Citrus Sinensis ID: 017509

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
cccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEEEEEEEEEEEccccccEEccccEEEEEEccccccccHHHHHHHcccccccccccccccccccEEEEEEEEEEcccccEEEEEcccEEccccccccccEEEEcccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEcccccEEEEcccccEEEccccccccccEEEEEEEc
ccccccccccccccccHHHHccccHHHHHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHccEEEEEEEEcccccccccccEEEcccccccccccHHHHHHHHccHHHcccccccccccccEEEcEEEEEEEccccEEEEEEEEEcccccccccEEEEccccHHHccccHHccccccccEEEEEEEEEEEccccccccEEEEEEEcccccEEEEccccEccccHHHcccccEEEEEEEEc
mkainepvksvkdllprglinsgnlCFLNATLQALMSCSPFVQLLQELRtrdipkagyptLTAFVGfvsdfdtpsggsskkknisvldigrpfspsMFEAVLKNftpdvpnsisgrprqEDAQEFLSFIMDQMHDELLKLqgestsingaNTALVSLaeedewetvgpknksavtrtqsflpsalsdifGGQLKSVVKAQgnkasatvqPFLLLHLDIYSEAVHTIEDALRLfsapenlegyrtsstgnagvvtaKKSVKIQTLSKILILHLMRfsygsqgstklhksvrfplqlvlgrdllvtpsaegrKYELVATVThhgrdpskghytadaryfndqwlhfddasvtaigtskvlhDQAYVLFYKQV
mkainepvksvkdllprglINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSdfdtpsggsskkknisvLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGyrtsstgnagvvtakksvkIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATvthhgrdpskghYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
************DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDF**************VLDIG******MFEAVLK*********************FLSFIMDQMHDELL**************ALV************************FLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY***
***************PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD***AGYPTLTAFVGFVSDFDT*************LDIGRPFSPSMFEAVLKNFTPDV*********QEDAQEFLSFIMDQMHDELL***********************************VTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAG*VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDL******EGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFD********KKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAE************SAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
*****E*****KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQ********************EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q9FPS3551 Ubiquitin carboxyl-termin yes no 0.997 0.669 0.706 1e-152
Q7ZXR7805 Ubiquitin carboxyl-termin N/A no 0.967 0.444 0.358 3e-62
Q2NL57791 Ubiquitin carboxyl-termin N/A no 0.964 0.451 0.354 1e-61
Q6DIJ4805 Ubiquitin carboxyl-termin yes no 0.967 0.444 0.353 4e-61
Q5ZJN4785 Ubiquitin carboxyl-termin yes no 0.967 0.456 0.354 2e-59
Q3KR59794 Ubiquitin carboxyl-termin yes no 0.943 0.439 0.367 4e-59
P52479792 Ubiquitin carboxyl-termin yes no 0.959 0.448 0.360 3e-57
Q14694798 Ubiquitin carboxyl-termin yes no 0.959 0.444 0.350 1e-56
A5PJS6800 Ubiquitin carboxyl-termin yes no 0.959 0.443 0.348 4e-55
O96612451 Ubiquitin hydrolase B OS= yes no 0.678 0.556 0.405 2e-45
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1 Back     alignment and function desciption
 Score =  539 bits (1389), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/372 (70%), Positives = 305/372 (81%), Gaps = 3/372 (0%)

Query: 1   MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPT 60
           +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQLLQ+++ +DIPKA  PT
Sbjct: 181 LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPT 240

Query: 61  LTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQE 120
           L AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+NFTPDV N++SGRPRQE
Sbjct: 241 LAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQE 299

Query: 121 DAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED--EWETVGPKNKSAVTRTQ 178
           DAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  EWETVGPKNKSAVTRTQ
Sbjct: 300 DAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGDEWETVGPKNKSAVTRTQ 359

Query: 179 SFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPEN 238
           SF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ + V  IEDAL LFSA E+
Sbjct: 360 SFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGVQGIEDALHLFSAQED 419

Query: 239 LEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLG 298
           LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQGSTKL K V+FPL+L L 
Sbjct: 420 LEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLN 479

Query: 299 RDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVL 358
           R  LV+ S E  +YELVAT+THHG DPSKGHYT DAR  N QWL FDDASVT IGT  VL
Sbjct: 480 RSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVL 539

Query: 359 HDQAYVLFYKQV 370
           HDQAYVLFYKQV
Sbjct: 540 HDQAYVLFYKQV 551
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q7ZXR7|UB10B_XENLA Ubiquitin carboxyl-terminal hydrolase 10-B OS=Xenopus laevis GN=usp10-b PE=2 SV=1 Back     alignment and function description
>sp|Q2NL57|UB10A_XENLA Ubiquitin carboxyl-terminal hydrolase 10-A OS=Xenopus laevis GN=usp10-a PE=2 SV=1 Back     alignment and function description
>sp|Q6DIJ4|UBP10_XENTR Ubiquitin carboxyl-terminal hydrolase 10 OS=Xenopus tropicalis GN=usp10 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJN4|UBP10_CHICK Ubiquitin carboxyl-terminal hydrolase 10 OS=Gallus gallus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|Q3KR59|UBP10_RAT Ubiquitin carboxyl-terminal hydrolase 10 OS=Rattus norvegicus GN=Usp10 PE=2 SV=1 Back     alignment and function description
>sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=3 Back     alignment and function description
>sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2 Back     alignment and function description
>sp|A5PJS6|UBP10_BOVIN Ubiquitin carboxyl-terminal hydrolase 10 OS=Bos taurus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|O96612|UBPB_DICDI Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
225449917 553 PREDICTED: ubiquitin carboxyl-terminal h 1.0 0.669 0.762 1e-168
356542965 530 PREDICTED: ubiquitin carboxyl-terminal h 0.981 0.684 0.771 1e-164
356531617 532 PREDICTED: ubiquitin carboxyl-terminal h 0.981 0.682 0.768 1e-164
357450917 532 Ubiquitin carboxyl-terminal hydrolase [M 0.972 0.676 0.752 1e-160
255544103 605 conserved hypothetical protein [Ricinus 0.908 0.555 0.810 1e-159
297798878 550 ubiquitin-specific protease 24 [Arabidop 0.994 0.669 0.711 1e-152
18417689 551 ubiquitin carboxyl-terminal hydrolase 24 0.997 0.669 0.706 1e-151
222423693 551 AT4G30890 [Arabidopsis thaliana] 0.997 0.669 0.706 1e-151
449507688 542 PREDICTED: ubiquitin carboxyl-terminal h 0.994 0.678 0.701 1e-150
449451721 522 PREDICTED: ubiquitin carboxyl-terminal h 0.994 0.704 0.699 1e-149
>gi|225449917|ref|XP_002268974.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Vitis vinifera] gi|296081305|emb|CBI17749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 283/371 (76%), Positives = 325/371 (87%), Gaps = 1/371 (0%)

Query: 1   MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPT 60
           +KA N P  +VK+LLPRGLINSGNLCFLNATLQAL+SC+PF+QLLQELR RDIPK GYPT
Sbjct: 183 LKAPNGPAPAVKNLLPRGLINSGNLCFLNATLQALLSCTPFIQLLQELRIRDIPKVGYPT 242

Query: 61  LTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQE 120
           LTAF  FVS+FD P+  S KKK+++ ++ GRPFSP+MFE VLKNFTPDVPN ISGRPRQE
Sbjct: 243 LTAFAEFVSEFDMPTDLSLKKKDLNGVETGRPFSPAMFEGVLKNFTPDVPNKISGRPRQE 302

Query: 121 DAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSF 180
           DAQEFLSF+MDQMHDELLKL+G  +++NG  ++LVS AE+DEWETVGPKNKSAVTRTQSF
Sbjct: 303 DAQEFLSFVMDQMHDELLKLEGFFSNLNGGKSSLVSSAEDDEWETVGPKNKSAVTRTQSF 362

Query: 181 LPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLE 240
           +PS LS IFGGQL+SVVKA+GNKASATVQPFLLLHLDI  EA++TIEDALRLFSAPE LE
Sbjct: 363 VPSELSKIFGGQLRSVVKARGNKASATVQPFLLLHLDILPEAIYTIEDALRLFSAPETLE 422

Query: 241 GYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGR 299
           GYRTS TG AG+VTA KSVKIQ LS+I+ILHLMRF Y  +QGSTKLHK V FPL+LVLGR
Sbjct: 423 GYRTSGTGKAGLVTASKSVKIQKLSEIMILHLMRFYYDENQGSTKLHKPVTFPLELVLGR 482

Query: 300 DLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH 359
           +LLV+P+ EGRKYELVAT+THHGRDPSKGHYT DAR+ +  WL FDD++V  + TSKVLH
Sbjct: 483 ELLVSPTTEGRKYELVATITHHGRDPSKGHYTTDARHHSGHWLRFDDSAVNVVSTSKVLH 542

Query: 360 DQAYVLFYKQV 370
           +  YVLFYKQV
Sbjct: 543 EHPYVLFYKQV 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356542965|ref|XP_003539934.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|356531617|ref|XP_003534373.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|357450917|ref|XP_003595735.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355484783|gb|AES65986.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255544103|ref|XP_002513114.1| conserved hypothetical protein [Ricinus communis] gi|223548125|gb|EEF49617.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297798878|ref|XP_002867323.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] gi|297313159|gb|EFH43582.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417689|ref|NP_567860.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|42573095|ref|NP_974644.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|334187041|ref|NP_001190875.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|75262799|sp|Q9FPS3.1|UBP24_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 24; AltName: Full=Deubiquitinating enzyme 24; Short=AtUBP24; AltName: Full=Ubiquitin thioesterase 24; AltName: Full=Ubiquitin-specific-processing protease 24 gi|11993488|gb|AAG42762.1|AF302672_1 ubiquitin-specific protease 24 [Arabidopsis thaliana] gi|332660424|gb|AEE85824.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660425|gb|AEE85825.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660426|gb|AEE85826.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423693|dbj|BAH19813.1| AT4G30890 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449507688|ref|XP_004163102.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449451721|ref|XP_004143610.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2126649551 UBP24 "ubiquitin-specific prot 0.997 0.669 0.706 3.2e-136
DICTYBASE|DDB_G0275021451 ubpB "putative ubiquitin carbo 0.689 0.565 0.403 1.4e-54
UNIPROTKB|G4N4M01024 MGG_05996 "Ubiquitin C-termina 0.905 0.327 0.352 2.4e-49
ASPGD|ASPL0000031525840 AN5186 [Emericella nidulans (t 0.908 0.4 0.346 1.1e-48
UNIPROTKB|F1NQY5795 USP10 "Ubiquitin carboxyl-term 0.748 0.348 0.371 7.6e-46
UNIPROTKB|Q7ZXR7805 usp10-b "Ubiquitin carboxyl-te 0.832 0.382 0.345 2.8e-45
UNIPROTKB|Q5ZJN4785 USP10 "Ubiquitin carboxyl-term 0.748 0.352 0.368 4.1e-45
UNIPROTKB|Q2NL57791 usp10-a "Ubiquitin carboxyl-te 0.832 0.389 0.345 4.2e-45
RGD|1561965794 Usp10 "ubiquitin specific pept 0.835 0.389 0.352 1.2e-44
UNIPROTKB|Q3KR59794 Usp10 "Ubiquitin carboxyl-term 0.835 0.389 0.352 1.2e-44
TAIR|locus:2126649 UBP24 "ubiquitin-specific protease 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 263/372 (70%), Positives = 305/372 (81%)

Query:     1 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPT 60
             +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQLLQ+++ +DIPKA  PT
Sbjct:   181 LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPT 240

Query:    61 LTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQE 120
             L AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+NFTPDV N++SGRPRQE
Sbjct:   241 LAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQE 299

