Citrus Sinensis ID: 017493

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYSSRGKNGRNRSRMSKWKVHQSASPSFSNEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccccEEEEEEEcccccccEEEccccccccccccccccccccccccccEEcccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHcccHHEEEEEEEccccccEEEEcccccccHHHHcccccccccccccccEEccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHHcccccccccccEEcccEEEccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccccccccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHcccccccccEEEEEEcccccccccEEEcc
Coil and Loop (DISEMBL)
mflhgtteANLCRLSLILAKRVSRHNHLRFLSLEIMstgqngkvettpsgsnasarllsdshvdgnglsgnefyssrgkngrnrsrmskwkvhqsaspsfsnedfppldvnlvssskgghidkmktridlgpgqktdIIVStqledsplsnyvsqhddsspsaplfnkemkhahanaspykrnyfkheldakkwdsshrlhnvepfdicLSRRRnfrmekenecrqtvdwtregilrPGMVLLKHYLTIREQILIVRICQelgkgpggfyqpgyndgaKLRLRMMClgldwdpqtrkygkkrqvdgcepsvipsEFKQLVQRSMSEAHALIKMdskvsnvedilpalspdicivnfyntsgrlglhqvcs
Flexible Loop (DISEMBL)
mflhgtteanLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSdshvdgnglsgnefyssrgkngrnRSRMSKWKVHQSAspsfsnedfppLDVNLVssskgghidkmktridlgpgqkTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAkkwdsshrlhnvepfdiclsrrrnfrmekenecrqtvdwtregilrPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKkrqvdgcepsviPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS
Low Complexity Region (SEG)
MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYssrgkngrnrsrmsKWKVHQSASPSFSNEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS
Disordered region (IsUnstruct)
******TEANLCRLSLILAKRVSRHNHLRFLSLEIM**************************************************************************************************************************************************NYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDP*******************************************VSNVEDILPALSPDICIVNFYNTSGRLGLH****
Disordered Region (DISOPRED)
****G*TEANLCRLSLILAKRVSRHNHLRFLSLEIMST*********************DSHVDGNGL**********************************************************************************************************************************************************************ILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQV**
Disordered Region (DISEMBL)
MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYSS*************************NEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDS**************SAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRK*********CEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS
Disordered Region (DISPRO)
*FLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVET*******************NGLS****************R*S************************************KTRIDLGPGQKTD*IVST*********************************************************LHNVEPFDICLSRRRNFRMEKE**C**TVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYSSRGKNGRNRSRMSKWKVHQSASPSFSNEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
356495097	447	PREDICTED: uncharacterized protein LOC10	0.575	0.476	0.5	2e-54
449464420	444	PREDICTED: uncharacterized protein LOC10	0.427	0.355	0.642	4e-54
449510843	444	PREDICTED: uncharacterized LOC101210053	0.427	0.355	0.642	5e-54
359481179	482	PREDICTED: uncharacterized protein LOC10	0.551	0.423	0.495	6e-54
225439617	456	PREDICTED: uncharacterized protein LOC10	0.545	0.442	0.490	2e-52
297735575	554	unnamed protein product [Vitis vinifera]	0.545	0.364	0.490	4e-52
357470119	437	Alpha-ketoglutarate-dependent dioxygenas	0.451	0.382	0.547	3e-48
255576587	465	conserved hypothetical protein [Ricinus	0.524	0.417	0.463	3e-46
224070999	322	predicted protein [Populus trichocarpa]	0.445	0.512	0.491	1e-43
224140571	236	predicted protein [Populus trichocarpa]	0.345	0.542	0.592	3e-43

>gi|356495097|ref|XP_003516417.1| PREDICTED: uncharacterized protein LOC100818496 [Glycine max]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/222 (50%), Positives = 148/222 (66%), Gaps = 9/222 (4%)

Query: 154 SQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRR 213
           S  D+  P    F K+ K A  N      N   ++    K D+S      +PFDIC S R
Sbjct: 136 SNFDNELPQGSNFWKK-KPASVNRPYNSPNNSNYDAVGNKLDASVGSPMSKPFDICFSGR 194

Query: 214 RNFRM-------EKENECRQTVDW-TREGILRPGMVLLKHYLTIREQILIVRICQELGKG 265
           RN  +       + E  C +  +   + GILRPGMVLLK+Y+T+ EQ+ IV++C+ELG G
Sbjct: 195 RNPALIGATLPGDNEKSCIEMQEEKIKGGILRPGMVLLKNYITLDEQVEIVKVCRELGLG 254

Query: 266 PGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMS 325
           PGGFYQPGY +GAKLRL+MMCLG+DW+PQ+ KYGKKR +DG +P  IP  F QLV R++ 
Sbjct: 255 PGGFYQPGYANGAKLRLKMMCLGMDWNPQSYKYGKKRVIDGSKPPSIPYHFSQLVIRAIQ 314

Query: 326 EAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQ 367
           EAH++IK +++V  VED LP+++PDICIVNFY  +G+LGLHQ
Sbjct: 315 EAHSIIKKENRVFKVEDELPSMTPDICIVNFYTNNGKLGLHQ 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464420|ref|XP_004149927.1| PREDICTED: uncharacterized protein LOC101210053 [Cucumis sativus]

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 125/168 (74%), Gaps = 10/168 (5%)

Query: 205 PFDICLS-----RRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRIC 259
           PFDICL      + RN  + KE     TV   R  +LRPGMVLLKHY+T REQI IV+ C
Sbjct: 191 PFDICLPGGGNVKHRNIYVVKEG---GTVKDYR--LLRPGMVLLKHYITPREQINIVKTC 245

Query: 260 QELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQL 319
           Q LG GPGGFYQPGY DGAKLRLRMMCLGLDWDPQTR+Y  KR VDG +P  IP +F  L
Sbjct: 246 QNLGIGPGGFYQPGYKDGAKLRLRMMCLGLDWDPQTRRYENKRVVDGNKPPDIPPQFTFL 305

Query: 320 VQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQ 367
           V+R++ +AHA IK +  +SNVE+ILP++SPDICI NFY T GRLGLHQ
Sbjct: 306 VKRALKDAHAFIKNNCNISNVEEILPSMSPDICIANFYTTRGRLGLHQ 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510843|ref|XP_004163780.1| PREDICTED: uncharacterized LOC101210053 [Cucumis sativus]

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 125/168 (74%), Gaps = 10/168 (5%)

Query: 205 PFDICLS-----RRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRIC 259
           PFDICL      + RN  + KE     TV   R  +LRPGMVLLKHY+T REQI IV+ C
Sbjct: 191 PFDICLPGGGNVKHRNIYVVKEG---GTVKDYR--LLRPGMVLLKHYITPREQINIVKTC 245

Query: 260 QELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQL 319
           Q LG GPGGFYQPGY DGAKLRLRMMCLGLDWDPQTR+Y  KR VDG +P  IP +F  L
Sbjct: 246 QNLGIGPGGFYQPGYKDGAKLRLRMMCLGLDWDPQTRRYENKRVVDGNKPPDIPPQFTFL 305

Query: 320 VQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQ 367
           V+R++ +AHA IK +  +SNVE+ILP++SPDICI NFY T GRLGLHQ
Sbjct: 306 VKRALKDAHAFIKNNCNISNVEEILPSMSPDICIANFYTTRGRLGLHQ 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481179|ref|XP_003632586.1| PREDICTED: uncharacterized protein LOC100246527 isoform 2 [Vitis vinifera]

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/208 (49%), Positives = 142/208 (68%), Gaps = 4/208 (1%)

Query: 166 FNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLS----RRRNFRMEKE 221
           F K+    H+      + Y +H++     +    L   EPFDIC S      +   + ++
Sbjct: 160 FGKKSTPPHSRKPQRGQPYHRHDVGTGNSECPRGLQKFEPFDICKSGVMHPVKKCLIPEQ 219

Query: 222 NECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLR 281
           NE + +++ T + +LRPGMVLLK Y+++ EQI +V+ C++LG GPGGFY+PGY DGAKLR
Sbjct: 220 NEIKHSMEGTTQEVLRPGMVLLKGYISLTEQIKMVKKCRDLGVGPGGFYRPGYQDGAKLR 279

Query: 282 LRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVE 341
           L+MMCLG++WDPQTRKY K   +DG E   IP EF  LV+R++ ++ +LIK +S  +NVE
Sbjct: 280 LQMMCLGMNWDPQTRKYEKWHPLDGSETPDIPHEFSVLVERAIQDSQSLIKKNSGENNVE 339

Query: 342 DILPALSPDICIVNFYNTSGRLGLHQVC 369
           D LP +SP+ICIVNFY TSGRLGLHQVC
Sbjct: 340 DTLPRMSPNICIVNFYTTSGRLGLHQVC 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439617|ref|XP_002267882.1| PREDICTED: uncharacterized protein LOC100246527 isoform 1 [Vitis vinifera]

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 166 FNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLS----RRRNFRMEKE 221
           F K+    H+      + Y +H++     +    L   EPFDIC S      +   + ++
Sbjct: 160 FGKKSTPPHSRKPQRGQPYHRHDVGTGNSECPRGLQKFEPFDICKSGVMHPVKKCLIPEQ 219

Query: 222 NECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLR 281
           NE + +++ T + +LRPGMVLLK Y+++ EQI +V+ C++LG GPGGFY+PGY DGAKLR
Sbjct: 220 NEIKHSMEGTTQEVLRPGMVLLKGYISLTEQIKMVKKCRDLGVGPGGFYRPGYQDGAKLR 279

Query: 282 LRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVE 341
           L+MMCLG++WDPQTRKY K   +DG E   IP EF  LV+R++ ++ +LIK +S  +NVE
Sbjct: 280 LQMMCLGMNWDPQTRKYEKWHPLDGSETPDIPHEFSVLVERAIQDSQSLIKKNSGENNVE 339

Query: 342 DILPALSPDICIVNFYNTSGRLGLHQ 367
           D LP +SP+ICIVNFY TSGRLGLHQ
Sbjct: 340 DTLPRMSPNICIVNFYTTSGRLGLHQ 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735575|emb|CBI18069.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 166 FNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLS----RRRNFRMEKE 221
           F K+    H+      + Y +H++     +    L   EPFDIC S      +   + ++
Sbjct: 258 FGKKSTPPHSRKPQRGQPYHRHDVGTGNSECPRGLQKFEPFDICKSGVMHPVKKCLIPEQ 317

Query: 222 NECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLR 281
           NE + +++ T + +LRPGMVLLK Y+++ EQI +V+ C++LG GPGGFY+PGY DGAKLR
Sbjct: 318 NEIKHSMEGTTQEVLRPGMVLLKGYISLTEQIKMVKKCRDLGVGPGGFYRPGYQDGAKLR 377

Query: 282 LRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVE 341
           L+MMCLG++WDPQTRKY K   +DG E   IP EF  LV+R++ ++ +LIK +S  +NVE
Sbjct: 378 LQMMCLGMNWDPQTRKYEKWHPLDGSETPDIPHEFSVLVERAIQDSQSLIKKNSGENNVE 437

Query: 342 DILPALSPDICIVNFYNTSGRLGLHQ 367
           D LP +SP+ICIVNFY TSGRLGLHQ
Sbjct: 438 DTLPRMSPNICIVNFYTTSGRLGLHQ 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470119|ref|XP_003605344.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|355506399|gb|AES87541.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula]

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 129/188 (68%), Gaps = 21/188 (11%)

Query: 194 WDSSHRLHNVEPFDIC--------------LSRRRNFRMEKENECRQTVDWTREGILRPG 239
           +++SHR  N   FDIC              L + ++  +E E +   T   T + ILRPG
Sbjct: 166 YNNSHRKIN---FDICFRGIRNSGLTGATPLEKNKDSCIEFEMQDGGTNKETNDVILRPG 222

Query: 240 MVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYG 299
           MVLLKH+LT  EQ+ IV+ C++LG GPGGFYQPGY DGAK RL+MMCLG+DWDPQTRKYG
Sbjct: 223 MVLLKHHLTHEEQVEIVKKCRDLGLGPGGFYQPGYGDGAKFRLKMMCLGMDWDPQTRKYG 282

Query: 300 KKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNT 359
            KR++DG +P  IP  F +LV RS+ EA  LI  +S    VE ILP+++PDICIVNFY T
Sbjct: 283 YKREIDGSKPPSIPHYFSKLVIRSIQEARNLINQES----VEHILPSITPDICIVNFYLT 338

Query: 360 SGRLGLHQ 367
           +GRLGLHQ
Sbjct: 339 NGRLGLHQ 346

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576587|ref|XP_002529184.1| conserved hypothetical protein [Ricinus communis] gi|223531362|gb|EEF33198.1| conserved hypothetical protein [Ricinus communis]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 132/207 (63%), Gaps = 13/207 (6%)

Query: 172 HAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRM----------EKE 221
           H+ A     + ++ K         SS     +EPFDICL + R F +           K 
Sbjct: 170 HSGAKDQSLQEHFSKRTEPTGDSGSSENQPVIEPFDICLPKNRPFVVLKSTLFDINRGKR 229

Query: 222 NECRQTVDWTREG-ILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKL 280
           NE +   +  ++G IL PGMVLLK +L+I +Q+ IV  C+ LG GPGGFYQPGY  GAKL
Sbjct: 230 NEIKHASE--KQGKILEPGMVLLKGFLSIDDQVRIVNKCRNLGLGPGGFYQPGYRGGAKL 287

Query: 281 RLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNV 340
           RL+MMCLG +WDP T  Y + R +DG    +IP EF +LV+++M ++ AL + ++K ++ 
Sbjct: 288 RLKMMCLGRNWDPDTSSYEELRSIDGAAAPIIPDEFCELVKKAMKDSIALSQRNNKATSA 347

Query: 341 EDILPALSPDICIVNFYNTSGRLGLHQ 367
           EDILP ++PDIC+VNFY+TSGRLGLHQ
Sbjct: 348 EDILPGMTPDICVVNFYSTSGRLGLHQ 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070999|ref|XP_002303323.1| predicted protein [Populus trichocarpa] gi|222840755|gb|EEE78302.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 10/175 (5%)

Query: 203 VEPFDICLSRRRNF----------RMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQ 252
           VEPFDICL +                EK N+ R+  D     ILR GMVLLK+YL++ +Q
Sbjct: 57  VEPFDICLPKTGTTLKLKPSLLVKNREKRNDVRRAADGVNGRILRSGMVLLKNYLSLHDQ 116

Query: 253 ILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVI 312
           I I+++C+++G GPGGFYQP Y DG ++ L+MM LG  WDP   KY + R VDG +  + 
Sbjct: 117 IKIIKLCRDIGLGPGGFYQPVYRDGGRMHLKMMSLGRSWDPDRGKYLEHRPVDGAKAPIF 176

Query: 313 PSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQ 367
           PS+F  LV+R++ ++ ALI+++ K +  EDILP LSP+IC+VNFY+ SGRLGLHQ
Sbjct: 177 PSDFHPLVERAIKDSRALIEINCKSTAAEDILPPLSPNICVVNFYSESGRLGLHQ 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140571|ref|XP_002323656.1| predicted protein [Populus trichocarpa] gi|222868286|gb|EEF05417.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 105/135 (77%), Gaps = 7/135 (5%)

Query: 233 EGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWD 292
           +G+LRPGMVLLK Y+++ +QI +V+ C+E+G GPGGFY+PGY +GAKLRL+MMCLGL+WD
Sbjct: 18  QGVLRPGMVLLKRYISLGDQIEMVKTCREIGLGPGGFYRPGYKNGAKLRLQMMCLGLNWD 77

Query: 293 PQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDIC 352
           P+TRKY  +   DGC+P  IP EF QLV+ ++ +AH L+  D        +LP +SPDIC
Sbjct: 78  PETRKYEDRSPADGCKPPCIPREFNQLVETAIQDAHGLLGKDY-------MLPTMSPDIC 130

Query: 353 IVNFYNTSGRLGLHQ 367
           IVNFY T+GRLGLHQ
Sbjct: 131 IVNFYTTNGRLGLHQ 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2087452	455	AT3G14160 [Arabidopsis thalian	0.359	0.292	0.548	2.6e-38

TAIR|locus:2087452 AT3G14160 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 73/133 (54%), Positives = 100/133 (75%)

Query:   235 ILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQ 294
             ++RPGMVLLK+YL+I +Q++IV  C+ LG G GGFYQPGY D AKL L+MMCLG +WDP+
Sbjct:   232 VIRPGMVLLKNYLSINDQVMIVNKCRRLGLGEGGFYQPGYRDEAKLHLKMMCLGKNWDPE 291

Query:   295 TRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIV 354
             T +YG+ R  DG     IP+EF Q V++++ E+ +L   +SK +   D +P + PDICIV
Sbjct:   292 TSRYGETRPFDGSTAPRIPAEFNQFVEKAVKESQSLAASNSKQTKGGDEIPFMLPDICIV 351

Query:   355 NFYNTSGRLGLHQ 367
             NFY+++GRLGLHQ
Sbjct:   352 NFYSSTGRLGLHQ 364


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      370       356   0.00080  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  258 KB (2137 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.81u 0.12s 29.93t   Elapsed:  00:00:01
  Total cpu time:  29.81u 0.12s 29.93t   Elapsed:  00:00:01
  Start:  Sat May 11 15:13:08 2013   End:  Sat May 11 15:13:09 2013

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037452001 SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (324 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
pfam13532	190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	6e-16

>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 239 GMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMM-CLGLDWDPQTRK 297
           G+VLL  +L+  EQ  ++R           + QP    G  + +RM  C  L W      
Sbjct: 1   GLVLLPGFLSAEEQAALLRELLAEA----PWRQPMTPGGKPMSVRMTNCGPLGWVTDGPG 56

Query: 298 YG-KKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNF 356
           Y      V G      P+   QL +R  + A                 P   P+ C+VNF
Sbjct: 57  YRYSGTPVTGEPWPPFPAVLLQLAERLAAAAG---------------PPGFEPNACLVNF 101

Query: 357 YNTSGRLGLHQ 367
           Y    R+GLHQ
Sbjct: 102 YRPGARMGLHQ 112

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
PRK15401	213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	100.0
TIGR00568	169	alkb DNA alkylation damage repair protein AlkB. Pr	99.88
COG3145	194	AlkB Alkylated DNA repair protein [DNA replication	99.84
KOG2731	378	consensus DNA alkylation damage repair protein [RN	99.78
PF13532	194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.7
KOG3200	224	consensus Uncharacterized conserved protein [Funct	97.62
KOG4176	323	consensus Uncharacterized conserved protein [Funct	97.46
KOG2731	378	consensus DNA alkylation damage repair protein [RN	94.96
smart00702	178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	92.2
PRK05467	226	Fe(II)-dependent oxygenase superfamily protein; Pr	81.22

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional

Probab=100.00  E-value=8.9e-33  Score=254.71  Aligned_cols=120  Identities=26%  Similarity=0.452  Sum_probs=111.9

Q ss_pred             ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCC
Q 017493          234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPS  310 (370)
Q Consensus       234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwP  310 (370)
                      +++.||+++||||+ .++|++|+++|++++.+ +|||+|.+|+|++|+++|+||| ++|.+|+.+|  ...+|.++++||
T Consensus        14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~-~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp   91 (213)
T PRK15401         14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQ-APFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWP   91 (213)
T ss_pred             eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhc-CCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCC
Confidence            67999999999996 78999999999999999 9999999999999999999999 9999998888  555688999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493          311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS  370 (370)
Q Consensus       311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD  370 (370)
                      +||++|.+|+++++..+               +++.+.||+||||||.+|++||||||+|
T Consensus        92 ~~P~~l~~L~~~~~~~~---------------~~~~~~p~a~LvN~Y~~G~~mg~H~D~~  136 (213)
T PRK15401         92 AMPASFLALAQRAAAAA---------------GFPGFQPDACLINRYAPGAKLSLHQDKD  136 (213)
T ss_pred             CchHHHHHHHHHHHHHc---------------CCCCCCCCEEEEEeccCcCccccccCCC
Confidence            99999999999998877               5678999999999999999999999975

>TIGR00568 alkb DNA alkylation damage repair protein AlkB

Probab=99.88  E-value=1.6e-22  Score=180.28  Aligned_cols=112  Identities=27%  Similarity=0.453  Sum_probs=100.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCCCCCHHHHHH
Q 017493          243 LKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPSVIPSEFKQL  319 (370)
Q Consensus       243 LPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwPpIPe~L~~L  319 (370)
                      |++|+..++|.+|+++|++++.+ .||+++.++.|++|++.+++|| +.|.++...|  ..+.+..+.+||+||++|.+|
T Consensus         1 l~~~~~~~~~~~l~~~~~~~~~~-~~w~~~~~~~gk~~~~pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L   79 (169)
T TIGR00568         1 LKRYFAFNAQEQLIRDINDVASQ-DPFRQYVTPGGYTMSVAMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDL   79 (169)
T ss_pred             CCCccChHHHHHHHHHHHHHhhc-CCCcCeEecCCeEeeehhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHH
Confidence            67899999999999999999988 8999999999999999999999 9999986666  555444789999999999999


Q ss_pred             HHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493          320 VQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS  370 (370)
Q Consensus       320 a~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD  370 (370)
                      +++++..+               +++++.||+||||||.+|++||||+|++
T Consensus        80 ~~~v~~~~---------------g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~  115 (169)
T TIGR00568        80 CERVATAA---------------GFPDFQPDACLVNRYAPGATLSLHQDRD  115 (169)
T ss_pred             HHHHHHHh---------------CCCCCCCCEEEEEeecCCCccccccccc
Confidence            99988776               4667899999999999999999999963

Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]

Probab=99.84  E-value=7.6e-21  Score=174.17  Aligned_cols=113  Identities=24%  Similarity=0.297  Sum_probs=97.8

Q ss_pred             ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCC-CcccccCCCceeEEEEeecCCceecCCCCc--ccccCCCCCCCC
Q 017493          234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGG-FYQPGYNDGAKLRLRMMCLGLDWDPQTRKY--GKKRQVDGCEPS  310 (370)
Q Consensus       234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaP-Fr~P~tPgG~~MSVRMmcLG~gWdsDt~gY--~~~~P~dGapwP  310 (370)
                      ..+.||++++++|+ ..+|.++++++..+..+ .| |....++.|++|+|.|   ..+|.+|.++|  +..+|.++.+||
T Consensus        11 ~~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~-~P~~~~~~~~~g~~~sV~r---~~~W~~d~~gy~y~~~~p~~~~p~p   85 (194)
T COG3145          11 RQLAPGAVILPGFL-LLTQGALVAALLFLLSQ-APWFRPRRTPYGKPMSVPR---LLGWVTDRRGYRYSLRSPLTGKPWP   85 (194)
T ss_pred             ccCCCCeEEEeccc-ccchHHHHHHHHHhccc-CcccceeecCCCcEeeeee---ccceecccccccccccccCCCCCCC
Confidence            46889999999999 67999999999999888 78 5555666799999999   55566665667  889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493          311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS  370 (370)
Q Consensus       311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD  370 (370)
                      ++|+.+..++.    ++               +.+.+.||+||||+|.+|++||||||+|
T Consensus        86 ~l~~~~~~~~~----~~---------------g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~  126 (194)
T COG3145          86 PLLALFHDLFG----AA---------------GYPFEGPEAVLVNRYRPGASIGWHQDKD  126 (194)
T ss_pred             ccHHHHHHHHH----Hh---------------cCCCCChhheeEEeccCCCccccccccc
Confidence            99999998886    23               6788999999999999999999999986

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]

Probab=99.78  E-value=4.2e-20  Score=181.98  Aligned_cols=154  Identities=38%  Similarity=0.604  Sum_probs=138.9

Q ss_pred             CCCCcccc--ccc----cccccccccchhh-ccccccCcceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCccccc
Q 017493          202 NVEPFDIC--LSR----RRNFRMEKENECR-QTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGY  274 (370)
Q Consensus       202 ~~~pfDIc--~~~----Lkpslle~nre~r-~~~~~s~~~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~t  274 (370)
                      +-.+||||  +++    ++|+++...+|+. ++.+... ..++||  +|++||++++|..|+..||+++..+ |||+|.+
T Consensus       175 dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~-~~~~~G--li~nYlsi~~tl~ih~d~reld~~~-pf~s~s~  250 (378)
T KOG2731|consen  175 DWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAKGFSH-IVIRPG--LIKNYLSIDDTLGIHLDCRELDLSK-PFYSPSL  250 (378)
T ss_pred             CCccccccccccccCCCCChHHhhhhhhhhhhhcCccc-eeccCc--ceeeecccCcEEEEEeehhhcccCC-ccccccc
Confidence            33457766  776    7999999988777 4455555 889999  9999999999999999999999995 5999999


Q ss_pred             CCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEE
Q 017493          275 NDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIV  354 (370)
Q Consensus       275 PgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLV  354 (370)
                      ..++.+.+.|||+|..|++.+.+|++..+.+|         |.+|+..|+..+..+.+.+++.+.++.+.|  .||+|+|
T Consensus       251 g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~G---------fsrlv~haIp~s~sl~~~e~~~~~~~~e~p--lp~i~~~  319 (378)
T KOG2731|consen  251 GQGAILLLGMMCLGENPDPMTLRSGDVVIMDG---------FSRLVEHAIPESRSLPARESNGTKAGDEAP--LPDICIV  319 (378)
T ss_pred             cccceeeecccccCCCCCccccccCceEeecc---------hHHHHhhccchhceecccccCCCcccccCC--Ccccccc
Confidence            88999999999999999999999999999999         999999999999999999999999999999  9999999


Q ss_pred             eeecCCCCccccccCC
Q 017493          355 NFYNTSGRLGLHQVCS  370 (370)
Q Consensus       355 NfY~PGArMGLHQDrD  370 (370)
                      |||.+.++||+|||++
T Consensus       320 ~f~~~~g~~~~~Q~~~  335 (378)
T KOG2731|consen  320 NFYSETGSLGLHQDKA  335 (378)
T ss_pred             cccCCCcccccchhHH
Confidence            9999999999999975

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A

Probab=99.70  E-value=2.3e-17  Score=142.74  Aligned_cols=114  Identities=25%  Similarity=0.434  Sum_probs=85.0

Q ss_pred             ceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCCCCCHH
Q 017493          239 GMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPSVIPSE  315 (370)
Q Consensus       239 GmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwPpIPe~  315 (370)
                      |+.++|+||+.++|.+|++.+.+..    +|.++.++.+..++..++.++ ++|.+....|  ...++.+..+||++|++
T Consensus         1 G~~~~~~fls~~e~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~   76 (194)
T PF13532_consen    1 GLYYIPNFLSEEEAAELLNELRESA----PFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEW   76 (194)
T ss_dssp             -EEEETTSS-HHHHHHHHHHHHHHS------B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHH
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhC----CCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHH
Confidence            8999999999999999999999543    368888888889999988787 8999876666  33346788999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493          316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS  370 (370)
Q Consensus       316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD  370 (370)
                      |.++++++.+.+.              ..+.+.||+||||+|.+|++||+|+|..
T Consensus        77 l~~~~~~~~~~~~--------------~~~~~~~n~~liN~Y~~g~~i~~H~D~~  117 (194)
T PF13532_consen   77 LSRLLERLVEATG--------------IPPGWRPNQCLINYYRDGSGIGPHSDDE  117 (194)
T ss_dssp             HHHHHHHHHHHHT---------------SHSS--SEEEEEEESSTT-EEEE---T
T ss_pred             HHHHHHHHHHHhc--------------cccCCCCCEEEEEecCCCCCcCCCCCcc
Confidence            9999999988772              2346789999999999999999999963

...

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=9.6e-05  Score=69.22  Aligned_cols=98  Identities=17%  Similarity=0.273  Sum_probs=69.6

Q ss_pred             ecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHH
Q 017493          236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSE  315 (370)
Q Consensus       236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~  315 (370)
                      +.|-|.++|+|++.+||..+++.|....   .    |++.  .....|..+.|          +-.++ +|.-+..||+|
T Consensus        10 ~~pt~~YIPnfIt~EEe~~~lshIe~ap---~----pkW~--~L~NRRLqNyG----------Gvvh~-~glipeelP~w   69 (224)
T KOG3200|consen   10 SAPTMIYIPNFITEEEENLYLSHIENAP---Q----PKWR--VLANRRLQNYG----------GVVHK-TGLIPEELPPW   69 (224)
T ss_pred             ccceEEEcCCccChHHHHHHHHHHhcCC---C----chhH--HHHhhhhhhcC----------Ccccc-CCcCccccCHH
Confidence            5688999999999999998888775422   2    2221  11233444444          11222 57778899999


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493          316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC  369 (370)
Q Consensus       316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr  369 (370)
                      |..++.++-...               -|+. .....|||.|-||-++.-|+|-
T Consensus        70 Lq~~v~kinnlg---------------lF~s-~~NHVLVNeY~pgqGImPHtDG  107 (224)
T KOG3200|consen   70 LQYYVDKINNLG---------------LFKS-PANHVLVNEYLPGQGIMPHTDG  107 (224)
T ss_pred             HHHHHHHhhccc---------------ccCC-CcceeEeecccCCCCcCcCCCC
Confidence            999998885322               3554 7899999999999999999994

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.00029  Score=69.90  Aligned_cols=104  Identities=24%  Similarity=0.434  Sum_probs=69.7

Q ss_pred             ceecCc-eEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC--CceecCCCCcccccCCCCCCCC
Q 017493          234 GILRPG-MVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG--LDWDPQTRKYGKKRQVDGCEPS  310 (370)
Q Consensus       234 ~~L~PG-mVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG--~gWdsDt~gY~~~~P~dGapwP  310 (370)
                      ..+.|| +.++++|++..+++-++..+.+=.     |.. ... |+  ++++..||  +.+.++.-     +.  -.+.-
T Consensus       123 ~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~-----~~~-~~~-gk--~R~~iq~G~~f~y~~~~~-----d~--~~~~~  186 (323)
T KOG4176|consen  123 EVFIPGELSLIVDFVTELEEKGLIGALVDET-----FTY-QES-GK--HREVIQLGYPFDYRTNNV-----DE--SKPVD  186 (323)
T ss_pred             cccChhhceehhhhhhhhHHhhhhccccccc-----cee-ecc-cc--ceeeeecCceeccCCCcc-----cc--cCccC
Confidence            445566 888888888655555554443222     222 221 22  45777788  44444211     11  11266


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493          311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC  369 (370)
Q Consensus       311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr  369 (370)
                      |||..+..++++...+.               -+|. .||+|+||+|.||..+--|.|.
T Consensus       187 piPs~~~~ii~rlv~~~---------------~ip~-~pd~~~iN~Ye~G~~i~ph~~~  229 (323)
T KOG4176|consen  187 PIPSLFKSIIDRLVSWR---------------VIPE-RPDQCTINFYEPGDGIPPHIDH  229 (323)
T ss_pred             CCchHHHHHHHHhhhhc---------------cCCC-CCCeeEEEeeCCCCCCCCCCCh
Confidence            99999999999999998               3666 7999999999999999999864

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]

Probab=94.96  E-value=0.018  Score=58.52  Aligned_cols=72  Identities=19%  Similarity=0.262  Sum_probs=48.5

Q ss_pred             EEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcE-EEEeeecC
Q 017493          281 RLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI-CIVNFYNT  359 (370)
Q Consensus       281 SVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDa-CLVNfY~P  359 (370)
                      ++|+.++|+++++.+..|-   -+.-.+-+-||++|+.+.+.-+.+|.              ++....... .|+|||++
T Consensus       164 KlRw~T~G~~~dw~s~~~~---~~~s~k~~~~~~~ll~~~~~~~~~a~--------------~~~~~~~~~Gli~nYlsi  226 (378)
T KOG2731|consen  164 KLRWVTLGNQYDWSSKDIF---IFLSKKHYNIKPSLLGLLREKVKAAK--------------GFSHIVIRPGLIKNYLSI  226 (378)
T ss_pred             hhcccccccccCCcccccc---ccccccCCCCChHHhhhhhhhhhhhc--------------CccceeccCcceeeeccc
Confidence            5677888844444444520   01224556899999999988888774              233333333 59999999


Q ss_pred             CCCccccccC
Q 017493          360 SGRLGLHQVC  369 (370)
Q Consensus       360 GArMGLHQDr  369 (370)
                      +.++|.|-|.
T Consensus       227 ~~tl~ih~d~  236 (378)
T KOG2731|consen  227 DDTLGIHLDC  236 (378)
T ss_pred             CcEEEEEeeh
Confidence            9999999874

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues

Probab=92.20  E-value=1.4  Score=38.30  Aligned_cols=99  Identities=22%  Similarity=0.255  Sum_probs=56.7

Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHH
Q 017493          238 PGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFK  317 (370)
Q Consensus       238 PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~  317 (370)
                      |++.++++||++++-++|++.++.... ++.......-.+..-..|.. .+ .|...            ..   -++...
T Consensus         1 P~i~~~~~~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~-~~-~~l~~------------~~---~~~~~~   62 (178)
T smart00702        1 PGVVVFHDFLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQS-NG-TWLEL------------LK---GDLVIE   62 (178)
T ss_pred             CcEEEECCCCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEee-cc-eecCC------------CC---CCHHHH
Confidence            789999999999999999988877554 22221111000001111221 11 12111            00   133445


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccCC---CCCCcEEEEeeecCCCCccccccC
Q 017493          318 QLVQRSMSEAHALIKMDSKVSNVEDILP---ALSPDICIVNFYNTSGRLGLHQVC  369 (370)
Q Consensus       318 ~La~rAA~~A~al~~~~~~~~~~~~g~p---~~~PDaCLVNfY~PGArMGLHQDr  369 (370)
                      .|.+++....               +++   ....+.+-|..|.+|+..+.|.|.
T Consensus        63 ~l~~~i~~~~---------------~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~  102 (178)
T smart00702       63 RIRQRLADFL---------------GLLRGLPLSAEDAQVARYGPGGHYGPHVDN  102 (178)
T ss_pred             HHHHHHHHHH---------------CCCchhhccCcceEEEEECCCCcccCcCCC
Confidence            5555555544               122   345678889999999999999995

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional

Probab=81.22  E-value=9.7  Score=36.43  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=51.3

Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHHHH
Q 017493          240 MVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQL  319 (370)
Q Consensus       240 mVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~~L  319 (370)
                      +.++|++|++++=+.|++.+...+...+.    .            +.|++  ..  .+..     +...+.=.+.-..|
T Consensus         2 i~~I~~vLs~eec~~~~~~le~~~~~dg~----~------------taG~~--~~--~vKn-----N~ql~~d~~~a~~l   56 (226)
T PRK05467          2 LLHIPDVLSPEEVAQIRELLDAAEWVDGR----V------------TAGAQ--AA--QVKN-----NQQLPEDSPLAREL   56 (226)
T ss_pred             eeeecccCCHHHHHHHHHHHHhcCCccCC----c------------CcCcc--ch--hccc-----ccccCCCCHHHHHH
Confidence            46789999998877888777664332211    1            12211  11  2211     22333333444555


Q ss_pred             HHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493          320 VQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC  369 (370)
Q Consensus       320 a~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr  369 (370)
                      ++++......    +.-  -...++|... --.++|.|.+|...|+|+|-
T Consensus        57 ~~~i~~~L~~----~~l--~~sa~lp~~i-~~~~f~rY~~G~~y~~H~D~   99 (226)
T PRK05467         57 GNLILDALTR----NPL--FFSAALPRKI-HPPLFNRYEGGMSYGFHVDN   99 (226)
T ss_pred             HHHHHHHHhc----Cch--hhhhcccccc-ccceEEEECCCCccCccccC
Confidence            5555543310    000  0011233221 14579999999999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	2e-12

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 20/135 (14%)

Query: 236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGL---DWD 292
           L  G V+L+ +        ++R   ++      F Q     G  + + M   G       
Sbjct: 5   LAAGAVILRRFAF-NAAEQLIRDINDVA-SQSPFRQMVTPGGYTMSVAMTNCGHLGWTTH 62

Query: 293 PQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDIC 352
            Q   Y             +P  F  L QR+ + A                 P   PD C
Sbjct: 63  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG---------------YPDFQPDAC 107

Query: 353 IVNFYNTSGRLGLHQ 367
           ++N Y    +L LHQ
Sbjct: 108 LINRYAPGAKLSLHQ 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.96
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.47
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	99.38
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	99.15
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	85.95
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	81.63

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...

Probab=99.96  E-value=2.9e-30  Score=234.33  Aligned_cols=120  Identities=24%  Similarity=0.416  Sum_probs=110.0

Q ss_pred             ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCC
Q 017493          234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPS  310 (370)
Q Consensus       234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwP  310 (370)
                      +.|.||+++||||+. ++|++|+++|++++.+ +||++|.+|+|++|+++|+||| ++|.+|..+|  ...+|.++.+||
T Consensus         3 ~~~~~g~~~~~~~~~-~~~~~l~~~~~~~~~~-~p~~~~~~pgg~~~s~~~~~~g~~~W~~d~~~Y~Ys~~~~~~~~pw~   80 (211)
T 3i3q_A            3 EPLAAGAVILRRFAF-NAAEQLIRDINDVASQ-SPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP   80 (211)
T ss_dssp             CCCBTTBEEETTTTT-TTHHHHHHHHHHHHHH-SCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCC
T ss_pred             eecCCCCEEECCcCh-HHHHHHHHHHHHHHhc-CCCceeEcCCCCcCchhhcccccceeecCCCCcCcCCCccCCCCCCC
Confidence            468999999999998 6999999999999987 9999999999999999999999 9999997767  556678899999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493          311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS  370 (370)
Q Consensus       311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD  370 (370)
                      +||++|.+|++++++.+               +++.+.||+||||+|.+|++||||+|+|
T Consensus        81 ~~P~~L~~l~~~~~~~~---------------g~~~~~pn~~LvN~Y~~G~~i~~H~D~~  125 (211)
T 3i3q_A           81 AMPQSFHNLCQRAATAA---------------GYPDFQPDACLINRYAPGAKLSLHQDKD  125 (211)
T ss_dssp             CCCHHHHHHHHHHHHHT---------------TCTTCCCCEEEEEEECTTCCEEEECCCC
T ss_pred             chHHHHHHHHHHHHHhc---------------CCCCcCCCEEEEEEEcCCCCcccccCCC
Confidence            99999999999998776               5677899999999999999999999964

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.47  E-value=4.5e-14  Score=136.49  Aligned_cols=110  Identities=14%  Similarity=0.272  Sum_probs=65.6

Q ss_pred             ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEE-EEeecCCceecCCCCcccccCCCCCCCC-C
Q 017493          234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRL-RMMCLGLDWDPQTRKYGKKRQVDGCEPS-V  311 (370)
Q Consensus       234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSV-RMmcLG~gWdsDt~gY~~~~P~dGapwP-p  311 (370)
                      ..++||+.++|+||+.++|.+|++.|. |...+.++|     +...++- ++..+|+.+     .|...++..+.+|| +
T Consensus       107 ~~lp~Gl~~~p~fis~~Ee~~Ll~~i~-w~~~~~~~~-----~~~~l~~Rr~~~yG~~Y-----~Ys~~~~~~~~p~p~~  175 (345)
T 3tht_A          107 QALPPGLMVVEEIISSEEEKMLLESVD-WTEDTDNQN-----SQKSLKHRRVKHFGYEF-----HYENNNVDKDKPLSGG  175 (345)
T ss_dssp             CSCCTTEEEETTCSCHHHHHHHHTTCC----------------------CEEECCC-----------------------C
T ss_pred             ccCCCceEEEcCcCCHHHHHHHHHhcc-cCCcccccc-----CcccccCceEEEECCcc-----cccccccccCCCCCcC
Confidence            458899999999999999999888765 322222221     2233433 555677444     34334444567876 5


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493          312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS  370 (370)
Q Consensus       312 IPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD  370 (370)
                      +|++|..|++++++..                +....||+||||+|.+|++||||+|.+
T Consensus       176 ~P~~L~~l~~r~~~~~----------------~~~~~~n~~lvN~Y~~G~~I~~H~D~~  218 (345)
T 3tht_A          176 LPDICESFLEKWLRKG----------------YIKHKPDQMTINQYEPGQGIPAHIDTH  218 (345)
T ss_dssp             CCHHHHHHHHHHHHHT----------------SCSSCCSEEEEEEECTTCCEEEECCCT
T ss_pred             cCHHHHHHHHHHHhcc----------------cCCCCCCEEEEEEecCCCCEeeccCCc
Confidence            9999999999886533                345789999999999999999999973

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10

Probab=99.38  E-value=6.7e-13  Score=121.31  Aligned_cols=104  Identities=11%  Similarity=0.071  Sum_probs=72.0

Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccC-CCceeEE-EEeecCCceecCCCCcccccCCCCCCCCCCCHH
Q 017493          238 PGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYN-DGAKLRL-RMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSE  315 (370)
Q Consensus       238 PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tP-gG~~MSV-RMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~  315 (370)
                      ||+.++|+||++++|.+|+++|++-    .||+++..+ .|..+.+ |++| -+++  ....|....+   .+-|++|++
T Consensus        40 ~gl~~~~~fl~~~e~~~Ll~~l~~~----~~w~~~~~~~~g~~~~~~R~~~-~~g~--~~Y~Ys~~~~---~~~p~wp~~  109 (238)
T 2iuw_A           40 SRVCLYPGFVDVKEADWILEQLCQD----VPWKQRTGIREDITYQQPRLTA-WYGE--LPYTYSRITM---EPNPHWHPV  109 (238)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHHHH----SCCBCCEEESSSCEEECSSEEE-EEEC--CCTTSCHHHH---CCBSSCCHH
T ss_pred             CcEEEECCCCCHHHHHHHHHHHHHh----CCCccCceecCCcccccCCeeE-EcCC--CccccCCccc---CCCCCCCHH
Confidence            5799999999999999999999652    335544432 3656655 4444 1122  1113432222   344678999


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCC-CccccccC
Q 017493          316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSG-RLGLHQVC  369 (370)
Q Consensus       316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGA-rMGLHQDr  369 (370)
                      |..|.+++.+.+                  ...||+||||+|.+|+ +||||+|.
T Consensus       110 l~~l~~~~~~~~------------------g~~~n~~LvN~Y~~G~d~i~~H~D~  146 (238)
T 2iuw_A          110 LRTLKNRIEENT------------------GHTFNSLLCNLYRNEKDSVDWHSDD  146 (238)
T ss_dssp             HHHHHHHHHHHH------------------SCCCCEEEEEEECSTTCCEEEECCC
T ss_pred             HHHHHHHHHHHh------------------CCCCCEEEEEEECCCCCceeCCcCC
Confidence            999887765544                  2579999999999997 99999996

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*

Probab=99.15  E-value=5e-11  Score=106.90  Aligned_cols=104  Identities=10%  Similarity=0.044  Sum_probs=73.0

Q ss_pred             ecCc-eEEcCCCCCHHHHHHHHHHHHhhcCCCCCCccc---ccC-CCceeEE-EEeecCCceecCCC-Cc--ccccCCCC
Q 017493          236 LRPG-MVLLKHYLTIREQILIVRICQELGKGPGGFYQP---GYN-DGAKLRL-RMMCLGLDWDPQTR-KY--GKKRQVDG  306 (370)
Q Consensus       236 L~PG-mVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P---~tP-gG~~MSV-RMmcLG~gWdsDt~-gY--~~~~P~dG  306 (370)
                      -.+| .+++|+||++++|.+|++++++   . .++++|   .++ .|+.+.+ |+++    |..+.. .|  ....+   
T Consensus         7 ~~~~~~~~~~~~l~~~~a~~l~~~l~~---~-~~w~~~~~~~~~~~gk~~~~pR~~~----wyg~~~~~Y~Ysg~~~---   75 (204)
T 3s57_A            7 RAEGLDSSYTVLFGKAEADEIFQELEK---E-VEYFTGALARVQVFGKWHSVPRKQA----TYGDAGLTYTFSGLTL---   75 (204)
T ss_dssp             EETTEEEEEEECSCHHHHHHHHHHHHH---H-CCCCCGGGGEEEETTEEEECSSEEE----EEECTTCCEEETTEEE---
T ss_pred             eeCCceEEecCcCCHHHHHHHHHHHHH---h-CCCCCcccceEEECCeEeccCcEEE----EECCCCCCcccCCCcc---
Confidence            3467 6789999999999999999977   2 456433   222 4777777 6654    444331 34  22221   


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCC-CccccccC
Q 017493          307 CEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSG-RLGLHQVC  369 (370)
Q Consensus       307 apwPpIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGA-rMGLHQDr  369 (370)
                       .+.++|++|..|.+++.+.+                  ...||+||||+|.+|+ +||||+|.
T Consensus        76 -~~~pwp~~L~~l~~~~~~~~------------------g~~~n~~LvN~Y~~G~d~i~~H~D~  120 (204)
T 3s57_A           76 -SPKPWIPVLERIRDHVSGVT------------------GQTFNFVLINRYKDGSDHICEHRDD  120 (204)
T ss_dssp             -CCEECCHHHHHHHHHHHHHH------------------CCCCSEEEEEEESSTTCCEEEECCC
T ss_pred             -cCCCCCHHHHHHHHHHHHHh------------------CCCCceeEEEEECCCCCcccceecC
Confidence             12356778888887776554                  3689999999999999 99999996

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A

Probab=85.95  E-value=1.3  Score=38.96  Aligned_cols=100  Identities=18%  Similarity=0.194  Sum_probs=56.9

Q ss_pred             ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeE--EEEeecCCceecCCCCcccccCCCCCCCCC
Q 017493          234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLR--LRMMCLGLDWDPQTRKYGKKRQVDGCEPSV  311 (370)
Q Consensus       234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MS--VRMmcLG~gWdsDt~gY~~~~P~dGapwPp  311 (370)
                      ..+.|-++++++||++++-..|++.+... ..++....+.+  |....  +| ++-+ .|..+                .
T Consensus        16 ls~~P~i~~~~~fLs~~Ec~~li~~~~~~-~~~s~v~~~~~--g~~~~~~~R-~s~~-~~l~~----------------~   74 (224)
T 2jig_A           16 LSWSPRAFLLKNFLSDEECDYIVEKARPK-MVKSSVVDNES--GKSVDSEIR-TSTG-TWFAK----------------G   74 (224)
T ss_dssp             EETTTTEEEETTCSCHHHHHHHHHHHGGG-CEECEEEETTT--TEEEECSSB-CSEE-EECCT----------------T
T ss_pred             EeCCCCEEEEcccCCHHHHHHHHHHhhcc-CeeeeeecCCC--CcccccCCE-EEee-eEecC----------------C
Confidence            44678999999999998888888888652 11122211111  11100  00 0000 12111                0


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493          312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC  369 (370)
Q Consensus       312 IPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr  369 (370)
                      -.+.+..|.+++.+..               ++|...-+-..|..|.+|+.-+.|.|-
T Consensus        75 ~~~~~~~i~~ri~~~~---------------gl~~~~~e~~qv~rY~~G~~y~~H~D~  117 (224)
T 2jig_A           75 EDSVISKIEKRVAQVT---------------MIPLENHEGLQVLHYHDGQKYEPHYDY  117 (224)
T ss_dssp             CSHHHHHHHHHHHHHH---------------TCCGGGBCCCEEEEEETTCCEEEECCS
T ss_pred             CCHHHHHHHHHHHHHh---------------CCCcccccceEEEecCCCccccCcccC
Confidence            1334666777766554               344333455778899999999999993

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}

Probab=81.63  E-value=2.9  Score=37.77  Aligned_cols=94  Identities=14%  Similarity=0.062  Sum_probs=56.5

Q ss_pred             ecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHH
Q 017493          236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSE  315 (370)
Q Consensus       236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~  315 (370)
                      ..|.++++++||+++|-..|++.+.... .++.     +             |.+  .....|+.-   .+.-.+. .+.
T Consensus        37 ~~P~i~~~~~fLs~~Ec~~Li~~a~~~l-~~s~-----v-------------~~~--~~~~~~RtS---~~~wl~~-~~~   91 (216)
T 3itq_A           37 EEPLIVVLGNVLSDEECDELIELSKSKL-ARSK-----V-------------GSS--RDVNDIRTS---SGAFLDD-NEL   91 (216)
T ss_dssp             TTTTEEEEESCSCHHHHHHHHHHHHHHH-C----------------------------CCCCGGGT---TCEECCC-CHH
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHhhccc-ccce-----e-------------ccC--CccCCcEee---eeEEeCC-cHH
Confidence            4699999999999999999988876431 1111     1             000  011122111   1111112 556


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493          316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC  369 (370)
Q Consensus       316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr  369 (370)
                      ...|.+++++..               +++-..-+..-|..|.+|+.-.+|.|-
T Consensus        92 v~~i~~Ri~~~~---------------gl~~~~~E~lqv~~Y~~G~~y~~H~D~  130 (216)
T 3itq_A           92 TAKIEKRISSIM---------------NVPASHGEGLHILNYEVDQQYKAHYDY  130 (216)
T ss_dssp             HHHHHHHHHHHH---------------TSCGGGBCCCEEEEECBTCCEEEECSS
T ss_pred             HHHHHHHHHHhc---------------CceeccccceeEEEeCCCCccccccCC
Confidence            677888887766               333233455678889999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d2fdia1	200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	7e-12

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 61.6 bits (149), Expect = 7e-12
 Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 20/135 (14%)

Query: 236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMC---LGLDWD 292
           L  G V+L+ +     + LI  I     + P  F Q     G  + + M     LG    
Sbjct: 1   LAAGAVILRRFAFNAAEQLIRDINDVASQSP--FRQMVTPGGYTMSVAMTNCGHLGWTTH 58

Query: 293 PQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDIC 352
            Q   Y             +P  F  L QR+ + A                 P   PD C
Sbjct: 59  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG---------------YPDFQPDAC 103

Query: 353 IVNFYNTSGRLGLHQ 367
           ++N Y    +L LHQ
Sbjct: 104 LINRYAPGAKLSLHQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d2fdia1	200	Alkylated DNA repair protein AlkB {Escherichia col	99.97
d2iuwa1	210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	98.9

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=9.7e-32  Score=238.98  Aligned_cols=118  Identities=25%  Similarity=0.432  Sum_probs=110.4

Q ss_pred             ecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCCCC
Q 017493          236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPSVI  312 (370)
Q Consensus       236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwPpI  312 (370)
                      |+||+|+|++|+. ++|++||++|++++.. +|||+|++|+|++|+++|+||| ++|++|..+|  +..+|.++.+||+|
T Consensus         1 lapG~v~l~~f~~-~~~~~ll~~~~~~~~~-~p~r~~~~p~g~~msv~~~~~g~~gW~~d~~~Yry~~~~~~~~~~wp~i   78 (200)
T d2fdia1           1 LAAGAVILRRFAF-NAAEQLIRDINDVASQ-SPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAM   78 (200)
T ss_dssp             CCTTEEEETTTTT-TTHHHHHHHHHHHHHH-SCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCCCC
T ss_pred             CCCCEEEECCcCC-HHHHHHHHHHHHHHhh-CCceeeecCCCCcceEEEEeccccccccCCcCcccccccCCCCCCCCCc
Confidence            6899999999987 5888999999999987 8999999999999999999999 9999999888  66789999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493          313 PSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS  370 (370)
Q Consensus       313 Pe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD  370 (370)
                      |++|.+|++++++.+               +++.+.||+||||+|.+|++|++|+|.|
T Consensus        79 P~~l~~L~~~~~~~~---------------~~~~~~pn~~LvN~Y~~G~~~~~h~ddd  121 (200)
T d2fdia1          79 PQSFHNLCQRAATAA---------------GYPDFQPDACLINRYAPGAKLSLHQDKD  121 (200)
T ss_dssp             CHHHHHHHHHHHHHH---------------TCTTCCCSEEEEEEECTTCCEEEECCCC
T ss_pred             cHHHHHHHHHHHHHc---------------CCCccCCCeeEEEEecCCCCccccccCC
Confidence            999999999999888               5788999999999999999999999976

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.7e-09  Score=92.33  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=66.8

Q ss_pred             ecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCccccc-CCC-ceeEEEEeecCCceecCCCCcccccCCCCCCCCCCC
Q 017493          236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGY-NDG-AKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIP  313 (370)
Q Consensus       236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~t-PgG-~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIP  313 (370)
                      -.+|+.++|+||++++|++|++.|++-.    +|.++.. ..| ....-|.++++..   ....|....   -.+++++|
T Consensus        17 g~~~l~y~p~fLs~~e~~~Ll~~L~~e~----~w~~~~~~~~g~~~~~pR~~~~~~d---~~y~y~~~~---~~~~~~~~   86 (210)
T d2iuwa1          17 GVSRVCLYPGFVDVKEADWILEQLCQDV----PWKQRTGIREDITYQQPRLTAWYGE---LPYTYSRIT---MEPNPHWH   86 (210)
T ss_dssp             SCEEEEEETTSSCHHHHHHHHHHHHHHS----CCBCCEEESSSCEEECSSEEEEEEC---CCTTSCHHH---HCCBSSCC
T ss_pred             CcceEEEECCcCCHHHHHHHHHHHHhhC----CccccceeccCcccceeeeeEEecC---cCccccccc---cccCCCCc
Confidence            3468999999999999999999996532    2433321 112 1222233333211   111342221   13556789


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeee-cCCCCccccccC
Q 017493          314 SEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFY-NTSGRLGLHQVC  369 (370)
Q Consensus       314 e~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY-~PGArMGLHQDr  369 (370)
                      ++|..|.+++.+..                  ...++.|+||+| ++++.||+|+|.
T Consensus        87 ~~l~~l~~~~~~~~------------------~~~~~~~~ln~Y~~~~~~I~~H~D~  125 (210)
T d2iuwa1          87 PVLRTLKNRIEENT------------------GHTFNSLLCNLYRNEKDSVDWHSDD  125 (210)
T ss_dssp             HHHHHHHHHHHHHH------------------SCCCCEEEEEEECSTTCCEEEECCC
T ss_pred             HHHHHHHHhhhhhc------------------CccchhhhhhccccCCCccccCcCC
Confidence            99999998887765                  245677777777 667899999995