 (372)
                      |++++|+ |++++|++|+.||.|++||+++.+     .....+..++|+|+|+++++++      -|..+++|..
T Consensus       254 v~~l~~s-p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~------sdd~~~~~~~  321 (342)
T d1yfqa_         254 VNSIEFS-PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT------SDDTFKTNAA  321 (342)
T ss_dssp             EEEEEEC-TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE------ECTHHHHCSS
T ss_pred             ceeEEec-CCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE------cCCcEEEeee
Confidence            9999999 999999999999999999997432     2234566788999999998874      3555566654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.5e-20  Score=161.01  Aligned_cols=152  Identities=18%  Similarity=0.212  Sum_probs=122.9

Q ss_pred             EEEECCCCCEEEEEeCCC-cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421          129 VSQFSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  207 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  207 (372)
                      ..+++++++.+++++.++ .+++|++........  ....+..++++++|+|++.+|++++.||.|++||+.++......
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  200 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR  200 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE--CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeee--eeeccCCceeEEEeccCccccccccccccccceeeccccccccc
Confidence            346777888888887765 799999876544332  23456678999999999999999999999999999887653221


Q ss_pred             ceeecccccceeccCCCCccccEEEEEEcCC----------CCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEE
Q 017421          208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----------GRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----------~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~  276 (372)
                      .               .+|...|.+++|+|+          +.+|++|+.|++|++||+++ .+.+..+.+|...|++++
T Consensus       201 ~---------------~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~  265 (287)
T d1pgua2         201 W---------------AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL  265 (287)
T ss_dssp             S---------------CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE
T ss_pred             c---------------cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE
Confidence            1               147779999999874          46899999999999999976 556677779999999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEec
Q 017421          277 FGDESGHLIYSGSDDNLCKVNSV  299 (372)
Q Consensus       277 ~sp~~~~~l~s~~~dg~i~vwd~  299 (372)
                      |+ +++ .|++++.|+.|++|++
T Consensus       266 ~~-~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         266 WE-TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EE-ETT-EEEEEETTSCEEEEEE
T ss_pred             EC-CCC-EEEEEECCCeEEEEEE
Confidence            99 665 5889999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=9.3e-19  Score=160.36  Aligned_cols=192  Identities=11%  Similarity=-0.013  Sum_probs=135.6

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEeeecccCCcceEEEEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~  177 (372)
                      .+.+..+.+|+....+....+..+ ..+..++|||||+++++++.|+.|.+||+.+++.  ........+|...+.+..|
T Consensus        38 ~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          38 LRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             EcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            344567788888777777777766 4699999999999999999999999999987642  2332333455556777788


Q ss_pred             CCCCCEE-EEEeCCCeEEEEECCCCceeeecceeec-ccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEE
Q 017421          178 SPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEI-HDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVY  254 (372)
Q Consensus       178 ~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iw  254 (372)
                      +|||++| +++..++.|++||..+++.......... .....+.      +......+.++|+|..+ ++...++.|.+|
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------PEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------SCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------CCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            9999986 6777899999999999987654432211 1111222      23467788999999876 456667999999


Q ss_pred             ECCCCeEEEEee-cCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEec
Q 017421          255 DLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSV  299 (372)
Q Consensus       255 d~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~  299 (372)
                      |..+.+...... .+...+..++|+ |+|+++++++. ++.+.++|.
T Consensus       191 d~~~~~~~~~~~i~~g~~~~~~~~s-pdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         191 DYTDLNNLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             ETTCSSEEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEET
T ss_pred             EccCCCcceEEEEcccCccccceEC-CCCCEEEEeccccceEEEeec
Confidence            998876443322 345567788888 88887766654 345666664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=7.1e-18  Score=145.78  Aligned_cols=238  Identities=13%  Similarity=0.078  Sum_probs=163.5

Q ss_pred             CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421          102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (372)
                      .+..+.+|+....+....+. ....+..++|+|||++| ++++.++.|.+||+.+++.+...   ..+. .+..+.|+++
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~---~~~~-~~~~~~~~~~   84 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PAGS-SPQGVAVSPD   84 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---ECSS-SEEEEEECTT
T ss_pred             CCCEEEEEECCCCeEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee---eccc-cccccccccc
Confidence            44556676655544333333 34567899999999987 46677899999999998776653   2333 4789999999


Q ss_pred             CCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCC-------------------------CCccccEEEEE
Q 017421          181 QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------------GGYSFGIFSLK  234 (372)
Q Consensus       181 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~h~~~i~~~~  234 (372)
                      +..++++ ..++.+.+|+..+++...............+.++..                         ..+...+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA  164 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred             cccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEE
Confidence            9876654 557789999998887654433222212222222211                         01233467788


Q ss_pred             EcCCCCEEEEEeCC-CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccccc-----CC
Q 017421          235 FSTDGRELVAGSSD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLLLT-----RS  305 (372)
Q Consensus       235 ~sp~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~~~-----~~  305 (372)
                      ++|+++.++++..+ +.+.+|+....+....+. ....+..++|+ +++..+++++   .++.|.+||+.+.+     ..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~  242 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVN-PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEEC-TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             eeccccceeeecccccccccccccceeeeeccc-ccCCcceeecc-ccccccccccccceeeeeeeeecCCCeEEEEEcC
Confidence            88888877766654 567777777776666655 34567789999 8888776654   34689999997543     34


Q ss_pred             CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          306 INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       306 ~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      ...+..++|+|||++|+++..     .|++|++||+.+++.+..+.
T Consensus       243 ~~~~~~va~spdg~~l~va~~-----~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         243 GPDPAGIAVTPDGKKVYVALS-----FCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEET-----TTTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEEC-----CCCeEEEEECCCCeEEEEEe
Confidence            457899999999998764421     47899999999999888764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.6e-19  Score=150.61  Aligned_cols=190  Identities=19%  Similarity=0.189  Sum_probs=129.2

Q ss_pred             ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----------------
Q 017421          100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----------------  162 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------  162 (372)
                      .+.|..+++|+....+....+.+|.+.|.+++|  ++++|++|+.|+.|++|++..+......                 
T Consensus        31 gs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (293)
T d1p22a2          31 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM  108 (293)
T ss_dssp             EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccce
Confidence            566778999999888878889999999999887  5789999999999999998765322211                 


Q ss_pred             -----------------------eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeec-------
Q 017421          163 -----------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-------  212 (372)
Q Consensus       163 -----------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------  212 (372)
                                             .....|...+..+.+.  ...+++++.|+.|++||+++++..........       
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  186 (293)
T d1p22a2         109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY  186 (293)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             eecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccC
Confidence                                   0111223334444333  34566666777777777766654433221100       


Q ss_pred             ccccceeccC-----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeEEEEee
Q 017421          213 HDGLDFSAAD-----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRIL  266 (372)
Q Consensus       213 ~~~~~~~~~~-----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~  266 (372)
                      ..........                 ..+|...+..  +++++.+|++|+.||.|++||+..         ..++..+.
T Consensus       187 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (293)
T d1p22a2         187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  264 (293)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec
Confidence            0000000000                 0235555654  456788999999999999999753         34678888


Q ss_pred             cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 017421          267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS  298 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd  298 (372)
                      +|.+.|++++|+   +.+|++++.||+|++||
T Consensus       265 ~H~~~V~~v~~d---~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         265 EHSGRVFRLQFD---EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCSSCCCCEEEC---SSCEEECCSSSEEEEEC
T ss_pred             CCCCCEEEEEEc---CCEEEEEecCCEEEEeC
Confidence            999999999985   46899999999999998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=5.6e-18  Score=148.68  Aligned_cols=223  Identities=11%  Similarity=-0.003  Sum_probs=159.5

Q ss_pred             CCceeEeeeeeCCCCCcccc--CCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecc--cCCcceEEEE
Q 017421          102 ADCCHMLSRYLPVNGPWPVD--QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAK--SLRWTVTDTS  176 (372)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~  176 (372)
                      .+..+.+|+.........+.  .+...+.+++|+|||+++ ++++.++.|.+||+.+++.+.......  .+...+..++
T Consensus         9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~   88 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence            34566777666554444443  345668899999999987 566788999999999987766543221  1123456899


Q ss_pred             ECCCCCEEEEEeC------------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421          177 LSPDQRHLVYASM------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       177 ~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      |+|++++++++..            +..+.+||..++........                 ...+..++|+|+|+++++
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------------PRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------------CSSCCCEEECTTSSCEEE
T ss_pred             EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-----------------cCCceEEEEcCCCCEEEE
Confidence            9999999987763            57788999998876444331                 125677899999998888


Q ss_pred             EeCCCeEEEEECCCCeEEEEee----------------------------------------------------------
Q 017421          245 GSSDDCIYVYDLEANKLSLRIL----------------------------------------------------------  266 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~~----------------------------------------------------------  266 (372)
                      ++.+  +.+||..+++....+.                                                          
T Consensus       152 ~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         152 LGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             ESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            7644  5678777665443321                                                          


Q ss_pred             --------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421          267 --------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYS  333 (372)
Q Consensus       267 --------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d  333 (372)
                              .+...+..+.++ +++.+++.+  ++.|++||+.+.+     .+...+.+++|+|||++|+++.      .|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~------~~  300 (337)
T d1pbyb_         230 EMAMREVRIMDVFYFSTAVN-PAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG------AL  300 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEEC-TTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES------BS
T ss_pred             cEEEEEecCCCcceEEEEec-ccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEe------CC
Confidence                    122334455666 677777655  5889999998543     4556789999999999999885      68


Q ss_pred             ceEEEeecccceEEEEEee
Q 017421          334 PNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       334 ~~i~lw~~~~~~~~~~~~~  352 (372)
                      ++|++||..+++.+..+..
T Consensus       301 ~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         301 GDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             SEEEEEETTTCCEEEEEEC
T ss_pred             CcEEEEECCCCcEEEEEEC
Confidence            9999999999999988754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=5.3e-18  Score=155.25  Aligned_cols=193  Identities=10%  Similarity=-0.108  Sum_probs=145.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL  216 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  216 (372)
                      -++++.+.+|+|.|||..+++.+..+.   .+. .+..++|+|||+++++++.|+.|.+||+.+++......+....   
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~---~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~---  105 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLD---TGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---  105 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEE---CSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEe---CCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC---
Confidence            345788999999999999998877643   232 5899999999999999999999999999987754333322111   


Q ss_pred             ceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecC-----------CCCeEEEEEeCCCCCE
Q 017421          217 DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAH-----------TSDVNTVCFGDESGHL  284 (372)
Q Consensus       217 ~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~~  284 (372)
                              +|...+.+..|+|||++| ++++.++.|++||..+++++..+..|           ......+.++ ++|..
T Consensus       106 --------~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~  176 (432)
T d1qksa2         106 --------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPE  176 (432)
T ss_dssp             --------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSE
T ss_pred             --------CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC-CCCCE
Confidence                    244566777889999976 67888999999999999988776543           3456678899 77766


Q ss_pred             E-EEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421          285 I-YSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF  350 (372)
Q Consensus       285 l-~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~  350 (372)
                      + ++...++.|.+||....+       .+...+..++|+|+|++++++..     .+..+.+++..+++.+..+
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~-----~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEE
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc-----ccceEEEeecccceEEEEe
Confidence            5 556678999999976432       34567789999999999888742     3456677777766665444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=4.3e-18  Score=149.95  Aligned_cols=210  Identities=13%  Similarity=0.078  Sum_probs=134.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCCceeeecc
Q 017421          130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLAN  208 (372)
Q Consensus       130 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~  208 (372)
                      ++|++++++|++++.+++|.|||+.+++.+.....  .+...+.+++|+|||+++++ +..++.|.+||+.+++......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            57899999999999999999999999977665332  33345789999999998754 5578999999999987654332


Q ss_pred             eee-------cccccceeccCC-----------------------------CCc----------cccEEEEEEcCCCCEE
Q 017421          209 VTE-------IHDGLDFSAADD-----------------------------GGY----------SFGIFSLKFSTDGREL  242 (372)
Q Consensus       209 ~~~-------~~~~~~~~~~~~-----------------------------~~h----------~~~i~~~~~sp~~~~l  242 (372)
                      ...       ...++.++++..                             .+.          ...+..+.+++++..+
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            211       112233333211                             000          0111223333333333


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEe---------------------------------------------------------
Q 017421          243 VAGSSDDCIYVYDLEANKLSLRI---------------------------------------------------------  265 (372)
Q Consensus       243 ~s~s~dg~i~iwd~~~~~~~~~~---------------------------------------------------------  265 (372)
                      +++   +.+.+|++.+++.+..+                                                         
T Consensus       160 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         160 VAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             EES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            221   22344444443332221                                                         


Q ss_pred             -----------ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421          266 -----------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVI  329 (372)
Q Consensus       266 -----------~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~  329 (372)
                                 ..|...+..+.++ +++.+++... ++.|.+||+.+.+     .+...+.+++|+|||++|+++.    
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~----  310 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRS-PKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG----  310 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEEC-SSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES----
T ss_pred             CCCCceEEEEeecccceeEEEEEe-CCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe----
Confidence                       1233445556666 4545555443 4679999987433     3446789999999999999886    


Q ss_pred             EEeeceEEEeecccceEEEEEee
Q 017421          330 SIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       330 ~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                        +|+.|++||..+++.+.....
T Consensus       311 --~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         311 --TFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             --BSSEEEEEETTTTEEEEEEEC
T ss_pred             --CCCcEEEEECccCCEEEEEEC
Confidence              789999999999999988763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.74  E-value=5.3e-17  Score=148.27  Aligned_cols=193  Identities=10%  Similarity=-0.057  Sum_probs=138.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccc
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD  217 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  217 (372)
                      ++++.+.||+|+|||+.+++.+..+.   .+. .+..++|+|||+++++++.|+.|++||+.+++......+....    
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~---~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~----  105 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVID---TGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI----  105 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEE---CCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS----
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe---CCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC----
Confidence            45778889999999999997776632   333 5899999999999999999999999999998764443322211    


Q ss_pred             eeccCCCCccccEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeEEEEeecCCCCe-----------EEEEEeCCCCCEE
Q 017421          218 FSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDV-----------NTVCFGDESGHLI  285 (372)
Q Consensus       218 ~~~~~~~~h~~~i~~~~~sp~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~sp~~~~~l  285 (372)
                             +|...+.+++|+|||+++++ +..++.+.+||..++.+...+..|...+           ..+.++ +++..+
T Consensus       106 -------~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~d~~~~  177 (426)
T d1hzua2         106 -------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS-HEHPEF  177 (426)
T ss_dssp             -------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC-SSSSEE
T ss_pred             -------CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEEC-CCCCEE
Confidence                   35556778889999998754 4578999999999998887776554333           445555 555554


Q ss_pred             EEEe-CCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421          286 YSGS-DDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM  351 (372)
Q Consensus       286 ~s~~-~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~  351 (372)
                      +... ..+.+.+++....       ..+...+..+.|+|++++++++..     .+..+.+++..+++.+....
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN-----NSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             EEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEET-----TCSEEEEEETTTTEEEEEEE
T ss_pred             EEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeee-----cccceeeeecccccEEEEec
Confidence            4433 3345555554321       246677889999999999988742     24667788888887766553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.5e-15  Score=132.78  Aligned_cols=148  Identities=15%  Similarity=0.133  Sum_probs=112.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeecceeecccc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDG  215 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  215 (372)
                      ++|++++.|++|.|||+.+++.+.... ...+...+.+++|+|||++++ +++.++.|.+||+.+++...........  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~-~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~--   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEE-CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc--
Confidence            579999999999999999987665532 333444578999999999875 5667999999999999875444322110  


Q ss_pred             cceeccCCCCccccEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                               .+...+..++|+|++++++++.            .+..+.+||..+++....+.. ...+..++|+ ++|+
T Consensus        79 ---------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~  147 (337)
T d1pbyb_          79 ---------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGS  147 (337)
T ss_dssp             ---------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSS
T ss_pred             ---------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEc-CCCC
Confidence                     1223456789999999988765            457899999999998888774 4568899999 9999


Q ss_pred             EEEEEeCCCeEEEEecc
Q 017421          284 LIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       284 ~l~s~~~dg~i~vwd~~  300 (372)
                      ++++++.+  +.+||..
T Consensus       148 ~l~~~~~~--~~~~d~~  162 (337)
T d1pbyb_         148 KLYGLGRD--LHVMDPE  162 (337)
T ss_dssp             CEEEESSS--EEEEETT
T ss_pred             EEEEEcCC--cceeeee
Confidence            99988654  6677764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=1.5e-14  Score=124.42  Aligned_cols=206  Identities=14%  Similarity=0.114  Sum_probs=146.5

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeecceeecccccc
Q 017421          139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLD  217 (372)
Q Consensus       139 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  217 (372)
                      +++++.|++|.|||+.+++.+.....    ...+..++|+|||++|+ ++..++.|.+||+.+++............++.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~----g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccc
Confidence            35677889999999999976654322    22478999999999875 56678999999999988755443322222233


Q ss_pred             eeccCC-------------------------CCccccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCC
Q 017421          218 FSAADD-------------------------GGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSD  271 (372)
Q Consensus       218 ~~~~~~-------------------------~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~  271 (372)
                      +.++..                         -.+...+.++.|+|+++.++ ++..++.+.+|+..+......+.. ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRS  159 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSS
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCC
Confidence            332211                         01344667899999998775 555678899999999988887764 456


Q ss_pred             eEEEEEeCCCCCEEEEEeCC-CeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          272 VNTVCFGDESGHLIYSGSDD-NLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~d-g~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                      +..+.++ +++..+++++.+ +.+.+|+.....     .....+..++|++++..++++..+   -.++.|++||..+++
T Consensus       160 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         160 PKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD---KYFNTVSMIDTGTNK  235 (301)
T ss_dssp             EEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEEC---SSCCEEEEEETTTTE
T ss_pred             ceEEEee-ccccceeeecccccccccccccceeeeecccccCCcceeecccccccccccccc---ceeeeeeeeecCCCe
Confidence            7899999 888877777655 667777765322     344567889999999988766311   135679999999998


Q ss_pred             EEEEEeee
Q 017421          346 TFYSFMVH  353 (372)
Q Consensus       346 ~~~~~~~h  353 (372)
                      .+..+..+
T Consensus       236 ~~~~~~~~  243 (301)
T d1l0qa2         236 ITARIPVG  243 (301)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEcCC
Confidence            88776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.4e-15  Score=128.42  Aligned_cols=232  Identities=11%  Similarity=0.004  Sum_probs=158.2

Q ss_pred             cCCceeEeeeeeCCCCCccc--cCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421          101 AADCCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL  177 (372)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  177 (372)
                      +.+..+.+|++........+  ..|.+.+..++|+|||++|++++ .|+.|.+|++..............+...+..++|
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~   90 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST   90 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence            45667888888765544433  37889999999999999986554 5899999999865433333223334445788999


Q ss_pred             CCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 017421          178 SPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYD  255 (372)
Q Consensus       178 ~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd  255 (372)
                      +|||++|++++. ++.|.+|+.............              .+...+.++.++|+++++++++. +..|.+|+
T Consensus        91 spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          91 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--------------EGLDGCHSANISPDNRTLWVPALKQDRICLFT  156 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             cCCCCEEeecccCCCceeeeccccccceeccccc--------------CCCccceEEEeeecceeeeccccccceeeEEE
Confidence            999999998875 678999998776543332221              13346778899999998887765 46799999


Q ss_pred             CCCCeEEEE------eecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc----------------CCCCCeeEE
Q 017421          256 LEANKLSLR------ILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT----------------RSINPCNKY  312 (372)
Q Consensus       256 ~~~~~~~~~------~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~----------------~~~~~v~~~  312 (372)
                      .........      .......+..++|+ +++..++... ..+...+|+.....                ........+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  235 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEe-ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence            876532221      12344567889999 7877776554 56678888764111                233456778


Q ss_pred             EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                      +++++++++++...     .++.+.+|++...........
T Consensus       236 ~~s~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  270 (333)
T d1ri6a_         236 HITPDGRHLYACDR-----TASLITVFSVSEDGSVLSKEG  270 (333)
T ss_dssp             EECTTSSEEEEEET-----TTTEEEEEEECTTSCCEEEEE
T ss_pred             EEecccCceeeecc-----cCCeEEEEEEcCCCCEEEEEE
Confidence            99999998876631     356777777766554444433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=1.4e-14  Score=129.12  Aligned_cols=223  Identities=8%  Similarity=-0.101  Sum_probs=144.9

Q ss_pred             cCCCCceEEEEECCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC------
Q 017421          121 DQTTSRAYVSQFSADGSLFVAG-----FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------  189 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------  189 (372)
                      ..+..++..++++|||+.+++.     +..+.|.+||..+++.+....   .+.  ...+.|+|||++|++++.      
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~---~~~--~~~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN---GGF--LPNPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe---CCC--CccEEEcCCCCEEEEEeecCCccc
Confidence            3567889999999999998764     234679999999997766522   222  337999999999998753      


Q ss_pred             ----CCeEEEEECCCCceeeecceeec--------ccccceeccCC-----------------------CCccccEEEEE
Q 017421          190 ----SPIVHIVDVGSGTMESLANVTEI--------HDGLDFSAADD-----------------------GGYSFGIFSLK  234 (372)
Q Consensus       190 ----dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----------------------~~h~~~i~~~~  234 (372)
                          ++.|.+||..+++..........        ..++.+.++..                       ..+.....++.
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYH  171 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEE
Confidence                57899999999886544322111        11223333221                       11234456788


Q ss_pred             EcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeecC--------------------------C------------------
Q 017421          235 FSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAH--------------------------T------------------  269 (372)
Q Consensus       235 ~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~--------------------------~------------------  269 (372)
                      ++|+++.+ ++.+.|+.+.+|+...+........+                          .                  
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEe
Confidence            99998655 67788999999998765443321100                          0                  


Q ss_pred             ---------------CCeEEEEEeCCCCCEE----------EEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCC
Q 017421          270 ---------------SDVNTVCFGDESGHLI----------YSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNK  319 (372)
Q Consensus       270 ---------------~~v~~~~~sp~~~~~l----------~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~  319 (372)
                                     .....++++ +++..+          ++...++.+.+||+.+.+     .+...+..++|+|||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~  330 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYL-KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG  330 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEe-cCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCC
Confidence                           011123344 333333          334455677888876443     4556789999999998


Q ss_pred             eEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          320 YLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       320 ~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      .++..+    .--|+.|++||+.+++.+.++..|
T Consensus       331 ~~l~vt----~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         331 PDLYAL----SAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             EEEEEE----eCCCCeEEEEECCCCCEEEEECCC
Confidence            643221    114889999999999999988765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=4.1e-15  Score=131.45  Aligned_cols=221  Identities=15%  Similarity=0.096  Sum_probs=147.6

Q ss_pred             eEEEEECCCCCEEEEE----------eCCCcEEEEeCCCCeEEEEeeecccCC----cceEEEEECCCCCEEEEEeC--C
Q 017421          127 AYVSQFSADGSLFVAG----------FQASQIRIYDVERGWKIQKDILAKSLR----WTVTDTSLSPDQRHLVYASM--S  190 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~----------~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~--d  190 (372)
                      +..++|||||++|++.          ..++.|.+||+.+++.+........+.    .....+.|+|++++++.+..  +
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            3478999999988764          347899999999987766543322221    23456899999999887754  5


Q ss_pred             CeEEEEECCCCceeeecceeec--------ccccceeccC---------------------CCCccccEEEEEEcCCCCE
Q 017421          191 PIVHIVDVGSGTMESLANVTEI--------HDGLDFSAAD---------------------DGGYSFGIFSLKFSTDGRE  241 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~---------------------~~~h~~~i~~~~~sp~~~~  241 (372)
                      ..+.+|+..+++..........        ...+.+.++.                     ...+...+....+.+++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCe
Confidence            6899999998876543322110        0001111111                     0123334555677888888


Q ss_pred             EEEEeCCCeEEEEECCCCeEEE--EeecC----------CCCeEEEEEeCCCCCEEEEEeCC----------CeEEEEec
Q 017421          242 LVAGSSDDCIYVYDLEANKLSL--RILAH----------TSDVNTVCFGDESGHLIYSGSDD----------NLCKVNSV  299 (372)
Q Consensus       242 l~s~s~dg~i~iwd~~~~~~~~--~~~~~----------~~~v~~~~~sp~~~~~l~s~~~d----------g~i~vwd~  299 (372)
                      ++.++.++.+++|++..+....  ....+          ......++++ +++..++....+          ..|.+||+
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH-RALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE-TTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe-CCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            9999999999999998775321  11111          1233458888 888887766543          36999998


Q ss_pred             cccc-----CCCCCeeEEEeccCCCe-EEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421          300 LLLT-----RSINPCNKYLFNPCNKY-LIIYLILVISIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       300 ~~~~-----~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                      .+.+     .....+.+++|+|||+. ++++.     -.|++|.+||..+++.++++.++
T Consensus       288 ~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~-----~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         288 KTGERLAKFEMGHEIDSINVSQDEKPLLYALS-----TGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             TTCCEEEEEEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEECCC
T ss_pred             CCCcEEEEecCCCCEEEEEEcCCCCeEEEEEE-----CCCCEEEEEECCCCCEEEEEeCc
Confidence            7543     23456789999999984 33331     15899999999999999888654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=1.1e-14  Score=127.66  Aligned_cols=201  Identities=13%  Similarity=0.021  Sum_probs=135.9

Q ss_pred             ccCCceeEeeeeeCCCCCcccc-CCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeeccc---CCcceEE
Q 017421          100 SAADCCHMLSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVTD  174 (372)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~v~~  174 (372)
                      .+.+..+.+|+....+....+. .+...+.+++|+|||+++ +++..++.|.+||+.+++.+........   +...+..
T Consensus        14 ~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~   93 (346)
T d1jmxb_          14 TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS   93 (346)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred             EcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEE
Confidence            4455677788776655444444 456678899999999987 5556789999999999977655432221   1224668


Q ss_pred             EEECCCCCEEEEEe------------CCCeEEEEECCCCceeeecceee-------------------------------
Q 017421          175 TSLSPDQRHLVYAS------------MSPIVHIVDVGSGTMESLANVTE-------------------------------  211 (372)
Q Consensus       175 ~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~-------------------------------  211 (372)
                      ++|+|||+++++++            .++.+.+|+..+++.........                               
T Consensus        94 v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (346)
T d1jmxb_          94 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG  173 (346)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTC
T ss_pred             EEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCC
Confidence            99999999987764            35667778766544321110000                               


Q ss_pred             ----------cccccceeccCC----------------------------------------------------CCcccc
Q 017421          212 ----------IHDGLDFSAADD----------------------------------------------------GGYSFG  229 (372)
Q Consensus       212 ----------~~~~~~~~~~~~----------------------------------------------------~~h~~~  229 (372)
                                ......+.+...                                                    ..|...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (346)
T d1jmxb_         174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL  253 (346)
T ss_dssp             CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccce
Confidence                      000011111100                                                    023445


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421          230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT  303 (372)
Q Consensus       230 i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~  303 (372)
                      +..+.+++++.+++... ++.|.+||..+++.+..+. +...+.+++|+ |||++|++++.|+.|++||+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s-~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         254 YFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFD-KKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             EEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC-SSSSCEEEESBSSEEEEEETTTTE
T ss_pred             eEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECccCC
Confidence            56677788777776665 4679999999999888776 45679999999 999999999999999999998653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3.4e-13  Score=117.59  Aligned_cols=172  Identities=12%  Similarity=0.095  Sum_probs=122.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeeccccc
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGL  216 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~  216 (372)
                      .+++++.|++|+||++.....+.. .....+...+..++|+|||++|++++. |+.|.+|++..............    
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~-~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~----   80 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTL-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA----   80 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEE-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE----
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEE-EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc----
Confidence            356778999999999976533322 122345567999999999999966554 89999999986653222211111    


Q ss_pred             ceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEE--eecCCCCeEEEEEeCCCCCEEEEEe-CCC
Q 017421          217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGS-DDN  292 (372)
Q Consensus       217 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~~l~s~~-~dg  292 (372)
                               +...+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++ ++++++++++ .+.
T Consensus        81 ---------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          81 ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS-PDNRTLWVPALKQD  150 (333)
T ss_dssp             ---------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC-TTSSEEEEEEGGGT
T ss_pred             ---------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee-ecceeeeccccccc
Confidence                     1235678999999999988875 67899999877654333  33566788899999 9999888776 456


Q ss_pred             eEEEEeccccc------------CCCCCeeEEEeccCCCeEEEE
Q 017421          293 LCKVNSVLLLT------------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       293 ~i~vwd~~~~~------------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .|.+|+.....            ........++|++++.+++..
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            79999875211            234456889999999988766

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=1.3e-11  Score=108.51  Aligned_cols=209  Identities=10%  Similarity=-0.019  Sum_probs=136.5

Q ss_pred             EEECCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe----------CCCeEE
Q 017421          130 SQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVH  194 (372)
Q Consensus       130 ~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  194 (372)
                      .+.+||++.+++..     .+..|.+||..+++.+....   .+  ....++|+|||++|++++          .++.|.
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~---~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID---GG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE---EC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE---CC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            35689999987653     35579999999997766532   22  234799999999888653          478999


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCC---
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHT---  269 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~---  269 (372)
                      +||+.+++.............         ........++|+|++++++.++  .+..+.+|+..+++.+..+..+.   
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH  152 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             EEECCCCCEEEEEecCCccee---------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce
Confidence            999999887554432211110         0112334578999999887764  45679999999887655433211   


Q ss_pred             ------------------------------------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----
Q 017421          270 ------------------------------------------SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----  303 (372)
Q Consensus       270 ------------------------------------------~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----  303 (372)
                                                                ..+....+. +++..++.++.++.+.+|++....    
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~  231 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDAKFL  231 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSSCEEC
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeecccc-CCCCeEEEecCCCeEEEEecCCCcEEEE
Confidence                                                      112233455 556677777889999999876321    


Q ss_pred             ----C----------CCCCeeEEEeccCCCeEEEEeeee-E---EEeeceEEEeecccceEEEEEeee
Q 017421          304 ----R----------SINPCNKYLFNPCNKYLIIYLILV-I---SIYSPNILLDNYFLLRTFYSFMVH  353 (372)
Q Consensus       304 ----~----------~~~~v~~~~~s~~g~~l~~~~~~~-~---~~~d~~i~lw~~~~~~~~~~~~~h  353 (372)
                          .          .......+++++++..++...... .   ......+.+||..+++.+..+..+
T Consensus       232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~  299 (355)
T d2bbkh_         232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG  299 (355)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC
Confidence                0          112335688999998887653211 0   011357899999999988776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=4.3e-12  Score=112.78  Aligned_cols=216  Identities=10%  Similarity=-0.029  Sum_probs=133.8

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeeccc----CCcceEEEEECCCCCEEEEEe-CCCeE
Q 017421          129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKS----LRWTVTDTSLSPDQRHLVYAS-MSPIV  193 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~dg~i  193 (372)
                      .++|+|||+.|++.+          .|+.|.+||..+++.+........    .......++|+|||++++++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            589999999888754          367899999999877665432211    111244689999999998876 47899


Q ss_pred             EEEECCCCceeeecceeecc--------cccceeccC---------------------CCCccccEEEEEEcCCCCEEEE
Q 017421          194 HIVDVGSGTMESLANVTEIH--------DGLDFSAAD---------------------DGGYSFGIFSLKFSTDGRELVA  244 (372)
Q Consensus       194 ~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~---------------------~~~h~~~i~~~~~sp~~~~l~s  244 (372)
                      .+||+.+++...........        ..+.++++.                     ...+...+..+.+.+++..+.+
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence            99999998765443221110        000111100                     0112233345566666654443


Q ss_pred             EeCCCeEEEEECCCCeEEEEee--cC----------CCCeEEEEEeCCCCCEEEEEeCC---------CeEEEEeccccc
Q 017421          245 GSSDDCIYVYDLEANKLSLRIL--AH----------TSDVNTVCFGDESGHLIYSGSDD---------NLCKVNSVLLLT  303 (372)
Q Consensus       245 ~s~dg~i~iwd~~~~~~~~~~~--~~----------~~~v~~~~~sp~~~~~l~s~~~d---------g~i~vwd~~~~~  303 (372)
                        ..+.+.++++..+.......  .+          ......++++ +++..++....+         ..|.+||..+.+
T Consensus       229 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~-~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~  305 (368)
T d1mdah_         229 --VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL-KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             --BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE-TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred             --cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc-CCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence              34556677766554332211  11          1123457888 777766554322         358899987554


Q ss_pred             -----CCCCCeeEEEeccCCCe-EEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421          304 -----RSINPCNKYLFNPCNKY-LIIYLILVISIYSPNILLDNYFLLRTFYSFMV  352 (372)
Q Consensus       304 -----~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~  352 (372)
                           .....+.+++|+|||+. ++++.     ..|+.|.+||..+++.+.++..
T Consensus       306 ~~~~~~~~~~~~~~a~spDG~~~ly~s~-----~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         306 TSGPISNGHDSDAIIAAQDGASDNYANS-----AGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEECCEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEESSSCEEEEECCC
T ss_pred             EeEEecCCCceeEEEECCCCCEEEEEEe-----CCCCeEEEEECCCCCEEEEEEC
Confidence                 23356788999999974 44332     1478999999999999988754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.36  E-value=1.1e-10  Score=103.26  Aligned_cols=186  Identities=10%  Similarity=0.013  Sum_probs=114.5

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeecc--------------------------------
Q 017421          129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAK--------------------------------  166 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~--------------------------------  166 (372)
                      .++|+|||++|+++.          .++.|.|||+.+++.+.......                                
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            689999999998864          35789999999875443211000                                


Q ss_pred             ------------cCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCceeeecceeecc--------------cc-cce
Q 017421          167 ------------SLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIH--------------DG-LDF  218 (372)
Q Consensus       167 ------------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~~-~~~  218 (372)
                                  .+...+.++.++|+++.+ ++.+.|+.+.+|+...+............              .+ ..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (373)
T d2madh_         150 VGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW  229 (373)
T ss_pred             eEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence                        001123456677877654 56777899999998776654322110000              00 000


Q ss_pred             eccCC------------------CCc----------cccEEEEEEcCCCCEEE----------EEeCCCeEEEEECCCCe
Q 017421          219 SAADD------------------GGY----------SFGIFSLKFSTDGRELV----------AGSSDDCIYVYDLEANK  260 (372)
Q Consensus       219 ~~~~~------------------~~h----------~~~i~~~~~sp~~~~l~----------s~s~dg~i~iwd~~~~~  260 (372)
                      .....                  ..+          ......++++|++..++          +...++.+.+||..+++
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~  309 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ  309 (373)
T ss_pred             ecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc
Confidence            00000                  000          11223456666665443          44556789999999999


Q ss_pred             EEEEeecCCCCeEEEEEeCCCCCE--EEEEeCCCeEEEEeccccc------CCCCCeeEEEecc
Q 017421          261 LSLRILAHTSDVNTVCFGDESGHL--IYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNP  316 (372)
Q Consensus       261 ~~~~~~~~~~~v~~~~~sp~~~~~--l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~  316 (372)
                      .+..+. +...+.+++|+ |||+.  +++++.|+.|++||+.+.+      .+....+.+++.+
T Consensus       310 ~~~~~~-~~~~~~~~a~s-pDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         310 TSSQIS-LGHDVDAISVA-QDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             EEEEec-CCCCeeEEEEC-CCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            888775 66788999999 89884  4678899999999998543      3444455555433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=7.3e-11  Score=108.21  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=73.5

Q ss_pred             CceeEeeeeeCCCCC-----ccccCCCCceEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEeeecccC
Q 017421          103 DCCHMLSRYLPVNGP-----WPVDQTTSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSL  168 (372)
Q Consensus       103 ~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~  168 (372)
                      +..+.+++.......     ..+..|...|.++.|||||++|+.++.         ++.+.|||+.++...    ....+
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~----~l~~~  110 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERI  110 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCC
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc----ccccC
Confidence            344556665555432     345566788999999999999998743         567899999988432    25566


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      ...+..+.|+|||+.||... ++.+++|+..++....
T Consensus       111 ~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1         111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             CccccccccccCcceeeEee-cccceEEECCCCceee
Confidence            77899999999999999864 6789999988776543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=4.6e-11  Score=109.56  Aligned_cols=142  Identities=14%  Similarity=0.116  Sum_probs=106.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--eecccCCcceEEEEECCCCCEEEEEeC---------CCeEEEEE
Q 017421          129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIVD  197 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd  197 (372)
                      .+.|.+++.++..  .++.+.+||+.+++.....  ..+..+...|.++.|+||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4679999987653  5788999999998654321  123445567999999999999998753         46789999


Q ss_pred             CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC---------
Q 017421          198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH---------  268 (372)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------  268 (372)
                      +.+++...+.                 .+...+..+.|||||+.||... ++.+.+|+..+++..+....+         
T Consensus        99 ~~~~~~~~l~-----------------~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~  160 (470)
T d2bgra1          99 LNKRQLITEE-----------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGI  160 (470)
T ss_dssp             TTTTEECCSS-----------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred             CCCCcccccc-----------------cCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccc
Confidence            9998754333                 2445789999999999999865 678999999988765443211         


Q ss_pred             ---------CCCeEEEEEeCCCCCEEEEEeCC
Q 017421          269 ---------TSDVNTVCFGDESGHLIYSGSDD  291 (372)
Q Consensus       269 ---------~~~v~~~~~sp~~~~~l~s~~~d  291 (372)
                               .+....+.|| |||+.|+....|
T Consensus       161 ~d~~~~~~~~~~~~~~~wS-PDGk~ia~~~~d  191 (470)
T d2bgra1         161 TDWVYEEEVFSAYSALWWS-PNGTFLAYAQFN  191 (470)
T ss_dssp             CCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEE
T ss_pred             cceeeeeeecCCccccEEC-CCCCccceeEec
Confidence                     2234568899 999999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.13  E-value=3e-09  Score=94.89  Aligned_cols=195  Identities=8%  Similarity=-0.026  Sum_probs=125.3

Q ss_pred             cCCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE--EEEEeCCC------
Q 017421          121 DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYASMSP------  191 (372)
Q Consensus       121 ~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg------  191 (372)
                      ..|.........+|||++|++. ..+..|.++|+.+.+.......  .+...+..+.|+|+++.  ++..+.+.      
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i--P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI--PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--TTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec--CCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            3455566667778999998655 5678999999999866554322  23346899999999985  44444332      


Q ss_pred             -----------eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------------
Q 017421          192 -----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------  248 (372)
Q Consensus       192 -----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------------  248 (372)
                                 .+..+|..+.+........                 .....+.|+|+|+++++++.+            
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-----------------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~  208 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVD-----------------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMR  208 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEES-----------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred             ccccccccccceEEeecCccceeeEEEecC-----------------CCccceEECCCCCEEEEEecCCCceEEEeccCc
Confidence                       2344666665543322211                 135567788888877766533            


Q ss_pred             -----------------------------CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEE-EEeCCCeEEEEe
Q 017421          249 -----------------------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVNS  298 (372)
Q Consensus       249 -----------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~-s~~~dg~i~vwd  298 (372)
                                                   +.+.+++......+..+.... ....+.++ |||++++ ++..+++|.|||
T Consensus       209 ~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vS-PDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         209 NDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTS-PDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             SSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEEC-TTSCEEEEECTTSSBEEEEE
T ss_pred             ceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceEC-CCCCEEEEeCCcCCcEEEEE
Confidence                                         344455555555566666544 35789999 9999775 456899999999


Q ss_pred             ccccc----CC-------------CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          299 VLLLT----RS-------------INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       299 ~~~~~----~~-------------~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                      +.++.    ..             .-.....+|+++|..+.+..      .|.+|..|++.
T Consensus       287 ~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~------~ds~v~kw~~~  341 (441)
T d1qnia2         287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF------IDSQVCKWNIA  341 (441)
T ss_dssp             GGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET------TTTEEEEEEHH
T ss_pred             eehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc------ccceEEEeccc
Confidence            97533    11             11223457888886655543      57888999874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.08  E-value=4.1e-09  Score=94.03  Aligned_cols=184  Identities=12%  Similarity=0.072  Sum_probs=123.1

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeeeccc---------------------------CCcceEEEEECCCCCEEEEEe-CC
Q 017421          139 FVAGFQASQIRIYDVERGWKIQKDILAKS---------------------------LRWTVTDTSLSPDQRHLVYAS-MS  190 (372)
Q Consensus       139 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~-~d  190 (372)
                      +++++.+|+|.||++.+++.+...-.+..                           |.-........|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788999999999999877665422210                           111233444578999987665 57


Q ss_pred             CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC--EEEEEeCCC-----------------eE
Q 017421          191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDD-----------------CI  251 (372)
Q Consensus       191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~s~dg-----------------~i  251 (372)
                      ++|.++|+.+++........               +...+..++|+|+|+  +++..+.+.                 .+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP---------------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIP---------------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECT---------------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecC---------------CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            89999999999876554432               223788999999998  444444332                 24


Q ss_pred             EEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC---------------eEEEEe------------------
Q 017421          252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---------------LCKVNS------------------  298 (372)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg---------------~i~vwd------------------  298 (372)
                      ..+|..+.+...++... ..+..+.++ |+|+++++.+.+.               .|.+.+                  
T Consensus       159 ~~iD~~t~~v~~qI~v~-~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVD-GNLDNTDAD-YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EEEETTTCSEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EeecCccceeeEEEecC-CCccceEEC-CCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            56888888777776643 457889999 9999998887542               122222                  


Q ss_pred             --------ccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          299 --------VLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       299 --------~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                              .....     ........+.++|||++++++.     -.++++.+||+...
T Consensus       237 ~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~-----~~~~tvsv~d~~k~  290 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANG-----KLSPTVSVIAIDKL  290 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEEC-----TTSSBEEEEEGGGH
T ss_pred             CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeC-----CcCCcEEEEEeehh
Confidence                    11100     1223457899999999998773     15788888887653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=4e-07  Score=75.92  Aligned_cols=210  Identities=15%  Similarity=0.085  Sum_probs=129.5

Q ss_pred             CCCCCccccCCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421          113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      ....+..+..+...+...+|||||+.||......   .+.+.+...+....    ...+........|+|+++.++....
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE----EeeeecccccceecCCCCeeeEeee
Confidence            4555666666778889999999999998765433   47777777664332    2234446788999999999887654


Q ss_pred             -CCe--EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCC--eEEEEECCCCeEEE
Q 017421          190 -SPI--VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDD--CIYVYDLEANKLSL  263 (372)
Q Consensus       190 -dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg--~i~iwd~~~~~~~~  263 (372)
                       ++.  +..+............                 .........+++++..++..+ .++  .|.+.++..+.. .
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~  164 (269)
T d2hqsa1         103 KTGSLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-Q  164 (269)
T ss_dssp             TTSSCEEEEEETTTCCEEECCC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-E
T ss_pred             cCCccceeecccccccceeeee-----------------ccccccccccccccccceecccccCCceEeeeecccccc-e
Confidence             333  2233322222111111                 112344566777777665443 344  467777776644 3


Q ss_pred             EeecCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEec--cc----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421          264 RILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSV--LL----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI  336 (372)
Q Consensus       264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~--~~----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i  336 (372)
                      .+..+........|+ |+++.++..+. .+...+|..  ..    ............|+|||+.|+..+...   -...|
T Consensus       165 ~~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~---~~~~l  240 (269)
T d2hqsa1         165 RITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG---MGSVL  240 (269)
T ss_dssp             ECCCSSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEET---TEEEE
T ss_pred             eeecccccccccccc-cccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCC---CCcEE
Confidence            344456677788999 88888877654 444444443  31    223445667889999999988653211   13467


Q ss_pred             EEeecccceEEE
Q 017421          337 LLDNYFLLRTFY  348 (372)
Q Consensus       337 ~lw~~~~~~~~~  348 (372)
                      .++++..+...+
T Consensus       241 ~~~~~dg~~~~~  252 (269)
T d2hqsa1         241 NLVSTDGRFKAR  252 (269)
T ss_dssp             EEEETTSCCEEE
T ss_pred             EEEECCCCCEEE
Confidence            888887765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.05  E-value=1.6e-08  Score=86.72  Aligned_cols=225  Identities=10%  Similarity=0.055  Sum_probs=145.1

Q ss_pred             cCCCCccccCC-ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcc
Q 017421           93 YSGRGRFSAAD-CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT  171 (372)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  171 (372)
                      +.+++.+...+ ....++++.+......+......+.+++|++||+++++...++.+.+++...................
T Consensus        35 v~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (302)
T d2p4oa1          35 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF  114 (302)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             ECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccc
Confidence            34555553222 24456677776666666777889999999999999999888888888876543222222222223345


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeE
Q 017421          172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI  251 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i  251 (372)
                      +..+.+.++++++++.+.++.+..++...+..............      ...........+.++. +.++++.+..+.|
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i  187 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS------NSESVFPAANGLKRFG-NFLYVSNTEKMLL  187 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS------STTCCSCSEEEEEEET-TEEEEEETTTTEE
T ss_pred             cceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee------eccCcccccccccccC-CceeeecCCCCeE
Confidence            78999999999988888899999999887653221111000000      0001223456677654 3455666778889


Q ss_pred             EEEECCCCeEEE--EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEe---ccCCC
Q 017421          252 YVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLF---NPCNK  319 (372)
Q Consensus       252 ~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~---s~~g~  319 (372)
                      ..+++.......  ...........+++. ++|+++++...++.|..++..-       .......+++++|   ++|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~pdgia~d-~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~  266 (302)
T d2p4oa1         188 LRIPVDSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCT  266 (302)
T ss_dssp             EEEEBCTTSCBCCCEEEEESCCCSSEEEB-TTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             EeccccccccccccccccCCCCCcceEEC-CCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCC
Confidence            999886543211  111233456789999 9999888888899999998651       1223356789999   77888


Q ss_pred             eEEEEe
Q 017421          320 YLIIYL  325 (372)
Q Consensus       320 ~l~~~~  325 (372)
                      .|++++
T Consensus       267 ~Lyvtt  272 (302)
T d2p4oa1         267 AIYVVT  272 (302)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            887664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=8.9e-08  Score=81.90  Aligned_cols=188  Identities=11%  Similarity=0.036  Sum_probs=126.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  205 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  205 (372)
                      .+..++++|||+++++...+++|..|+.......     .......+.+++|+++|+++++...++.+..|+........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~-----~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-----HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-----EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE-----EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            4778999999999999998999988886654222     12333468999999999999998888888888865433211


Q ss_pred             ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec----------CCCCeEEE
Q 017421          206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----------HTSDVNTV  275 (372)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~  275 (372)
                      .. ....            ......+.+++.++++++++.+.++.+..+|...+........          .......+
T Consensus       104 ~~-~~~~------------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi  170 (302)
T d2p4oa1         104 ET-LLTL------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  170 (302)
T ss_dssp             EE-EEEC------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             ee-cccc------------CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence            11 1110            1123678899999999999888899999999887764332221          11234566


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEe-eeeEEEee
Q 017421          276 CFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYL-ILVISIYS  333 (372)
Q Consensus       276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~d  333 (372)
                      .+.  .+.++++.+..+.|..++.....        ........++|+++|++.++.. ++.+..++
T Consensus       171 ~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         171 KRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             ccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            665  34556666778888888875221        1234457899999998666542 33344443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.01  E-value=2.8e-09  Score=94.08  Aligned_cols=183  Identities=8%  Similarity=-0.085  Sum_probs=115.8

Q ss_pred             CCceEEEEECCCCCEEEE---EeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe----------
Q 017421          124 TSRAYVSQFSADGSLFVA---GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------  188 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~---~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------  188 (372)
                      .+....++..++++....   ...++  .|.+||..+++.+....   .+.  ...++|+|||+.|++++          
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~---~~~--~~~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL---GAF--LSLAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE---ECT--TCEEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe---CCC--CCcceECCCCCEEEEEcccCccccccc
Confidence            444555567788875422   23344  47777998887666432   222  23589999999998765          


Q ss_pred             CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEeec
Q 017421          189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILA  267 (372)
Q Consensus       189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~  267 (372)
                      .++.|.+||..+++............   +.      .......++|+|||++|+++. .++.+.+||+.+++....+..
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~---~~------~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPR---FS------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCS---CC------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             cCCeEEEEECCCCcEeeeecCCccce---ec------ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence            36779999999988654433221100   00      011233589999999988775 578999999999998888876


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +....    +.|.....++..+.||.+.+|++..            ...+...+..+.+.+++..+...
T Consensus       165 ~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         165 ASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             SSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             cCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            54432    1113344566666777777776541            12344455677788887766544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=2.8e-07  Score=81.01  Aligned_cols=158  Identities=10%  Similarity=-0.010  Sum_probs=101.8

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CC
Q 017421          171 TVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD  248 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~d  248 (372)
                      -+.++.|+|||++++++.. ...|.+|+................           ........++|+|+++++.+.. .+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-----------~~g~gPr~i~f~pdg~~~yv~~e~~  214 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-----------DPGDHPRWVAMHPTGNYLYALMEAG  214 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-----------STTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-----------CCCCceEEEEECCCCceEEEeccCC
Confidence            3789999999998888765 457888876544322111111100           1224688999999999886554 57


Q ss_pred             CeEEEEECCCCeE--EEE---ee--------------cCCCCeEEEEEeCCCCCEEEEEeC------CCeEEEEeccccc
Q 017421          249 DCIYVYDLEANKL--SLR---IL--------------AHTSDVNTVCFGDESGHLIYSGSD------DNLCKVNSVLLLT  303 (372)
Q Consensus       249 g~i~iwd~~~~~~--~~~---~~--------------~~~~~v~~~~~sp~~~~~l~s~~~------dg~i~vwd~~~~~  303 (372)
                      ++|.+|++..+..  ...   ..              .+......+.++ |+|++|+++..      .+.|..|++....
T Consensus       215 ~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g  293 (365)
T d1jofa_         215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-FSGKYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-TTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEEC-CCCCEEEEEcccCCCccceEEEEEEecCCC
Confidence            8999999876532  111   11              011234578999 99999887742      2237677654211


Q ss_pred             ------------CCCCCeeEEEecc-CCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          304 ------------RSINPCNKYLFNP-CNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       304 ------------~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                                  ........++++| +|++|+++..     .++.|.+|++....
T Consensus       294 ~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~-----~s~~v~v~~~~~~~  343 (365)
T d1jofa_         294 SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-----QEGWLEIYRWKDEF  343 (365)
T ss_dssp             CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS-----SSCEEEEEEEETTE
T ss_pred             ceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC-----CCCeEEEEEEeCCc
Confidence                        2234567899998 8999988842     36888888775543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=1.9e-07  Score=82.08  Aligned_cols=177  Identities=9%  Similarity=-0.010  Sum_probs=109.3

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEE--EeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG  199 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~  199 (372)
                      ...+.++.|+|||+++++++. ...|.+|+......+.  ..............+.|+|+++++.+.. .++.|.+|++.
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            345789999999998887754 3478888765432221  1112222334688999999999886665 48899999998


Q ss_pred             CCceeeecceeecc---cccceeccCCCCccccEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEE------
Q 017421          200 SGTMESLANVTEIH---DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLR------  264 (372)
Q Consensus       200 ~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~------  264 (372)
                      .+............   .+..-.......+......+.++|||++|+++..      .+.|..|++.....+..      
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            76543222211110   0000000111123445678999999999877642      23477788764322111      


Q ss_pred             eecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecc
Q 017421          265 ILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVL  300 (372)
Q Consensus       265 ~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~  300 (372)
                      .........+++++|.+|++|+++. .++.|.+|+++
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            1123445678999954899887775 67899999875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=4.8e-07  Score=76.28  Aligned_cols=111  Identities=10%  Similarity=0.076  Sum_probs=81.6

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEecc--
Q 017421          226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSVL--  300 (372)
Q Consensus       226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~--  300 (372)
                      +......+++.++++.+++....+.|++||.. ++.+.++.  +.......|++. ++|+++++-.. ++.|.+|+..  
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD-~~G~i~Vad~~~~~~v~~f~~~G~  232 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQDGQ  232 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECTTSC
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccc-cCCeEEEEECCCCcEEEEECCCCC
Confidence            34567889999999988888888999999975 55666663  344567899999 89997776543 4579998864  


Q ss_pred             ---ccc--CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421          301 ---LLT--RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR  345 (372)
Q Consensus       301 ---~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~  345 (372)
                         ++.  ........+++.|+|+++++.       ++..|++|.+....
T Consensus       233 ~~~~~~~~~~~~~p~~vav~~dG~l~V~~-------~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         233 LISALESKVKHAQCFDVALMDDGSVVLAS-------KDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEEEE-------TTTEEEEEECSCCC
T ss_pred             EEEEEeCCCCCCCEeEEEEeCCCcEEEEe-------CCCeEEEEEeeeec
Confidence               111  223357899999999866554       67889999887654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=2.5e-07  Score=77.17  Aligned_cols=179  Identities=10%  Similarity=0.020  Sum_probs=121.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      ....+++++++++++++....+.+++++..+...+..   . .....+.++++.++++++++-.....+..++.......
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~---~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP---F-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC---C-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee---e-eeeeecccccccccceeEeeccccccccccccccceee
Confidence            3467889999999888777766777666554433221   1 22235789999999998877666677777776554321


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCE
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL  284 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~  284 (372)
                      .... .               .......++++|+++++++...++.|..+|...................+++. ++|++
T Consensus       133 ~~~~-~---------------~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d-~~g~l  195 (260)
T d1rwia_         133 VLPF-T---------------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTV  195 (260)
T ss_dssp             ECCC-C---------------SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEEC-TTCCE
T ss_pred             eeee-c---------------ccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceee-eeeee
Confidence            1110 0               11245678999999988888888999999987654433323455677899998 88998


Q ss_pred             EEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEE
Q 017421          285 IYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       285 l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +++....+.|..++....      ...-.....++++++|.++++-
T Consensus       196 ~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad  241 (260)
T d1rwia_         196 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD  241 (260)
T ss_dssp             EEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEE
T ss_pred             eeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEE
Confidence            888878888888876521      1222456899999998765543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=5.3e-07  Score=75.15  Aligned_cols=180  Identities=9%  Similarity=-0.005  Sum_probs=116.6

Q ss_pred             CCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          124 TSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      .....+++++++|+.+++. +..+.+..++.........  ...+ ......++++++++.+++....+.+++++-.+..
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~--~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC--CCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe--ccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence            3456899999999977665 4456777776654422221  1122 2246789999999877776666666665544433


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  282 (372)
                      ..  ...               ........+++.++++++++-..+..+..++...................++++ +++
T Consensus        90 ~~--~~~---------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g  151 (260)
T d1rwia_          90 TV--LPF---------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSG  151 (260)
T ss_dssp             EE--CCC---------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC-TTC
T ss_pred             ee--eee---------------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec-CCC
Confidence            21  110               011357889999999988877777778888776544322222223456789998 889


Q ss_pred             CEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEE
Q 017421          283 HLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       283 ~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      +++++...++.|..+|....      .........+++.++|+++++.
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd  199 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE  199 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred             CEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeee
Confidence            98888888889999997621      1334556889999999876665

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.76  E-value=5.3e-06  Score=71.10  Aligned_cols=199  Identities=10%  Similarity=0.033  Sum_probs=123.0

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC----CCeEEEEECCC
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SPIVHIVDVGS  200 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~  200 (372)
                      ..+.+++|.++|+++++-...+.|..|+...+......   .........+++++||+++++...    .+.+...+..+
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~---~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE---eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            34568999999998888778899999998776443332   223335789999999998877543    23455555555


Q ss_pred             CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCeEE
Q 017421          201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVNT  274 (372)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~v~~  274 (372)
                      ..........              .-....+.+++.|+|++.++...      .+.+..++..... +..+...-...+.
T Consensus       117 ~~~~~~~~~~--------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnG  181 (319)
T d2dg1a1         117 DNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANG  181 (319)
T ss_dssp             CSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEE
T ss_pred             ceeeeeccCC--------------CcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeee
Confidence            4432221100              01125788999999997766432      1335555554333 2333323345678


Q ss_pred             EEEeCCCCCEEEEE-eCCCeEEEEeccccc--------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421          275 VCFGDESGHLIYSG-SDDNLCKVNSVLLLT--------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD  339 (372)
Q Consensus       275 ~~~sp~~~~~l~s~-~~dg~i~vwd~~~~~--------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw  339 (372)
                      ++|+ ++++.|+.+ +..+.|..||+..-.              ........+++.++|++.++..      ..+.|.++
T Consensus       182 ia~s-~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~------~~g~V~~~  254 (319)
T d2dg1a1         182 IALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY------GQGRVLVF  254 (319)
T ss_dssp             EEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE------TTTEEEEE
T ss_pred             eeec-cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc------CCCEEEEE
Confidence            9999 888866544 567899999875210              1112356799999998666542      24566666


Q ss_pred             ecccceEEEE
Q 017421          340 NYFLLRTFYS  349 (372)
Q Consensus       340 ~~~~~~~~~~  349 (372)
                      +- .|+.+..
T Consensus       255 ~p-~G~~l~~  263 (319)
T d2dg1a1         255 NK-RGYPIGQ  263 (319)
T ss_dssp             CT-TSCEEEE
T ss_pred             CC-CCcEEEE
Confidence            63 4555443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-07  Score=85.36  Aligned_cols=200  Identities=11%  Similarity=0.028  Sum_probs=123.0

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---------CCeEEEEECCCC
Q 017421          131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIVDVGSG  201 (372)
Q Consensus       131 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~  201 (372)
                      .|.+++.++.. ..+|.|.+|++.++..........-....+....|+||+++++....         .+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            47777775543 55688999999877442211111112235778899999999887643         578899999988


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCC---------
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSD---------  271 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~---------  271 (372)
                      ....+.....              ....+....|||||+.||... ++.|.+.+...+..++... +....         
T Consensus       102 ~~~~l~~~~~--------------~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v  166 (465)
T d1xfda1         102 DPQSLDPPEV--------------SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (465)
T ss_dssp             CCEECCCTTC--------------CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             ceeeccCccC--------------CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchh
Confidence            7654432111              112455678999999998876 6788888887776544432 22111         


Q ss_pred             --------eEEEEEeCCCCCEEEEEeCC-Ce---------------------------------EEEEeccccc------
Q 017421          272 --------VNTVCFGDESGHLIYSGSDD-NL---------------------------------CKVNSVLLLT------  303 (372)
Q Consensus       272 --------v~~~~~sp~~~~~l~s~~~d-g~---------------------------------i~vwd~~~~~------  303 (372)
                              -.++.|| |||+.||....| ..                                 +.++|+....      
T Consensus       167 yeee~~~~~~a~~WS-PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~  245 (465)
T d1xfda1         167 YEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (465)
T ss_dssp             HHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             hhhhhccccceEEEC-CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEe
Confidence                    2467899 999999876532 22                                 3334432111      


Q ss_pred             ------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          304 ------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       304 ------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                            ....-+..+.|+|++++++......=.  ...+.++|..+++....
T Consensus       246 ~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~--~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQN--VSILTLCDATTGVCTKK  295 (465)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC--EEEEEEEETTTCCEEEE
T ss_pred             ccCcCccccceeeeeEEcCCCeEEEEEEccccc--cceEEEEcCCCCcEEEE
Confidence                  111135678999999876665321111  13466778887765443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.71  E-value=3.2e-06  Score=72.34  Aligned_cols=180  Identities=11%  Similarity=0.058  Sum_probs=114.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cceEEEEECCCCCEEEEEeC---------------
Q 017421          126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASM---------------  189 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---------------  189 (372)
                      ....++|.++++.++++.....|..++..............+.. ..+..+.+.++|++.++-..               
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            46789999999988888777778889987653322111111111 13578999999988776421               


Q ss_pred             CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCeEE--
Q 017421          190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-----ELVAGSSDDCIYVYDLEANKLS--  262 (372)
Q Consensus       190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-----~l~s~s~dg~i~iwd~~~~~~~--  262 (372)
                      .|.|..++.. ++......                 .....+.++|+|++.     ++++-+..+.|..||+.....+  
T Consensus       152 ~G~v~~~~~d-g~~~~~~~-----------------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~  213 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDT-----------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEE-----------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred             CceEEEEeec-CceeEeeC-----------------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce
Confidence            2334444432 22211111                 112457889998764     4455567788999987643221  


Q ss_pred             ----EEeec-CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEE
Q 017421          263 ----LRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       263 ----~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                          ..+.. +......+++. .+|++.++....+.|.+||.+..      ......+++++|.|+++.|.+.
T Consensus       214 ~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         214 KKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             eeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence                11221 22345689998 99998888888899999997622      2334678999999999866655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.71  E-value=2.6e-06  Score=71.06  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=67.7

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-C-----CeEEEEECCCCc
Q 017421          131 QFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S-----PIVHIVDVGSGT  202 (372)
Q Consensus       131 ~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~  202 (372)
                      ..+||  |+.+|..+. +.|.+.|+.+++.. .   +..+...+....|||||+.|+.... +     ..|.+++..++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~---Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-K---IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-E---EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-E---EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            35788  999887654 67999999987543 2   3344456888999999999987643 1     248888888887


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  246 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s  246 (372)
                      ...+........          ..........|+|+|+.|+...
T Consensus        80 ~~~lt~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          80 IKRITYFSGKST----------GRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEECCCCCEEEE----------TTEECSEEEEECTTCCEEEEEC
T ss_pred             eEEeeecCCCcc----------CccccccccccCCCCCEEEEEE
Confidence            655443221110          1122456788999998887643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=8.7e-06  Score=67.43  Aligned_cols=180  Identities=19%  Similarity=0.202  Sum_probs=110.3

Q ss_pred             CCCCCccccCCCCceEEEEECCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-
Q 017421          113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-  188 (372)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  188 (372)
                      .......+..+........|+|+|+.++.... ++.  +..+.........    ............+++++..++..+ 
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  146 (269)
T d2hqsa1          71 ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQNLAFTSD  146 (269)
T ss_dssp             TTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----CCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             ccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccccee----eeeccccccccccccccccceeccc
Confidence            33444566778888999999999999887554 222  3333333332222    222233455667788777665554 


Q ss_pred             CCC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEE
Q 017421          189 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSL  263 (372)
Q Consensus       189 ~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~  263 (372)
                      .+|  .|.+.++..+.......                 .........|+|+++.++..+.++   .+.+.+...+..  
T Consensus       147 ~~g~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--  207 (269)
T d2hqsa1         147 QAGRPQVYKVNINGGAPQRITW-----------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--  207 (269)
T ss_dssp             TTSSCEEEEEETTSSCCEECCC-----------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--
T ss_pred             ccCCceEeeeecccccceeeec-----------------ccccccccccccccceeEEEeecCCceeeeEeecccccc--
Confidence            344  46666666654332221                 223567788999999988766544   355556555543  


Q ss_pred             EeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEeccc-----ccCCCCCeeEEEecc
Q 017421          264 RILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSVLL-----LTRSINPCNKYLFNP  316 (372)
Q Consensus       264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~~~-----~~~~~~~v~~~~~s~  316 (372)
                      ....+........|+ |||+.|+..+.   ...|.++++..     +......+..++|+|
T Consensus       208 ~~~~~~~~~~~p~~S-PDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         208 QVLSSTFLDETPSLA-PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECCCSSSCEEEEEC-TTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             eEeecCccccceEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            333455667788999 99998875543   34578888762     234455677788888

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.61  E-value=3.1e-05  Score=66.13  Aligned_cols=200  Identities=15%  Similarity=0.083  Sum_probs=120.8

Q ss_pred             EeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421          107 MLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQ----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  180 (372)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (372)
                      ++.++.+...  ...+.........+++++||+++++...    .+.+...+......... .........+..+.+.++
T Consensus        62 ~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~nd~~~d~~  140 (319)
T d2dg1a1          62 NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI-IEDLSTAYCIDDMVFDSK  140 (319)
T ss_dssp             EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE-ECSSSSCCCEEEEEECTT
T ss_pred             EEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee-ccCCCcccCCcceeEEec
Confidence            4444544332  2223445667889999999998877543    23355555544422221 111122235788999999


Q ss_pred             CCEEEEEeC------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE-EEEeCCCeEEE
Q 017421          181 QRHLVYASM------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYV  253 (372)
Q Consensus       181 ~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~i  253 (372)
                      |++.++...      .+.+..++...+.......                 .-...+.++|+|+++.| ++-+..+.|..
T Consensus       141 G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-----------------~~~~pnGia~s~dg~~lyvad~~~~~I~~  203 (319)
T d2dg1a1         141 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------------NISVANGIALSTDEKVLWVTETTANRLHR  203 (319)
T ss_dssp             SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------------EESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             cceeecccccccccCcceeEEEecccceeEEEee-----------------ccceeeeeeeccccceEEEecccCCceEE
Confidence            987665432      2335555554433222211                 01246789999999866 45566789999


Q ss_pred             EECCCC-eEEE-------EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cc------cCCCCCeeEEEe
Q 017421          254 YDLEAN-KLSL-------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LL------TRSINPCNKYLF  314 (372)
Q Consensus       254 wd~~~~-~~~~-------~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~------~~~~~~v~~~~~  314 (372)
                      ||+... ....       ...........+++. .+|++.++....+.|.+||..     .+      ..+...+++++|
T Consensus       204 ~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~  282 (319)
T d2dg1a1         204 IALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQF  282 (319)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred             EEEcCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEE
Confidence            998642 1111       111122345689998 999988888889999999965     11      133446789999


Q ss_pred             ccCCCeEEEEe
Q 017421          315 NPCNKYLIIYL  325 (372)
Q Consensus       315 s~~g~~l~~~~  325 (372)
                      .+++..+++.+
T Consensus       283 ~~~~~~~~~t~  293 (319)
T d2dg1a1         283 IPGTNQLIICS  293 (319)
T ss_dssp             CTTSCEEEEEE
T ss_pred             eCCCCEEEEEc
Confidence            99887776553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=5e-05  Score=64.04  Aligned_cols=198  Identities=14%  Similarity=0.046  Sum_probs=126.2

Q ss_pred             EeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-cCCcceEEEEECCCCCEEE
Q 017421          107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLV  185 (372)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~  185 (372)
                      .++++.+.............+.++++.++|+++++ +.+ .|.++|..+++...-..... .....+..+.+.|+|++.+
T Consensus        41 ~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~  118 (295)
T d2ghsa1          41 ELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWI  118 (295)
T ss_dssp             EEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEE
T ss_pred             EEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEE
Confidence            44555554444444445677899999999887765 454 58899998875432211111 1223588999999999777


Q ss_pred             EEeC----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCC-
Q 017421          186 YASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEAN-  259 (372)
Q Consensus       186 ~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iwd~~~~-  259 (372)
                      +...    .+.-.+|.+..++......-                 ....+.++|+++++.++ +-+..+.|..|++... 
T Consensus       119 ~~~~~~~~~~~g~l~~~~~g~~~~~~~~-----------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         119 GTMGRKAETGAGSIYHVAKGKVTKLFAD-----------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             EEEETTCCTTCEEEEEEETTEEEEEEEE-----------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             EeccccccccceeEeeecCCcEEEEeec-----------------cCCcceeeecCCCceEEEeecccceeeEeeecccc
Confidence            6532    23445666666654322211                 12467899999998665 5556788999987521 


Q ss_pred             -----e--EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEec-cCCCeEEEE
Q 017421          260 -----K--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFN-PCNKYLIIY  324 (372)
Q Consensus       260 -----~--~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s-~~g~~l~~~  324 (372)
                           +  ......+..+....+++. .+|++.++.-..+.|..||..     .+.-....+++++|- |+.+.|++.
T Consensus       182 ~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         182 GLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence                 1  112223344567889998 899988877778899999975     122233568999995 777766654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=2e-05  Score=65.98  Aligned_cols=160  Identities=11%  Similarity=0.129  Sum_probs=114.1

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421          123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  202 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  202 (372)
                      .......+++.++|+++++....+.+.+++.... .+...- ...+......+++.++++.+++....+.|++||.....
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~g-~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~  189 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFG-CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY  189 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEE-CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccCCc-eeeccc-ccccccccceeeeccceeEEeeeccccceeeeecCCce
Confidence            3456788999999998888887788888886543 333322 23344567889999999988888888999999976432


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecC--CCCeEEEEEeC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAH--TSDVNTVCFGD  279 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp  279 (372)
                      . ....  .            .+.......|++.|+|+.+++-.. ++.|.+|+. +++.+.++...  ......|++. 
T Consensus       190 ~-~~~g--~------------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~-  252 (279)
T d1q7fa_         190 L-RQIG--G------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM-  252 (279)
T ss_dssp             E-EEES--C------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE-
T ss_pred             e-eeec--c------------cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe-
Confidence            2 1110  0            123346788999999997776543 457999985 57776666432  3467899999 


Q ss_pred             CCCCEEEEEeCCCeEEEEecccc
Q 017421          280 ESGHLIYSGSDDNLCKVNSVLLL  302 (372)
Q Consensus       280 ~~~~~l~s~~~dg~i~vwd~~~~  302 (372)
                      ++|.+++ ++.++.|++|....+
T Consensus       253 ~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         253 DDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TTTEEEE-EETTTEEEEEECSCC
T ss_pred             CCCcEEE-EeCCCeEEEEEeeee
Confidence            8887554 568899999998755

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.7e-06  Score=76.99  Aligned_cols=192  Identities=11%  Similarity=0.071  Sum_probs=109.7

Q ss_pred             ceEEEEECCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421          126 RAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  196 (372)
Q Consensus       126 ~v~~~~~s~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  196 (372)
                      .+....||||+++++...         ..+.+.++|+.++.... +.........+....|||||+.||... ++.|.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            566778999999988764         35678999998874322 212222333566789999999999875 6789898


Q ss_pred             ECCCCceeeecceeecccccceeccCCCCc----cccEEEEEEcCCCCEEEEEeCC-Ce---------------------
Q 017421          197 DVGSGTMESLANVTEIHDGLDFSAADDGGY----SFGIFSLKFSTDGRELVAGSSD-DC---------------------  250 (372)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~i~~~~~sp~~~~l~s~s~d-g~---------------------  250 (372)
                      +..++....+..  ....+..+.+..+-.+    ...-..+-|||||++||....| ..                     
T Consensus       140 ~~~~~~~~~lt~--~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         140 AHVGKQAIRVVS--TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             SSSSSCCEEEEC--CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             ecCCCceEEEec--ccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            887776544332  1111212221111000    0112567899999999876422 22                     


Q ss_pred             ------------EEEEECCCCeEEEEee------cCCCCeEEEEEeCCCCCEEEEEe-CC---CeEEEEeccccc-----
Q 017421          251 ------------IYVYDLEANKLSLRIL------AHTSDVNTVCFGDESGHLIYSGS-DD---NLCKVNSVLLLT-----  303 (372)
Q Consensus       251 ------------i~iwd~~~~~~~~~~~------~~~~~v~~~~~sp~~~~~l~s~~-~d---g~i~vwd~~~~~-----  303 (372)
                                  +.++|+.++.......      .....+..+.|+ +++++++... .+   ..|.++|..+..     
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~-~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc-CCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence                        3344444332211111      111235678898 7887666543 22   246677776332     


Q ss_pred             --CCCCCe----eEEEeccCCCeEE
Q 017421          304 --RSINPC----NKYLFNPCNKYLI  322 (372)
Q Consensus       304 --~~~~~v----~~~~~s~~g~~l~  322 (372)
                        ....+|    ....|+|+|+.++
T Consensus       297 ~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         297 EDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             EEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             EEcCCceEeccCCceeEccCCCeeE
Confidence              112222    3468899988543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.46  E-value=8.7e-06  Score=69.54  Aligned_cols=159  Identities=14%  Similarity=0.101  Sum_probs=103.0

Q ss_pred             eEEEEECCCCCEEEEEeC---------------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC-----EEEE
Q 017421          127 AYVSQFSADGSLFVAGFQ---------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-----HLVY  186 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~  186 (372)
                      .+.+++.++|++.++-..               .|.|..++.+.. .... .   ..-.....++|+|++.     ++++
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~-~---~~~~~pNGi~~~~d~d~~~~~lyv~  193 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQV-D---TAFQFPNGIAVRHMNDGRPYQLIVA  193 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEE-E---EEESSEEEEEEEECTTSCEEEEEEE
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-eeEe-e---CCcceeeeeEECCCCCcceeEEEEE
Confidence            578999999998877432               234544554322 2211 1   1111356889988764     4445


Q ss_pred             EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421          187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL  266 (372)
Q Consensus       187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  266 (372)
                      -+..+.|..||+................+         ........+++.++|++.++....+.|.+||.+.++....+.
T Consensus       194 d~~~~~i~~~d~~~~g~~~~~~~~~~~~~---------~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~  264 (314)
T d1pjxa_         194 ETPTKKLWSYDIKGPAKIENKKVWGHIPG---------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             ETTTTEEEEEEEEETTEEEEEEEEEECCC---------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred             eecccceEEeeccCccccceeeEEEEccc---------cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE
Confidence            56688899998764433221111110000         112245679999999988888888999999998887777776


Q ss_pred             cCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEecc
Q 017421          267 AHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       267 ~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~  300 (372)
                      .....+++++|. ++++ ++++.+.++.|...++.
T Consensus       265 ~p~~~~t~~afg-~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         265 CPFEKPSNLHFK-PQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CSSSCEEEEEEC-TTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEEEe-CCCCEEEEEECCCCcEEEEECC
Confidence            666788999998 7886 55666677888888765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.34  E-value=0.00021  Score=59.97  Aligned_cols=185  Identities=12%  Similarity=0.078  Sum_probs=118.2

Q ss_pred             EEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421          128 YVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  206 (372)
Q Consensus       128 ~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  206 (372)
                      -+..|++.. .++.+--..+.|..||..++.....     .....+.++.+.++++++++ +.+ .+.++|..+++....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-----~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH-----ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-----ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-----ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEE
Confidence            456788754 4444544678899999988844321     12235788999988876665 444 588999998876443


Q ss_pred             cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCC
Q 017421          207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  282 (372)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  282 (372)
                      ......            .....++.+.+.|+|++.++...+    +.-.+|.+..++....... -.....++|+ +++
T Consensus        94 ~~~~~~------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s-~d~  159 (295)
T d2ghsa1          94 AELESD------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFS-PDG  159 (295)
T ss_dssp             ECSSTT------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEEC-TTS
T ss_pred             eeeecC------------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeec-CCC
Confidence            322111            122468899999999977765432    3456677777765444433 3456789999 777


Q ss_pred             CEEE-EEeCCCeEEEEecccc--------------cCCCCCeeEEEeccCCCeEEEE-eeeeEEEee
Q 017421          283 HLIY-SGSDDNLCKVNSVLLL--------------TRSINPCNKYLFNPCNKYLIIY-LILVISIYS  333 (372)
Q Consensus       283 ~~l~-s~~~dg~i~vwd~~~~--------------~~~~~~v~~~~~s~~g~~l~~~-~~~~~~~~d  333 (372)
                      +.++ +-+..+.|..|++..-              .........+++..+|++.++. ..+.|..||
T Consensus       160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            7554 5556788998887411              1223456788999999866654 333444445

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=0.0025  Score=55.09  Aligned_cols=189  Identities=8%  Similarity=-0.052  Sum_probs=113.9

Q ss_pred             EEEECC---CCCEEEEEe-CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCC------------
Q 017421          129 VSQFSA---DGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMS------------  190 (372)
Q Consensus       129 ~~~~s~---~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d------------  190 (372)
                      .+.+..   ||++|++.. .+..|-+.|+.+.+..... .. .....+..+...+  +..+++.++..            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi-~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL-EI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-EC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEE-ec-CCCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence            345543   788887665 5788999999988654422 22 2233467766654  55567766653            


Q ss_pred             ------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC---------------
Q 017421          191 ------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---------------  249 (372)
Q Consensus       191 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg---------------  249 (372)
                            +.+.+.|..+.+........                 .....++++|+|+++++.+.+.               
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V~-----------------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D  229 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLVS-----------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  229 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEES-----------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             chhhcceEEEEEecCCceEEEEeeeC-----------------CChhccccCCCCCEEEEEeccccCCcchhhcccccce
Confidence                  23567788776654333321                 1345688999999988776431               


Q ss_pred             eEEEE-----------------------ECCCC---eEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecccc
Q 017421          250 CIYVY-----------------------DLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLL  302 (372)
Q Consensus       250 ~i~iw-----------------------d~~~~---~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~  302 (372)
                      .+.++                       |.++.   ..+..+... .....+.++ |||+++++++ .+.++.|+|++.+
T Consensus       230 ~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vS-PDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         230 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEEC-CCCCEEEEeCCcCCcEEEEEehhh
Confidence            13333                       33321   111222211 234678899 9999888766 6899999999743


Q ss_pred             c-----------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          303 T-----------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       303 ~-----------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      .                 ...-....-+|+..|. ..++     -.-|.+|.-|++...
T Consensus       308 ~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-ayts-----lfids~v~kw~~~~~  360 (459)
T d1fwxa2         308 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-AYTS-----LFLDSQVVKWNIEDA  360 (459)
T ss_dssp             HHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-EEEE-----ETTTTEEEEEEHHHH
T ss_pred             hhhhcccCCccccEEeecccCcCccccccCCCce-EEEE-----eeccceEEEEecchh
Confidence            2                 1222345567777774 3333     114899999998544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.57  E-value=0.0053  Score=52.96  Aligned_cols=182  Identities=14%  Similarity=0.152  Sum_probs=113.9

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeeecccC------------------------------------Ccce--EEEEECC-
Q 017421          139 FVAGFQASQIRIYDVERGWKIQKDILAKSL------------------------------------RWTV--TDTSLSP-  179 (372)
Q Consensus       139 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------------------------------------~~~v--~~~~~~~-  179 (372)
                      |.+|+..|+|+|+-+.+++.+...-.+...                                    .+..  ..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            557788888888888887665543211100                                    0011  1344443 


Q ss_pred             --CCCEEEEEe-CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEc--CCCCEEEEEeCC------
Q 017421          180 --DQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSD------  248 (372)
Q Consensus       180 --~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--p~~~~l~s~s~d------  248 (372)
                        ||+++++.. .+++|.+-|+++.++..+...+..               ..+..+...  |...|++.++.+      
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---------------~~~HG~r~~~~p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---------------KGIHGLRPQKWPRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---------------CSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCC---------------CCCceeecccCCCeEEEEccCccccccCC
Confidence              788887776 478999999999887665544322               144555544  344577666553      


Q ss_pred             ------------CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC---------------eEEEEecc-
Q 017421          249 ------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---------------LCKVNSVL-  300 (372)
Q Consensus       249 ------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg---------------~i~vwd~~-  300 (372)
                                  +.+.++|..+.+....+.- .+....+.++ ++|+++++.+.+.               .+.++++. 
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s-~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r  238 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  238 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             CCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccC-CCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence                        2367889998887766653 3456788999 9999998877531               24445542 


Q ss_pred             ----------------------ccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421          301 ----------------------LLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF  342 (372)
Q Consensus       301 ----------------------~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~  342 (372)
                                            ...        ........+..+|||++++++..     .++++.+.|+.
T Consensus       239 ie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK-----Ls~tVSViD~~  305 (459)
T d1fwxa2         239 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK-----LSPTVTVLDVT  305 (459)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT-----TSSBEEEEEGG
T ss_pred             hHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC-----cCCcEEEEEeh
Confidence                                  100        11234578899999999998841     35666666654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.36  E-value=0.00072  Score=55.47  Aligned_cols=87  Identities=15%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             EcCC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC-----eEEEEeccccc---
Q 017421          235 FSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN-----LCKVNSVLLLT---  303 (372)
Q Consensus       235 ~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg-----~i~vwd~~~~~---  303 (372)
                      .+||  |+.++..+ ++.|.+.|+..++. ..+..+...+...+|| |||+.||.... ++     .|.+++.....   
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            4688  99888765 57799999998876 4566677788999999 99998886532 22     35555554221   


Q ss_pred             ---------CCCCCeeEEEeccCCCeEEEE
Q 017421          304 ---------RSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       304 ---------~~~~~v~~~~~s~~g~~l~~~  324 (372)
                               ........+.|+|+|+.|+..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEE
Confidence                     112345678999999998865

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.83  E-value=0.0078  Score=51.71  Aligned_cols=159  Identities=15%  Similarity=0.106  Sum_probs=93.7

Q ss_pred             eEEEEECCCCCEEEEEeCCC-----------cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-CeEE
Q 017421          127 AYVSQFSADGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVH  194 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~  194 (372)
                      +.......+|+.++.|+.+.           .+.+||..++.-.........+........+.++++.++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34445566888888887531           37799998874322211222232234567888999999988664 5799


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEEeec-
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILA-  267 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~-  267 (372)
                      +||..+.............               .-..++..+||++++.|+.+      ..+.+||..+.+-...-.. 
T Consensus       102 ~yd~~~~~w~~~~~~~~~r---------------~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~  166 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVAR---------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK  166 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCC---------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSC
T ss_pred             EecCccCcccccccccccc---------------cccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCc
Confidence            9999887654332221111               22345667899998888643      3589999988763221100 


Q ss_pred             --------CC----CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421          268 --------HT----SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL  300 (372)
Q Consensus       268 --------~~----~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~  300 (372)
                              +.    ..-....+..++|+.++.++..+.+.+++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         167 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             SGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             ccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence                    00    0011122322577777777777766666654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.12  Score=41.67  Aligned_cols=199  Identities=7%  Similarity=-0.061  Sum_probs=114.6

Q ss_pred             CCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCC
Q 017421          124 TSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG  201 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~  201 (372)
                      ...+.+++|++..+.|... ..++.|+..++........   .......+.++++..-++.|..+ ...+.|.+.++...
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v---~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI---IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE---ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE---EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            3457789999877776655 4567788888876533221   11122357889998766666654 45678999998866


Q ss_pred             ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421          202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFG  278 (372)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  278 (372)
                      ....+...                ....+..++++|...++.-...   ...|..-++............-.....+++.
T Consensus       112 ~~~~l~~~----------------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD  175 (263)
T d1npea_         112 QRRVLFDT----------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD  175 (263)
T ss_dssp             SCEEEECS----------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred             eEEEEecc----------------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEe
Confidence            54322210                1135788999998777764432   2335555665443333333333567899998


Q ss_pred             CCCCCEEEEE-eCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421          279 DESGHLIYSG-SDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS  349 (372)
Q Consensus       279 p~~~~~l~s~-~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~  349 (372)
                       +.++.|+.+ ...+.|...++.-..     .......++++.  +..|..+..     ....|..-|..+++.+..
T Consensus       176 -~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~-----~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         176 -AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDW-----KTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             -TTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEET-----TTTEEEEEETTTTEEEEE
T ss_pred             -ecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEEC-----CCCEEEEEECCCCccceE
Confidence             556666555 466788888875211     111223455554  334443310     125555556666665533

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.13  Score=41.48  Aligned_cols=171  Identities=10%  Similarity=0.074  Sum_probs=98.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEE--EEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeecceeecc
Q 017421          137 SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIH  213 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~  213 (372)
                      .+|+.+.. +.|+-.+++.....  ........+...+.+++|.+..+.|..+. .++.|+..++..+....+...    
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----   76 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----   76 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----
Confidence            34444433 56777777543211  00011112223577899998877777664 467888888876654332210    


Q ss_pred             cccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 017421          214 DGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN  292 (372)
Q Consensus       214 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg  292 (372)
                                  ....+..+++..-+..|. +-...+.|.+.++........+......+..+++.|..|.++.+-...+
T Consensus        77 ------------~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~  144 (263)
T d1npea_          77 ------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD  144 (263)
T ss_dssp             ------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred             ------------ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCC
Confidence                        112578889887666665 4455678999999865543333334467899999944554444433323


Q ss_pred             eEEEE--eccc------ccCCCCCeeEEEeccCCCeEEEE
Q 017421          293 LCKVN--SVLL------LTRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       293 ~i~vw--d~~~------~~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      ..+|+  ++.-      ....-.....+++.+.++.|..+
T Consensus       145 ~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         145 NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             CcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEE
Confidence            33444  3321      11223455788888887777655

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.25  Score=42.81  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             CCCceEEEEECCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-------
Q 017421          123 TTSRAYVSQFSADGSLFVAG-FQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-------  190 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~-~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  190 (372)
                      +.-.+..+++|||++++|.+ +.+    ..|+++|+.+++.+...+...    ....+.|.+|++.|+....+       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~----~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV----KFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE----CSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc----cccceEEcCCCCEEEEEEeccccCccc
Confidence            33345567899999998854 223    379999999997665433211    13568999999988765433       


Q ss_pred             ---------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE
Q 017421          191 ---------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  245 (372)
Q Consensus       191 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~  245 (372)
                               ..|..+.+.+............            .....+..+..++++++++..
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~------------d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFP------------DEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCT------------TCTTCEEEEEECTTSCEEEEE
T ss_pred             ccccccCCcceEEEEECCCCccccccccccc------------cCCceEEeeeccCCcceeeEE
Confidence                     2577777766543221111110            112246677889999988643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.29  Score=39.31  Aligned_cols=160  Identities=8%  Similarity=-0.082  Sum_probs=95.9

Q ss_pred             CCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeE--EEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEEC
Q 017421          123 TTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDV  198 (372)
Q Consensus       123 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~  198 (372)
                      ....+.+++|++.++.|.-.. ..+.|.-.++.....  ..... .......+.++++.+.++.|..+ ...+.|.+.++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~-~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEE-EeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            345677899999887776554 456677666653211  11111 11222347788988866666655 44678999999


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVC  276 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  276 (372)
                      ..........                ........++.+|...+|.-..  ..+.|...++............-..+..++
T Consensus       107 ~g~~~~~~~~----------------~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~  170 (266)
T d1ijqa1         107 KGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  170 (266)
T ss_dssp             TSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred             CCceEEEEEc----------------CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence            8665432221                1123578899998665665443  345677777765444333333445678999


Q ss_pred             EeCCCCCEEEEE-eCCCeEEEEecc
Q 017421          277 FGDESGHLIYSG-SDDNLCKVNSVL  300 (372)
Q Consensus       277 ~sp~~~~~l~s~-~~dg~i~vwd~~  300 (372)
                      +. +.++.|+.+ ...+.|...++.
T Consensus       171 iD-~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         171 LD-LLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             EE-TTTTEEEEEETTTTEEEEEETT
T ss_pred             ee-ccccEEEEecCCcCEEEEEECC
Confidence            99 666666555 456788888875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.91  E-value=0.38  Score=40.20  Aligned_cols=185  Identities=9%  Similarity=0.019  Sum_probs=100.1

Q ss_pred             eEEEEECCCCCEEEEEeC------------CCcEEEEeCCCCeEEEEeeecccC-----CcceEEEEE--CCCCCE-EEE
Q 017421          127 AYVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKSL-----RWTVTDTSL--SPDQRH-LVY  186 (372)
Q Consensus       127 v~~~~~s~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~--~~~~~~-l~~  186 (372)
                      .-.+...|+|..+++++.            .|.|.++|+.+...........+.     .-....+.+  .++++. |++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            345777888877665532            388999998765332222111111     112344444  445553 444


Q ss_pred             Ee---CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---------------C
Q 017421          187 AS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------------D  248 (372)
Q Consensus       187 ~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---------------d  248 (372)
                      ..   ...+|.++++........  .......         ......+.+++..++.+++|-..               -
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~--~~~~v~~---------~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLL--HLKTIRH---------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEE--EEEEECC---------TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred             EeccCCCceeEEEEEeCCCCeEE--EEeecCC---------ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcC
Confidence            32   345688887754432111  1111100         12235788888888888887321               1


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc--------CCCCCeeEEEecc-CC
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT--------RSINPCNKYLFNP-CN  318 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~--------~~~~~v~~~~~s~-~g  318 (372)
                      +...+|..+.++..... ..-...+.++++ +++++|+++. ..+.|++|++..-.        .....+-.+.+.+ +|
T Consensus       186 ~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s-~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g  263 (340)
T d1v04a_         186 AWSFVTYYSPNDVRVVA-EGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG  263 (340)
T ss_dssp             CCEEEEEECSSCEEEEE-EEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred             CceeEEEEcCCceEEEc-CCCCccceeEEC-CCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCC
Confidence            23344444444332222 233567899999 8888776654 67889999886211        2234456677765 45


Q ss_pred             CeEEEE
Q 017421          319 KYLIIY  324 (372)
Q Consensus       319 ~~l~~~  324 (372)
                      .+.+++
T Consensus       264 ~lwva~  269 (340)
T d1v04a_         264 DLWVGC  269 (340)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            555554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.83  E-value=0.19  Score=45.33  Aligned_cols=52  Identities=12%  Similarity=0.203  Sum_probs=35.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEEeCCCCC-EEEEEeC
Q 017421          238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGH-LIYSGSD  290 (372)
Q Consensus       238 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~-~l~s~~~  290 (372)
                      .+.++++|+.||.++.+|.++|+.+.++..... .-.-+.|. .+|+ +|++...
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~-~dGkqyv~v~aG  521 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE-LAGRQYVAIMAG  521 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETTEEEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEE-ECCEEEEEEEeC
Confidence            356788899999999999999999988774221 11124555 5665 5554443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.47  E-value=0.57  Score=39.06  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=82.3

Q ss_pred             EEEECCCCCEEEEEe------------CCCeEEEEECCCCceeeecce-e-ecccccceeccCCCCccccEEEEEE--cC
Q 017421          174 DTSLSPDQRHLVYAS------------MSPIVHIVDVGSGTMESLANV-T-EIHDGLDFSAADDGGYSFGIFSLKF--ST  237 (372)
Q Consensus       174 ~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~h~~~i~~~~~--sp  237 (372)
                      .+...|+|..+++++            ..|.|.++|+.+......... . .......|.|          ..+..  .+
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~P----------hGi~l~~~~  108 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNP----------HGISTFIDD  108 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCE----------EEEEEEECT
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceec----------cceeEEEcC
Confidence            455556655554443            148899999876543222111 1 1111122222          23332  45


Q ss_pred             CCCE-EEEEe---CCCeEEEEECCCCe--EE--EEee-cCCCCeEEEEEeCCCCCEEEEEe-----------------CC
Q 017421          238 DGRE-LVAGS---SDDCIYVYDLEANK--LS--LRIL-AHTSDVNTVCFGDESGHLIYSGS-----------------DD  291 (372)
Q Consensus       238 ~~~~-l~s~s---~dg~i~iwd~~~~~--~~--~~~~-~~~~~v~~~~~sp~~~~~l~s~~-----------------~d  291 (372)
                      +|+. |++..   ...+|.+|++....  ..  .++. ......+.+++. .++.+++|-.                 .-
T Consensus       109 dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~-~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~  187 (340)
T d1v04a_         109 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAW  187 (340)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred             CCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe-cCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence            6653 33332   35678888875432  21  2222 122457888888 7888888731                 11


Q ss_pred             CeEEEEeccccc---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421          292 NLCKVNSVLLLT---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL  344 (372)
Q Consensus       292 g~i~vwd~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~  344 (372)
                      +.+..||.....   ..-...+.++++||+++|+++.     .....|+.|+....
T Consensus       188 g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~-----t~~~~i~~y~~~~~  238 (340)
T d1v04a_         188 SFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAE-----LLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEE-----GGGTEEEEEEECTT
T ss_pred             eeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEe-----CCCCeEEEEEeCCC
Confidence            234444543221   2234568999999999988873     13456666665433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.45  E-value=0.85  Score=40.99  Aligned_cols=192  Identities=15%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             EEEECCCCCEEEEEeC----------------CCcEEEEeCCCCeEEEEeeecccCC------cceEEEEECCCCC---E
Q 017421          129 VSQFSADGSLFVAGFQ----------------ASQIRIYDVERGWKIQKDILAKSLR------WTVTDTSLSPDQR---H  183 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~---~  183 (372)
                      ..++.++...+..+..                ...+.-.|.++++.........+..      .......+..+++   .
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~  318 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             ccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccc
Confidence            3466777776665533                2457778888887665433221110      1111222222443   4


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecceeecc-------------------------cccceeccCCCCccccEEEEEEcCC
Q 017421          184 LVYASMSPIVHIVDVGSGTMESLANVTEIH-------------------------DGLDFSAADDGGYSFGIFSLKFSTD  238 (372)
Q Consensus       184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~h~~~i~~~~~sp~  238 (372)
                      ++.++.+|.+++.|..+++.+.........                         .+....+...+++.-.  ..+++|+
T Consensus       319 v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~--~~a~dP~  396 (571)
T d2ad6a1         319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQG--VDSYDPE  396 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSC--BCEEETT
T ss_pred             eeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccc--cceECCC
Confidence            567788999999999999875322111000                         0001111111222211  2456676


Q ss_pred             CCEEEEEeCC-------------------------------------CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC
Q 017421          239 GRELVAGSSD-------------------------------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  281 (372)
Q Consensus       239 ~~~l~s~s~d-------------------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~  281 (372)
                      ...++....+                                     |.|.-+|+.+++.+.+...- .+..+-..+ ..
T Consensus       397 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~-Ta  474 (571)
T d2ad6a1         397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLY-TK  474 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEE-ET
T ss_pred             CceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeE-ec
Confidence            6655543322                                     46777888888877665422 222211122 34


Q ss_pred             CCEEEEEeCCCeEEEEecccccC-----CCCCe--eEEEeccCCC-eEEEE
Q 017421          282 GHLIYSGSDDNLCKVNSVLLLTR-----SINPC--NKYLFNPCNK-YLIIY  324 (372)
Q Consensus       282 ~~~l~s~~~dg~i~vwd~~~~~~-----~~~~v--~~~~~s~~g~-~l~~~  324 (372)
                      +.++++|+.||.++-+|.++.+.     ....+  .-+.|..||+ |+++.
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEE
Confidence            66888899999999999986541     11111  2255666776 45444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.40  E-value=0.39  Score=43.28  Aligned_cols=50  Identities=14%  Similarity=0.054  Sum_probs=34.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEEeCCCCC-EEEEE
Q 017421          238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGH-LIYSG  288 (372)
Q Consensus       238 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~-~l~s~  288 (372)
                      .+.++++|+.|+.++.+|.++|+.+.++..... .-.-+.|. .+|+ ++++.
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~-~dGkqYi~v~  525 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYS-FKGKQYIGSM  525 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEE-ECCEEEEEEE
Confidence            356788899999999999999999988763221 11225565 5665 55443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.37  E-value=0.54  Score=42.37  Aligned_cols=69  Identities=10%  Similarity=0.086  Sum_probs=39.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeC------CCeEEEEECCCCceeee
Q 017421          137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESL  206 (372)
Q Consensus       137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~vwd~~~~~~~~~  206 (372)
                      ..++.++.|+.+.-.|..+++.+............+. +.-.|  -+..+++++.      .|.|..+|.++|+.+-.
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  205 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceee
Confidence            3567778889898889998877654332211111111 11111  1234444432      46799999999887544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.21  E-value=0.36  Score=43.56  Aligned_cols=51  Identities=14%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe-EEEEEeCCCCC-EEEEEe
Q 017421          238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-NTVCFGDESGH-LIYSGS  289 (372)
Q Consensus       238 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~sp~~~~-~l~s~~  289 (372)
                      .+.++++|+.||.++.+|.++|+.+.++....... .-+.|. .+|+ +++..+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~-~~GkQYv~v~~  539 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYM-VDGRQYVSVAV  539 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEE-ECCEEEEEEEe
Confidence            46788889999999999999999998876422211 114555 5665 444433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.14  E-value=0.8  Score=39.77  Aligned_cols=57  Identities=11%  Similarity=0.091  Sum_probs=39.0

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec-----ccCCcceEEEEECCC
Q 017421          124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPD  180 (372)
Q Consensus       124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~  180 (372)
                      -...++|+|.||+++|++--..|.|++++..++.........     ...+.....++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            356789999999998887655799999988776433221111     122345788999995

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.85  E-value=1.3  Score=39.80  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCC-e
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNK-Y  320 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~-~  320 (372)
                      |.|.-+|+.+++.+.+...+ .++..-..+ ..+.++++|+.||.++-+|.++.+       .....-.=+.|..+|+ +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~ls-tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeE-EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            57888999999888777643 233322233 456788889999999999998654       1111112256677885 5


Q ss_pred             EEEE
Q 017421          321 LIIY  324 (372)
Q Consensus       321 l~~~  324 (372)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.83  E-value=0.18  Score=42.69  Aligned_cols=115  Identities=13%  Similarity=0.101  Sum_probs=70.8

Q ss_pred             eEEEEECCCCCEEEEEeCCC-----------eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC
Q 017421          172 VTDTSLSPDQRHLVYASMSP-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR  240 (372)
Q Consensus       172 v~~~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  240 (372)
                      +.......+++.++.|+.+.           .+.+||..+++..........             +.......++.++|+
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-------------~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-------------HDMFCPGISMDGNGQ   88 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-------------CCCSSCEEEECTTSC
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC-------------cccceeEEEEecCCc
Confidence            33444555778777777421           367899998875333222111             111233456789999


Q ss_pred             EEEEEeCC-CeEEEEECCCCeEEEEeec-CCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEecc
Q 017421          241 ELVAGSSD-DCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDD------NLCKVNSVL  300 (372)
Q Consensus       241 ~l~s~s~d-g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~l~s~~~d------g~i~vwd~~  300 (372)
                      +++.|+.+ ..+.+||..+..-...-.. ....-.+++.. ++|++++.|+.+      ..+.+||+.
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             EEEeecCCCcceeEecCccCcccccccccccccccceeee-cCCceeeeccccccccccceeeeecCC
Confidence            99988765 5799999988764321111 11222345555 799999988753      358899986

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.63  E-value=0.88  Score=36.84  Aligned_cols=198  Identities=11%  Similarity=0.095  Sum_probs=114.9

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 017421          129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN  208 (372)
Q Consensus       129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  208 (372)
                      +.-.+|..+.||.-+ ..++.|||+++..++.......    +|.-..|-.+ +.|+..+ +..|+-|+++.... +. +
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e----~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~-P~-k  137 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ-PV-K  137 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCC-CE-E
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC----CcEEEEecCC-CEEEEEc-CCceEEEcccCCCC-ch-h
Confidence            344689898887766 4689999999997776544333    6888888754 4555544 46799999964331 11 1


Q ss_pred             eeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe---C----CCeEEEEECCCCeEEEEeecCCCCeEEEEEe--C
Q 017421          209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---S----DDCIYVYDLEANKLSLRILAHTSDVNTVCFG--D  279 (372)
Q Consensus       209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s---~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p  279 (372)
                      ..+-+..+         ....|-.-..+++.++++..+   .    .|.+.+|..+.+. .+.+.+|...-..+.+.  +
T Consensus       138 ~fdR~~~L---------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~  207 (327)
T d1utca2         138 MFDRHSSL---------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNA  207 (327)
T ss_dssp             EEECCGGG---------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCS
T ss_pred             hhhhcccc---------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCC
Confidence            11111111         123677777788898876432   2    2568899988664 36677775443333332  0


Q ss_pred             CCCCEEEEEe---CCCeEEEEeccccc----CCCCCeeEEEecc--------------CCCeEEEEeeeeEEEeeceEEE
Q 017421          280 ESGHLIYSGS---DDNLCKVNSVLLLT----RSINPCNKYLFNP--------------CNKYLIIYLILVISIYSPNILL  338 (372)
Q Consensus       280 ~~~~~l~s~~---~dg~i~vwd~~~~~----~~~~~v~~~~~s~--------------~g~~l~~~~~~~~~~~d~~i~l  338 (372)
                      ....+++.+.   ..+++++.++....    ........+-|.|              .-..+..-+      --|-+.+
T Consensus       208 ~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT------K~G~i~l  281 (327)
T d1utca2         208 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT------KYGYIHL  281 (327)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE------TTSEEEE
T ss_pred             CCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe------cCcEEEE
Confidence            1112333332   33678888886422    1112223333444              333333222      2377899


Q ss_pred             eecccceEEEEEe
Q 017421          339 DNYFLLRTFYSFM  351 (372)
Q Consensus       339 w~~~~~~~~~~~~  351 (372)
                      +|+.++..++.-.
T Consensus       282 yDleTgt~i~~nR  294 (327)
T d1utca2         282 YDLETGTCIYMNR  294 (327)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EEcccccEEEEee
Confidence            9999999887553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.18  E-value=0.39  Score=41.48  Aligned_cols=103  Identities=11%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             CCcceEEEEECCCCCEEEEEeC-C----CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE
Q 017421          168 LRWTVTDTSLSPDQRHLVYASM-S----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  242 (372)
Q Consensus       168 ~~~~v~~~~~~~~~~~l~~~~~-d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l  242 (372)
                      +...+..+.++|++++++.+-. .    -.|+++|+.+++...... ..                .....++|.+|++.|
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~----------------~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER----------------VKFSCMAWTHDGKGM  185 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE----------------ECSCCEEECTTSSEE
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-cc----------------ccccceEEcCCCCEE
Confidence            3334566788999999886532 3    369999999998643221 11                022468899999988


Q ss_pred             EEEeCC----------------CeEEEEECCCCeE--EEEeecC--CCCeEEEEEeCCCCCEEEEE
Q 017421          243 VAGSSD----------------DCIYVYDLEANKL--SLRILAH--TSDVNTVCFGDESGHLIYSG  288 (372)
Q Consensus       243 ~s~s~d----------------g~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~sp~~~~~l~s~  288 (372)
                      +....+                ..|..+.+.+...  ...+...  ...+..+..+ .++++++..
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s-~d~~~l~i~  250 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLS  250 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeecc-CCcceeeEE
Confidence            654422                2588888877532  2233322  2345667777 888887643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.15  E-value=1.3  Score=36.87  Aligned_cols=196  Identities=11%  Similarity=0.074  Sum_probs=105.1

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE------CCCCCEEEEEeC-C---CeEEEEECCCCc-
Q 017421          134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL------SPDQRHLVYASM-S---PIVHIVDVGSGT-  202 (372)
Q Consensus       134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~-d---g~i~vwd~~~~~-  202 (372)
                      |+..+++.....+-|.+||++ |+.+....  .   +.+..+..      .....-+++++. +   ..|.+|.+.... 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--T---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--S---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--c---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            345667766777679999996 54554421  1   13443332      222333555553 2   367788775322 


Q ss_pred             eeeecceeecccccceeccCCCCccccEEEEEE--cCC-CC-EEEEEeCCCeEEEEECC---CC----eEEEEeecCCCC
Q 017421          203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE---AN----KLSLRILAHTSD  271 (372)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~-~~-~l~s~s~dg~i~iwd~~---~~----~~~~~~~~~~~~  271 (372)
                      ...........    ...     -...+..+|+  +|. |. ++++...+|.+..|.+.   .+    +.++.+. -...
T Consensus       112 ~l~~~~~~~~p----~~~-----~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q  181 (353)
T d1h6la_         112 TLQSITDPNRP----IAS-----AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQ  181 (353)
T ss_dssp             EEEECSCSSSC----EEC-----SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSC
T ss_pred             ccccccccccc----ccc-----ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCc
Confidence            11111000000    000     0113556666  664 44 45566678888888763   23    2444554 3457


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------------ccCCCCCeeEEEecc--CCC-eEEEEeeeeEEEeece
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------------LTRSINPCNKYLFNP--CNK-YLIIYLILVISIYSPN  335 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------------~~~~~~~v~~~~~s~--~g~-~l~~~~~~~~~~~d~~  335 (372)
                      +..+.+. +....|+.+-++.-|..++...             .......+..++.-.  ++. +|++++.+     +++
T Consensus       182 ~EGCVvD-de~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG-----~n~  255 (353)
T d1h6la_         182 TEGMAAD-DEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG-----NSS  255 (353)
T ss_dssp             EEEEEEE-TTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG-----GTE
T ss_pred             cceEEEe-CCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC-----CCe
Confidence            8889998 7777888887777665555431             012345667776543  333 66665422     567


Q ss_pred             EEEeecccc-eEEEEEe
Q 017421          336 ILLDNYFLL-RTFYSFM  351 (372)
Q Consensus       336 i~lw~~~~~-~~~~~~~  351 (372)
                      ..++|..+. +-+.+|.
T Consensus       256 f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         256 YAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEESSTTCCEEEEEE
T ss_pred             EEEEecCCCccccceEE
Confidence            777777653 4454554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.97  E-value=1.9  Score=38.57  Aligned_cols=51  Identities=14%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC-eEEEEEeCCCCC-EEEEE
Q 017421          237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGH-LIYSG  288 (372)
Q Consensus       237 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~-~l~s~  288 (372)
                      ..+.++++|+.||.++.+|.++|+.+..+...... -.-+.|. .+|+ +++..
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~-~~G~qYv~i~  547 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE-QDGEQYLGVT  547 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETTEEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEE-ECCEEEEEEE
Confidence            34678888999999999999999999888742221 1125666 6775 55443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.93  E-value=1.7  Score=37.59  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC
Q 017421          171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD  238 (372)
Q Consensus       171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  238 (372)
                      ..++|+|.||++++++--..|.|++++..++....+........    .    ..-......|+|+|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~----~----~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN----D----ADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC----C----TTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCcccc----c----cCCCCceeeEEeCCC
Confidence            47899999999988776457999999988877544433221110    0    012246889999995

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.82  E-value=1.4  Score=39.40  Aligned_cols=74  Identities=14%  Similarity=0.212  Sum_probs=46.7

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccccC-----CCCCe--eEEEeccCCC-e
Q 017421          249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTR-----SINPC--NKYLFNPCNK-Y  320 (372)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~v--~~~~~s~~g~-~  320 (372)
                      |.|.-||+.+++.+.+... ..+...-.+. ..+.++++|+.||.++-+|.++.+.     ....+  .=+.+..+|+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~-TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeE-ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5688899999998877652 2222222333 4567888999999999999986541     11111  1245566775 5


Q ss_pred             EEEE
Q 017421          321 LIIY  324 (372)
Q Consensus       321 l~~~  324 (372)
                      |++.
T Consensus       516 v~v~  519 (560)
T d1kv9a2         516 VAIM  519 (560)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=1.3  Score=35.20  Aligned_cols=170  Identities=10%  Similarity=-0.020  Sum_probs=97.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeecceeeccccc
Q 017421          138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGL  216 (372)
Q Consensus       138 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~  216 (372)
                      +|+.+.. ..|+-.++.+.....-   . .....+.+++|++..+.|.-+. ..+.|...++..............    
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~---~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~----   73 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----   73 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEE---E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----
T ss_pred             EEEEECC-CeEEEEECCCCcceee---e-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe----
Confidence            3444443 4588888876532221   1 2233578899999888777664 456677666653221111110000    


Q ss_pred             ceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeE
Q 017421          217 DFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLC  294 (372)
Q Consensus       217 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i  294 (372)
                              .....+..+++.+.+..|... ...+.|.+.++........+.........++++|..|.++.+-. ..+.|
T Consensus        74 --------~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          74 --------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (266)
T ss_dssp             --------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             --------CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcce
Confidence                    011245678888766655544 45678999999876655555555667899999944555554432 33456


Q ss_pred             EEEecc-----cc-cCCCCCeeEEEeccCCCeEEEE
Q 017421          295 KVNSVL-----LL-TRSINPCNKYLFNPCNKYLIIY  324 (372)
Q Consensus       295 ~vwd~~-----~~-~~~~~~v~~~~~s~~g~~l~~~  324 (372)
                      .-.++.     .+ ...-....++++.+.++.|..+
T Consensus       146 ~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  181 (266)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             eEeccCCCceecccccccceeeEEEeeccccEEEEe
Confidence            555554     11 1223456788888887777655

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.94  E-value=1.4  Score=37.04  Aligned_cols=142  Identities=10%  Similarity=0.059  Sum_probs=77.0

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  204 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  204 (372)
                      ..|..++|+.|  .|++.. ++.+..++...-.......   ....++..+.++|.  .++....++.+.++++..+...
T Consensus        87 p~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~---~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVT---SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             TTEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEE---ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred             CCeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccc---cccccccceecCCc--eeEEEecCCCEEEEEeccCccc
Confidence            36888999744  455544 4668888876542222211   12235788888774  5666777899999999888653


Q ss_pred             eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE-EECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421          205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV-YDLEANKLSLRILAHTSDVNTVCFGDESGH  283 (372)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  283 (372)
                      ....   ...++..        ...+.+++|++.|..++++..++ ..+ -++.....+..-......|.+|.|- .+..
T Consensus       159 ~~~~---~v~~~~~--------~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL-~~~~  225 (381)
T d1xipa_         159 QLAQ---NVTSFDV--------TNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTIL-SPQD  225 (381)
T ss_dssp             EEEE---SEEEEEE--------CSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEES-SSSE
T ss_pred             cccC---CcceEEe--------cCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEe-cCce
Confidence            3321   0000111        12577888888777777764332 111 1111111000000123467788887 5555


Q ss_pred             EEEE
Q 017421          284 LIYS  287 (372)
Q Consensus       284 ~l~s  287 (372)
                      ++++
T Consensus       226 F~vv  229 (381)
T d1xipa_         226 FLAV  229 (381)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.60  E-value=4.5  Score=36.23  Aligned_cols=50  Identities=12%  Similarity=0.138  Sum_probs=34.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEEeCCCCC-EEEEE
Q 017421          238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGH-LIYSG  288 (372)
Q Consensus       238 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~-~l~s~  288 (372)
                      .|.+++.|+.||.++.+|.++|+.+.++..... .-.-+.|. .+|+ +++..
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~-~dGkQYvav~  534 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYT-HKGTQYVAIY  534 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEE-ECCEEEEEEE
Confidence            466788899999999999999999988863221 11124455 5665 45443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.46  E-value=2.9  Score=33.74  Aligned_cols=163  Identities=11%  Similarity=0.060  Sum_probs=96.3

Q ss_pred             CceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC---CEEEEEeC---CC
Q 017421          125 SRAYVSQFSADGSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASM---SP  191 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg  191 (372)
                      ..|-.-..++++++++..+       -.|.+.+|..+....    ....+|-.....+.+.-+.   +.++.+..   .+
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE----EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC----ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence            4566667788899876532       236789999987622    2245665444444333211   23333322   36


Q ss_pred             eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 017421          192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  271 (372)
Q Consensus       192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  271 (372)
                      .+++.++....... .........+.|.+..   ...-.-.+..++.-..+..-+.-|.|++||+.++.++..-.-....
T Consensus       224 kLhIiEig~~~~g~-~~f~kk~vdi~fppea---~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~  299 (327)
T d1utca2         224 KLHIIEVGTPPTGN-QPFPKKAVDVFFPPEA---QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  299 (327)
T ss_dssp             EEEEEECSCCCTTC-CCCCCEEEECCCCTTC---TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEEEEEcCCCccCC-CCCcceeEEEECCccc---cCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCc
Confidence            78888887632110 0111111112222221   1234557788888788888899999999999999998877766667


Q ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEE
Q 017421          272 VNTVCFGDESGHLIYSGSDDNLCKV  296 (372)
Q Consensus       272 v~~~~~sp~~~~~l~s~~~dg~i~v  296 (372)
                      |...+-. .+..=++....+|.|.-
T Consensus       300 iF~~a~~-~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         300 IFVTAPH-EATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEEE-TTTTEEEEEETTSEEEE
T ss_pred             eEEeccC-CCCceEEEECCCCeEEE
Confidence            7655555 44444555557777643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.31  E-value=3.5  Score=34.51  Aligned_cols=173  Identities=13%  Similarity=0.061  Sum_probs=104.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEE
Q 017421          125 SRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  194 (372)
Q Consensus       125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  194 (372)
                      ....-+++++...++++|+.++ +.|..+..          +.........    ..|..++|+.+  .++.. .++.+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEE
Confidence            3466789999888888888775 66776421          1111110111    14888999754  45554 456677


Q ss_pred             EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-----cCC
Q 017421          195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-----AHT  269 (372)
Q Consensus       195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~  269 (372)
                      .++...-........                -..++..+.++|.  .++....++.+.++++..++......     .-.
T Consensus       109 ~~~~~~l~~~~~~~~----------------~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~  170 (381)
T d1xipa_         109 SLDLEELSEFRTVTS----------------FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT  170 (381)
T ss_dssp             EEESSSTTCEEEEEE----------------CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC
T ss_pred             EEEeecccccccccc----------------ccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEec
Confidence            787765332111111                1126788888775  46666678999999998875432211     123


Q ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEE-eccc---c---cCCCCCeeEEEeccCCCeEEEEe
Q 017421          270 SDVNTVCFGDESGHLIYSGSDDNLCKVN-SVLL---L---TRSINPCNKYLFNPCNKYLIIYL  325 (372)
Q Consensus       270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vw-d~~~---~---~~~~~~v~~~~~s~~g~~l~~~~  325 (372)
                      +.+.+++|+ +.|..++++..+. ..+- ++..   +   ......|.++.|-.+..++++.+
T Consensus       171 ~~~~~v~ws-~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         171 NSQLAVLLK-DRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             SSEEEEEET-TSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCceEEEEe-CCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            668899998 8888888874432 2221 2221   1   12345788999998878777663

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.76  E-value=5.4  Score=35.66  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             CCcEEEEeCCCCeEEEEeeeccc-----------------------------------CCcceEEEEECCCCCEEEEEeC
Q 017421          145 ASQIRIYDVERGWKIQKDILAKS-----------------------------------LRWTVTDTSLSPDQRHLVYASM  189 (372)
Q Consensus       145 dg~i~vwd~~~~~~~~~~~~~~~-----------------------------------~~~~v~~~~~~~~~~~l~~~~~  189 (372)
                      .|.|.-+|+.+++.+-+......                                   ....-..+++.+...++..+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            48899999999988766432210                                   0001224566666666666543


Q ss_pred             C----------------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE-cCCC---CEEEEEeCCC
Q 017421          190 S----------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDG---RELVAGSSDD  249 (372)
Q Consensus       190 d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-sp~~---~~l~s~s~dg  249 (372)
                      +                ..|...|+++++..-..... .+....+...      ..+..+.. ..+|   +.++....+|
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~-~~D~Wd~d~~------~~~~l~d~~~~~G~~~~~v~~~~k~G  333 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT-PHDEWDYAGV------NVMMLSEQKDKDGKARKLLTHPDRNG  333 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS-TTCSSCCCCC------CCCEEEEEECTTSCEEEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccce-eccccCCccc------cceeeeeccccccccccceecccccc
Confidence            2                34777888888865433211 1111111111      12222221 2344   3567788889


Q ss_pred             eEEEEECCCCeEEEE
Q 017421          250 CIYVYDLEANKLSLR  264 (372)
Q Consensus       250 ~i~iwd~~~~~~~~~  264 (372)
                      .+.++|-.+++.+..
T Consensus       334 ~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         334 IVYTLDRTDGALVSA  348 (596)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             ceeeecCCCCceeee
Confidence            999999999987654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=84.34  E-value=9.7  Score=31.31  Aligned_cols=131  Identities=15%  Similarity=0.186  Sum_probs=74.7

Q ss_pred             ceEEEEE--CCC-CC-EEEEEeCCCcEEEEeCC---CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421          126 RAYVSQF--SAD-GS-LFVAGFQASQIRIYDVE---RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  198 (372)
Q Consensus       126 ~v~~~~~--s~~-~~-~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  198 (372)
                      .++++|+  ++. |. ++++...+|.+..|.+.   .+...............+-.|.+.+....|+.+-.+.-|+.++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            4777777  664 54 45666778998888763   23222222212223346889999999899999988877776766


Q ss_pred             CCCceeeecceeecccccceeccCCCCccccEEEEEEcC--CCC-EEEEE-eCCCeEEEEECCCC-eEEEEe
Q 017421          199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGR-ELVAG-SSDDCIYVYDLEAN-KLSLRI  265 (372)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~-~l~s~-s~dg~i~iwd~~~~-~~~~~~  265 (372)
                      ............. ..+        ......+-.|+.-.  ++. +|+++ -.+.+..+||.... +.+..+
T Consensus       209 ~~~~~~~~~~i~~-~~g--------~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         209 EPDGGSNGTVIDR-ADG--------RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             STTSCSCCEEEEE-CSS--------SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             ccCCCccceeeec-ccC--------ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            4322111111000 000        01234677777543  333 55544 45788999998764 444444