Query:   121 DAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED--EWETVGPKNKSAVTRTQ 178
             DAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  EWETVGPKNKSAVTRTQ
Sbjct:   300 DAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGDEWETVGPKNKSAVTRTQ 359

Query:   179 SFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPEN 238
             SF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ + V  IEDAL LFSA E+
Sbjct:   360 SFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGVQGIEDALHLFSAQED 419

Query:   239 LEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLG 298
             LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQGSTKL K V+FPL+L L 
Sbjct:   420 LEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLN 479

Query:   299 RDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVL 358
             R  LV+ S E  +YELVAT+THHG DPSKGHYT DAR  N QWL FDDASVT IGT  VL
Sbjct:   480 RSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVL 539

Query:   359 HDQAYVLFYKQV 370
             HDQAYVLFYKQV
Sbjct:   540 HDQAYVLFYKQV 551
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
DICTYBASE|DDB_G0275021 ubpB "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4M0 MGG_05996 "Ubiquitin C-terminal hydrolase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000031525 AN5186 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQY5 USP10 "Ubiquitin carboxyl-terminal hydrolase 10" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZXR7 usp10-b "Ubiquitin carboxyl-terminal hydrolase 10-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJN4 USP10 "Ubiquitin carboxyl-terminal hydrolase 10" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NL57 usp10-a "Ubiquitin carboxyl-terminal hydrolase 10-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|1561965 Usp10 "ubiquitin specific peptidase 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3KR59 Usp10 "Ubiquitin carboxyl-terminal hydrolase 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS3UBP24_ARATH3, ., 4, ., 1, 9, ., 1, 20.70690.99720.6696yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028642001
RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (498 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 2e-59
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 9e-58
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 2e-53
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 9e-45
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 2e-40
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 1e-38
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 5e-31
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 4e-26
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 2e-21
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 3e-21
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-20
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 9e-19
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-15
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 1e-13
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 1e-12
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 2e-12
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 3e-12
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-11
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 2e-08
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 4e-08
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 5e-08
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 7e-08
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 3e-05
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 3e-04
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 0.001
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information 
 Score =  194 bits (494), Expect = 2e-59
 Identities = 107/362 (29%), Positives = 147/362 (40%), Gaps = 61/362 (16%)

Query: 16  PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPT--LTAFVGFVSDFDT 73
           P GL N GN C++N+ LQAL S  P    L +  +  I   G       A         +
Sbjct: 3   PTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQS 62

Query: 74  PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
           P       KN SV       SP  F   L   +P           Q+DA EFL F++DQ+
Sbjct: 63  P-----NSKNASV-------SPKNFLQALGKISPQFSGY-----MQQDAHEFLLFLLDQL 105

Query: 134 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193
           H++L  L+                           K KS          S ++ +F GQL
Sbjct: 106 HEDLNSLK---------------------------KRKSHAAEN----ESLITKLFQGQL 134

Query: 194 KSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRL-FSAPENLEGY--RTSSTGN 249
           +S +K    K  S+T +PF  L L I  E   ++   L   F   E LE           
Sbjct: 135 ESRLKCLKCKKESSTPEPFSDLSLPI--EDSSSVLKLLTGNFLKLEELEKEEKYYCPKCG 192

Query: 250 AGVVTAKKSVKIQTLSKILILHLMRF-SYGSQGSTKLHKSVRFPLQLVLGR--DLLVTPS 306
                A K + I  L  +LI+HL RF  +  +   K+   V FPL+L L    +  +   
Sbjct: 193 GKQ-NAIKKLDISRLPPVLIIHLKRFEDFNRETEKKISDRVEFPLELDLSSYLEEELEGE 251

Query: 307 AEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVL 365
               KYELVA V H G   S GHY A  +    ++W+ FDD  V+ +   +VL   AY+L
Sbjct: 252 EPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVLRSSAYIL 311

Query: 366 FY 367
           FY
Sbjct: 312 FY 313

Length = 313
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.94
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.84
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.8
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.45
PF08715320 Viral_protease: Papain like viral protease; InterP 96.82
KOG3556724 consensus Familial cylindromatosis protein [Genera 96.79
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 96.65
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 95.66
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 95.2
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 90.01
PF03292666 Pox_P4B: Poxvirus P4B major core protein; InterPro 89.91
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-65  Score=457.22  Aligned_cols=300  Identities=34%  Similarity=0.535  Sum_probs=263.8

Q ss_pred             CCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC-CCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCC
Q 017509           13 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR   91 (370)
Q Consensus        13 ~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   91 (370)
                      ...|+||.|+|||||+||+||+|.++|++.++|++..... +...+.|++|+|..++..-.              ...+.
T Consensus       105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~--------------~~~g~  170 (545)
T KOG1865|consen  105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL--------------HNPGH  170 (545)
T ss_pred             ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh--------------cCCCC
Confidence            4456999999999999999999999999999998765443 44589999999998876532              24456


Q ss_pred             CCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCC
Q 017509           92 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK  171 (370)
Q Consensus        92 ~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (370)
                      +|+|..|+..|+.+...|     +.|.|+||||||.+++|.++..+..... ...                         
T Consensus       171 pisP~~i~s~L~~I~~~f-----~~grQEDAHEFLr~~vd~mqk~cL~g~~-~~~-------------------------  219 (545)
T KOG1865|consen  171 PISPSQILSNLRNISAHF-----GRGRQEDAHEFLRFTVDAMQKACLPGHK-QVD-------------------------  219 (545)
T ss_pred             ccChHHHHHhhhhhcccc-----cCCchhhHHHHHHHHHHHHHHhhcCCCc-cCC-------------------------
Confidence            899999999999998886     8899999999999999999988741100 000                         


Q ss_pred             ccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCcccc
Q 017509          172 SAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSST  247 (370)
Q Consensus       172 ~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c  247 (370)
                           .....+++|+++|+|-+.+.++| .|.+.+.++|+.++|+|+|.  ...+|+++|+.|...|.++|   |.|..|
T Consensus       220 -----~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~--d~~sl~~AL~qFt~~E~L~gen~Y~C~~C  292 (545)
T KOG1865|consen  220 -----PRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ--DASSLQQALEQFTKPEKLDGENAYHCGRC  292 (545)
T ss_pred             -----cccccceehhhhhccchhhceecccCCCcccccccccceEEEec--cchhHHHHHHHhhhHHhhCCccccccchh
Confidence                 01112346999999999999999 89999999999999999996  66899999999999999976   788888


Q ss_pred             CCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCC
Q 017509          248 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSK  327 (370)
Q Consensus       248 ~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~  327 (370)
                        +.++.+.++..|.++|.||+|+|+||+.  ++..||.++|.||+.|||.+|+. .+.+....|+|+|||+|.|.+..+
T Consensus       293 --k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fPE~LDl~PyMS-~~~e~s~~Y~LYavlVH~g~~~~~  367 (545)
T KOG1865|consen  293 --KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFPETLDLQPYMS-QPNEGSTVYKLYAVLVHLGTSCHS  367 (545)
T ss_pred             --hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCccccccccccc-CCCCCCceEEEEEEEEeccccccC
Confidence              7888999999999999999999999996  67899999999999999999997 556788999999999999999999


Q ss_pred             ceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEEe
Q 017509          328 GHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ  369 (370)
Q Consensus       328 GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~r  369 (370)
                      |||+||||..+|.||.+||+.|+.++.+.|+++.||||||.|
T Consensus       368 GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R  409 (545)
T KOG1865|consen  368 GHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYAR  409 (545)
T ss_pred             CceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEe
Confidence            999999999999999999999999999999999999999997

>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 8e-26
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-25
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 1e-25
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 2e-25
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 3e-25
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 3e-25
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 3e-25
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 3e-25
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 5e-24
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 1e-23
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 1e-20
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 5e-20
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 6e-20
2f1z_A522 Crystal Structure Of Hausp Length = 522 6e-09
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 7e-09
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 4e-08
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 7e-07
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 169/384 (44%), Gaps = 68/384 (17%)
Query: 18  GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
           GL N GN  F+N+ LQ L + +P     L++    +I +                D P G
Sbjct: 10  GLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINR----------------DNPLG 53
Query: 77  -----GSSKKKNISVLDIGRP--FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFI 129
                  +  + I  +  GR    +P MF+  +  F P      SG  +Q+D+QE L+F+
Sbjct: 54  MKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAP----QFSGY-QQQDSQELLAFL 108
Query: 130 MDQMHDELLKLQG----ESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSAL 185
           +D +H++L +++     E    NG   A+V+   ++ WE    +N S +           
Sbjct: 109 LDGLHEDLNRVKKKPYLELKDANGRPDAVVA---KEAWENHRLRNDSVIV---------- 155
Query: 186 SDIFGGQLKS-VVKAQGNKASATVQPFLLLHLDIYSEAVHTIE----------------- 227
            D F G  KS +V  +  K S T  PF  L L +  +    +E                 
Sbjct: 156 -DTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALR 214
Query: 228 DALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLH 286
           D + LF+  E L  +      N      A K   + +L KIL++HL RFSY      KL 
Sbjct: 215 DCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLD 274
Query: 287 KSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFD 345
             V FP++ +   + +   SA    Y+L+A   H+G     GHYTA A+   N +W +FD
Sbjct: 275 TVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFD 333
Query: 346 DASVTAIGTSKVLHDQAYVLFYKQ 369
           D++V+     +++   AYVLFY++
Sbjct: 334 DSNVSLASEDQIVTKAAYVLFYQR 357
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 3e-75
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 6e-72
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 8e-72
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 1e-69
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2e-64
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 1e-61
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 1e-47
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 4e-45
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-29
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-13
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 4e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 5e-05
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
 Score =  236 bits (602), Expect = 3e-75
 Identities = 100/368 (27%), Positives = 147/368 (39%), Gaps = 35/368 (9%)

Query: 17  RGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPT--LTAFVGFVSDFDT 73
            GL N GN CFLNA LQ L S  P     L+    +++P  G       AF   +     
Sbjct: 4   VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH 63

Query: 74  PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
           P    +              +P+ F AV + + P           Q+DAQEFL  +M+++
Sbjct: 64  PDSCEA-------------VNPTRFRAVFQKYVPSFSGY-----SQQDAQEFLKLLMERL 105

Query: 134 HDELLKLQ--GESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFL---PSALSDI 188
           H E+ +          NG   +          E     +  A    + +L    S + D+
Sbjct: 106 HLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDL 165

Query: 189 FGGQLKSVVK-AQGNKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYR 243
           F GQLKS +K       S T + F  L L I    ++    ++ D   LF+  E LE   
Sbjct: 166 FVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESEN 225

Query: 244 TSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLL 302
                       + K + +Q   +IL+LHL RFS       K    V FPLQ  L     
Sbjct: 226 APVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQ-RLSLGDF 284

Query: 303 VTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQA 362
            +  A    Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + 
Sbjct: 285 ASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEG 342

Query: 363 YVLFYKQV 370
           YVLFY+ +
Sbjct: 343 YVLFYQLM 350
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.97
3mp2_A211 Non-structural protein 3; papain-like protease, TG 97.59
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 96.78
1qmy_A167 Protease, leader protease; hydrolase, sulfhydryl p 91.39
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.8e-65  Score=468.54  Aligned_cols=323  Identities=29%  Similarity=0.474  Sum_probs=264.0

Q ss_pred             CCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC-C-----CCCCCchHHHHHHHHhccCCCCCCCCcccccccc
Q 017509           14 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-I-----PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL   87 (370)
Q Consensus        14 ~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~-~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~   87 (370)
                      ..++||.|+||||||||+||+|+++|+|++++....... .     .....++.++|..|++.|+...            
T Consensus         6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~------------   73 (367)
T 2y6e_A            6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR------------   73 (367)
T ss_dssp             TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS------------
T ss_pred             CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC------------
Confidence            345999999999999999999999999999998643211 1     1224578999999999997432            


Q ss_pred             cCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC-CCCccccccccccchhhhhh
Q 017509           88 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTS-INGANTALVSLAEEDEWETV  166 (370)
Q Consensus        88 ~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (370)
                        ...++|..|+.+++...+.|     .++.||||+|||..||+.|++++.+....+.. ............+...|...
T Consensus        74 --~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~  146 (367)
T 2y6e_A           74 --DAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENH  146 (367)
T ss_dssp             --CSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHH
T ss_pred             --CCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHH
Confidence              35689999999999988876     78899999999999999999997554332211 00111111112233445444


Q ss_pred             CCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC-----------------cccCHHH
Q 017509          167 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-----------------AVHTIED  228 (370)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~-----------------~~~sl~~  228 (370)
                      ...+.           ++|.++|.|++.+.++| .|++.+.+.++|+.|+|+||..                 ...+|++
T Consensus       147 ~~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~  215 (367)
T 2y6e_A          147 RLRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRD  215 (367)
T ss_dssp             HHHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHH
T ss_pred             HHhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHH
Confidence            32222           46999999999999999 8999999999999999999854                 2469999


Q ss_pred             HHHhcCCCceecC---CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCc-ccccCcccccC
Q 017509          229 ALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVT  304 (370)
Q Consensus       229 ~l~~~~~~e~~~~---~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~~  304 (370)
                      +|+.|+.+|.+++   +.|+.|  +.++.+.++.+|.++|++|+|||+||.++.....|+.+.|.||. .|||.+|+...
T Consensus       216 ~L~~f~~~E~l~~~~~~~C~~C--~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~  293 (367)
T 2y6e_A          216 CIELFTTMETLGEHDPWYCPNC--KKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL  293 (367)
T ss_dssp             HHHHHTSCEECCC-CCEEETTT--TEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCS
T ss_pred             HHHHhcccccCCCCCCccCCCC--CCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCC
Confidence            9999999999986   678888  56678999999999999999999999999777899999999997 69999987543


Q ss_pred             CCCCCccEEEEEEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509          305 PSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV  370 (370)
Q Consensus       305 ~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv  370 (370)
                       ......|+|+|||+|.|. .++|||+||+|.. +++||+|||+.|+++++++|...+||||||+|+
T Consensus       294 -~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~  358 (367)
T 2y6e_A          294 -SARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR  358 (367)
T ss_dssp             -SSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEEC
T ss_pred             -CCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEc
Confidence             345678999999999998 8999999999997 789999999999999999999999999999985
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-48
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 2e-47
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 4e-42
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 5e-35
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-25
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (417), Expect = 2e-48
 Identities = 95/372 (25%), Positives = 149/372 (40%), Gaps = 38/372 (10%)

Query: 11  VKDLLP---------RGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPT 60
           +++L P          GL N GN C++N+ LQ L +         +     DI ++    
Sbjct: 1   IRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRS--NL 58

Query: 61  LTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQE 120
           L        +F          +        R  SP  F+  +                Q+
Sbjct: 59  LGHKGEVAEEFGIIMKALWTGQY-------RYISPKDFKITIGKINDQFAGY-----SQQ 106

Query: 121 DAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSF 180
           D+QE L F+MD +H++L K                   E ++        + A  + +  
Sbjct: 107 DSQELLLFLMDGLHEDLNKADNRKRYKE----------ENNDHLDDFKAAEHAWQKHKQL 156

Query: 181 LPSALSDIFGGQLKSVVKAQGNKASAT-VQPFLLLHLDIYSEAVHTIEDALRLFSAPENL 239
             S +  +F GQ KS V+       +   + F+ L L + S +  T++D LRLFS  E L
Sbjct: 157 NESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKL 216

Query: 240 EGY-RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLG 298
               R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +  
Sbjct: 217 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL 276

Query: 299 RDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKV 357
              ++ P    +KY L +   H+G     GHYTA  +     +W  FDD  V+ I  S V
Sbjct: 277 SQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV 335

Query: 358 LHDQAYVLFYKQ 369
               AY+LFY  
Sbjct: 336 KSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 90.7
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-58  Score=418.13  Aligned_cols=290  Identities=23%  Similarity=0.375  Sum_probs=246.6

Q ss_pred             CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCCh
Q 017509           16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP   95 (370)
Q Consensus        16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p   95 (370)
                      -+||.|+||||||||+||+|+++|+|++++...... ......++.++|..++..|+..               ..++.|
T Consensus         6 ~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~-~~~~~~~~~~~l~~lf~~l~~~---------------~~~~~~   69 (347)
T d1nbfa_           6 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHS---------------DKPVGT   69 (347)
T ss_dssp             CCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT-TCCTTTCHHHHHHHHHHHHHHC---------------SSCBCC
T ss_pred             CcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc-CCcccchHHHHHHHHHHHHhcC---------------CCCcCh
Confidence            389999999999999999999999999999875542 3445678899999999887632               245677


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccc
Q 017509           96 SMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVT  175 (370)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (370)
                      ..+...+..  +     .|..+.||||+||+..||+.|++++....                                  
T Consensus        70 ~~~~~~~~~--~-----~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~----------------------------------  108 (347)
T d1nbfa_          70 KKLTKSFGW--E-----TLDSFMQHDVQELCRVLLDNVENKMKGTC----------------------------------  108 (347)
T ss_dssp             HHHHHHTTC--C-----GGGGGSCBCHHHHHHHHHHHHHHHHTTST----------------------------------
T ss_pred             HHHHHhhch--h-----hcchHHHHHHHHHHHHHHHHHHHHHhhcc----------------------------------
Confidence            777666532  1     24677999999999999999998873221                                  


Q ss_pred             ccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccCCCccee
Q 017509          176 RTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT  254 (370)
Q Consensus       176 ~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~  254 (370)
                           ..+++.++|.|.+.+.++| .|+..+.+.++++.|+|+++..  .++.++|..++..|.+++..+.+|.+++...
T Consensus       109 -----~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~~~--~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~  181 (347)
T d1nbfa_         109 -----VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGK--KNIFESFVDYVAVEQLDGDNKYDAGEHGLQE  181 (347)
T ss_dssp             -----TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECTTC--CBHHHHHHHHTCCEEECGGGCEECSTTCEEC
T ss_pred             -----ccccccceeceEEEEeEEeCCccceeeeeccccccccccccc--cchhhhHHhhcchheeccccccccccCccee
Confidence                 1235999999999999999 8999999999999999999643  6899999999999999887666666677778


Q ss_pred             eeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceEEE
Q 017509          255 AKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTA  332 (370)
Q Consensus       255 ~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a  332 (370)
                      +.++.+|.++|++|+|+|+||.++.  ....|+...|.||..|||.+++..........|+|+|||+|.|. .++|||+|
T Consensus       182 ~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~  260 (347)
T d1nbfa_         182 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVV  260 (347)
T ss_dssp             EEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE-TTEEEEEE
T ss_pred             ccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecCC-CCCCEEEE
Confidence            9999999999999999999999873  45679999999999999999998877788899999999999998 69999999


Q ss_pred             EEEcC-CCCeEEEeCCcceeeccccccC---------------CCcEEEEEEeC
Q 017509          333 DARYF-NDQWLHFDDASVTAIGTSKVLH---------------DQAYVLFYKQV  370 (370)
Q Consensus       333 ~vr~~-~~~W~~~nD~~V~~v~~~~v~~---------------~~~yil~Y~rv  370 (370)
                      |+|.. +++||+|||+.|+++++++|..               .+||||||+|.
T Consensus       261 ~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~  314 (347)
T d1nbfa_         261 YLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE  314 (347)
T ss_dssp             EECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEG
T ss_pred             eeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEec
Confidence            99986 6789999999999999999963               26999999984
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure