Citrus Sinensis ID: 017496

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRCSSRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNIDHLF

cccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHccccccEEEEEcccccccHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHccccccccEEEEcccccccEEEEEEEccccEEEEEEccccccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHccEEEEccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccEEEEEccccccc

ccccccccccccccccccccccEccccccccccccHHHccccccccccHHHccccccccccEEEEEccHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccEEEEEEcccEEEEEEEEEccccEEEEccccccccccccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHccEEEEccccHHHcHcHHcEccHHHHHHEEEEEEEEEccccccccccccccccc

madsllgpsisftFTLTFTRHLLFEkrkirprcssrksltksmsaathcrcfsnpthtqpsllvfsggtafNGVVEELKNITTRVAhvlpvsddggstAEIVRVLggpavgdirsrclrlsdestPEALAVRRLLghrlplhpqqaksewynivegehslwkgvskPYRETIRAFLSYFQNEIlrrpnesfcfsngsignfffAGARVFFQSLDAAIFLFSrvsdipsesqvlpvistndrltlgcelgdgtvirgqneishptngsmepvkkersavpalpsriKRVFYMSsegsnllhevfptansavldqLNAVDCIIYAMGSLftsicpslvspyqfwSKIHFSMFMSILMFHALLFFydnidhlf

madsllgpsisftftLTFTrhllfekrkirprcssrksltksmSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVlpvsddggstAEIVRVlggpavgdIRSRCLRLSDESTPEALAVRRLLGHRlplhpqqaksewynIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVirgqneishptngsmepvkkersavpalpsrIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNIDHLF

MADSLLGPSISftftltftrhllfEKRKIRPRCSSRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVrrllghrlplhpQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNIDHLF

*******PSISFTFTLTFTRHLLFEKRKI****************ATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSD***PEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIR*****************************IKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNIDH**

****LLGPSISFTFTLTFTRHLLFEK***********************************LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL****AKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNG****************SRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNIDHLF

MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRC************ATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPT**************PALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNIDHLF

**DSLLGPSISFTFTLTFTRHLLFEKR******************************TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISH***************VPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNI****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		370	2.2.26 [Sep-21-2011]
P53980		444	Uncharacterized protein Y	yes	no	0.727	0.605	0.345	2e-42
O06974		317	UPF0052 protein YvcK OS=B	yes	no	0.532	0.621	0.25	8e-09
Q9K706		322	UPF0052 protein BH3568 OS	yes	no	0.532	0.611	0.235	2e-08
Q97LP2		451	UPF0052 protein CA_C0512	yes	no	0.532	0.436	0.238	3e-08
P38541		323	UPF0052 protein in amyB 5	N/A	no	0.532	0.609	0.256	2e-06
Q55575		462	UPF0052 protein sll0154 O	N/A	no	0.310	0.248	0.287	9e-05

>sp\|P53980\|YNB1_YEAST Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1	Back alignment and function desciption

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 164/330 (49%), Gaps = 61/330 (18%)

Query: 61  SLLVFSGGTAFNGVVEELKNITTRVAH----VLPVSDDGGSTAEIVRVLGGPAVGDIRSR 116
           +++V SGGTA N +     NI+    H    +LP+SD+GGST+EI+R++GGPA+GDIRSR
Sbjct: 2   NVVVCSGGTATNSLTPCFSNISILKGHELTYILPISDNGGSTSEILRIVGGPAIGDIRSR 61

Query: 117 CLRL-SDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAF 175
            +RL  DE   E      L GHRLP     AK EW  IVEG H +WK +S   +E  R+F
Sbjct: 62  IVRLLQDEQLVE------LFGHRLPNDKLLAKKEWNEIVEGSHPIWKNISIEVKEMCRSF 115

Query: 176 LSYFQNEILRRPNES--FCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVL 233
           + + Q E+L++   S  F F + SIGNFF  GAR+F  SLDA+I L  R+        V+
Sbjct: 116 IIHMQAELLKKIKHSNPFQFESASIGNFFLTGARLFLGSLDASIELMMRIGRCSPLVHVI 175

Query: 234 PVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSA---------------- 277
           P I+TN    +   L +G +I GQ++ISHP+    +      SA                
Sbjct: 176 PCINTNHTHHISALLTNGEMITGQSQISHPSKSVPKDNSIAHSAKFIHLLGSYDDHLKIL 235

Query: 278 ------------------VPALPSRIKRVFYMSSEGSNL---LHEVF----------PTA 306
                             +P L +  +  F    E  NL   +H +           P  
Sbjct: 236 LDDEEEEAEEEYANPIYILPELKNS-QLHFDKLDESQNLPAPVHRILYINPYGEEIKPMG 294

Query: 307 NSAVLDQLNAVDCIIYAMGSLFTSICPSLV 336
           N   + ++   D ++Y++GSL TS+ P L+
Sbjct: 295 NPRAISKVKKADMVVYSIGSLMTSLLPILI 324

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp\|O06974\|YVCK_BACSU UPF0052 protein YvcK OS=Bacillus subtilis (strain 168) GN=yvcK PE=3 SV=1	Back alignment and function description

>sp\|Q9K706\|Y3568_BACHD UPF0052 protein BH3568 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH3568 PE=1 SV=1	Back alignment and function description

>sp\|Q97LP2\|Y512_CLOAB UPF0052 protein CA_C0512 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0512 PE=3 SV=1	Back alignment and function description

>sp\|P38541\|YAMB_THETU UPF0052 protein in amyB 5'region OS=Thermoanaerobacter thermosulfurogenes PE=3 SV=1	Back alignment and function description

>sp\|Q55575\|Y154_SYNY3 UPF0052 protein sll0154 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0154 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		370
357446981		460	hypothetical protein MTR_2g015860 [Medic	0.783	0.630	0.833	1e-141
225443825		462	PREDICTED: uncharacterized protein YNL01	0.886	0.709	0.754	1e-139
255563114		471	conserved hypothetical protein [Ricinus	0.767	0.602	0.859	1e-138
224114696		417	predicted protein [Populus trichocarpa]	0.751	0.666	0.856	1e-138
449462647		454	PREDICTED: uncharacterized protein YNL01	0.867	0.707	0.736	1e-136
449509031		477	PREDICTED: uncharacterized protein YNL01	0.867	0.672	0.733	1e-136
356546589		472	PREDICTED: uncharacterized protein YNL01	0.908	0.711	0.752	1e-136
148908973		481	unknown [Picea sitchensis]	0.797	0.613	0.784	1e-135
42571043		471	maternal effect embryo arrest 18 protein	0.791	0.622	0.798	1e-134
30685922		445	maternal effect embryo arrest 18 protein	0.791	0.658	0.798	1e-134

>gi\|357446981\|ref\|XP_003593766.1\| hypothetical protein MTR_2g015860 [Medicago truncatula] gi\|355482814\|gb\|AES64017.1\| hypothetical protein MTR_2g015860 [Medicago truncatula]	Back alignment and taxonomy information

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/295 (83%), Positives = 266/295 (90%), Gaps = 5/295 (1%)

Query: 47  THCRCFSNPTHT-----QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEI 101
            H RC+SNP H+     QP+LLVFSGGTAFNGVVE+LKN TTRVAHVLPVSDDGGSTAEI
Sbjct: 13  NHRRCYSNPNHSHPPHPQPALLVFSGGTAFNGVVEDLKNFTTRVAHVLPVSDDGGSTAEI 72

Query: 102 VRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLW 161
           VRVLGGPAVGDIRSRCLRLSD+ST EALAVR LLGHRLPL   QAKSEWY+IVEG+H LW
Sbjct: 73  VRVLGGPAVGDIRSRCLRLSDQSTAEALAVRNLLGHRLPLDSLQAKSEWYSIVEGDHVLW 132

Query: 162 KGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS 221
           KGVSKPYRETIRAFL YFQN+IL R   SFCFSNGSIGNFFFAGAR+FFQSLDAAIFLFS
Sbjct: 133 KGVSKPYRETIRAFLVYFQNQILLRSEGSFCFSNGSIGNFFFAGARIFFQSLDAAIFLFS 192

Query: 222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPAL 281
           RVSDIP ES VLPVISTNDRLTLGCEL DGT+IRGQNEISHPT+G+MEP+KKE  + PAL
Sbjct: 193 RVSDIPPESLVLPVISTNDRLTLGCELWDGTIIRGQNEISHPTSGTMEPIKKESFSAPAL 252

Query: 282 PSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLV 336
           PS+IKRVFYMSSEG NLLHEVFP+AN+AVL+QL+ VDCI+Y MGSLFTSICPSLV
Sbjct: 253 PSKIKRVFYMSSEGKNLLHEVFPSANAAVLEQLHNVDCIVYGMGSLFTSICPSLV 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225443825\|ref\|XP_002274261.1\| PREDICTED: uncharacterized protein YNL011C [Vitis vinifera] gi\|297740490\|emb\|CBI30672.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255563114\|ref\|XP_002522561.1\| conserved hypothetical protein [Ricinus communis] gi\|223538252\|gb\|EEF39861.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224114696\|ref\|XP_002316832.1\| predicted protein [Populus trichocarpa] gi\|222859897\|gb\|EEE97444.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449462647\|ref\|XP_004149052.1\| PREDICTED: uncharacterized protein YNL011C-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449509031\|ref\|XP_004163474.1\| PREDICTED: uncharacterized protein YNL011C-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356546589\|ref\|XP_003541707.1\| PREDICTED: uncharacterized protein YNL011C-like [Glycine max]	Back alignment and taxonomy information

>gi\|148908973\|gb\|ABR17590.1\| unknown [Picea sitchensis]	Back alignment and taxonomy information

>gi\|42571043\|ref\|NP_973595.1\| maternal effect embryo arrest 18 protein [Arabidopsis thaliana] gi\|330253823\|gb\|AEC08917.1\| maternal effect embryo arrest 18 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30685922\|ref\|NP_180956.2\| maternal effect embryo arrest 18 protein [Arabidopsis thaliana] gi\|25083472\|gb\|AAN72083.1\| Unknown protein [Arabidopsis thaliana] gi\|53749188\|gb\|AAU90079.1\| At2g34090 [Arabidopsis thaliana] gi\|330253822\|gb\|AEC08916.1\| maternal effect embryo arrest 18 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		370
TAIR\|locus:2055455		471	MEE18 "AT2G34090" [Arabidopsis	0.791	0.622	0.767	7.9e-117
CGD\|CAL0000122		477	orf19.6905 [Candida albicans (	0.589	0.457	0.393	6e-48
UNIPROTKB\|Q59S47		477	CaO19.6905 "Putative uncharact	0.589	0.457	0.393	6e-48
SGD\|S000004956		444	YNL011C "Putative protein of u	0.535	0.445	0.417	2e-43
UNIPROTKB\|Q81X60		317	BAS5003 "Uncharacterized prote	0.191	0.223	0.347	2e-07
TIGR_CMR\|BA_5383		317	BA_5383 "conserved hypothetica	0.191	0.223	0.347	2e-07
UNIPROTKB\|Q3AFD9		408	CHY_0273 "Putative uncharacter	0.189	0.171	0.338	8.7e-07
TIGR_CMR\|CHY_0273		408	CHY_0273 "conserved hypothetic	0.189	0.171	0.338	8.7e-07
UNIPROTKB\|Q71WV4		322	LMOf2365_2446 "Putative unchar	0.172	0.198	0.328	0.00014

TAIR\|locus:2055455 MEE18 "AT2G34090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 225/293 (76%), Positives = 243/293 (82%)

Query:    44 SAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVR 103
             S +    C S+ T   PSLLVFSGGT FNGVVEELK +TTRVAHVLPVSDDGGSTAEIVR
Sbjct:    36 STSLMAECLSSSTVEPPSLLVFSGGTGFNGVVEELKKLTTRVAHVLPVSDDGGSTAEIVR 95

Query:   104 VLGGPAVGDIRSRCLRLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKG 163
             VLGGPAVGDIRSRCLRLSDEST EALAV             QAK +WY+IVEG HSLW G
Sbjct:    96 VLGGPAVGDIRSRCLRLSDESTSEALAVRRLLGHRLPIDAHQAKKDWYDIVEGNHSLWDG 155

Query:   164 VSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRV 223
             VS+PY ETIRAFL YFQNEI RRPNE FCFSNGSIGNFFFAGAR+FFQSLDAAIFLFSRV
Sbjct:   156 VSRPYSETIRAFLIYFQNEIHRRPNERFCFSNGSIGNFFFAGARIFFQSLDAAIFLFSRV 215

Query:   224 SDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPS 283
             S+IP +S VLPVISTNDRLTLGCEL DGT+IRGQNEISHPT G+ + V K   +  ALPS
Sbjct:   216 SEIPCDSLVLPVISTNDRLTLGCELQDGTIIRGQNEISHPTTGTTQTVDKRHCSTSALPS 275

Query:   284 RIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLV 336
             +IKRVFYMSSEG+NLLHEVFP  N  VL+QL +VDCI+YAMGSLFTSICPSLV
Sbjct:   276 KIKRVFYMSSEGNNLLHEVFPPVNPTVLEQLRSVDCIVYAMGSLFTSICPSLV 328

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

CGD\|CAL0000122 orf19.6905 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59S47 CaO19.6905 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

SGD\|S000004956 YNL011C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81X60 BAS5003 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_5383 BA_5383 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3AFD9 CHY_0273 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0273 CHY_0273 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|Q71WV4 LMOf2365_2446 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110745	hypothetical protein (417 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		370
cd07187		308	cd07187, YvcK_like, family of mostly uncharacteriz	1e-71
pfam01933		291	pfam01933, UPF0052, Uncharacterized protein family	1e-51
TIGR04357		368	TIGR04357, CofD_rel_GAK, CofD-related protein, GAK	2e-44
TIGR01826		310	TIGR01826, CofD_related, conserved hypothetical pr	8e-18
cd07044		309	cd07044, CofD_YvcK, Family of CofD-like proteins a	7e-11
COG0391		323	COG0391, COG0391, Uncharacterized conserved protei	9e-10

>gnl\|CDD\|132873 cd07187, YvcK_like, family of mostly uncharacterized proteins similar to B	Back alignment and domain information

 Score =  225 bits (577), Expect = 1e-71
 Identities = 79/277 (28%), Positives = 111/277 (40%), Gaps = 80/277 (28%)

Query: 62  LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLS 121
           ++ F GGT  + ++  LK  T  +  ++ V+DDGGS+  + R LG PA GDIR+R + L+
Sbjct: 1   IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTDDGGSSGRLRRELGIPAPGDIRNRLVALA 60

Query: 122 DESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQN 181
           D+ +                                                        
Sbjct: 61  DDESLAQKLF-------------------------------------------------- 70

Query: 182 EILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDR 241
             L R    F     S+GN   A   +   S   AI L SR+  +    +VLPV  TND 
Sbjct: 71  -FLYRRFGDFDLRGHSLGNLILAALTLITGSFAEAILLLSRLLGVRG--RVLPV--TNDP 125

Query: 242 LTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301
           L L  EL DGT++RG++ ISH                  L S IKRVF    +       
Sbjct: 126 LHLVAELEDGTIVRGESRISHLE----------------LGSPIKRVFLEPPD------- 162

Query: 302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSP 338
             P AN   L+ +   D I+Y  GSL+TSI P+L+  
Sbjct: 163 --PKANPEALEAIEEADLIVYGPGSLYTSILPNLLVK 197

subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site. Length = 308

>gnl\|CDD\|216795 pfam01933, UPF0052, Uncharacterized protein family UPF0052	Back alignment and domain information

>gnl\|CDD\|213970 TIGR04357, CofD_rel_GAK, CofD-related protein, GAK system	Back alignment and domain information

>gnl\|CDD\|211689 TIGR01826, CofD_related, conserved hypothetical protein, cofD-related	Back alignment and domain information

>gnl\|CDD\|132871 cd07044, CofD_YvcK, Family of CofD-like proteins and proteins related to YvcK	Back alignment and domain information

>gnl\|CDD\|223468 COG0391, COG0391, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		370
cd07187		308	YvcK_like family of mostly uncharacterized protein	100.0
TIGR01826		310	CofD_related conserved hypothetical protein, cofD-	100.0
cd07044		309	CofD_YvcK Family of CofD-like proteins and protein	100.0
PF01933		300	UPF0052: Uncharacterised protein family UPF0052; I	100.0
COG0391		323	Uncharacterized conserved protein [Function unknow	100.0
cd07186		303	CofD_like LPPG:FO 2-phospho-L-lactate transferase;	100.0
TIGR01819		297	F420_cofD LPPG:FO 2-phospho-L-lactate transferase.	100.0
PRK13606		303	LPPG:FO 2-phospho-L-lactate transferase; Provision	100.0

>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B	Back alignment and domain information

Probab=100.00  E-value=2.3e-64  Score=493.00  Aligned_cols=216  Identities=38%  Similarity=0.590  Sum_probs=200.0

Q ss_pred             EEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHh-cCcCC
Q 017496           62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLL-GHRLP  140 (370)
Q Consensus        62 IVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~~~~~~l~~Lf-~~Rf~  140 (370)
                      ||+||||||++++++|||++++++|+||||+|||||||+||++||+++||||||||++||+.++.    ...++ +|||.
T Consensus         1 iV~igGGtGl~~ll~gLk~~~~~itaIVtv~DdGGSSG~Lr~~~g~~~~GDiR~~L~aLa~~~~~----~~~~~~~~~~~   76 (308)
T cd07187           1 IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTDDGGSSGRLRRELGIPAPGDIRNRLVALADDESL----AQKLFFLYRRF   76 (308)
T ss_pred             CEEEeccccHHHHHHHHHhcCCceEEEEECCCCCccchhHHHHcCCCCCCcHHHHHHHhcCCCch----hHHHHHHhccc
Confidence            69999999999999999999999999999999999999999999999999999999999998863    33444 67775


Q ss_pred             CCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 017496          141 LHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLF  220 (370)
Q Consensus       141 ~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~Ai~~~  220 (370)
                      .                                                +++|++||+|||+|+|+++++|++.+|++.+
T Consensus        77 ~------------------------------------------------~~~l~gh~~GNl~L~a~~~~~g~~~~ai~~~  108 (308)
T cd07187          77 G------------------------------------------------DFDLRGHSLGNLILAALTLITGSFAEAILLL  108 (308)
T ss_pred             C------------------------------------------------CCccccCcHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4                                                3789999999999999999999999999999


Q ss_pred             HhhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCCCCCCcc
Q 017496          221 SRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLH  300 (370)
Q Consensus       221 s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~  300 (370)
                      +++++|+  ++|+||  |+++++|+|+++||++++||++|+++.                +.++|++|||.+.+      
T Consensus       109 ~~~l~v~--g~VlP~--t~~~v~l~a~~~dG~~v~Ge~~i~~~~----------------~~~~I~~v~l~~~~------  162 (308)
T cd07187         109 SRLLGVR--GRVLPV--TNDPLHLVAELEDGTIVRGESRISHLE----------------LGSPIKRVFLEPPD------  162 (308)
T ss_pred             HHHhCCC--cEEEcc--cCCceEEEEEECCCCEEEEEEEeecCC----------------CCCCceEEEEECCC------
Confidence            9999998  899999  599999999999999999999998741                36899999998763      


Q ss_pred             ccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496          301 EVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID  367 (370)
Q Consensus       301 ~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~  367 (370)
                         |+++|+|++||++||+||||||||||||+|||+++|     |++|++++    +|.+|||||+-
T Consensus       163 ---~~~~~~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~g-----I~eAi~~s----~a~kV~v~N~~  217 (308)
T cd07187         163 ---PKANPEALEAIEEADLIVYGPGSLYTSILPNLLVKG-----IAEAIRAS----KAPKVYICNLM  217 (308)
T ss_pred             ---CCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchh-----HHHHHHhC----CCCEEEEecCC
Confidence               899999999999999999999999999999999998     58999999    99999999984

>TIGR01826 CofD_related conserved hypothetical protein, cofD-related	Back alignment and domain information

>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK	Back alignment and domain information

>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052	Back alignment and domain information

>COG0391 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis	Back alignment and domain information

>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase	Back alignment and domain information

>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		370
2o2z_A		323	Crystal Structure Of A Protein Member Of The Upf005		3e-09
2hzb_A		333	X-Ray Crystal Structure Of Protein Bh3568 From Baci		4e-09
2p0y_A		341	Crystal Structure Of Q88yi3_lacpl From Lactobacillu		7e-07
2ppv_A		332	Crystal Structure Of A Protein Belonging To The Upf		6e-04

>pdb|2O2Z|A Chain A, Crystal Structure Of A Protein Member Of The Upf0052 Family (Bh3568) From Bacillus Halodurans At 2.60 A Resolution Length = 323

Back alignment and structure

Iteration: 1

Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 110/280 (39%), Gaps = 83/280 (29%) Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118 + +++VF GGT + ++ LK + ++ V+DDGGS+ + + L P GD+R+ + Sbjct: 4 KKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 63 Query: 119 RLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178 LS+ +P E + F Sbjct: 64 ALSE------------------------------------------VEPLLEQL--FQHR 79 Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238 F+N S S+GN AG I S+V ++ +VLP ++ Sbjct: 80 FEN--------GNGLSGHSLGNLLLAGXTSITGDFARGISEXSKVLNV--RGKVLP--AS 127 Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298 N + L E DGT++ G+ S++P +IKRVF ++ + + Sbjct: 128 NRSIILHGEXEDGTIVTGE------------------SSIPKAGKKIKRVF-LTPKDTKP 168 Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSP 338 L E L+ + D I+ GSL+TS+ P+L+ P Sbjct: 169 LRE--------GLEAIRKADVIVIGPGSLYTSVLPNLLVP 200

PyMOL of 2o2z

>pdb|2HZB|A Chain A, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus Halodurans. Northeast Structural Genomics Consortium Bhr60. Length = 333

Back alignment and structure

>pdb|2P0Y|A Chain A, Crystal Structure Of Q88yi3_lacpl From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target Lpr6 Length = 341

Back alignment and structure

>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052 (Se_0549) From Staphylococcus Epidermidis Atcc 12228 At 2.00 A Resolution Length = 332

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		370
2o2z_A		323	Hypothetical protein; structural genomics, joint c	1e-31
2q7x_A		326	UPF0052 protein SP_1565; structural genomics, join	2e-30
2ppv_A		332	Uncharacterized protein; putative phosphotransfera	2e-29
2p0y_A		341	Hypothetical protein LP_0780; structural genomics,	7e-29
3c3d_A		311	2-phospho-L-lactate transferase; alpha-beta protei	2e-09

>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A Length = 323	Back alignment and structure

 Score =  120 bits (303), Expect = 1e-31
 Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 83/280 (29%)

Query: 59  QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
           + +++VF GGT  + ++  LK     +  ++ V+DDGGS+  + + L  P  GD+R+  +
Sbjct: 4   KKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 63

Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
            LS+        + +L  HR                                        
Sbjct: 64  ALSEVEP----LLEQLFQHRF--------------------------------------- 80

Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
                          S  S+GN   AG           I   S+V ++    +VLP   +
Sbjct: 81  ---------ENGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVR--GKVLPA--S 127

Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
           N  + L  E+ DGT++ G+                  S++P    +IKRVF         
Sbjct: 128 NRSIILHGEMEDGTIVTGE------------------SSIPKAGKKIKRVF--------- 160

Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSP 338
           L           L+ +   D I+   GSL+TS+ P+L+ P
Sbjct: 161 LTPKDTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVP 200

PyMOL of 2o2z

>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae} Length = 326	Back alignment and structure

>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis} Length = 332	Back alignment and structure

>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} Length = 341	Back alignment and structure

>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A Length = 311	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		370
2o2z_A		323	Hypothetical protein; structural genomics, joint c	100.0
2q7x_A		326	UPF0052 protein SP_1565; structural genomics, join	100.0
2p0y_A		341	Hypothetical protein LP_0780; structural genomics,	100.0
2ppv_A		332	Uncharacterized protein; putative phosphotransfera	100.0
3c3d_A		311	2-phospho-L-lactate transferase; alpha-beta protei	100.0
4g6h_A		502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	81.24

>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A	Back alignment and structure

Probab=100.00  E-value=1.9e-66  Score=508.82  Aligned_cols=218  Identities=29%  Similarity=0.474  Sum_probs=205.4

Q ss_pred             CCCeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcC
Q 017496           58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGH  137 (370)
Q Consensus        58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~~~~~~l~~Lf~~  137 (370)
                      ++||||+||||||++++++|||+++.++|+||||+|||||||+||++||+++|||||||||+||+.++    .+.+||+|
T Consensus         3 ~~~kiv~lgGGtGl~~ll~gL~~~~~~iT~IVtv~DdGgssG~LR~~~~~~~pGDir~~l~aLa~~~~----~~~~L~~~   78 (323)
T 2o2z_A            3 KKKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEP----LLEQLFQH   78 (323)
T ss_dssp             CCEEEEEEECSHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHHTSCCCHHHHHHHHHHCCCCH----HHHHHHHC
T ss_pred             CCCeEEEECCcccHHHHHHHHHhcCCCeEEEEECCcCCccchhhHhhcCCCCCchHHHHHHHhCCCcH----HHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999864    68899999


Q ss_pred             cCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHHHH
Q 017496          138 RLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAI  217 (370)
Q Consensus       138 Rf~~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~Ai  217 (370)
                      ||+.+                                                +||++||+||+||+|++.+.|+|++||
T Consensus        79 Rf~~~------------------------------------------------~dlagh~~GNl~L~al~~~~g~~~~ai  110 (323)
T 2o2z_A           79 RFENG------------------------------------------------NGLSGHSLGNLLLAGMTSITGDFARGI  110 (323)
T ss_dssp             BCCCC-------------------------------------------------CCTTCBHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCCC------------------------------------------------CccccCcHHHHHHHHHHHccCCHHHHH
Confidence            99852                                                589999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCCCCC
Q 017496          218 FLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSN  297 (370)
Q Consensus       218 ~~~s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~  297 (370)
                      +.+|++++|+  ++|+||  |+++++|+|+++||++++||+||+++                  ..+|++|||.+.    
T Consensus       111 ~~~~~~l~v~--g~VlP~--s~~~v~l~a~~~dG~~v~ge~~I~~~------------------~~~i~~v~~~p~----  164 (323)
T 2o2z_A          111 SEMSKVLNVR--GKVLPA--SNRSIILHGEMEDGTIVTGESSIPKA------------------GKKIKRVFLTPK----  164 (323)
T ss_dssp             HHHHHHTTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTGGGG------------------CSCEEEEEEEST----
T ss_pred             HHHHHHhCCC--CEEEcC--CCCceEEEEEECCCCEEEEeEcccCC------------------CCCceEEEEeCC----
Confidence            9999999998  899999  69999999999999999999999864                  479999999764    


Q ss_pred             CccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496          298 LLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID  367 (370)
Q Consensus       298 ~~~~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~  367 (370)
                           .|+++|+|++||++||+||||||||||||+|||+|||     |++|++.+    +|.+|||||+-
T Consensus       165 -----~~~~~p~~l~AI~~AD~IvlgPGS~~TSI~P~Llv~g-----i~~Ai~~s----~A~kV~v~Nl~  220 (323)
T 2o2z_A          165 -----DTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPG-----ICEAIKQS----TARKVYICNVM  220 (323)
T ss_dssp             -----TCCCCHHHHHHHHHCSEEEECSSCTTTTHHHHHTSTT-----HHHHHHHC----CSEEEEECCSB
T ss_pred             -----CCCCCHHHHHHHHhCCEEEECCCCCHHHhcccccCch-----HHHHHHhC----CCCEEEEcCCC
Confidence                 4899999999999999999999999999999999998     58999888    99999999984

PyMOL of 2o2z

>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}	Back alignment and structure

>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}	Back alignment and structure

>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}	Back alignment and structure

>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A	Back alignment and structure

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		370
d2hzba1		311	c.143.1.1 (A:2-312) Hypothetical protein BH3568 {B	7e-33
d2ffea1		309	c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate tr	4e-23

>d2hzba1 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {Bacillus halodurans [TaxId: 86665]} Length = 311	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: CofD-like
superfamily: CofD-like
family: CofD-like
domain: Hypothetical protein BH3568
species: Bacillus halodurans [TaxId: 86665]

 Score =  122 bits (308), Expect = 7e-33
 Identities = 59/280 (21%), Positives = 100/280 (35%), Gaps = 83/280 (29%)

Query: 59  QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
           + +++VF GGT  + ++  LK     +  ++ V+DDGGS+  + + L  P  GD+R+  +
Sbjct: 2   KKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 61

Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
            LS+        + +L  HR                                        
Sbjct: 62  ALSEVEP----LLEQLFQHRFE-------------------------------------- 79

Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
                          S  S+GN   AG           I   S+V ++    +VLP   +
Sbjct: 80  ----------NGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVR--GKVLPA--S 125

Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
           N  + L  E+ DGT++ G++ I                       +IKRVF    +    
Sbjct: 126 NRSIILHGEMEDGTIVTGESSIPK------------------AGKKIKRVFLTPKD---- 163

Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSP 338
                       L+ +   D I+   GSL+TS+ P+L+ P
Sbjct: 164 -----TKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVP 198

PyMOL of d2hzba1

>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]} Length = 309	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		370
d2hzba1		311	Hypothetical protein BH3568 {Bacillus halodurans [	100.0
d2ffea1		309	LPPG:FO 2-phospho-L-lactate transferase CofD {Meth	100.0

>d2hzba1 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CofD-like
superfamily: CofD-like
family: CofD-like
domain: Hypothetical protein BH3568
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=1.6e-59  Score=455.68  Aligned_cols=218  Identities=29%  Similarity=0.473  Sum_probs=202.3

Q ss_pred             CCCeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcC
Q 017496           58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGH  137 (370)
Q Consensus        58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~~~~~~l~~Lf~~  137 (370)
                      ++++||+||||||++++++||+++..++|+||||+|||||||+||++|+++|+||+|+||++|++.++    .|.++|+|
T Consensus         1 ~~~~Iv~l~GGtG~~~ll~gl~~~~~~lt~IVn~~DDggssG~Lr~~~~i~p~gD~r~~l~al~~~~~----~~~~l~~~   76 (311)
T d2hzba1           1 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEP----LLEQLFQH   76 (311)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHTCSCCCHHHHHHHHHHCCSCH----HHHHHHHC
T ss_pred             CCCcEEEECCcccHHHHHHHHHhCCCCeEEEEECccCCccchhhhhhcCCCCchHHHHHHHhcCCCcH----HHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999998764    57789999


Q ss_pred             cCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHHHH
Q 017496          138 RLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAI  217 (370)
Q Consensus       138 Rf~~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~Ai  217 (370)
                      ||+..                                                +++.+|++||++++++...+|+|.+||
T Consensus        77 rf~~~------------------------------------------------~~~~~~~lGn~~la~~~~~~~~l~~ai  108 (311)
T d2hzba1          77 RFENG------------------------------------------------NGLSGHSLGNLLLAGMTSITGDFARGI  108 (311)
T ss_dssp             BCCCC------------------------------------------------SSSTTCBHHHHHHHHHHHHHSCHHHHH
T ss_pred             hcccc------------------------------------------------CCcccchHHHHHHHHHHHhcCCHHHHH
Confidence            99752                                                578999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCCCCC
Q 017496          218 FLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSN  297 (370)
Q Consensus       218 ~~~s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~  297 (370)
                      +++|+++||+  ++|+||  |+++++|+|+++||++++||++|.+.                  ..+++++++...    
T Consensus       109 ~~~~~~lgi~--~~VlP~--t~~~v~l~~~~~dG~~~~ge~~i~~~------------------~~~~~~~~~~~~----  162 (311)
T d2hzba1         109 SEMSKVLNVR--GKVLPA--SNRSIILHGEMEDGTIVTGESSIPKA------------------GKKIKRVFLTPK----  162 (311)
T ss_dssp             HHHHHHHTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTSGGG------------------CSCEEEEEEEST----
T ss_pred             HHHHHHhCCC--CEEEec--CCCceEEEEEECCCCcccCcchhhhc------------------CCcceEeecccC----
Confidence            9999999998  899999  69999999999999999999999863                  456778887654    


Q ss_pred             CccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496          298 LLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID  367 (370)
Q Consensus       298 ~~~~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~  367 (370)
                           .++++|++++||++||+||||||||||||+|||++||     |++||+.+    +|.+|||||+.
T Consensus       163 -----~~~~~~~~~~aI~~AD~IiigPgs~~tSI~P~L~v~g-----i~~AI~~s----~a~~v~V~ni~  218 (311)
T d2hzba1         163 -----DTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPG-----ICEAIKQS----TARKVYICNVM  218 (311)
T ss_dssp             -----TCCCCHHHHHHHHHCSEEEECSSCCCCCCHHHHTSTT-----HHHHHHHC----CSEEEEECCSB
T ss_pred             -----CCcCChhHHHHHHhCCcEEEcCCcHHHHhhhheecHH-----HHHHHhcC----CCCEEEEecCC
Confidence                 4889999999999999999999999999999999998     58898888    99999999983

PyMOL of d2hzba1

>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure