Citrus Sinensis ID: 017454

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFYI
cccccEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHHHcccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHHHccEEEEEEEcccccccccccccccccEEEEEccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
cccccEEEEEEccccccEccccccccccHHHHHHHHHHHHHcHHccEEEEccccccHHHHHHHccHHHHHHHHHccHccHHHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHcccccEEEEEEEEcccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcccccHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEccccccHHHHHHHHHHHHHHHHHcccEEEEc
mrskdkisyfydgdvgsvyfgpnhpmkphrlcmtHHLVLSYdlhkkmeiyrphkaypvelaqfhsaDYVEFlhritpdtqHLFRQELtkynlgedcpvFENLFEFCQIYAGGTIDAARRLNNQLCDIAInwagglhhakkceasgfcyinDLVLGILELLKYHARVLYIDidvhhgdgveeafYFTDRVMtvsfhkfgdlffpgtgdvkeigeregkfyainvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCgadslagdrlgcfnlsidgHAECVRFVKKfnlpllvtggggytkenvARCWTVETGilldtelpneipeneyikyfapecslripnghivcsFKEIDKFILFNKQILYFIFYI
mrskdkisyfydgdvgSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAInvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLvtggggytkenvARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFYI
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFYI
******ISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFY*
****DKI**FYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFYI
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFYI
***KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFYI
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MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIVCSFKEIDKFILFNKQILYFIFYI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query371 2.2.26 [Sep-21-2011]
Q8H0W2426 Histone deacetylase 9 OS= yes no 0.935 0.814 0.893 0.0
P56517 480 Histone deacetylase 1 OS= yes no 0.913 0.706 0.652 1e-141
Q32PJ8 482 Histone deacetylase 1 OS= yes no 0.913 0.703 0.644 1e-140
O09106 482 Histone deacetylase 1 OS= yes no 0.913 0.703 0.644 1e-140
Q4QQW4 482 Histone deacetylase 1 OS= yes no 0.913 0.703 0.644 1e-140
Q5RAG0 482 Histone deacetylase 1 OS= yes no 0.913 0.703 0.641 1e-139
Q13547 482 Histone deacetylase 1 OS= yes no 0.913 0.703 0.641 1e-139
O42227 480 Probable histone deacetyl N/A no 0.929 0.718 0.615 1e-138
Q55FN5 495 Type-1 histone deacetylas yes no 0.919 0.688 0.641 1e-137
Q94517 521 Histone deacetylase Rpd3 yes no 0.913 0.650 0.629 1e-136
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1 Back     alignment and function desciption
 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/347 (89%), Positives = 330/347 (95%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
           MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHL+L+Y LH KME+YRPHKAYP+E+
Sbjct: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHS DYVEFL RI P+ Q+LF  E+ +YNLGEDCPVFE+LFEFCQ+YAGGTIDAARRL
Sbjct: 61  AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NN+LCDIAINWAGGLHHAKKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVE
Sbjct: 121 NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE 180

Query: 181 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240
           EAFYFTDRVMTVSFHKFGD FFPGTGDVKEIGEREGKFYAINVPLKDGIDD+SF RLF+T
Sbjct: 181 EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRT 240

Query: 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300
           IISKVVE Y PGAIVLQCGADSLA DRLGCFNLSIDGHAECV+FVKKFNLPLLVTGGGGY
Sbjct: 241 IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY 300

Query: 301 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHI 347
           TKENVARCWTVETGILLDTELPNEIPEN+YIKYFAP+ SL+IP GHI
Sbjct: 301 TKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHI 347
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1 SV=1 Back     alignment and function description
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1 Back     alignment and function description
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
147787408430 hypothetical protein VITISV_020659 [Viti 0.935 0.806 0.953 0.0
225453264430 PREDICTED: histone deacetylase 9 [Vitis 0.935 0.806 0.953 0.0
359479384458 PREDICTED: histone deacetylase 9-like [V 0.935 0.757 0.951 0.0
297734830430 unnamed protein product [Vitis vinifera] 0.935 0.806 0.951 0.0
356539296429 PREDICTED: histone deacetylase 9-like [G 0.935 0.808 0.942 0.0
356542722429 PREDICTED: histone deacetylase 9-like [G 0.935 0.808 0.936 0.0
449456108430 PREDICTED: histone deacetylase 9-like [C 0.935 0.806 0.936 0.0
357471905430 Histone deacetylase [Medicago truncatula 0.935 0.806 0.933 0.0
255639849429 unknown [Glycine max] 0.935 0.808 0.936 0.0
224061587429 histone deacetylase [Populus trichocarpa 0.929 0.804 0.939 0.0
>gi|147787408|emb|CAN77816.1| hypothetical protein VITISV_020659 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/347 (95%), Positives = 339/347 (97%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
           MRSKD+ISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSY+LHKKMEIYRPHKAYPVEL
Sbjct: 1   MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHSADYVEFLHRITPDTQHLF  EL +YNLGEDCPVFENLFEFCQIYAGGTIDAARRL
Sbjct: 61  AQFHSADYVEFLHRITPDTQHLFSNELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK+HARVLYIDIDVHHGDGVE
Sbjct: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE 180

Query: 181 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240
           EAFYFTDRVMTVSFHK+GD FFPGTGDVKE GEREGKFYAINVPLKDGIDDTSFTRLFKT
Sbjct: 181 EAFYFTDRVMTVSFHKYGDKFFPGTGDVKETGEREGKFYAINVPLKDGIDDTSFTRLFKT 240

Query: 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300
           II+KVVETY PG IVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
Sbjct: 241 IIAKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300

Query: 301 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHI 347
           TKENVARCWTVETG+LLDTELPNEIPENEYIKYFAPE SL+IPNGHI
Sbjct: 301 TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPEYSLKIPNGHI 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453264|ref|XP_002266492.1| PREDICTED: histone deacetylase 9 [Vitis vinifera] gi|297734674|emb|CBI16725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479384|ref|XP_002270071.2| PREDICTED: histone deacetylase 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734830|emb|CBI17064.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539296|ref|XP_003538135.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356542722|ref|XP_003539814.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449456108|ref|XP_004145792.1| PREDICTED: histone deacetylase 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357471905|ref|XP_003606237.1| Histone deacetylase [Medicago truncatula] gi|355507292|gb|AES88434.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255639849|gb|ACU20217.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224061587|ref|XP_002300554.1| histone deacetylase [Populus trichocarpa] gi|222847812|gb|EEE85359.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
TAIR|locus:2098115426 HDA9 "histone deacetylase 9" [ 0.935 0.814 0.893 4e-177
UNIPROTKB|P56517 480 HDAC1 "Histone deacetylase 1" 0.913 0.706 0.652 2.7e-132
UNIPROTKB|Q32PJ8 482 HDAC1 "Histone deacetylase 1" 0.913 0.703 0.644 6.4e-131
MGI|MGI:108086 482 Hdac1 "histone deacetylase 1" 0.913 0.703 0.644 6.4e-131
RGD|619975 482 Hdac1l "histone deacetylase 1- 0.913 0.703 0.644 6.4e-131
UNIPROTKB|Q13547 482 HDAC1 "Histone deacetylase 1" 0.913 0.703 0.641 1.3e-130
ZFIN|ZDB-GENE-020419-32 480 hdac1 "histone deacetylase 1" 0.913 0.706 0.647 1.7e-130
UNIPROTKB|E2R692 487 HDAC1 "Uncharacterized protein 0.913 0.696 0.639 5.7e-130
UNIPROTKB|F6X8F5 483 HDAC1 "Histone deacetylase" [C 0.913 0.701 0.639 5.7e-130
UNIPROTKB|J9NUI0 489 HDAC1 "Histone deacetylase" [C 0.913 0.693 0.639 5.7e-130
TAIR|locus:2098115 HDA9 "histone deacetylase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1720 (610.5 bits), Expect = 4.0e-177, P = 4.0e-177
 Identities = 310/347 (89%), Positives = 330/347 (95%)

Query:     1 MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
             MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHL+L+Y LH KME+YRPHKAYP+E+
Sbjct:     1 MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM 60

Query:    61 AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
             AQFHS DYVEFL RI P+ Q+LF  E+ +YNLGEDCPVFE+LFEFCQ+YAGGTIDAARRL
Sbjct:    61 AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRL 120

Query:   121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
             NN+LCDIAINWAGGLHHAKKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVE
Sbjct:   121 NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE 180

Query:   181 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240
             EAFYFTDRVMTVSFHKFGD FFPGTGDVKEIGEREGKFYAINVPLKDGIDD+SF RLF+T
Sbjct:   181 EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRT 240

Query:   241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300
             IISKVVE Y PGAIVLQCGADSLA DRLGCFNLSIDGHAECV+FVKKFNLPLLVTGGGGY
Sbjct:   241 IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY 300

Query:   301 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHI 347
             TKENVARCWTVETGILLDTELPNEIPEN+YIKYFAP+ SL+IP GHI
Sbjct:   301 TKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHI 347
GO:0004407 "histone deacetylase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0016575 "histone deacetylation" evidence=IEA;ISS
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-32 hdac1 "histone deacetylase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R692 HDAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X8F5 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI0 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94517HDAC1_DROME3, ., 5, ., 1, ., 9, 80.62940.91370.6506yesno
Q8NW34ACUC_STAAWNo assigned EC number0.31330.91910.8766yesno
Q8H0W2HDA9_ARATH3, ., 5, ., 1, ., 9, 80.89330.93530.8145yesno
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.61060.91100.7331yesno
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.59580.91100.8345yesno
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.64410.91370.7033yesno
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.64110.91370.7033yesno
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.64410.91370.7033yesno
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.64110.91370.7033yesno
Q5HF39ACUC_STAACNo assigned EC number0.31330.91910.8766yesno
Q4SFA0HDAC3_TETNG3, ., 5, ., 1, ., 9, 80.58310.97300.8434N/Ano
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.64410.91370.7033yesno
Q6G8J2ACUC_STAASNo assigned EC number0.31330.91910.8766yesno
Q6GFX3ACUC_STAARNo assigned EC number0.31790.90560.8637yesno
P39067ACUC_BACSUNo assigned EC number0.33040.88670.8501yesno
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.57700.95410.8175yesno
P64376ACUC_STAANNo assigned EC number0.31050.91910.8766yesno
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.65290.91370.7062yesno
Q55FN5HDA11_DICDI3, ., 5, ., 1, ., 9, 80.64130.91910.6888yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.979
3rd Layer3.5.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018995001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (430 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00006031001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (159 aa)
  •   • 0.486
GSVIVG00030810001
SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (424 aa)
   •••• 0.457

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 0.0
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 0.0
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 0.0
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 0.0
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-176
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-171
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 1e-171
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-136
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 1e-109
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 1e-109
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-105
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 2e-95
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 4e-94
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 5e-84
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 2e-45
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 2e-42
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 5e-39
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 4e-31
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 2e-28
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 5e-26
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-23
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 2e-23
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 4e-23
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 3e-22
cd10006409 cd10006, HDAC4, Histone deacetylase 4 4e-22
cd10007420 cd10007, HDAC5, Histone deacetylase 5 1e-20
cd10009379 cd10009, HDAC9, Histone deacetylase 9 2e-20
cd10008378 cd10008, HDAC7, Histone deacetylase 7 1e-19
cd11683337 cd11683, HDAC10, Histone deacetylase 10 9e-16
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 3e-15
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 1e-05
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information 
 Score =  589 bits (1521), Expect = 0.0
 Identities = 208/307 (67%), Positives = 254/307 (82%), Gaps = 1/307 (0%)

Query: 10  FYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYV 69
           FYD DVG+ Y+G  HPMKPHR+ MTH L+LSY L+KKMEIYRP  A   EL +FHS DY+
Sbjct: 1   FYDPDVGNYYYGQGHPMKPHRIRMTHSLILSYGLYKKMEIYRPRPATAEELTKFHSDDYI 60

Query: 70  EFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAI 129
           +FL  ++PD    F+++L ++N+GEDCPVF+ L+E+CQ+YAGG+I AA +LN    DIAI
Sbjct: 61  DFLRSVSPDNMKEFKKQLERFNVGEDCPVFDGLYEYCQLYAGGSIAAAVKLNRGQADIAI 120

Query: 130 NWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRV 189
           NWAGGLHHAKK EASGFCY+ND+VL ILELLKYH RVLYIDID+HHGDGVEEAFY TDRV
Sbjct: 121 NWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 180

Query: 190 MTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETY 249
           MTVSFHKFG+ +F     +++IG  +GK+YA+NVPLKDGIDD S+ ++F+ ++SKV+E +
Sbjct: 181 MTVSFHKFGE-YFFPGTGLRDIGAGKGKYYAVNVPLKDGIDDESYLQIFEPVLSKVMEVF 239

Query: 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCW 309
            P A+VLQCGADSLAGDRLGCFNLSI GHA+CV+FVK FN+PLLV GGGGYT  NVARCW
Sbjct: 240 QPSAVVLQCGADSLAGDRLGCFNLSIKGHAKCVKFVKSFNIPLLVLGGGGYTLRNVARCW 299

Query: 310 TVETGIL 316
           T ET +L
Sbjct: 300 TYETAVL 306

Class I histone deacetylases (HDACs) are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues in histone amino termini to yield a deacetylated histone (EC 3.5.1.98). Enzymes belonging to this group participate in regulation of a number of processes through protein (mostly different histones) modification (deacetylation). Class I histone deacetylases in general act via the formation of large multiprotein complexes. This group includes animal HDAC1, HDAC2, HDAC3, HDAC8, fungal RPD3, HOS1 and HOS2, plant HDA9, protist, archaeal and bacterial (AcuC) deacetylases. Members of this class are involved in cell cycle regulation, DNA damage response, embryonic development, cytokine signaling important for immune response and in posttranslational control of the acetyl coenzyme A synthetase. In mammals, they are known to be involved in progression of various tumors. Specific inhibitors of mammalian histone deacetylases are an emerging class of promising novel anticancer drugs. Length = 306
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 371
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
COG3914620 Spy Predicted O-linked N-acetylglucosamine transfe 87.88
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-110  Score=806.55  Aligned_cols=356  Identities=66%  Similarity=1.206  Sum_probs=348.2

Q ss_pred             CCCeEEEEEcccccCCCCCCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhh
Q 017454            3 SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHL   82 (371)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~   82 (371)
                      ++++|+|+|+++.+.+++|++|||+|.|++++++++..+||.++|++++|..|+.+||.++||++||++|++.++++++.
T Consensus         5 ~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~~   84 (425)
T KOG1342|consen    5 IKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENMET   84 (425)
T ss_pred             CCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             hHHhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHcccccccccccCccCCccccCCCCccccchHHHHHHHHHHh
Q 017454           83 FRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY  162 (371)
Q Consensus        83 ~~~~~~~~~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~~~  162 (371)
                      +.+++++|++++|||+|+++|++|++++||||.||++|.+|++++||||+||+|||++++|+||||+|||++||+.|+|.
T Consensus        85 ~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~  164 (425)
T KOG1342|consen   85 FNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKY  164 (425)
T ss_pred             cchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHHh
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHHHHHHH
Q 017454          163 HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII  242 (371)
Q Consensus       163 ~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~~~~l  242 (371)
                      ++||+|||||+|||||+||+||.++||||+|+|+|+..||||||+..++|.++|+.|+|||||.+|++|+.|..+|++++
T Consensus       165 h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pIi  244 (425)
T KOG1342|consen  165 HKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPII  244 (425)
T ss_pred             CCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877999999999999999999999999999999999999999999


Q ss_pred             HHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhCCCCC
Q 017454          243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELP  322 (371)
Q Consensus       243 ~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg~~~~  322 (371)
                      .++++.|+|++||+|||.|++.+|+||+||||.+|+++|+++++++++|+++|+||||+++++||||+++|++++|+.+|
T Consensus       245 ~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~~  324 (425)
T KOG1342|consen  245 SKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQELP  324 (425)
T ss_pred             HHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhhccCCCcccccCCCCcc--ccHhhhhhhh
Q 017454          323 NEIPENEYIKYFAPECSLRIPNGHIV--CSFKEIDKFI  358 (371)
Q Consensus       323 ~~~p~~~~~~~~~p~~~l~~~~~~~~--~~~~~~~~~~  358 (371)
                      +++|+++||++|||||+|++.+++|+  |+.+.+++|.
T Consensus       325 ~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~  362 (425)
T KOG1342|consen  325 NELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIR  362 (425)
T ss_pred             ccCCCccchhhhCCCcccccCccchhcccCHHHHHHHH
Confidence            99999999999999999999999988  4877776664

>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 1e-132
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-132
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 2e-85
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 2e-85
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 2e-85
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 2e-85
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 4e-85
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 5e-85
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 5e-85
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 6e-85
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 1e-84
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 2e-84
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 2e-84
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 2e-84
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 7e-41
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 5e-40
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 7e-21
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 9e-21
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 1e-20
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 1e-20
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 1e-18
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 4e-18
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 2e-16
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 2e-16
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 4e-11
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 2e-10
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/340 (63%), Positives = 279/340 (82%), Gaps = 1/340 (0%)
Query: 3   SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQ 62
           +K K+ Y+YDGD+G+ Y+G  HPMKPHR+ MTH+L+L+Y L++KMEIYRPHKA   E+ +
Sbjct: 1   AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTK 60
Query: 63  FHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNN 122
           +HS +Y++FL  I PD    + +++ ++N+GEDCPVF+ LFEFCQ+  GG++  A +LN 
Sbjct: 61  YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNR 120
Query: 123 QLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEA 182
           Q  D+A+NWAGGLHHAKK EASGFCY+ND+VL ILELLKYH RVLYIDID+HHGDGVEEA
Sbjct: 121 QQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEA 180
Query: 183 FYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII 242
           FY TDRVMTVSFHK+G+ +FPGTGD+++IG  +GK+YA+N P++DGIDD S+ ++FK II
Sbjct: 181 FYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239
Query: 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302
           SKV+E Y P A+VLQCGADSL+GDRLGCFNL++ GHA+CV  VK FNLPLL+ GGGGYT 
Sbjct: 240 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTI 299
Query: 303 ENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRI 342
            NVARCWT ET + LD E+PNE+P N+Y +YF P+  L I
Sbjct: 300 RNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHI 339
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 0.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 0.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 0.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 0.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-47
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 8e-46
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 3e-43
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 4e-41
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
 Score =  550 bits (1419), Expect = 0.0
 Identities = 217/345 (62%), Positives = 281/345 (81%), Gaps = 1/345 (0%)

Query: 3   SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQ 62
           +K K+ Y+YDGD+G+ Y+G  HPMKPHR+ MTH+L+L+Y L++KMEIYRPHKA   E+ +
Sbjct: 1   AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTK 60

Query: 63  FHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNN 122
           +HS +Y++FL  I PD    + +++ ++N+GEDCPVF+ LFEFCQ+  GG++  A +LN 
Sbjct: 61  YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNR 120

Query: 123 QLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEA 182
           Q  D+A+NWAGGLHHAKK EASGFCY+ND+VL ILELLKYH RVLYIDID+HHGDGVEEA
Sbjct: 121 QQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEA 180

Query: 183 FYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII 242
           FY TDRVMTVSFHK+G+ +FPGTGD+++IG  +GK+YA+N P++DGIDD S+ ++FK II
Sbjct: 181 FYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239

Query: 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302
           SKV+E Y P A+VLQCGADSL+GDRLGCFNL++ GHA+CV  VK FNLPLL+ GGGGYT 
Sbjct: 240 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTI 299

Query: 303 ENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHI 347
            NVARCWT ET + LD E+PNE+P N+Y +YF P+  L I   ++
Sbjct: 300 RNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNM 344
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.1e-109  Score=816.80  Aligned_cols=354  Identities=62%  Similarity=1.184  Sum_probs=340.0

Q ss_pred             CCeEEEEEcccccCCCCCCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhhh
Q 017454            4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF   83 (371)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~~   83 (371)
                      |+||+|+||++++.|.++++|||+|+|+++++++|+++|+++++++++|++|+.++|++|||++||++|++.+++...++
T Consensus         2 ~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~   81 (367)
T 3max_A            2 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEY   81 (367)
T ss_dssp             CCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGGC
T ss_pred             CCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccchh
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999887655444


Q ss_pred             HHhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHcccccccccccCccCCccccCCCCccccchHHHHHHHHHHhC
Q 017454           84 RQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH  163 (371)
Q Consensus        84 ~~~~~~~~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~~~~  163 (371)
                      .+++.+++++.|||+++++|++|+++|||++.||+++++|+.++|+|||||+|||++++++|||+|||+||||++|++..
T Consensus        82 ~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~~  161 (367)
T 3max_A           82 SKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH  161 (367)
T ss_dssp             HHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTTC
T ss_pred             hhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHcC
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             CcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHHHHHHHH
Q 017454          164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS  243 (371)
Q Consensus       164 ~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~~~~l~  243 (371)
                      +||+|||||||||||||+||++||+|||+|+|+++. |||+||..+++|.|+|+|+++|||||+|++|++|+.+|+++|.
T Consensus       162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~-~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~  240 (367)
T 3max_A          162 QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIIS  240 (367)
T ss_dssp             SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSS-CTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCC-CCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999964 9999999999999999999999999999999999999999999


Q ss_pred             HhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhCCCCCC
Q 017454          244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPN  323 (371)
Q Consensus       244 ~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg~~~~~  323 (371)
                      |++++|+||+||||||||+|.+||||+|+||.+||.+|++.++++++|+++++||||++++++|||+++|++++|+++|+
T Consensus       241 ~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~~  320 (367)
T 3max_A          241 KVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN  320 (367)
T ss_dssp             HHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhccCCCcccccCCCCcc--ccHhhhhhhh
Q 017454          324 EIPENEYIKYFAPECSLRIPNGHIV--CSFKEIDKFI  358 (371)
Q Consensus       324 ~~p~~~~~~~~~p~~~l~~~~~~~~--~~~~~~~~~~  358 (371)
                      ++|.++||++|||||+|+++++||+  |++|.|++|+
T Consensus       321 ~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~  357 (367)
T 3max_A          321 ELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIK  357 (367)
T ss_dssp             BCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHH
T ss_pred             CCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHH
Confidence            9999999999999999999999998  4777776654
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 371
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 1e-92
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 1e-76
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-54
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  280 bits (716), Expect = 1e-92
 Identities = 145/339 (42%), Positives = 218/339 (64%), Gaps = 3/339 (0%)

Query: 9   YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADY 68
           Y Y  +  S     +    P R  M H L+ +Y LHK+M I +P  A   E+A FH+  Y
Sbjct: 5   YIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 69  VEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIA 128
           ++ L +++ +       +  +Y LG DCP  E +F++     G TI AA+ L + +C +A
Sbjct: 63  LQHLQKVSQEGDDDHP-DSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121

Query: 129 INWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDR 188
           INW+GG HHAKK EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181

Query: 189 VMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVET 248
           VMTVS HKF   FFPGTGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V + 
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241

Query: 249 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARC 308
           + P A+VLQ GAD++AGD +  FN++  G  +C++++ ++ L  L+ GGGGY   N ARC
Sbjct: 242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARC 301

Query: 309 WTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHI 347
           WT  TG++L   L +EIP++E+   + P+  L I     
Sbjct: 302 WTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCR 340
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-102  Score=769.49  Aligned_cols=348  Identities=42%  Similarity=0.829  Sum_probs=328.5

Q ss_pred             EEEEcccccCCCCCCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhhhHHhh
Q 017454            8 SYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQEL   87 (371)
Q Consensus         8 ~~~~~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~   87 (371)
                      .|||||++.++  ++.|||+|.|+++++++|+++||++++++++|++|+.++|++|||++||++|++.+++..... .+.
T Consensus         4 vyiy~~~~~~~--~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~-~~~   80 (364)
T d1t64a_           4 VYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDH-PDS   80 (364)
T ss_dssp             EEECCHHHHHH--HTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCC-TTT
T ss_pred             eEEeCHHHhcc--CCCCCCCcHHHHHHHHHHHHcCCccCCEEeCCCCCCHHHHHHhCCHHHHHHHHHhhhcccccc-chh
Confidence            57899999876  678999999999999999999999999999999999999999999999999998654332211 123


Q ss_pred             hhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHcccccccccccCccCCccccCCCCccccchHHHHHHHHHHhCCcEE
Q 017454           88 TKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVL  167 (371)
Q Consensus        88 ~~~~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~~~~~RVl  167 (371)
                      .+++++.|||+++++++++++++|+++.|++++++|+.++|++|+||||||++++|+|||+|||+||||+++++..+||+
T Consensus        81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~  160 (364)
T d1t64a_          81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL  160 (364)
T ss_dssp             TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred             eeecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccccccccHHHHHHHHHHhhhceEE
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHHHHHHHHHhHh
Q 017454          168 YIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVE  247 (371)
Q Consensus       168 ivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~~~~l~~~~~  247 (371)
                      |||||||||||||+||++||+|+|+|+|+++..|||+||..+++|.|+|+++++|||||+|++|++|+.+|+++|.|+++
T Consensus       161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~  240 (364)
T d1t64a_         161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ  240 (364)
T ss_dssp             EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCCceeeeeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeecccccChHHHHHHHHHhhHHHhh
Confidence            99999999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhCCCCCCCCCC
Q 017454          248 TYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPE  327 (371)
Q Consensus       248 ~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg~~~~~~~p~  327 (371)
                      +|+||+||||||||+|.+||||+|+||++||.+|+++++++++|+++++|||||+++++|||+++|++|+|+++++++|+
T Consensus       241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~  320 (364)
T d1t64a_         241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD  320 (364)
T ss_dssp             HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred             cCCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhccCCCcccccCCCCcc--ccHhhhhhhh
Q 017454          328 NEYIKYFAPECSLRIPNGHIV--CSFKEIDKFI  358 (371)
Q Consensus       328 ~~~~~~~~p~~~l~~~~~~~~--~~~~~~~~~~  358 (371)
                      |+||++|+|+|+|++++++|+  |+.+.+++|+
T Consensus       321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~  353 (364)
T d1t64a_         321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQIL  353 (364)
T ss_dssp             CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHH
T ss_pred             chhhhhcCCCcccccCcccccccCCHHHHHHHH
Confidence            999999999999999999886  5777776554
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure